Citrus Sinensis ID: 000992
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1196 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FNA4 | 1319 | Elongator complex protein | yes | no | 0.984 | 0.893 | 0.637 | 0.0 | |
| O95163 | 1332 | Elongator complex protein | yes | no | 0.876 | 0.786 | 0.286 | 1e-104 | |
| Q7TT37 | 1333 | Elongator complex protein | yes | no | 0.875 | 0.785 | 0.279 | 1e-100 | |
| Q8WND5 | 1333 | Elongator complex protein | yes | no | 0.859 | 0.771 | 0.283 | 1e-100 | |
| Q8VHU4 | 1331 | Elongator complex protein | yes | no | 0.867 | 0.779 | 0.285 | 1e-97 | |
| Q2TAQ1 | 1170 | Putative elongator comple | N/A | no | 0.783 | 0.800 | 0.285 | 3e-93 | |
| Q9VGK7 | 1252 | Putative elongator comple | yes | no | 0.859 | 0.821 | 0.259 | 5e-70 | |
| O59704 | 1253 | Elongator complex protein | yes | no | 0.829 | 0.791 | 0.243 | 1e-66 | |
| Q06706 | 1349 | Elongator complex protein | yes | no | 0.415 | 0.368 | 0.275 | 1e-48 |
| >sp|Q9FNA4|ELP1_ARATH Elongator complex protein 1 OS=Arabidopsis thaliana GN=ELP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1520 bits (3935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1189 (63%), Positives = 911/1189 (76%), Gaps = 11/1189 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + TE+VG +EGGV+
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E S IS
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVTPLSLSLMPPPMYLFSL F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL H LL VS +G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ K S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR------VKDSCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ KLA ELCEE+ ALGKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
LTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS SGMS YT G
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLG 1181
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Required for auxin distribution or signaling. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. Arabidopsis thaliana (taxid: 3702) |
| >sp|O95163|ELP1_HUMAN Elongator complex protein 1 OS=Homo sapiens GN=IKBKAP PE=1 SV=3 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 343/1198 (28%), Positives = 550/1198 (45%), Gaps = 150/1198 (12%)
Query: 59 IKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEG 117
+K +S E E G I L+++E++ V T+SG ++L S+ E VG V
Sbjct: 51 VKNEVSLVAEGFLPEDGSGRIVGVQDLLDQESVCVATASGDVILCSLSTQQLECVGSVAS 110
Query: 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE--------LAEGFDVHEPEL 169
G+ +S SPD +L+ + TG +++MT D++ + E + + + G+ E +
Sbjct: 111 GISVMSWSPDQELVLLATGQQTLIMMTKDFEPILEQQIHQDDFGESKFITVGWGRKETQF 170
Query: 170 SSS------FSF------------KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211
S F + ++WRGDG++FA +S C + ++++VW R+
Sbjct: 171 HGSEGRQAAFQMQMHESALPWDDHRPQVTWRGDGQFFA-VSVVCPETGA-RKVRVWNREF 228
Query: 212 GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271
LQ++SE A +G L W PSG+ IA+ D+ ++ IVF+E+NGL F +
Sbjct: 229 A-LQSTSEPVAGLGPALAWKPSGSLIASTQDKPNQQ---DIVFFEKNGLLHGHFTLPFLK 284
Query: 272 DST-VELLKWNCMSDLLAAVV---RFEEYDSVKICF----FSNNHWYLKYEIRYL---RR 320
D V L WN S +LA + + EE K C N HWYLK + + +
Sbjct: 285 DEVKVNDLLWNADSSVLAVWLEDLQREESSIPKTCVQLWTVGNYHWYLKQSLSFSTCGKS 344
Query: 321 DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT--AVMENSTAL----VIDGSKILVTPL 374
+ MW P P +L Y++ WTT +V +NS+ L VIDG+++LVT
Sbjct: 345 KIVSLMWDPVTPYRLHVLCQGWHYLAYDWHWTTDRSVGDNSSDLSNVAVIDGNRVLVTVF 404
Query: 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK-NCLAAILSDGCLCVV---DLPAPDMLED 430
+++PPPM + L FP V ++ F + K N LA + + + V D P+ D
Sbjct: 405 RQTVVPPPMCTYQLLFPHPVNQVTFLAHPQKSNDLAVLDASNQISVYKCGDCPSAD---- 460
Query: 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNED------- 483
+ A G G + L H R+ F NED
Sbjct: 461 ---------PTVKLGAVGGS------GFKVCLRTPHLEKRYKIQFEN---NEDQDVNPLK 502
Query: 484 -GLLGFYAQEIELACSEDH-----VQGLLTCAG-------WHAKVSTQIPLEGLVIAIAP 530
GLL + +++ LA S V LT A VS+ ++G++I++
Sbjct: 503 LGLLTWIEEDVFLAVSHSEFSPRSVIHHLTAASSEMDEEHGQLNVSSSAAVDGVIISLC- 561
Query: 531 NNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLL 590
N+K S LQ G+I +Y+ + FP P+ + + +
Sbjct: 562 CNSKTKSVVLQLADGQIFKYLWESPSLAIKPWKNSGGFPVRFPYPCTQTELAMIGEEECV 621
Query: 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGEL- 649
GL D R ++ V +N +SF+ Y + L+L T + + D L
Sbjct: 622 LGLTDRCRFFINDIEVASNITSFAVYDE-------FLLLTTHSHTCQCFCLRDASFKTLQ 674
Query: 650 -ALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKL 708
L + +H RK E RG++++ V+ D ++LQ RGNLE ++ R L
Sbjct: 675 AGLSSNHVSHGEVLRKVE---------RGSRIVTVVPQD-TKLVLQMPRGNLEVVHHRAL 724
Query: 709 VLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEF 768
VL I L + F++A +R+ RIN N+I DH + FL + F++Q++++++I F
Sbjct: 725 VLAQIRKWLDKLMFKEAFECMRKLRINLNLIYDH-NPKVFLGNVETFIKQIDSVNHINLF 783
Query: 769 VCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVP 828
+ E++T+T+Y P ++D + NK+ V A+R +E P
Sbjct: 784 FTELKEEDVTKTMY--------PAPVTSSVYLSRD---PDGNKIDLVCDAMRAVMESINP 832
Query: 829 ESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWL 888
L ILT+ + P LE L+++ EL G + P SAEEALK+LL L
Sbjct: 833 HKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQG-NAPSDPDAVSAEEALKYLLHL 884
Query: 889 ADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFE 948
D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+ M R+TID L+R+E
Sbjct: 885 VDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYE 944
Query: 949 NALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLE-AWADHLSDVKCFE 1007
A+ H+ G Y +CLNL+K L+ LKL + ++ Q + A+ +HL +E
Sbjct: 945 KAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQYQDISIAYGEHLMQEHMYE 1003
Query: 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067
A + C + EKA+ A+ GNW L VA L KD++ L + L +L K
Sbjct: 1004 PAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQLVGLGRTLAGKLVEQRKHI 1063
Query: 1068 EAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI-TKVKHASLECASSLIGE 1126
+AA + + D + LL++ WEEALR+ + + R D+I T VK + LE + +
Sbjct: 1064 DAAMVLEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLDIIETNVKPSILEAQKNYMAF 1123
Query: 1127 YKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMND-----LDDDTVSETSSTFSG 1179
++ R L VR+ K Q++ ++D + D SETSS SG
Sbjct: 1124 LDSQTATFSRHKKRLLVVRE------LKEQAQQAGLDDEVPHGQESDLFSETSSVVSG 1175
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Homo sapiens (taxid: 9606) |
| >sp|Q7TT37|ELP1_MOUSE Elongator complex protein 1 OS=Mus musculus GN=Ikbkap PE=2 SV=2 | Back alignment and function description |
|---|
Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust.
Identities = 337/1206 (27%), Positives = 549/1206 (45%), Gaps = 159/1206 (13%)
Query: 56 RASIKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR 114
R +KT IS E E G I L+++E++ V T+SG +++ ++ E VG
Sbjct: 48 RREVKTEISLVAEGFLPEDGSGCIVGIQDLLDQESVCVATASGDVIVCNLSTQQLECVGS 107
Query: 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG----------- 161
V G+ +S SPD +LL + T +++MT D++++ E + ++ EG
Sbjct: 108 VASGISVMSWSPDQELLLLATAQQTLIMMTKDFEVIAEEQIHQDDFGEGKFVTVGWGSKQ 167
Query: 162 ------------FDVHEPELSSSFSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208
F V PE + + + P I+WRGDG+YFA +S C ++ K ++VW
Sbjct: 168 TQFHGSEGRPTAFPVQLPENALPWDDRRPHITWRGDGQYFA-VSVVCRQTEARK-IRVWN 225
Query: 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268
R+ LQ++SE +G L W PSG+ IA+ D+ ++ +VF+E+NGL F +
Sbjct: 226 REFA-LQSTSESVPGLGPALAWKPSGSLIASTQDKPNQQ---DVVFFEKNGLLHGHFTLP 281
Query: 269 EQIDST-VELLKWNCMSDLLAAVVR-FEEYDS------VKICFFSNNHWYLKYEIRYL-- 318
D V L WN S +LA + + DS V++ N HWYLK + +
Sbjct: 282 FLKDEVKVNDLLWNADSSVLAIWLEDLPKEDSSTLKSYVQLWTVGNYHWYLKQSLPFSTT 341
Query: 319 -RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA------LVIDGSKILV 371
+ + +W P P +L + ++ WTT ++A VIDG+++LV
Sbjct: 342 GKNQIVSLLWDPVTPCRLHVLCTGWRYLCCDWHWTTDRSSGNSANDLANVAVIDGNRVLV 401
Query: 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431
T +++PPPM + L P V ++ F + + L V+D
Sbjct: 402 TVFRQTVVPPPMCTYRLLIPHPVNQVIFSAHLGND----------LAVLD---------- 441
Query: 432 EGTEFVVEACISETAFGSVIHLIWLGSH---LLLSVSHHGPRHSNYFRGAT--------- 479
+ V C + S + L +G + + L+ H R+S F
Sbjct: 442 ASNQISVYKCGDKPNMDSTVKLGAVGGNGFKVPLTTPHLEKRYSIQFGNNEEEEEEEVNA 501
Query: 480 --------LNEDGLLGFYAQE---------IELACSE-DHVQGLLTCAGWHAKVSTQIPL 521
+ +D L + + SE D QG L VS+ + +
Sbjct: 502 LQLSFLTWVEDDTFLAISYSHSSSQSIIHHLTVTHSEVDEEQGQL-------DVSSSVTV 554
Query: 522 EGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFP----SSCPWMNV 577
+G+VI + +K S +Q G++ +Y+ + P C M V
Sbjct: 555 DGVVIGLC-CCSKTKSLAVQLADGQVLKYLWESPSLAVEPWKNSEGIPVRFVHPCTQMEV 613
Query: 578 VSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLF 637
++G + + GL D R ++ V +N +SF+ L++ T +
Sbjct: 614 ATIGG----EECVLGLTDRCRFFINDTEVASNITSFAVCD-------DFLLVTTHSHTCQ 662
Query: 638 IVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNR 697
+ +S +LK G+ I + ERG++++ V+ D +ILQ R
Sbjct: 663 VFSLSGA-----SLKMLQAALSGSHEASGEI--LRKVERGSRIVTVVPQD-TKLILQMPR 714
Query: 698 GNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVR 757
GNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++ FV+
Sbjct: 715 GNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLENVETFVK 773
Query: 758 QVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLL 817
Q++++++I F + E++T+T+Y P + + D K K+ +
Sbjct: 774 QIDSVNHINLFFTELREEDVTKTMYPP------PITKSVQVSTHPDGK-----KLDLICD 822
Query: 818 AIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSY 875
A+R A+E P R+ C ILT+ + P LE L++++ EL G + P
Sbjct: 823 AMRAAMEAINP----RKFCLSILTSHVKKTTPELEIVLQKVQ-----ELQG-NLPFDPES 872
Query: 876 PSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLL 935
S EEALK+LL L D ++ +LG YD NL +VA SQ+DPKE+LP+L L+ M
Sbjct: 873 VSVEEALKYLLLLVDVNELFNHSLGTYDFNLVLMVAEKSQKDPKEYLPFLNTLKKMETNY 932
Query: 936 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLE 994
R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D + + V
Sbjct: 933 QRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSPQYQAVSM 991
Query: 995 AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQ 1054
A+ +HL +E A + C + EKA++A+ A G+W L VA L++ KD+VA LA+
Sbjct: 992 AYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKDKVAGLAR 1051
Query: 1055 ELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI-TKVK 1113
L +L K EAA + Y D + LL++ WEEALR+ + + R D+I T VK
Sbjct: 1052 TLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVDIIETSVK 1111
Query: 1114 HASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSET 1173
+ LE + + ++ R VR R ++ + + + D SET
Sbjct: 1112 PSILEAQKNYMDFLDSETATFIRHKNRLQVVRALR-RQAPQVHVDHEVAHGPESDLFSET 1170
Query: 1174 SSTFSG 1179
SS SG
Sbjct: 1171 SSIMSG 1176
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Mus musculus (taxid: 10090) |
| >sp|Q8WND5|ELP1_RABIT Elongator complex protein 1 OS=Oryctolagus cuniculus GN=IKBKAP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 334/1180 (28%), Positives = 549/1180 (46%), Gaps = 152/1180 (12%)
Query: 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF 137
I L+++E++ + T+SG ++L ++ + E VG V G+ +S SPD +L+ + TG
Sbjct: 71 IVGIQDLLDQESVCIATASGDVILCNLSTHQLECVGSVASGISVMSWSPDQELVLLATGQ 130
Query: 138 GQILVMTHDWDLLYENPLEE---------------------LAEG----FDVHEPELSSS 172
+++MT D++ + E + + +EG F + E +
Sbjct: 131 QTLIMMTKDFEPIMEQQIHQDDFGESKFITVGWGKKETQFHGSEGRQAAFQIQTHESALP 190
Query: 173 FSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231
+ P ++WRGDG++FA +S C + ++++VW R+ LQ++SE +G L W
Sbjct: 191 WDDHRPRVTWRGDGQFFA-VSVVCPETGA-RKVRVWNREFA-LQSTSEPVPGLGPALAWK 247
Query: 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCMSDLLAAV 290
PSG+ IA+ ++ ++ +VF+E+NGL F + D V L WN S +LA
Sbjct: 248 PSGSLIASTQNKPNQQ---DVVFFEKNGLLHGQFTLPFLKDEVKVNDLLWNADSSVLAVW 304
Query: 291 VR--FEEYDSV-----KICFFSNNHWYLKYEI---RYLRRDGIRFMWHPTKPLQLICWTL 340
+ E DSV ++ N HWYL + Y + + MW P P +L
Sbjct: 305 LEDLQREEDSVLKTYVQLWTVGNYHWYLNECLPFSTYGKSKIVSLMWDPVIPYRLHVLCQ 364
Query: 341 DGQITTYNFIWTT--AVMENSTAL----VIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394
Y++ WTT + +N + L VIDG++ILVT +++PPPM + L P V
Sbjct: 365 GWHYLCYDWRWTTDRSSGDNESDLANVAVIDGNRILVTVFQQTVVPPPMCTYRLLLPHPV 424
Query: 395 TEMAFYSKSSK-NCLAAILSDGCLCVV---DLPAPD---MLEDLEGTEFVVEACI----- 442
++ F + K N LA + + + V D P+ D L + G F V
Sbjct: 425 NQVTFCALPKKSNDLAVLDASNQISVYKCGDSPSMDPTVKLGAVGGNGFKVSLRTPHLEK 484
Query: 443 -----------SETAFGSVIHLIWLGSHLLLSVSHH--GPRHSNYFRGATLNEDGLLGFY 489
ET + L W+ + L++ H P+ S R +
Sbjct: 485 RYKIQFESNEDQETNPLKLSLLSWIEEDIFLAICHSQCSPQQSVIHRLTVV--------- 535
Query: 490 AQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISE 549
C D QG L+ VS+ I ++G++I++ N+K S LQ G+I +
Sbjct: 536 ------PCEVDEEQGQLS-------VSSSISVDGIIISMC-CNSKTKSVALQLADGQILK 581
Query: 550 YMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNN 609
Y+ + FP P+ + + + + GL D R ++ V +N
Sbjct: 582 YIWESPSLAVEPWKNPGGFPIQFPYPCIQTELAMIGGEECVLGLTDRCRFFINDTEVASN 641
Query: 610 CSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENIS 669
+SF+ Y + L+L T + + D L + +HV N +
Sbjct: 642 ITSFAVYDE-------FLLLTTHSHTCQCYCLKDASIKTLQAGLSS-SHVSNGEILRKV- 692
Query: 670 YINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMV 729
ERG++++ V+ D +ILQ RGNLE ++ R LVL I L + F++A +
Sbjct: 693 -----ERGSRIVTVVPQD-TKLILQMPRGNLEVVHHRALVLAQIRKWLDKIMFKEAFECM 746
Query: 730 RRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLS 789
R+ RIN N+I DH + FLQ+ F+RQ++ +++I F + E++T+T+Y
Sbjct: 747 RKLRINLNLIHDH-NPEVFLQNVETFIRQIDCVNHINLFFTELKEEDVTKTMYPP----P 801
Query: 790 LPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPAL 849
+P + P K+ + A+R A+E P L ILT+ + P L
Sbjct: 802 VPSSVQQSRDPGG-------TKLDLICDALRVAMENINPHKYC--LPILTSHVKKTTPEL 852
Query: 850 EEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAI 909
E L+++ EL G + P SAEEALK+LL L D +Y+ +LG YD +L +
Sbjct: 853 EIVLQKVH-----ELQG-NAPSDPDAVSAEEALKYLLLLVDVNELYDHSLGTYDFDLVLM 906
Query: 910 VALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM 969
VA SQ+DPKE+LP+L L+ M R+TID L+R+E A+ H+ G Y ++CLNL+
Sbjct: 907 VAEKSQKDPKEYLPFLNTLKKMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFSECLNLI 966
Query: 970 KKYAQLFPLGLKLITDPAK-MEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRA 1028
K L+ LKL ++ + + A+ +HL + +E A + C + EKA+ A+
Sbjct: 967 KD-KNLYNEALKLYPPTSQEYKDISIAYGEHLMEEHQYEPAGLVFARCGAHEKALSAFLT 1025
Query: 1029 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI 1088
G+W L +A L + ++++A L + L +L K +AA + Y D + LL+
Sbjct: 1026 CGSWQQTLCMAAQLNMTEEQLAGLGRTLAGKLAEQRKHSDAAIVLEQYTQDYEEAVLLLL 1085
Query: 1089 DARDWEEALRVAFMHRREDLI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQR 1147
+ WEEALR+ + + R D+I T +K + LE + Y LE +R+ +
Sbjct: 1086 EGAAWEEALRLVYKYNRLDIIETNIKPSILEAYKN----YMAFLESQSATFSRH----KE 1137
Query: 1148 RLLLVAKLQSEDRSMNDLDD--------DTVSETSSTFSG 1179
RLL V +L+ + + DLDD D SETSS SG
Sbjct: 1138 RLLEVRELKERAQQV-DLDDEMPHGQEADLFSETSSIVSG 1176
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q8VHU4|ELP1_RAT Elongator complex protein 1 OS=Rattus norvegicus GN=Ikbkap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 358 bits (920), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 346/1213 (28%), Positives = 556/1213 (45%), Gaps = 175/1213 (14%)
Query: 56 RASIKTAISAEIEHIDLEPGDS-ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR 114
+ +KT IS E E G I L+++E++ V T+SG +++ +V E VG
Sbjct: 48 KKEVKTEISLVAEGFLPEDGSGCIVGIQDLLDQESVCVATASGDVIVCNVSTQQLECVGN 107
Query: 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL--EELAEG----------- 161
V G+ +S SPD +LL + T +++MT D++++ E + ++ EG
Sbjct: 108 VASGISVMSWSPDQELLLLATAQQTLIMMTRDYEVITEQQIHQDDFGEGKFITVGWGSKD 167
Query: 162 ------------FDVHEPELSSSFSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208
F V E + S+ P I+WRGDG++FA +S C+ + K ++VW
Sbjct: 168 TQFHGSEGRPITFPVQMHESALSWDDHRPQITWRGDGQFFA-VSVVCSQTGARK-IRVWN 225
Query: 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268
R+ LQ++SE +G L W PSG+ IA+ D+ ++ +VF+E+NGL F +
Sbjct: 226 REFA-LQSTSESVPGLGPSLAWKPSGSLIASTQDKPNQQ---DVVFFEKNGLLHGYFTLP 281
Query: 269 EQIDST-VELLKWNCMSDLLAAVVRFEEYDS---------VKICFFSNNHWYLKYEIRYL 318
D V L WN S +LA V E+ V++ N HWYLK + +
Sbjct: 282 FLKDEVKVNDLLWNADSSVLA--VWLEDLPKEGSSTLKSYVQLWTVGNYHWYLKQSLPFS 339
Query: 319 ---RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA------LVIDGSKI 369
+ + +W P P +L + ++ WTT ++A VIDG+K+
Sbjct: 340 TTGKNQIVSLLWDPVTPGRLHVLCQGWRYLCCDWHWTTDRSSGNSADDLANVAVIDGNKV 399
Query: 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP-APDM- 427
LVT ++ PPPM + L P V ++ S N LA + + + V PDM
Sbjct: 400 LVTVFQRTVTPPPMCTYRLLIPHPVNQV-MSSAHLGNDLAVLDASNQISVYKCDDKPDMD 458
Query: 428 ----LEDLEGTEFVV--------------------EACISETAFGSVIHLIWLGSHLLLS 463
L + GT F V E +S F L W+ L+
Sbjct: 459 STVKLGAVGGTGFKVPLRTPHLEKRYRIQFGNKEEEEDVSPLQFR---FLTWIEGDAFLA 515
Query: 464 VSH-HGPRHSNYFRGATLNEDGLLGFYAQEIELACSE-DHVQGLLTCAGWHAKVSTQIPL 521
+SH H S + +A SE D QG L VS+ + +
Sbjct: 516 ISHSHSSPQS----------------IIHHLTMAGSEGDEEQGQLN-------VSSSVTV 552
Query: 522 EGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDD----ASFPSSCPWMNV 577
+G+VI + + K SA +Q G++ +Y+ + + F C M
Sbjct: 553 DGVVIGLCCCSKTKSSA-VQLADGQVLKYLWESPSSAVEPWKNSEGRPVRFARPCTQMEA 611
Query: 578 VSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLF 637
++G + + GL D R ++ V +N +SF+ L++ T +
Sbjct: 612 AAIGG----EECVLGLTDRCRFFINDTEVASNITSFAVCD-------DFLLVTTHSHTCQ 660
Query: 638 IVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNR 697
+S +LK G++ I + ERG++++ V+ D +ILQ R
Sbjct: 661 CFSLSGA-----SLKMLQAGLCGSQVPSGEI--LRKVERGSRIVTVVPQD-TKLILQMPR 712
Query: 698 GNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVR 757
GNLE ++ R LVL I L + F++A +R+ RIN N+I DH + FL++ F++
Sbjct: 713 GNLEVVHHRALVLAQIRKWLDKLMFKEAFECMRKLRINLNLIHDH-NPKVFLENVETFIK 771
Query: 758 QVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLL 817
Q+++++++ F + E++T+T+Y P + + D K KV +
Sbjct: 772 QIDSVNHLNLFFTELKEEDVTKTMYPP------PVTKSVQVSTNPDGK-----KVDLICD 820
Query: 818 AIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSY 875
A+R A+E P R+ C ILT+ + P L+ L+++ EL G P
Sbjct: 821 AMRVAMETINP----RKFCLSILTSHVKKTTPELDIVLQKVH-----ELQGKI-PFVPES 870
Query: 876 PSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLL 935
SAEEALK+LL L D ++ +LG YD +L +VA SQ+DPKE+LP+L L+ M
Sbjct: 871 VSAEEALKYLLLLVDVNELFNHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKKMETNY 930
Query: 936 MRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLE 994
R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D + + V
Sbjct: 931 QRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSPQYQAVSV 989
Query: 995 AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQ 1054
A+ +HL +E A + C + EKA++A+ A G+W L +A L++ KD+VA LA+
Sbjct: 990 AYGEHLVQELLYEPAGLVFARCGAHEKALEAFLACGSWQQALCMAAQLQMAKDKVAGLAR 1049
Query: 1055 ELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI-TKVK 1113
L +L K EAA + Y D + LL++ WEEALR+ + + R D+I T VK
Sbjct: 1050 TLAGKLVEQRKHSEAATVLEQYALDYEEAVLLLLEGSAWEEALRLVYKYDRVDIIETSVK 1109
Query: 1114 HASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSM-------NDLD 1166
+ LE + Y + L+ R+ + RL +V +L+S+ + + +
Sbjct: 1110 PSILEAQKN----YMDFLDSQTATFIRH----KNRLKVVRELKSQRPRVHVDHEVAHGRE 1161
Query: 1167 DDTVSETSSTFSG 1179
D SETSS SG
Sbjct: 1162 TDLFSETSSIRSG 1174
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. Rattus norvegicus (taxid: 10116) |
| >sp|Q2TAQ1|ELP1_XENLA Putative elongator complex protein 1 OS=Xenopus laevis GN=ikbkap PE=2 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 295/1034 (28%), Positives = 482/1034 (46%), Gaps = 97/1034 (9%)
Query: 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235
K I+WRGDG+ FA +S C S ++++VW R+ LQ++SE + L W PSGA
Sbjct: 46 KPRITWRGDGQLFA-VSSVCKESGT-RKIRVWNRELA-LQSTSESIEGLEQALSWKPSGA 102
Query: 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDI---NEQIDSTVELLKWNCMSDLLAAVVR 292
IA+ + +++ S++F+E+NGL F + QI V+ L WN S +LA +
Sbjct: 103 LIASSQSKPNKH---SVIFFEKNGLVHGEFTLPFTKGQI--KVKELLWNSDSTILAIWLE 157
Query: 293 FEEYDS------VKICFFSNNHWYLKYEIRYLRRDGIR---FMWHPTKPLQLICWTLDGQ 343
E D V++ N HWYLK + + + + MW P +L ++
Sbjct: 158 DNEKDESSSGCCVQLWTVGNYHWYLKQSLNFGTDEMKKIECLMWDPENAYRLHVFSTGWH 217
Query: 344 ITTYNFIWTTAVMENSTA--LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS 401
+++ W T + VIDG K+LVT +++PPPM + ++ AV E+ F
Sbjct: 218 YFCFDWFWGTDHSDGGQGDVAVIDGDKVLVTSFQQAVVPPPMSTYFIQLSCAVNEVTFQL 277
Query: 402 KSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461
+ KN AIL + + + D V +S F + L L
Sbjct: 278 EPKKNSGIAILDSTNILSIYRYGNSTVND----PTVKLGAVSGNGFRTSSQTPKLEKKLR 333
Query: 462 LSVSHHGPRHS-----NYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVS 516
L PR++ FR T +D +QE + S H G V
Sbjct: 334 L------PRNACDVQLRSFRLLTWVQDDTFLAVSQESNSSISTVHHMNTDQMDGQDINVR 387
Query: 517 TQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHD----DASFPSSC 572
+ G +I++ + K+ A LQ GKI +Y+ D + FP C
Sbjct: 388 DVGTITGHIISLCYSPNTKHCA-LQTSNGKIWKYLCEYPTPAVEPWIDSMGQEVKFPQPC 446
Query: 573 PWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATK 632
+ S+ + ++ GL + RL ++ V +N +SF Y + L+L T
Sbjct: 447 VQTALASIEG----EDMVIGLTERSRLFINNSEVASNITSFHLYEE-------FLLLTTH 495
Query: 633 QNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVI 692
+ V + D L + N N I ERG+++I V+ D +I
Sbjct: 496 SHTCRCVSLRDTSLKALETQL-------NSASNPNDETIRKVERGSRIITVVPCD-TKLI 547
Query: 693 LQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSA 752
LQ RGNLE ++ R LVL I L + F++A +R+ RIN N++ DH +AFL +
Sbjct: 548 LQMPRGNLETIHHRALVLAQIRKWLDRLLFKEAFECMRKLRINLNLLYDHNP-KAFLDNV 606
Query: 753 SEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKV 812
F++Q+ +++YI F+ I E++T+T+Y ++ E ++ KV
Sbjct: 607 DLFIKQIGSVNYINLFLTEIKEEDVTKTMYPTHALSTMQSSE-----------GAKAKKV 655
Query: 813 SSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRR 872
V A+R A+E+ P+ L ILT+ R P LE AL+++ +RE+
Sbjct: 656 DIVCDAVRAAMEKWDPQKFC--LSILTSYVRRTIPQLEIALQKVHELRESP--------S 705
Query: 873 MSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMP 932
+ SA+EALK+LL+L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L +L+ M
Sbjct: 706 TTIVSADEALKYLLFLVDVNELYDHSLGTYDFDLVVMVAEKSQKDPKEYLPFLNKLKKME 765
Query: 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYA------QLFPLGLKLITDP 986
RYTID L+R++ AL ++ G Y + L+ +K + +L+P G
Sbjct: 766 TNYQRYTIDKHLKRYKKALSNLSKCGPDYFTEFLSFVKDQSLYTEALELYPHG------T 819
Query: 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGK 1046
+ + + A+ DHL + +E A Y C+S+EKA+ A+ ASGNW V+ +A L+
Sbjct: 820 VEYKAINAAYGDHLVSKQQYELAGLIYARCNSIEKALDAFIASGNWHQVMCMASQLEYSG 879
Query: 1047 DEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRE 1106
+++A LA+ + +L K +AA + Y D I LL++ WEEALR+ + + R
Sbjct: 880 EKIAALARTVAGKLVEQRKQADAAVLLEQYAEDYEEAILLLLEGAHWEEALRLIYKYIRL 939
Query: 1107 DLI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDL 1165
D++ T +K A L+ + + + ++ R VR+ + L ED +
Sbjct: 940 DILETNLKPALLDAQRNHMILFDNQKTTFTRHKERLSVVREMKEKARLGLLDEDVT-GCA 998
Query: 1166 DDDTVSETSSTFSG 1179
+ D S+TSS +
Sbjct: 999 EADLFSDTSSIMTA 1012
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Xenopus laevis (taxid: 8355) |
| >sp|Q9VGK7|ELP1_DROME Putative elongator complex protein 1 OS=Drosophila melanogaster GN=Elp1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 328/1263 (25%), Positives = 546/1263 (43%), Gaps = 235/1263 (18%)
Query: 1 MNNLKL--CAEV-----PLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQ 53
M NLKL C E+ P +L LQ + L A DI +F + N IY+ Q
Sbjct: 1 MRNLKLRYCKELNAVAHPQHLLLQPE---LNGGASDI-----YFVVADNKIYAVQ----- 47
Query: 54 NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG 113
E ++ + A++ I ++L A+ V + +G ++L AT
Sbjct: 48 -ESGDVRLKVIADLP--------DIVGVEFLQLDNAICVASGAGEVILVDPQTGATSEGT 98
Query: 114 RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE-EL-------------- 158
+ G+ ++ SP+ +++ T +++MT +D++ E PL+ EL
Sbjct: 99 FCDVGIESMAWSPNQEVVAFVTRTHNVVLMTSTFDVIAEQPLDAELDPDQQFVNVGWGKK 158
Query: 159 ------AEG------------FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200
+EG F E EL+ S ISWRGDG++F +++L
Sbjct: 159 ETQFHGSEGKQAAKQKESDSTFIRDEQELNQDVS----ISWRGDGEFFVV---SYVAAQL 211
Query: 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260
+ KV++ + G L ++E A + + W P+G IA ++ NK +I +E+NGL
Sbjct: 212 GRTFKVYDSE-GKLNHTAEKSANLKDSVVWRPTGNWIAV--PQQFPNKS-TIALFEKNGL 267
Query: 261 ERSS----FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316
FD+ E+ V L+W+ SD+LA +E V + N HWYLK +
Sbjct: 268 RHRELVLPFDLQEE---PVVQLRWSEDSDILAIRTCAKEEQRVYLYTIGNYHWYLKQVLI 324
Query: 317 YLRRDGIRFMWHPTKPLQLICW-TLDGQITTYNFI----------WTTAVMENSTAL-VI 364
+ + D PL L+ W T G T + + W AV N++ + VI
Sbjct: 325 FEQAD----------PLALLHWDTRCGAEHTLHVLKESGKHLVYRWAFAVDRNNSIVGVI 374
Query: 365 DGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK----NCLAAILSDGCLCVV 420
DG ++L+T +++PPPM LKF T + AF S + C I + + +
Sbjct: 375 DGKRLLLTDFDEAIVPPPMSKIVLKFETYIN--AFISHGTSLWVYTCDRKIYLNEHIHTL 432
Query: 421 --DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
+L P ML + +A +S ++ H H LL+ +H + +
Sbjct: 433 GKELQKPIML--------MPDAELSGLHLANLTHF---SPHYLLA-THSSAGSTRLLLLS 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLV--IAIAP------ 530
+ D G W +V + + + GLV +A+AP
Sbjct: 481 YKDNDNKPG----------------------EWFYRVHSSVRINGLVNAVAVAPYAMNEF 518
Query: 531 -----NNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGP 585
NN Y L+ E S V L A D C W G G
Sbjct: 519 YVQTVNNGHTYEVSLKADKTLKVE-RSYVQLHEPA-DQIDWVIVKGCIWD-----GYTGA 571
Query: 586 LKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDIL 645
L L + LH+ G + + +SF +++ ++ T+ N + V + D
Sbjct: 572 L----VTLRNQHLLHIDGYRIGEDVTSFC--------VVTNYLVYTQLNAMHFVQLDD-- 617
Query: 646 HGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYP 705
RR+ ++ NI ERGAK++ + +A V+LQ RGNLE + P
Sbjct: 618 ----------------RRQ---VASRNI-ERGAKIVTAV-ARKARVVLQLPRGNLEAICP 656
Query: 706 RKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYI 765
R LVL + + L +G+++ A+ M R+ RIN N+I DH + F+ S F+ +N ++
Sbjct: 657 RVLVLELVGDLLERGKYQKAIEMSRKQRINLNIIFDH-DVKRFVSSVGAFLNDINEPQWL 715
Query: 766 TEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEE 825
F+ + NE+ T+ +Y S K D++ + KV V + LE+
Sbjct: 716 CLFLSELQNEDFTKGMYSSNYDAS-------KQTYPSDYRVDQ--KVEYVC----RLLEQ 762
Query: 826 KVPESPSRELCILTTLARSDPPALEEALERI-KIIRETELLGSDEPRRMSYPSAEEALKH 884
++ SR L T A LE AL+ I K +E L A++ L+H
Sbjct: 763 QMNRFVSRFRLPLIT-AYVKLGCLEMALQVIWKEQQEDASL------------ADQLLQH 809
Query: 885 LLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRL 944
LL+L D +Y ALG YD L VA SQ+DPKEFLPYL +L+++P ++ ID L
Sbjct: 810 LLYLVDVNDLYNVALGTYDFGLVLFVAQKSQKDPKEFLPYLNDLKALPIDYRKFRIDDHL 869
Query: 945 QRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQ-VLEAWADHLSDV 1003
+R+ +AL H+ + G+ ++ + L ++K+ L+ GL + + ++ + A+ADHL +
Sbjct: 870 KRYTSALSHLAACGEQHYEEALEYIRKHG-LYTDGLAFYREHIEFQKNIYVAYADHLRAI 928
Query: 1004 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL 1063
++A+ Y L++A+ + + + +W VL +A L D+V AQ L LQ
Sbjct: 929 AKLDNASLMYERGGQLQQALLSAKHTLDWQRVLVLAKKLSEPLDQV---AQSLVGPLQQQ 985
Query: 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSL 1123
G+ EA ++ ++C D +L++ + A+ A + +D+ K+ A L L
Sbjct: 986 GRHMEAYELVKEHCQDRKRQFDVLLEGHLYSRAIYEAGL-EDDDVSEKIAPALLAYGVQL 1044
Query: 1124 IGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLD--DDTVSETSSTFSGMS 1181
+ L+ Y R L +R+ + D ++ ++D DT S SS +SG S
Sbjct: 1045 ESSLQADLQLFLDYKQRLLDIRRNQAKSGEGYIDTDVNLKEVDLLSDTTSLHSSQYSGTS 1104
Query: 1182 VYT 1184
T
Sbjct: 1105 RRT 1107
|
Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Drosophila melanogaster (taxid: 7227) |
| >sp|O59704|ELP1_SCHPO Elongator complex protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=iki3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 284/1168 (24%), Positives = 499/1168 (42%), Gaps = 176/1168 (15%)
Query: 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE----VVGRVEGGVRFISPSPDGDLL 131
D I + +L E A+ + G +++ VD + E ++G VE G+ S D +
Sbjct: 74 DEIQSMQFLGEPMAICLSLKGGDIVMVKVDPSPEEAPWEIIGNVENGIVASCWSTDEQVF 133
Query: 132 GVTTGFGQILVMTHDWDLLYENPLEE---------------------------------- 157
+ TG IL MT ++D++ E L +
Sbjct: 134 CIITGGDTILFMTKNFDIISETSLSDADLNEFNKHISVGWGRSETQFRGKRVRAKLRDPT 193
Query: 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHK----RLKVWERDSGT 213
L E D E +LS K+ I WRGD +Y + ++L K ++V+ R+ G
Sbjct: 194 LPEKID--EGKLSDVDDGKTYICWRGDSQYVSI-------NRLEKGPRRAIRVYSRE-GL 243
Query: 214 LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDS 273
L + SE + ++L W PSG+ +A + S+N ++F+ERNGL F + + D
Sbjct: 244 LDSISEPQDGQQSLLSWKPSGSVLATIKSDSSDNSS-KVIFFERNGLRHGEFSLRRREDE 302
Query: 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333
L WN S +LA +SV + N HWYLK EI + I WHP
Sbjct: 303 KYTGLAWNVSSSILAVSTE----NSVMLWTTGNYHWYLKKEINIPQNALIS--WHPEHAN 356
Query: 334 QLICWT---LDGQITTYNFIWTTAVMENSTAL--VIDGSKILVTPLSLSLMPPPMYLFSL 388
L ++ + ++ + N L VIDGS +LVTPLSL +PPPM + L
Sbjct: 357 TLYITGKNHIEKVVFDLKYVTEFSTSPNDFGLIPVIDGSSLLVTPLSLCNIPPPMCRYKL 416
Query: 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448
V +M + +S AA D L + + + EF + F
Sbjct: 417 SLDYNV-QMTSINATSDMLFAA--DDRRLTAFTFNSQEDIAKF--GEFDISTYAEGLNFK 471
Query: 449 SVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTC 508
S++ L G+ +LL G + + F +ED + ++L SE +L
Sbjct: 472 SLLGLS--GNQVLLLAD--GTNNCSKFFVFQCDEDN------ESLKLLASESFESCILN- 520
Query: 509 AGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASF 568
A + +++ F Q GK+ Y L ++ SF
Sbjct: 521 ASYCSEM----------------------LFFQTSSGKLISY----NLNVKSIESISLSF 554
Query: 569 PSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLI 628
P C + V V + P+ GL GRL+ +++ SF + ++
Sbjct: 555 PKPCS--DFVVVPVHETFVPI--GLTSYGRLYAEQRLLSTGVLSFFCTER-------FVL 603
Query: 629 LATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDE 688
T +NLL V L ++ V + + + + ERG+K++ + +
Sbjct: 604 FTTTKNLLKFV--------HLVSTVDDLQVVEDDAVDRHDERCRVVERGSKIVASMPS-K 654
Query: 689 AAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAF 748
AV+LQ RGNLE +YPR +VL + + ++ DA + R HR++ N++ D+ F
Sbjct: 655 MAVVLQMPRGNLETIYPRIMVLDGVRTYIKALKYGDAFKVCRTHRLDLNILFDY-DPDLF 713
Query: 749 LQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASE 808
L++ FV + + Y+ F+ ++ EN+T +Y + ++ +
Sbjct: 714 LKNIPVFVDGLYRVDYLDLFLTSLKPENVTTGMYS-----------DTSKSQSQQSVTTI 762
Query: 809 CNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSD 868
NKV+ + IR+ L K ++ + I+T+ PP +E AL I + + +
Sbjct: 763 DNKVNLLCKIIREHLTSKYGDTHFQ--AIITSYLCESPPKIEAALGMISGLIKAQ----- 815
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
+ + A++H+ +L D +++ ALGLYDL LA ++A SQ+DP+E++P+L E
Sbjct: 816 ------SETVDLAIEHMCFLVDVNMLFDHALGLYDLKLALLIAQQSQKDPREYVPFLHEF 869
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ L ++ ID L+R+E AL H+ M +++ D +L+P L+L D
Sbjct: 870 QKQESLRRKFNIDCYLKRYERALGHLKEMENAF--DEFKNFTIQHKLYPRALELYKYDKE 927
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
++VL +A +L + +AA Y + +A++AY+++G W L++ +D
Sbjct: 928 AQKEVLIIFAQYLRENGKSNEAAIAYESVGKISEAIEAYKSAGMWRECLSILQQTTNSED 987
Query: 1048 EVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRR-- 1105
+ + A++L + +A I L Y + + + + EA+R+A
Sbjct: 988 LIRETAEDLASLCIEKREHCDAGSINLLYLSNPREAVIQMCKGSQYSEAIRIARATGDSS 1047
Query: 1106 --EDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDR--- 1160
+DL+ V S AS L+ +++ ++ + R+L++ + + ED
Sbjct: 1048 IYKDLLISVLGESFGEASELVADFRNQIKS-----------QTERILVLREKKKEDPISW 1096
Query: 1161 ---SMNDLDDDTVSETSSTFS-GMSVYT 1184
+M D D +S S++ S S+YT
Sbjct: 1097 MEGTMEDQTPDDISLASTSLSTNRSLYT 1124
|
Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q06706|ELP1_YEAST Elongator complex protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IKI3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 152/551 (27%), Positives = 276/551 (50%), Gaps = 54/551 (9%)
Query: 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELA 650
FG+ + G+L + ++ + +S S L+ T Q+ L V ++ L
Sbjct: 645 FGITNNGKLFANQVLLASAVTSLEITD-------SFLLFTTAQHNLQFVHLNSTDFKPLP 697
Query: 651 LKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVL 710
L E ++E + I ERG+ ++ V+ +++V+LQ RGNLE +YPR +VL
Sbjct: 698 LVEEGV-------EDERVRAI---ERGSILVSVIPS-KSSVVLQATRGNLETIYPRIMVL 746
Query: 711 TSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVC 770
+ ++ R+++A ++ R HRIN +++ D+ + F+++ F+ Q+ + Y+ F+
Sbjct: 747 AEVRKNIMAKRYKEAFIVCRTHRINLDILHDYAP-ELFIENLEVFINQIGRVDYLNLFIS 805
Query: 771 AINNENITETLYKK---------FQFLSLPCREEFKDLPAKDF--KASECNKVSSVLLAI 819
++ +++T+T YK+ F P E + K F K S+ NK+ +L +
Sbjct: 806 CLSEDDVTKTKYKETLYSGISKSFGMEPAPLTEMQIYMKKKMFDPKTSKVNKICDAVLNV 865
Query: 820 RKALEEKVPESPSREL-CILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSA 878
+ PE + L I+T A +P L AL+ I +EL S+E
Sbjct: 866 LLS----NPEYKKKYLQTIITAYASQNPQNLSAALKLI-----SELENSEE--------K 908
Query: 879 EEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRY 938
+ + +L +L D VY++AL LYD++LA +VA SQ DP+E+LP+LQEL+ PL ++
Sbjct: 909 DSCVTYLCFLQDVNVVYKSALSLYDVSLALLVAQKSQMDPREYLPFLQELQDNEPLRRKF 968
Query: 939 TIDLRLQRFENALKHI--VSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAKMEQVLEA 995
ID L +E AL+H+ + + + ++ ++ + L+ GL L D K +
Sbjct: 969 LIDDYLGNYEKALEHLSEIDKDGNVSEEVIDYVESH-DLYKHGLALYRYDSEKQNVIYNI 1027
Query: 996 WADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQE 1055
+A HLS + + DAA Y L++AM AY+++ W +++A ++ +EV +A+E
Sbjct: 1028 YAKHLSSNQMYTDAAVAYEMLGKLKEAMGAYQSAKRWREAMSIA--VQKFPEEVESVAEE 1085
Query: 1056 LCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHA 1115
L L + +AA I L+Y +V ++L A ++ A VA ++++L+ +V
Sbjct: 1086 LISSLTFEHRYVDAADIQLEYLDNVKEAVALYCKAYRYDIASLVAIKAKKDELLEEVVDP 1145
Query: 1116 SLECASSLIGE 1126
L +I E
Sbjct: 1146 GLGEGFGIIAE 1156
|
Acts as component of the RNA polymerase II elongator complex, which is a major histone acetyltransferase component of the RNA polymerase II (RNAPII) holoenzyme and is involved in transcriptional elongation. Association with elongating RNAPII requires a hyperphosphorylated state of the RNAPII C-terminal domain (CTD). Elongator binds to both naked and nucleosomal DNA, can acetylate both core and nucleosomal histones, and is involved in chromatin remodeling. It acetylates histones H3, preferentially at 'Lys-14', and H4, preferentially at 'Lys-8'. It functions as a gamma-toxin target (TOT); disruption of the complex confers resistance to Kluyveromyces lactis toxin zymocin (pGKL1 killer toxin). May also be involved in sensitiviy to Pichia inositovora toxin. May be involved in tRNA modification. Independently, ELP3 may be involved in polarized exocytosis. It is required for the polarized localization of GTPase-activating protein SEC2. Is required for an early step in synthesis of 5-methoxycarbonylmethyl (mcm5) and 5-carbamoylmethyl (ncm5) groups present on uridines at the wobble position in tRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1196 | ||||||
| 225449591 | 1316 | PREDICTED: elongator complex protein 1 [ | 0.984 | 0.895 | 0.738 | 0.0 | |
| 224109568 | 1326 | predicted protein [Populus trichocarpa] | 0.989 | 0.892 | 0.712 | 0.0 | |
| 255575094 | 1335 | conserved hypothetical protein [Ricinus | 0.984 | 0.882 | 0.712 | 0.0 | |
| 224100935 | 1340 | predicted protein [Populus trichocarpa] | 0.988 | 0.882 | 0.701 | 0.0 | |
| 147843466 | 1533 | hypothetical protein VITISV_010008 [Viti | 0.950 | 0.741 | 0.702 | 0.0 | |
| 449483884 | 1317 | PREDICTED: elongator complex protein 1-l | 0.992 | 0.901 | 0.654 | 0.0 | |
| 449449974 | 1317 | PREDICTED: elongator complex protein 1-l | 0.992 | 0.901 | 0.653 | 0.0 | |
| 297811479 | 1317 | aba-overly sensitive 1 [Arabidopsis lyra | 0.982 | 0.892 | 0.638 | 0.0 | |
| 15240688 | 1319 | elongator complex protein 1 [Arabidopsis | 0.984 | 0.893 | 0.637 | 0.0 | |
| 115472799 | 1343 | Os07g0563700 [Oryza sativa Japonica Grou | 0.980 | 0.873 | 0.555 | 0.0 |
| >gi|225449591|ref|XP_002279262.1| PREDICTED: elongator complex protein 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1813 bits (4697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1188 (73%), Positives = 1006/1188 (84%), Gaps = 10/1188 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
MNNLKL +++ LNLEL+S +E++ FSA DIE+NRL FASS N IY+ QL S QNER K
Sbjct: 1 MNNLKLYSDLSLNLELRSAEEVVSFSAFDIERNRLVFASSDNFIYTTQLPSSQNERVWGK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
T+ +++E IDLEPGD ITAFDYLMEKEALIVGTSSGLLLLH+VD NA EVVGRVEGGV+
Sbjct: 61 TSSYSKVEPIDLEPGDFITAFDYLMEKEALIVGTSSGLLLLHNVDDNAIEVVGRVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSPDGDLLG+ TGFGQI+VMTHDWD+LYEN L++L E D+ EP SS + IS
Sbjct: 121 CISPSPDGDLLGIITGFGQIVVMTHDWDVLYENTLDDLPEDVDLSEPTFSSCY-----IS 175
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYF TL E SS HK+LKVWERD+G L A+SE KAFMG VL+WMPSGA IA+V
Sbjct: 176 WRGDGKYFVTLGELHTSSS-HKKLKVWERDTGALHAASESKAFMGTVLDWMPSGAKIASV 234
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
YD+K EN+CP IVF+ERNGLERSSF INE D+ VE+LKWNC SDLLAAVVR E +DSVK
Sbjct: 235 YDKKVENECPLIVFFERNGLERSSFSINELTDAKVEILKWNCSSDLLAAVVRSETFDSVK 294
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360
I FFSNNHWYLK EIRYLR DG++FMWHPTKPLQLICWTL G++T +F+W TAVMENST
Sbjct: 295 IWFFSNNHWYLKQEIRYLREDGVKFMWHPTKPLQLICWTLGGEVTVNSFVWVTAVMENST 354
Query: 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420
ALVID SKIL TPLSLSLMPPPMYLF+LKF + + ++AFY+K+SKN LAA LSDGCLCV
Sbjct: 355 ALVIDESKILATPLSLSLMPPPMYLFNLKFSSTIRDIAFYTKNSKNLLAAFLSDGCLCVA 414
Query: 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL 480
+LP D E+LEG E V+A SET FGS +HLIWL +H+LL VSH G HSNYF
Sbjct: 415 ELPPLDTWEELEGKELSVDASSSETIFGSFVHLIWLDAHILLGVSHFGFSHSNYFSQTPS 474
Query: 481 NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL 540
++D L G+Y QEIEL CSEDHV GL TC+GWHAK++ QIPL+GLVI +APN KK SAF+
Sbjct: 475 SKDMLHGYYLQEIELLCSEDHVPGLGTCSGWHAKITNQIPLDGLVIGLAPNPTKKCSAFV 534
Query: 541 QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH 600
QF GGK+ EY+ +G+ GA +D S SSCPWM+VV VG +G +PLLFGLDD GRLH
Sbjct: 535 QFDGGKVFEYIPNLGIMEGAPKTEDMSLSSSCPWMSVVPVGDSGSSRPLLFGLDDNGRLH 594
Query: 601 VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG 660
V GKI+CNNC SFSFYS SA A++HLILATKQ+LLF++DI DIL G+L +KYENF H G
Sbjct: 595 VGGKIICNNCRSFSFYSNSADLAITHLILATKQDLLFVIDIDDILDGKLEVKYENFIHAG 654
Query: 661 NRRKEE-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQ 719
N+R+EE N ++I IWERGAKVIGVLHGDEAAVILQT RGNLEC+YPRKLVL SI+NAL+Q
Sbjct: 655 NKRREEDNRNFITIWERGAKVIGVLHGDEAAVILQTARGNLECIYPRKLVLASIINALVQ 714
Query: 720 GRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITE 779
RFRD L+MVRRHRI+FNVIVDHCGWQAFLQSA+EFVRQVNNLSYITEFVC+I NE ITE
Sbjct: 715 SRFRDGLLMVRRHRIDFNVIVDHCGWQAFLQSAAEFVRQVNNLSYITEFVCSIKNETITE 774
Query: 780 TLYKKFQFLSLPCREEFKDLPAKDFKA-SECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
TLYK ++SL C E KD+ A DFK + NKVSSVL++IRKALEE+VPESP+RELCIL
Sbjct: 775 TLYK--NYISLLCLREAKDVQAGDFKGPNNNNKVSSVLMSIRKALEEQVPESPARELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898
TTLARSDPPALEEALERIK+IRE ELLGSD+PRR SYPSAEEALKHLLWL+DSEAVYEA+
Sbjct: 833 TTLARSDPPALEEALERIKLIREMELLGSDDPRRKSYPSAEEALKHLLWLSDSEAVYEAS 892
Query: 899 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
LGLYDL+LAAIVALNSQRDPKEFLP+LQELE MP LMRY ID+RL+R+E+ALKHI S G
Sbjct: 893 LGLYDLHLAAIVALNSQRDPKEFLPFLQELERMPVHLMRYNIDIRLRRYESALKHIASAG 952
Query: 959 DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS 1018
D+Y+ADCLNLMK+ QLFPLGL+LITDPAK ++VLEAW DH SD KCFEDAATTY CCS
Sbjct: 953 DAYYADCLNLMKENPQLFPLGLQLITDPAKKKEVLEAWGDHFSDEKCFEDAATTYLCCSG 1012
Query: 1019 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078
LEKA+KAYRA GNW GV+TVAGLLKLGK+E+ +LA ELCEELQALGKPGEAAKIALDYCG
Sbjct: 1013 LEKALKAYRACGNWGGVMTVAGLLKLGKEEIVQLANELCEELQALGKPGEAAKIALDYCG 1072
Query: 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYL 1138
DV + I+LL+ ARDWEEALRVAFMHR +DLI++V++ASLECA+ LIGEY+EGLEKVGKYL
Sbjct: 1073 DVKSAINLLVSARDWEEALRVAFMHRCDDLISEVQNASLECATLLIGEYEEGLEKVGKYL 1132
Query: 1139 TRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
RYLAVRQRRLLL AKLQSEDRS+NDLDDDT SE SS+FSGMS YTTG
Sbjct: 1133 ARYLAVRQRRLLLAAKLQSEDRSINDLDDDTASEASSSFSGMSAYTTG 1180
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109568|ref|XP_002315239.1| predicted protein [Populus trichocarpa] gi|222864279|gb|EEF01410.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1735 bits (4493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1192 (71%), Positives = 985/1192 (82%), Gaps = 9/1192 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL E+ NLELQS E++ FSA DIE+NRLFFASSAN IY+A LSSFQN + S
Sbjct: 1 MKNLKLYREISQNLELQSLQEVILFSAFDIERNRLFFASSANIIYTAHLSSFQNGK-SKG 59
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+ +EI I+LE GD ITAFDYLMEKEALI+GT +GLLLLH++D N+TE+VG+VEGGV+
Sbjct: 60 LLLPSEINQIELEDGDLITAFDYLMEKEALIIGTENGLLLLHNIDDNSTEIVGQVEGGVK 119
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE---LAEGFDVHEPELSSSFSFKS 177
ISPSPDGDLL + TGF Q+LVMTHDWDLLYE +EE +G DV + + S F S
Sbjct: 120 CISPSPDGDLLAILTGFRQVLVMTHDWDLLYEIAVEEKENYGDGLDVRKGQPFSLNMFGS 179
Query: 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI 237
ISWRGDGKYFAT+SE SS L K++KVWERDSG L ++S+ K FMGAVLEWMPSGA I
Sbjct: 180 FISWRGDGKYFATISEASESSALLKKIKVWERDSGALHSTSDSKVFMGAVLEWMPSGAKI 239
Query: 238 AAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297
AAVYDRK EN+CP I FYERNGL RSSF I E D+TVE LKWNC SDL+A+VVR E+YD
Sbjct: 240 AAVYDRKVENRCPDIAFYERNGLVRSSFSIKEAADATVESLKWNCGSDLVASVVRCEKYD 299
Query: 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME 357
+VK+ F SNNHWYLK+E+RY R+DG+R MW P KPLQLICWT GQIT YNF W +AV E
Sbjct: 300 AVKLWFLSNNHWYLKHEVRYSRQDGVRLMWDPVKPLQLICWTFGGQITIYNFTWISAVTE 359
Query: 358 NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL 417
NSTALVID SKILVTPLSLSLMPPP++LFSLKFP+AV ++A YS +SKN +AA LSDG L
Sbjct: 360 NSTALVIDDSKILVTPLSLSLMPPPLHLFSLKFPSAVRDLALYSNNSKNRVAAFLSDGSL 419
Query: 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477
VV+LP PD EDLE EF VEA ISET FGS ++L WL SH+LL+VSH+G HSN
Sbjct: 420 GVVELPDPDTWEDLEEKEFTVEASISETGFGSFVNLTWLDSHILLAVSHYGFSHSNCASH 479
Query: 478 ATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS 537
+++ EDGL GF QEIEL CSEDHV L+T +GWHAK+S + LEGLVI IAPN AKK S
Sbjct: 480 SSMGEDGLSGFCLQEIELLCSEDHVPSLVTGSGWHAKISHRNYLEGLVIGIAPNPAKKRS 539
Query: 538 AFLQFHGGKISEYMSRVGL--TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDD 595
AF+QF GG I EY S +GL TGG+ HDD SF SSCPWM+V +G LKPLLFGLDD
Sbjct: 540 AFVQFDGGNIVEYTSMLGLAVTGGSTKHDDMSFSSSCPWMSVAKASDSGSLKPLLFGLDD 599
Query: 596 GGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYEN 655
GRLH GK++CNNCSSFS YS A Q ++HLIL+TKQ+ LF+V+I DILHGE+ LKYEN
Sbjct: 600 IGRLHFGGKVLCNNCSSFSCYSNLADQVVTHLILSTKQDFLFVVEIGDILHGEIELKYEN 659
Query: 656 FTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVN 715
F H GNRRKEEN+++INIWERGAK+IGVLHGD+AAVI+QT RGNLE ++PRKLVL SIVN
Sbjct: 660 FVHTGNRRKEENMNFINIWERGAKIIGVLHGDDAAVIIQTTRGNLESIHPRKLVLASIVN 719
Query: 716 ALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNE 775
ALIQ RFRDAL++VRRHRI+FNVIVD+CGWQ FLQSASEFV+QVNNLSYITEF+C+I NE
Sbjct: 720 ALIQRRFRDALLLVRRHRIDFNVIVDYCGWQTFLQSASEFVKQVNNLSYITEFICSIKNE 779
Query: 776 NITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLL-AIRKALEEKVPESPSRE 834
NI ETLYK ++S PC+ D+ AKD + + + S LL AIRK LEE+V ESP+RE
Sbjct: 780 NIMETLYK--NYISTPCQNRAGDVQAKDVVSFDSSSKVSSLLLAIRKGLEEQVTESPARE 837
Query: 835 LCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAV 894
LCILTTLARSDPP LEEAL+RIK+IRE ELLGS +PRR SYPSAEEALKHLLWL+DS+AV
Sbjct: 838 LCILTTLARSDPPMLEEALKRIKVIREMELLGSSDPRRTSYPSAEEALKHLLWLSDSDAV 897
Query: 895 YEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHI 954
+EAALGLYDLNLAAIVA+NSQRDPKEFLPYLQELE MP L+M Y IDLRL ++E AL+HI
Sbjct: 898 FEAALGLYDLNLAAIVAVNSQRDPKEFLPYLQELERMPSLVMCYNIDLRLHQYEKALRHI 957
Query: 955 VSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYF 1014
VS GD+Y++DC++LM K QLFPLGL++ITDPAK QVLEAW DHLSD KCFEDAA TY
Sbjct: 958 VSAGDAYYSDCMSLMNKNPQLFPLGLQMITDPAKKMQVLEAWGDHLSDEKCFEDAAITYL 1017
Query: 1015 CCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074
CCSSL+ A+KAYRA G+WSGVLTVAGLLKL KDE+ +LA +LCEELQALGKPGEAAKIAL
Sbjct: 1018 CCSSLKNALKAYRACGDWSGVLTVAGLLKLEKDELMQLAHDLCEELQALGKPGEAAKIAL 1077
Query: 1075 DYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKV 1134
+YCGDV +GI+LLI ARDWEEALRVAFMHR+EDL+ +VK+A+L+CAS+LI E+KEGLEKV
Sbjct: 1078 EYCGDVNSGINLLISARDWEEALRVAFMHRQEDLVLEVKNAALDCASTLISEHKEGLEKV 1137
Query: 1135 GKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
GKYLTRYLAVRQRRLLL AKLQSE+RS+NDLDDDTVSE SS FSGMS YTTG
Sbjct: 1138 GKYLTRYLAVRQRRLLLAAKLQSEERSINDLDDDTVSEASSNFSGMSAYTTG 1189
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575094|ref|XP_002528452.1| conserved hypothetical protein [Ricinus communis] gi|223532128|gb|EEF33935.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1720 bits (4454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1191 (71%), Positives = 983/1191 (82%), Gaps = 13/1191 (1%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +E+ LN+ELQS E + FSA+DIE+NRLFFASS N IY+ QLSSF N A K
Sbjct: 1 MKNLKLYSELSLNVELQSNQEAILFSAIDIERNRLFFASSTNLIYATQLSSFHNGNAWRK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+++ A + IDLE GD IT+FDYLMEKEALIVGTS+G++LL++VD NA EVVG+VEGGV+
Sbjct: 61 SSLQAGVHPIDLEDGDFITSFDYLMEKEALIVGTSNGVMLLYNVDDNAMEVVGQVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE-LAEGFDVHEPELSSSFSFKSPI 179
I+PSPDGDLLG+ TG GQILVMTHDWDLLYEN LEE +G DV + L SF I
Sbjct: 121 CIAPSPDGDLLGIVTGLGQILVMTHDWDLLYENALEEDQLDGVDVRKDLLHYSFY---SI 177
Query: 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239
SWRGDGKY ATLSE N S L+KRLK+WERDSG L A+S+ KAFMGAVL+WMPSGA IAA
Sbjct: 178 SWRGDGKYLATLSEISNFSSLNKRLKIWERDSGALHAASDPKAFMGAVLDWMPSGAKIAA 237
Query: 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 299
V DR++E++CP IVFYERNGL RSSF+I+E +D+TVELLKWNC SDLLA+VVR ++YDSV
Sbjct: 238 VCDRRAEHRCPDIVFYERNGLFRSSFNISELVDATVELLKWNCSSDLLASVVRCDKYDSV 297
Query: 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359
K+ FFSNNHWYLK+E RY R+DG+RFMW P KPL+ ICWTL+GQIT YNF+W +AVMENS
Sbjct: 298 KVWFFSNNHWYLKHETRYPRKDGVRFMWDPIKPLEFICWTLEGQITIYNFMWISAVMENS 357
Query: 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419
TALVID S ILVTPLSLSLMPPP++LF+LKFP+AV ++AFY K SKN +AA LSDGCLCV
Sbjct: 358 TALVIDNSNILVTPLSLSLMPPPLHLFNLKFPSAVRDVAFYPKKSKNFVAAFLSDGCLCV 417
Query: 420 VDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479
V+LP D E+L+G E +VEACIS+T G++ HL WL SH+LL+VSH+G HSN F +
Sbjct: 418 VELPEFDTWEELDGKEIMVEACISDTVLGTLAHLTWLDSHVLLAVSHYGFSHSNCFSYTS 477
Query: 480 LNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539
L E+ GFY QEIE+ACSEDHV GL+T +GWHAKVS LE LVI I PN ++ SAF
Sbjct: 478 LGEEEHHGFYLQEIEIACSEDHVPGLVTGSGWHAKVSHINYLEDLVIGITPNPVERCSAF 537
Query: 540 LQFHGGKISEYMSRVGL--TGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGG 597
+QF GKI EY S +G GGA H +F SSCPWM V+ +G L PLLFGLDD G
Sbjct: 538 VQFDAGKICEYTSTLGFGTPGGATEHYSMNFSSSCPWMTAVN---SGSLNPLLFGLDDIG 594
Query: 598 RLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFT 657
RLH GKI+CNNCSS SFYS A Q ++HLILATKQ+ LFIVDISDILH EL KYE F
Sbjct: 595 RLHFGGKILCNNCSSLSFYSNLADQVITHLILATKQDFLFIVDISDILHEELESKYEKFV 654
Query: 658 HVGNRRKEE-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNA 716
HV NRR+EE N+++I IWERGAK+IG+LHGD A VI+QT RGNLEC+YPRKLVL+SIVNA
Sbjct: 655 HVDNRRREEQNMNFIQIWERGAKIIGILHGDAATVIIQTIRGNLECIYPRKLVLSSIVNA 714
Query: 717 LIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNEN 776
LIQGRFRDAL+MVRRHRI+FN I+DHCGWQ+FLQSASEFV QVNNLSYITEFVCA+ NEN
Sbjct: 715 LIQGRFRDALLMVRRHRIDFNFILDHCGWQSFLQSASEFVNQVNNLSYITEFVCAVKNEN 774
Query: 777 ITETLYKKFQFLSLPCREEFKDLPAKDFKASECN-KVSSVLLAIRKALEEKVPESPSREL 835
I E LY+ ++S P ++ + + +D + + N KVSSVLLAIRKAL E VPE+P+REL
Sbjct: 775 IMEKLYR--NYISFPSKKGVEVIQGQDLRGFDANNKVSSVLLAIRKALVEIVPETPAREL 832
Query: 836 CILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVY 895
CILTTLARSDPPALEEALERIK+IRE ELLGS++PRR S+PSAEEALKHLLWL+DSEAV+
Sbjct: 833 CILTTLARSDPPALEEALERIKVIRELELLGSNDPRRTSFPSAEEALKHLLWLSDSEAVF 892
Query: 896 EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 955
EAALGLYDL+LAAIVALNS+RDPKEFLPYLQELE MP L+M Y IDLRLQRFE ALKHI+
Sbjct: 893 EAALGLYDLHLAAIVALNSERDPKEFLPYLQELERMPSLIMHYNIDLRLQRFEKALKHII 952
Query: 956 SMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 1015
S GD+Y++DC+NL+KK QLFPLGL+LITD AK + LEAW DHLSD KCFEDAATTY C
Sbjct: 953 SAGDAYYSDCMNLLKKNPQLFPLGLQLITDHAKRMEALEAWGDHLSDKKCFEDAATTYLC 1012
Query: 1016 CSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075
CS L KA+KAYRA GNWSGVLTVAGLLKL K V +LA EL EELQALGKPGEAAKIAL+
Sbjct: 1013 CSCLGKALKAYRACGNWSGVLTVAGLLKLDKAAVLQLATELREELQALGKPGEAAKIALE 1072
Query: 1076 YCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVG 1135
YCGDV+ GISLLI+ARDWEEALRVAFMH EDLI+ VK AS+E A++LI EY+EG EKVG
Sbjct: 1073 YCGDVSGGISLLINARDWEEALRVAFMHMGEDLISDVKIASVEGANTLISEYEEGREKVG 1132
Query: 1136 KYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
KYLTRYLAVRQRRLLL AKLQSEDRS+NDLD DTVSE SS FSGMS YTTG
Sbjct: 1133 KYLTRYLAVRQRRLLLAAKLQSEDRSVNDLDYDTVSEASSNFSGMSAYTTG 1183
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224100935|ref|XP_002312075.1| predicted protein [Populus trichocarpa] gi|222851895|gb|EEE89442.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1705 bits (4416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1207 (70%), Positives = 983/1207 (81%), Gaps = 25/1207 (2%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +E+ NLELQS+ E+L FSA D E+NRLFFASS N IY+A LSSFQN ++
Sbjct: 1 MKNLKLHSEISQNLELQSQQEVLLFSAFDFERNRLFFASSNNFIYTADLSSFQNGKSKSL 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
S+ I I+LE GD ITAFDYL+EKEALI+GT +GLLLLH+VD N+TE+VG+V GGV+
Sbjct: 61 LLASSVINQIELEDGDLITAFDYLLEKEALIIGTENGLLLLHNVDDNSTEIVGQVNGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL-AEGFDVHEP------------ 167
ISPSPDGDLL + TGF Q+LVMTHDWDLL+E + + G DV +
Sbjct: 121 CISPSPDGDLLAILTGFRQMLVMTHDWDLLHETAVGDGDGAGLDVSKDLSLLFYGLVGLW 180
Query: 168 ---ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224
E F+S +SWRGDGKYFATLSE +SS + KR+KVWERDSG L ++S+ K FM
Sbjct: 181 ISGEFDGKDMFESSVSWRGDGKYFATLSEASDSSLMFKRIKVWERDSGALHSTSDSKIFM 240
Query: 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS 284
GAVLEWMPSGA IAAVYDRK EN+CP IVFYE+NGL RSSF I E +D+ VE LKWNC S
Sbjct: 241 GAVLEWMPSGAKIAAVYDRKVENRCPDIVFYEKNGLVRSSFSIKEAVDAKVESLKWNCSS 300
Query: 285 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344
DLLA+VVR E+YD+VK+ FFSNNHWYLK+E+RY R+DG+RFMW P KPLQ ICWTL GQI
Sbjct: 301 DLLASVVRCEKYDAVKVWFFSNNHWYLKHEVRYSRQDGVRFMWDPVKPLQFICWTLGGQI 360
Query: 345 TTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSS 404
T+YNF W +AV+ENS AL IDGSKILVTPLSL LMPPP++LFSLKFP AV ++A YS +S
Sbjct: 361 TSYNFAWNSAVVENSIALAIDGSKILVTPLSLLLMPPPLHLFSLKFPRAVRDVALYSNNS 420
Query: 405 KNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464
KN +AA LSDG L VV+LP PD E+LE EF VEA ISET FGS +HL WL SH+LL+V
Sbjct: 421 KNSVAAFLSDGSLGVVELPDPDTWEELEEKEFGVEASISETGFGSFVHLTWLDSHILLAV 480
Query: 465 SHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGL 524
SH+G S +++ EDGL GFY QEIEL CSEDHV L+T +GWHA++S + LEGL
Sbjct: 481 SHYGFTQSTCASDSSMGEDGLSGFYLQEIELVCSEDHVPSLVTGSGWHARISHRNYLEGL 540
Query: 525 VIAIAPNNAKKYSAFLQFHGGKISEYMSRVGL--TGGALTHDDASFPSSCPWMNVVSVGT 582
VI IAPN AKK SAF+QF GGKI EY S +GL TGG+ HDD SF SSCPWM+ V
Sbjct: 541 VIGIAPNPAKKCSAFVQFDGGKIVEYASILGLAGTGGSTKHDDMSFSSSCPWMSAAQVSD 600
Query: 583 NGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDIS 642
+G LKPLLFGLDD GRLH GK++CNNCSSFS YS A Q ++HLIL+TKQ+ LF V+IS
Sbjct: 601 SGSLKPLLFGLDDIGRLHFGGKVLCNNCSSFSLYSNLADQVITHLILSTKQDFLFAVEIS 660
Query: 643 DILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLEC 702
DILHGEL LKYENF H GNRRKEEN+++INIWERGAK+IGVLHGD AAV++QT RGNLEC
Sbjct: 661 DILHGELELKYENFVHTGNRRKEENMNFINIWERGAKIIGVLHGDAAAVVIQTTRGNLEC 720
Query: 703 MYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNL 762
+YPRKLVL SIVNALIQ RFRDAL++VR+HRI+FNVIVDHCGWQ F+QSASEFV+QVNNL
Sbjct: 721 IYPRKLVLASIVNALIQRRFRDALLLVRQHRIDFNVIVDHCGWQTFIQSASEFVKQVNNL 780
Query: 763 SYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKD---FKASECNKVSSVLLAI 819
SYITEF+C+I NENI ETLYK ++S P + D+ AKD F AS +KVS++LLAI
Sbjct: 781 SYITEFICSIKNENIMETLYK--NYISTPYQNGGGDVQAKDVMGFDAS--SKVSALLLAI 836
Query: 820 RKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAE 879
RKALEE+V ESP+RELCILTTLARSDPPALEEALERIK+IRE ELLGS PRRMSYPSAE
Sbjct: 837 RKALEEQVSESPARELCILTTLARSDPPALEEALERIKVIREMELLGSSGPRRMSYPSAE 896
Query: 880 EALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYT 939
EALKHLLWL+DS+AV+EAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP L+M Y
Sbjct: 897 EALKHLLWLSDSDAVFEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELERMPSLIMSYN 956
Query: 940 IDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADH 999
IDLRL RFE AL+HIVS GD+Y++DC++LM K QLFPLGL+LITDPAK Q LEAW DH
Sbjct: 957 IDLRLHRFEKALRHIVSAGDAYYSDCMDLMNKNPQLFPLGLQLITDPAKKMQALEAWGDH 1016
Query: 1000 LSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE 1059
LSD KCFEDAATT+ CCSSL+ A+KAYRA GNWSGVL+VAGLLK+ K+E+ +LA +LCEE
Sbjct: 1017 LSDEKCFEDAATTFLCCSSLKNALKAYRACGNWSGVLSVAGLLKMEKNEIMQLAYDLCEE 1076
Query: 1060 LQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLEC 1119
LQALGKP +AAKIAL+Y GDV +GI+LLI RDWEEALRVAFMH +E+L+ VK+A+L+C
Sbjct: 1077 LQALGKPRDAAKIALEYLGDVNSGINLLISGRDWEEALRVAFMHSQENLVLTVKNAALDC 1136
Query: 1120 ASSLIGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSG 1179
A +LI EYKEGLEKVGKYL RYLAVRQRRLLL AKLQSE+RSMNDLDDDTVSE SS FSG
Sbjct: 1137 ARTLISEYKEGLEKVGKYLARYLAVRQRRLLLAAKLQSEERSMNDLDDDTVSEASSNFSG 1196
Query: 1180 MSVYTTG 1186
MS YTTG
Sbjct: 1197 MSAYTTG 1203
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147843466|emb|CAN82069.1| hypothetical protein VITISV_010008 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1684 bits (4360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1183 (70%), Positives = 958/1183 (80%), Gaps = 46/1183 (3%)
Query: 6 LCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISA 65
L +++ LNLEL+S +E++ FSA DIE+NRL FASS N IY+ QL S QNER KT+ +
Sbjct: 259 LYSDLSLNLELRSAEEVVSFSAFDIERNRLVFASSDNFIYTTQLPSSQNERVWGKTSSYS 318
Query: 66 EIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPS 125
++E IDLEPGD ITAFDYLMEKEALIVGTSSGLLLLH+VD NA EVVGRVEGGV+ ISPS
Sbjct: 319 KVEPIDLEPGDFITAFDYLMEKEALIVGTSSGLLLLHNVDDNAIEVVGRVEGGVKCISPS 378
Query: 126 PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185
PDGDLLG+ TGFGQI+VMTHDWD+LYEN L++L E D+ EP SS + ISWRGDG
Sbjct: 379 PDGDLLGIITGFGQIVVMTHDWDVLYENTLDDLPEDVDLSEPTFSSCY-----ISWRGDG 433
Query: 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245
KYF TL E SS HK+LKVWERD+G L A+SE KAFMG VL+WMPSGA IA+VYD+K
Sbjct: 434 KYFVTLGELHTSSS-HKKLKVWERDTGALHAASESKAFMGTVLDWMPSGAKIASVYDKKV 492
Query: 246 ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305
EN+CP IVF+ERNGLERSSF INE D+ VE+LKWNC SDLLAAVVR E +DSVKI FFS
Sbjct: 493 ENECPLIVFFERNGLERSSFSINELTDAKVEILKWNCSSDLLAAVVRSETFDSVKIWFFS 552
Query: 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365
NNHWYLK EIRYLR DG++FMWHPTKPLQLICWTL G++T +F+W TAVMENSTALVID
Sbjct: 553 NNHWYLKQEIRYLREDGVKFMWHPTKPLQLICWTLGGEVTVNSFVWVTAVMENSTALVID 612
Query: 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425
SKIL TPLSLSLMPPPMYLF+LKF + + ++AFY+K+SKN LAA LSDGCLCV +LP
Sbjct: 613 ESKILATPLSLSLMPPPMYLFNLKFSSTIRDIAFYTKNSKNLLAAFLSDGCLCVAELPPL 672
Query: 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGL 485
D E+LEG E V+A SET FGS +HLIWL +H+LL VSH G HSNYF ++D L
Sbjct: 673 DTWEELEGKELSVDASSSETIFGSFVHLIWLDAHILLGVSHFGFSHSNYFSQTPSSKDML 732
Query: 486 LGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGG 545
G +Q E A GWHAK++ QIPL+GLVI +APN KK SAF+QF GG
Sbjct: 733 HGIMSQVWEPA------------PGWHAKITNQIPLDGLVIGLAPNPTKKCSAFVQFDGG 780
Query: 546 KISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKI 605
K+ EY+ +G+ GGA +D S SSCPWM+VV VG +G +PLLFGLDD GRLHV GKI
Sbjct: 781 KVFEYIPNLGIMGGAPKTEDMSLSSSCPWMSVVPVGDSGSSRPLLFGLDDNGRLHVGGKI 840
Query: 606 VCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKE 665
+CNNC SFSFYS SA A++HLILATKQ+LLF++DI DIL G+L +KYENF H GN+R+E
Sbjct: 841 ICNNCRSFSFYSNSADLAITHLILATKQDLLFVIDIDDILDGKLEVKYENFIHAGNKRRE 900
Query: 666 E-NISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRD 724
E N ++I IWERGAKVIGVLHGDEAAVILQT RGNLEC+YPRKLVL SI+NAL+Q RFRD
Sbjct: 901 EDNRNFITIWERGAKVIGVLHGDEAAVILQTARGNLECIYPRKLVLASIINALVQSRFRD 960
Query: 725 ALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKK 784
L+MVRRHRI+FNVIVDHCGWQAFLQSA+EFVRQVNNLSYITEFVC+I NE ITETLYK
Sbjct: 961 GLLMVRRHRIDFNVIVDHCGWQAFLQSAAEFVRQVNNLSYITEFVCSIKNETITETLYK- 1019
Query: 785 FQFLSLPCREEFKDLPAKDFKA-SECNKVSSVLLAIRKALEEKVPESPSRELCILTTLAR 843
++SL C E KD+ A+DFK + NKVSSVL++IRKALEE+VPESP+RELCILTTLAR
Sbjct: 1020 -NYISLLCPREAKDVQARDFKGPNNNNKVSSVLMSIRKALEEQVPESPARELCILTTLAR 1078
Query: 844 SDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD 903
SDPPALEEALERIK+IRE ELLGSD+PRR SYPSAEEALKHLLWL+DSEAVYEA+LGLYD
Sbjct: 1079 SDPPALEEALERIKLIREMELLGSDDPRRKSYPSAEEALKHLLWLSDSEAVYEASLGLYD 1138
Query: 904 LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHA 963
L+LAAIVALNSQRDPKEFLP+LQELE MP LMRY ID+RL+R+E+ALKHI S GD+Y+A
Sbjct: 1139 LHLAAIVALNSQRDPKEFLPFLQELERMPVHLMRYNIDIRLRRYESALKHIASAGDAYYA 1198
Query: 964 DCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAM 1023
DCLNLMK+ QLFPLGL+LITDPAK ++VLEAW DH SD KCFEDAATTY CCS LEKA+
Sbjct: 1199 DCLNLMKENPQLFPLGLQLITDPAKKKEVLEAWGDHFSDEKCFEDAATTYLCCSGLEKAL 1258
Query: 1024 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNG 1083
KAYRA GNW GV+TVAGLLKLGK+E+ +LA ELCEELQALGKPGEAAKIALDYCGDV +
Sbjct: 1259 KAYRACGNWGGVMTVAGLLKLGKEEIVQLANELCEELQALGKPGEAAKIALDYCGDVKSA 1318
Query: 1084 ISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLA 1143
I+LL+ ++ + C + +EGLEKVGKYL RYLA
Sbjct: 1319 INLLVQC-------------------ARLGGGTKGCVYA-----QEGLEKVGKYLARYLA 1354
Query: 1144 VRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
VRQRRLLL AKLQSEDRS+NDLDDDT SE SS+FSGMS YTTG
Sbjct: 1355 VRQRRLLLAAKLQSEDRSINDLDDDTASEASSSFSGMSAYTTG 1397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449483884|ref|XP_004156721.1| PREDICTED: elongator complex protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1615 bits (4181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 784/1197 (65%), Positives = 952/1197 (79%), Gaps = 10/1197 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
MNNLKL +E L LELQ+ E++QFSA DIE+NRLFF SSAN IY+ QL+SF NER
Sbjct: 1 MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFIYTTQLTSFHNERMKSV 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+ AE+ ID+E GD +T+FDYLMEKEALIVGT +G LLL SVDGN TE+VG VEGGV+
Sbjct: 61 AMLPAEVHPIDVETGDYVTSFDYLMEKEALIVGTRNGALLLFSVDGNGTEIVGMVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSPDGDLL + +G QILVMTHDWDL+YEN LE+ EG EP S F+ IS
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG----EPNFSEQNDFEGSIS 176
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYF TLS+ S+ K+LK+WERD G++ ASSE+K F+G VLEWMPSGA IAAV
Sbjct: 177 WRGDGKYFVTLSDVETSNTALKKLKIWERDGGSMHASSEVKTFVGGVLEWMPSGAKIAAV 236
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
YD+KSE++C ++VF+ERNGLERSSF INE+I + VELLKWNC SDLLA +VR E YDS+K
Sbjct: 237 YDKKSESECQTVVFFERNGLERSSFCINERIGAKVELLKWNCSSDLLAGIVRCESYDSLK 296
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360
I FFSNNHWYLK+EIRY ++D +RF+W PT+PLQL CWT++GQIT +NF+WT+++MENST
Sbjct: 297 IWFFSNNHWYLKHEIRYSKKDVVRFVWDPTRPLQLFCWTVNGQITMHNFMWTSSIMENST 356
Query: 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420
ALVID +KILVTPLSLSLMPPP+YLFSLKF +AV ++AF+SK+ KNCLAA LSDG LC+V
Sbjct: 357 ALVIDDAKILVTPLSLSLMPPPLYLFSLKFSSAVRDVAFFSKNFKNCLAAFLSDGLLCIV 416
Query: 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL 480
+ PA D+ ++LEG EF VEA SE+ FGS H++WL H LL VSH+G NY +
Sbjct: 417 EFPAVDVWDELEGKEFNVEASTSESTFGSFQHIVWLDLHKLLVVSHYGSDDYNYVSQGSP 476
Query: 481 NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL 540
NE+ GF EI+L +DHV G TC+GW A++S + +EG V+ +A N A+ SAF+
Sbjct: 477 NEEPF-GFCLLEIDLKSPKDHVLGSPTCSGWGARISNRKFIEGPVVCVASNPAENCSAFI 535
Query: 541 QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH 600
Q +GGK+ +Y SR+G G L +D SF SSCPWM+V V NG LKPLLFGLDD GRLH
Sbjct: 536 QLNGGKVLKYASRLGFPGEFLKQEDKSFSSSCPWMSVALVDNNGLLKPLLFGLDDVGRLH 595
Query: 601 VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG 660
++G +VCNNCS FSFYS GQ +HLIL TKQ+LL I+DISD+LH ++ KY F
Sbjct: 596 LNGMVVCNNCSGFSFYSNLGGQITTHLILGTKQDLLCILDISDLLHEKIEEKYNFFQASS 655
Query: 661 NRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQG 720
++EEN ++I IWE+ AK++GVLHGD AAVILQT RGNLEC+YPRKLVL SI NALIQG
Sbjct: 656 KCKEEENRNFIYIWEKSAKIVGVLHGDAAAVILQTARGNLECIYPRKLVLASITNALIQG 715
Query: 721 RFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET 780
RFRDAL+MVRRHRI+FNVI+D+CG QAF+QSA EFV+QVNN +YITEFVCAI N+++T+T
Sbjct: 716 RFRDALLMVRRHRIDFNVIIDYCGLQAFIQSAVEFVKQVNNFNYITEFVCAIKNKDVTKT 775
Query: 781 LYKKFQFLSLPCREEFKDLPAKDFKASEC--NKVSSVLLAIRKALEEKVPESPSRELCIL 838
LYK F+S C ++ K ++ K S C KVS VLLAIR+A+EE + ESP+RELCIL
Sbjct: 776 LYK--NFISSSCTDDNKVGAPRESKDS-CVKTKVSLVLLAIRRAVEEHMMESPARELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898
TTLARSDPPALEEALERIK+IRE ELL SD PRR SYPS+EEALKHLLWL+D +AV+E A
Sbjct: 833 TTLARSDPPALEEALERIKVIREIELLNSDVPRRTSYPSSEEALKHLLWLSDPDAVFETA 892
Query: 899 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
LGLYDL LAAIVA+NS+RDPKEF+PYLQELE MP LLM Y +DLRL RFE ALKHIVS G
Sbjct: 893 LGLYDLKLAAIVAINSERDPKEFIPYLQELEKMPFLLMCYNVDLRLSRFEKALKHIVSAG 952
Query: 959 DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS 1018
+ +DC+NLMKK QLF LGL+LITD AK + VLEAW D+LSD KCFEDAA TY CCS+
Sbjct: 953 EDNFSDCINLMKKKPQLFSLGLQLITDNAKRKLVLEAWGDYLSDEKCFEDAAETYLCCSN 1012
Query: 1019 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078
LEKA+K+YRASGNWS V VAG LK+ +DE+ +LA ELCEELQALGKPGEAAKIAL+YCG
Sbjct: 1013 LEKALKSYRASGNWSQVFIVAGFLKMSEDEILQLAHELCEELQALGKPGEAAKIALEYCG 1072
Query: 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYL 1138
D+ G++LLI+ARDWEE LR+AF ++REDL+T++K+AS ECAS LIGEY+EGLEKVGKYL
Sbjct: 1073 DINRGMALLINARDWEEGLRIAFRYQREDLVTELKNASAECASLLIGEYEEGLEKVGKYL 1132
Query: 1139 TRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGYVNYTSISF 1195
TRYLAVRQRRLLL AK+++E+ SMN+LDDDT SE SS SGMS Y+ G ++++
Sbjct: 1133 TRYLAVRQRRLLLAAKIKAEESSMNNLDDDTASEASSNLSGMSAYSAGSRRSSAVTM 1189
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449974|ref|XP_004142739.1| PREDICTED: elongator complex protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1607 bits (4162), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1197 (65%), Positives = 950/1197 (79%), Gaps = 10/1197 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
MNNLKL +E L LELQ+ E++QFSA DIE+NRLFF SSAN IY+ QL+SF NER
Sbjct: 1 MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFIYTTQLTSFHNERMKSV 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+ AE+ ID+E GD +T+FDYLMEKEALIVGT +G LLL SVDGN TE+VG VEGGV+
Sbjct: 61 AMLPAEVHPIDVETGDYVTSFDYLMEKEALIVGTRNGALLLFSVDGNGTEIVGMVEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSPDGDLL + +G QILVMTHDWDL+YEN LE+ EG EP S F+ IS
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG----EPNFSEQNDFEGSIS 176
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYF TLS+ S+ K+LK+WERD G++ ASSE+K F+G VLEWMPSGA IAAV
Sbjct: 177 WRGDGKYFVTLSDVETSNTALKKLKIWERDGGSMHASSEVKTFVGGVLEWMPSGAKIAAV 236
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300
YD+KSE++C ++VF+ERNGLERSSF INE+I + VELLKWNC SDLLA +VR E YDS+K
Sbjct: 237 YDKKSESECQTVVFFERNGLERSSFCINERIGAKVELLKWNCSSDLLAGIVRCESYDSLK 296
Query: 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360
I FFSNNHWYLK+EIRY ++D +RF+W PT+PLQL CWT++GQIT +NF+WT+++MENST
Sbjct: 297 IWFFSNNHWYLKHEIRYSKKDVVRFVWDPTRPLQLFCWTVNGQITMHNFMWTSSIMENST 356
Query: 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420
ALVID +KILVTPLSLSLMPPP+YLFSLKF +AV ++AF+SK+ KNCLAA LSDG LC+V
Sbjct: 357 ALVIDDAKILVTPLSLSLMPPPLYLFSLKFSSAVRDVAFFSKNFKNCLAAFLSDGLLCIV 416
Query: 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATL 480
+ PA D+ ++LEG EF VEA SE+ FGS H++WL H LL VSH+G NY +
Sbjct: 417 EFPAVDVWDELEGKEFNVEASTSESTFGSFQHIVWLDLHKLLVVSHYGSDDYNYVSQGSP 476
Query: 481 NEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFL 540
NE+ GF EI+L +DHV G TC+GW A++S + +EG V+ +A N A+ SAF+
Sbjct: 477 NEEPF-GFCLLEIDLKSPKDHVLGSPTCSGWGARISNRKFIEGPVVCVASNPAENCSAFI 535
Query: 541 QFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLH 600
Q +GGK+ +Y SR+G G L +D SF SSCPWM+V V NG LKPLLFGLDD GRLH
Sbjct: 536 QLNGGKVLKYASRLGFPGEFLKQEDKSFSSSCPWMSVALVDNNGLLKPLLFGLDDVGRLH 595
Query: 601 VSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVG 660
++G +VCNNCS FSFYS Q +HLIL TKQ+LL I+DISD+LH ++ KY F
Sbjct: 596 LNGMVVCNNCSGFSFYSNLGDQITTHLILGTKQDLLCILDISDLLHEKIEEKYNFFQASS 655
Query: 661 NRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQG 720
++EEN ++I IWE+ AK++GVLHGD AAVILQT RGNLEC+YPRKLVL SI NALIQG
Sbjct: 656 KCKEEENRNFIYIWEKSAKIVGVLHGDAAAVILQTARGNLECIYPRKLVLASITNALIQG 715
Query: 721 RFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITET 780
RFRDAL+MVRRHRI+FNVI+D+CG QAF+QSA EFV+QVNN +YITEFVCAI N+++T+T
Sbjct: 716 RFRDALLMVRRHRIDFNVIIDYCGLQAFIQSAVEFVKQVNNFNYITEFVCAIKNKDVTKT 775
Query: 781 LYKKFQFLSLPCREEFKDLPAKDFKASEC--NKVSSVLLAIRKALEEKVPESPSRELCIL 838
LYK F+S C ++ K ++ K S C KVS VLLAIR+A+EE + ESP+RELCIL
Sbjct: 776 LYK--NFISSSCTDDNKVGAPRESKDS-CVKTKVSLVLLAIRRAVEEHMMESPARELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAA 898
TTLARSDPPALEEALERIK+I E ELL SD PRR SYPS+EEALKHLLWL+D +AV+E A
Sbjct: 833 TTLARSDPPALEEALERIKVICEIELLNSDVPRRTSYPSSEEALKHLLWLSDPDAVFETA 892
Query: 899 LGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
LGLYDL LAAIVA+NS+RDPKEF+PYLQELE MP LLM Y +DLRL RFE ALKHIVS G
Sbjct: 893 LGLYDLKLAAIVAINSERDPKEFIPYLQELEKMPFLLMCYNVDLRLSRFEKALKHIVSAG 952
Query: 959 DSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS 1018
+ +DC+NLMKK QLF LGL+LITD AK + VLEAW D+LSD KCFEDAA TY CCS+
Sbjct: 953 EDNFSDCINLMKKKPQLFSLGLQLITDNAKRKLVLEAWGDYLSDEKCFEDAAETYLCCSN 1012
Query: 1019 LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078
LEKA+K+YRASGNWS V VAG LK+ +DE+ +LA ELCEELQALGKPGEAAKIAL+YCG
Sbjct: 1013 LEKALKSYRASGNWSQVFIVAGFLKMSEDEILQLAHELCEELQALGKPGEAAKIALEYCG 1072
Query: 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYL 1138
D+ G++LLI+ARDWEE LR+AF ++REDL+T++K+AS ECAS LIGEY+EGLEKVGKYL
Sbjct: 1073 DINRGMALLINARDWEEGLRIAFRYQREDLVTELKNASAECASLLIGEYEEGLEKVGKYL 1132
Query: 1139 TRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGYVNYTSISF 1195
TRYLAVRQRRLLL AK+++E+ SMN+LDDDT SE SS SGMS Y+ G ++++
Sbjct: 1133 TRYLAVRQRRLLLAAKIKAEESSMNNLDDDTASEASSNLSGMSAYSAGSRRSSAVTM 1189
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811479|ref|XP_002873623.1| aba-overly sensitive 1 [Arabidopsis lyrata subsp. lyrata] gi|297319460|gb|EFH49882.1| aba-overly sensitive 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1531 bits (3964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/1190 (63%), Positives = 919/1190 (77%), Gaps = 15/1190 (1%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EV N++L S +E++QF+A DI+Q+RLFFASSAN +YS QLSSFQN R+
Sbjct: 1 MKNLKLYSEVSQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYSLQLSSFQNGRSG-- 58
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+A+ AE+ ID+EPGD ITAFDYL EKE+L++GTS GLLLLH+V+ + TE+VG +EGGV+
Sbjct: 59 SALPAEVCIIDMEPGDFITAFDYLAEKESLLIGTSHGLLLLHNVESDVTELVGNIEGGVK 118
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISPSP GDLLG+ TG GQ+LVMT+DW L+YE L E+ +G V E + S IS
Sbjct: 119 CISPSPTGDLLGLITGLGQLLVMTYDWGLMYERALGEVPDGGYVREADDLSVTCGGISIS 178
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSGTLQ+SSE K F +LEWMPSGA IAAV
Sbjct: 179 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGTLQSSSETKEFTQGILEWMPSGAKIAAV 238
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 239 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESFETLKWNSASDLLAGVVSCKTYDA 298
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ N++W TAVME+
Sbjct: 299 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRNYMWVTAVMED 358
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVTPLSLSLMPPP YLFSL F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 359 STAFVIDNSKILVTPLSLSLMPPPTYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 418
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
V+ PAP+ EDLEG +F+VE TA GS +HL+WL +H LL VS +G H+
Sbjct: 419 FVEFPAPNTWEDLEGKDFIVEISDCNTALGSFVHLLWLDAHSLLCVSAYGSSHNKCLSSG 478
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
E L G Y QE+E+ C EDHV +TC+G+ A V+ Q LE V+A+A N +K+ SA
Sbjct: 479 AY-ETELHGSYLQEVEVVCHEDHVSDQVTCSGFKASVAFQTLLESPVLALAWNPSKRDSA 537
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR G+ ++ D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 538 FVEFEGGKVLGYASRSGIMESRISDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 597
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L+++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L G++AL F
Sbjct: 598 LYINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLQGDVALGNVYFVI 657
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAV+LQT RGNLEC+YPRKLVL+SI N L
Sbjct: 658 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVVLQTMRGNLECIYPRKLVLSSITNVLA 717
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DAL +VRRHRI+FNVIVD GWQAFLQSA EFV QVNNL+++TEFVCA+ NE++T
Sbjct: 718 QQRFKDALNLVRRHRIDFNVIVDLYGWQAFLQSAVEFVEQVNNLNHVTEFVCAMKNEDVT 777
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASEC-NKVSSVLLAIRKALEEKVPESPSRELCI 837
ETLYKKF F ++ K KD C NKVSSVLLAIR+ALEE +PESPSRELCI
Sbjct: 778 ETLYKKFSF----SKKGDKVFEVKD----RCSNKVSSVLLAIREALEEHIPESPSRELCI 829
Query: 838 LTTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYE 896
LTTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DS+AV+E
Sbjct: 830 LTTLARSDPPAIEESLLRIKSVRELELLNSSDDIRKKSCPSAEEALKHLLWLLDSDAVFE 889
Query: 897 AALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVS 956
AALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 890 AALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVS 949
Query: 957 MGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016
GD+Y DC+NL+KK QLFPLGL+LITDP K + VLEAWADHL D K FEDAATTY CC
Sbjct: 950 AGDAYFPDCMNLIKKNPQLFPLGLQLITDPEKKQAVLEAWADHLIDEKRFEDAATTYLCC 1009
Query: 1017 SSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076
LEKA KAYR G+WSGVL V L+KLGKDE+ KLA ELCEE+ ALGKP EAAKIAL+Y
Sbjct: 1010 CKLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEY 1069
Query: 1077 CGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGK 1136
C D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGK
Sbjct: 1070 CRDISGGISLLINAREWEEALRVAFLHTTDDRISVVKSSALECASGLVSEFKESIEKVGK 1129
Query: 1137 YLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
YLTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS SGMS YT G
Sbjct: 1130 YLTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLG 1179
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240688|ref|NP_196872.1| elongator complex protein 1 [Arabidopsis thaliana] gi|75171810|sp|Q9FNA4.1|ELP1_ARATH RecName: Full=Elongator complex protein 1; Short=AtELP1; AltName: Full=Elongator component 1; AltName: Full=Protein ABA-OVERLY SENSITIVE 1; AltName: Full=Protein ELONGATA 2 gi|9758034|dbj|BAB08695.1| unnamed protein product [Arabidopsis thaliana] gi|332004544|gb|AED91927.1| elongator complex protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1520 bits (3935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1189 (63%), Positives = 911/1189 (76%), Gaps = 11/1189 (0%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVR 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + TE+VG +EGGV+
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E S IS
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVTPLSLSLMPPPMYLFSL F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL H LL VS +G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ K S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR------VKDSCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ KLA ELCEE+ ALGKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
LTRYLAVRQRRLLL AKL+SE+RS+ DLDDDT SE SS SGMS YT G
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLG 1181
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115472799|ref|NP_001059998.1| Os07g0563700 [Oryza sativa Japonica Group] gi|113611534|dbj|BAF21912.1| Os07g0563700 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1355 bits (3507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/1202 (55%), Positives = 872/1202 (72%), Gaps = 29/1202 (2%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSS-FQNERASI 59
M NLK+ + L+LQ E + SA+D E+ R FF SS N +YS L + Q
Sbjct: 1 MKNLKVVTRIAQKLQLQLDGETVVVSAVDAERRRAFFVSSENFLYSVDLPAPTQQSLQWS 60
Query: 60 KTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGV 119
++ + ++ E + LEPGD I A DYLMEKE+L++G+S+G LLL++VD TEVVGR+EGGV
Sbjct: 61 ESTLDSDAEEVVLEPGDYIVAMDYLMEKESLLLGSSTGCLLLYNVDEKTTEVVGRLEGGV 120
Query: 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAE-GFDVHEPELSSSFSFKSP 178
+ I+ SPDG L+ VTTGFGQ+L+MT+DW++L+E L+ + D++ P + +S
Sbjct: 121 KTIASSPDGALISVTTGFGQLLIMTNDWEVLFETSLDPHCDLTGDINSP----NGHIQSS 176
Query: 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA 238
ISWRGDGK+FATL SS+ +L +WER+SG + +SS+ KAF+GA L+WMPSGA +A
Sbjct: 177 ISWRGDGKFFATLGGLEGSSQ---KLTIWERESGNIHSSSDTKAFIGASLDWMPSGAKVA 233
Query: 239 AVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298
+DRK+E KCP IVFYE+NGLERS F I+E ++ ++ LKWNC S+LLAA+V +YD
Sbjct: 234 TAHDRKTEGKCPLIVFYEKNGLERSHFSIDEPAEAVIQALKWNCNSELLAALVSCGQYDV 293
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+K+ SNNHWYLK E+RY +++G+RF W TKP+ LICWTL GQ+ T+ F WTTAV E
Sbjct: 294 IKVWSCSNNHWYLKQELRYTKKEGVRFYWDQTKPMHLICWTLGGQVITHRFAWTTAVSET 353
Query: 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
S ALVIDGS +LVTPLSL LMPPPM LF L FP AV E++F S +SKN +AA LS+G LC
Sbjct: 354 SIALVIDGSHVLVTPLSLGLMPPPMSLFHLTFPCAVNEVSFLSYNSKNHIAAYLSNGSLC 413
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY---- 474
V LP D E+ EG+ V+ C SE+ + +HL W+ + L+ + S+
Sbjct: 414 VSVLPVADTWEEFEGSGISVDPCFSESTLNNYMHLTWIDTCTLIGICCRADAFSSTPMRS 473
Query: 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAK 534
++L E ++ EIEL CSED + G +GW AK+S ++PL+ VI I+ N AK
Sbjct: 474 SEASSLLEKNDSPYFINEIELVCSEDSLLGSACSSGWQAKISKKMPLQAAVIGISQNPAK 533
Query: 535 KYSAFLQFHGGKISEYMSRVGL------TGGALTHDDASFPSSCPWMNVVSVGTNGPLKP 588
+ SAF+Q GG++ EY S+V L + T D +FP+SCPWM V NG ++
Sbjct: 534 EGSAFIQLSGGRVVEYCSKVNLFRMSAPVQVSETGSDHTFPTSCPWMTAVQCHENGMVRT 593
Query: 589 LLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAG---QAMSHLILATKQNLLFIVDISDIL 645
LLFGLDD +LHV +++ +NCSSF+FYS + G Q ++HL++ TKQ+LLFIVDIS+IL
Sbjct: 594 LLFGLDDSSKLHVGKRLLSSNCSSFTFYSSAYGAKEQVVTHLLVTTKQDLLFIVDISEIL 653
Query: 646 --HGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECM 703
+GE+ +H ++ +E +I +WE+GAK+IGVLHGDEAAVI+QT RGNLEC+
Sbjct: 654 LKNGEVTTDSHIRSHPRGKQSKE---HITVWEKGAKLIGVLHGDEAAVIMQTTRGNLECI 710
Query: 704 YPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLS 763
YPRKLVL SIV AL+QGRFRDA MVRRHRI+FN++VD+CGW++F++SA++FV+QVNNLS
Sbjct: 711 YPRKLVLVSIVQALVQGRFRDAFDMVRRHRIDFNMVVDYCGWKSFMKSAADFVKQVNNLS 770
Query: 764 YITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL 823
+ITEFVC+I NEN++ LY+ + C D S+ NKV+SVL+AIRKAL
Sbjct: 771 HITEFVCSIKNENVSSKLYETYISFPDHCATSVADTVNTHGLLSD-NKVTSVLMAIRKAL 829
Query: 824 EEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALK 883
E +V ES SRELCILTTLARS+PP LEEAL RIK+IRE ELLG D+ RR YPSAEE+LK
Sbjct: 830 EVQVEESSSRELCILTTLARSEPPLLEEALNRIKVIRELELLGVDDARRKLYPSAEESLK 889
Query: 884 HLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLR 943
HLLWL + EAV+ AALGLYDLNL+AIVALNSQ+DPKEFLP+L+ LE +PP +M+YT+DLR
Sbjct: 890 HLLWLTEPEAVFNAALGLYDLNLSAIVALNSQKDPKEFLPFLKSLECLPPAIMKYTVDLR 949
Query: 944 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003
L R+E+ALK+IVS GD YH DC+ L+ QLFPLGL+L TDP K Q+LEAW D LS+
Sbjct: 950 LGRYESALKNIVSAGDEYHEDCMKLLNANPQLFPLGLQLFTDPDKRHQILEAWGDQLSEE 1009
Query: 1004 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL 1063
KCF DAA TY CCSS +K++KAYR G+W GV TVAGLLK K+E+ +LA +LC+E QAL
Sbjct: 1010 KCFADAAITYQCCSSYQKSLKAYRDCGDWRGVFTVAGLLKFKKEEILQLAHDLCDEFQAL 1069
Query: 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSL 1123
GKPG+AAKIAL+YC DV G+ I AR+WEEALRVA+MH R+DL+ V+ A+LEC++ L
Sbjct: 1070 GKPGDAAKIALEYCSDVDRGVGYFITAREWEEALRVAYMHSRQDLVDTVRDAALECSALL 1129
Query: 1124 IGEYKEGLEKVGKYLTRYLAVRQRRLLLVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVY 1183
I EY+EGL KVGKYL RY+AVRQRRL L AKLQSEDR M D++DD++SE S++FS MS Y
Sbjct: 1130 ISEYQEGLLKVGKYLARYVAVRQRRLSLAAKLQSEDRFM-DVEDDSISEVSTSFSEMSAY 1188
Query: 1184 TT 1185
TT
Sbjct: 1189 TT 1190
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1196 | ||||||
| TAIR|locus:2173199 | 1319 | ABO1 "ABA-OVERLY SENSITIVE 1" | 0.984 | 0.893 | 0.593 | 0.0 | |
| UNIPROTKB|O95163 | 1332 | IKBKAP "Elongator complex prot | 0.300 | 0.269 | 0.324 | 1.4e-83 | |
| UNIPROTKB|F1SP27 | 1342 | IKBKAP "Uncharacterized protei | 0.297 | 0.265 | 0.323 | 1.6e-83 | |
| UNIPROTKB|E1BBQ3 | 1191 | LOC505465 "Uncharacterized pro | 0.302 | 0.303 | 0.312 | 1.2e-81 | |
| MGI|MGI:1914544 | 1333 | Ikbkap "inhibitor of kappa lig | 0.298 | 0.267 | 0.329 | 9.5e-79 | |
| UNIPROTKB|Q8WND5 | 1333 | IKBKAP "Elongator complex prot | 0.299 | 0.268 | 0.311 | 1.1e-76 | |
| RGD|620072 | 1331 | Ikbkap "inhibitor of kappa lig | 0.248 | 0.223 | 0.362 | 2.1e-75 | |
| DICTYBASE|DDB_G0284075 | 1390 | elp1 "elongation protein 1" [D | 0.505 | 0.435 | 0.278 | 1.5e-73 | |
| SGD|S000004376 | 1349 | IKI3 "Subunit of Elongator com | 0.416 | 0.369 | 0.278 | 1.2e-61 | |
| UNIPROTKB|F5H2T0 | 983 | IKBKAP "Elongator complex prot | 0.300 | 0.365 | 0.324 | 1.8e-60 |
| TAIR|locus:2173199 ABO1 "ABA-OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3518 (1243.5 bits), Expect = 0., P = 0.
Identities = 706/1189 (59%), Positives = 853/1189 (71%)
Query: 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIK 60
M NLKL +EVP N++L S +E++QF+A DI+Q+RLFFASSAN +Y+ QLSSFQNE A K
Sbjct: 1 MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60
Query: 61 TAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATXXXXXXXXXXX 120
+A+ E+ ID+EPGD ITAFDYL EKE+L++GTS GLLL+H+V+ + T
Sbjct: 61 SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120
Query: 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELXXXXXXXXXXX 180
ISP+P GDLLG+ TG GQ+LVMT+DW L+YE L E+ EG V E
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEGGYVRETNDLSVNCGGISIS 180
Query: 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240
WRGDGKYFAT+ E S + K++K+WE DSG LQ+SSE K F +LEWMPSGA IAAV
Sbjct: 181 WRGDGKYFATMGEVYESGCMSKKIKIWESDSGALQSSSETKEFTQGILEWMPSGAKIAAV 240
Query: 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDST--VELLKWNCMSDLLAAVVRFEEYDS 298
Y RKS++ PSI F+ERNGLERSSF I E D+T E LKWN SDLLA VV + YD+
Sbjct: 241 YKRKSDDSSPSIAFFERNGLERSSFRIGEPEDATESCENLKWNSASDLLAGVVSCKTYDA 300
Query: 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358
+++ FFSNNHWYLK EIRY R G+ MW PTKPLQLICWTL GQ++ +F+W TAVME+
Sbjct: 301 IRVWFFSNNHWYLKQEIRYPREAGVTVMWDPTKPLQLICWTLSGQVSVRHFMWVTAVMED 360
Query: 359 STALVIDGSKILVTXXXXXXXXXXXXXXXXKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418
STA VID SKILVT F +AV ++A+YS++SKNCLA LSDG L
Sbjct: 361 STAFVIDNSKILVTPLSLSLMPPPMYLFSLSFSSAVRDIAYYSRNSKNCLAVFLSDGNLS 420
Query: 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGXXXXXXXXXXGPRHSNYFRGA 478
V+ PAP+ EDLEG +F VE +TA GS +HL+WL G H+
Sbjct: 421 FVEFPAPNTWEDLEGKDFSVEISDCKTALGSFVHLLWLDVHSLLCVSAYGSSHNKCLSSG 480
Query: 479 TLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSA 538
+ + L G Y QE+E+ C EDHV +TC+G+ A ++ Q LE V+A+A N +K+ SA
Sbjct: 481 GYDTE-LHGSYLQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWNPSKRDSA 539
Query: 539 FLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGR 598
F++F GGK+ Y SR + + D FPS+CPW+ V V +G KPL+ GLDD GR
Sbjct: 540 FVEFEGGKVLGYASRSEIMETRSSDDSVCFPSTCPWVRVAQVDASGVHKPLICGLDDMGR 599
Query: 599 LHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTH 658
L ++GK +CNNCSSFSFYS+ A + ++HLI+ TKQ+ LFIVD D+L+G++AL F
Sbjct: 600 LSINGKNLCNNCSSFSFYSELANEVVTHLIILTKQDFLFIVDTKDVLNGDVALGNVFFVI 659
Query: 659 VGNRRKEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALI 718
G RR EEN+SY+NIWERGAKVIGVL+GDEAAVILQT RGNLEC+YPRKLVL+SI NAL
Sbjct: 660 DGRRRDEENMSYVNIWERGAKVIGVLNGDEAAVILQTMRGNLECIYPRKLVLSSITNALA 719
Query: 719 QGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778
Q RF+DA +VRRHRI+FNVIVD GWQAFLQSA FV QVNNL+++TEFVCA+ NE++T
Sbjct: 720 QQRFKDAFNLVRRHRIDFNVIVDLYGWQAFLQSAVAFVEQVNNLNHVTEFVCAMKNEDVT 779
Query: 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCIL 838
ETLYKKF F S E F+ KD S NKVSSVL AIRKALEE +PESPSRELCIL
Sbjct: 780 ETLYKKFSF-SKKGDEVFR---VKD---SCSNKVSSVLQAIRKALEEHIPESPSRELCIL 832
Query: 839 TTLARSDPPALEEALERIKIIRETELLGS-DEPRRMSYPSAEEALKHLLWLADSEAVYEA 897
TTLARSDPPA+EE+L RIK +RE ELL S D+ R+ S PSAEEALKHLLWL DSEAV+EA
Sbjct: 833 TTLARSDPPAIEESLLRIKSVREMELLNSSDDIRKKSCPSAEEALKHLLWLLDSEAVFEA 892
Query: 898 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSM 957
ALGLYDLNLAAIVALNSQRDPKEFLPYLQELE MP LM + ID++LQRF++AL++IVS
Sbjct: 893 ALGLYDLNLAAIVALNSQRDPKEFLPYLQELEKMPESLMHFKIDIKLQRFDSALRNIVSA 952
Query: 958 GDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017
G Y DC+NL+KK QLFPLGL LITDP K VLEAWADHL D K FEDAATTY CC
Sbjct: 953 GVGYFPDCMNLIKKNPQLFPLGLLLITDPEKKLVVLEAWADHLIDEKRFEDAATTYLCCC 1012
Query: 1018 SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYC 1077
LEKA KAYR G+WSGVL V L+KLGKDE+ K GKP EAAKIAL+YC
Sbjct: 1013 KLEKASKAYRECGDWSGVLRVGALMKLGKDEILKLAYELCEEVNALGKPAEAAKIALEYC 1072
Query: 1078 GDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137
D++ GISLLI+AR+WEEALRVAF+H +D I+ VK ++LECAS L+ E+KE +EKVGKY
Sbjct: 1073 SDISGGISLLINAREWEEALRVAFLHTADDRISVVKSSALECASGLVSEFKESIEKVGKY 1132
Query: 1138 LTRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVYTTG 1186
LTRY SE+RS+ DLDDDT SE SS SGMS YT G
Sbjct: 1133 LTRYLAVRQRRLLLAAKLKSEERSVVDLDDDTASEASSNLSGMSAYTLG 1181
|
|
| UNIPROTKB|O95163 IKBKAP "Elongator complex protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.4e-83, Sum P(4) = 1.4e-83
Identities = 121/373 (32%), Positives = 179/373 (47%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NK+ V A+R +E P L ILT+ + P LE L+++ EL G+
Sbjct: 814 NKIDLVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQGN-A 865
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 866 PSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLK 925
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL + ++
Sbjct: 926 KMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQ 984
Query: 990 EQVLE-AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
Q + A+ +HL +E A + C + EKA+ A+ GNW L VA L KD+
Sbjct: 985 YQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQ 1044
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCG-DVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K +AA + L+ C D + LL++ WEEALR+ + + R D
Sbjct: 1045 LVGLGRTLAGKLVEQRKHIDAAMV-LEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLD 1103
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R +D + +
Sbjct: 1104 IIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGL-DDEVPHGQE 1162
Query: 1167 DDTVSETSSTFSG 1179
D SETSS SG
Sbjct: 1163 SDLFSETSSVVSG 1175
|
|
| UNIPROTKB|F1SP27 IKBKAP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 1.6e-83, Sum P(4) = 1.6e-83
Identities = 121/374 (32%), Positives = 180/374 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
KV + A+R A+E P L ILT+ + P LE L+++ ++ L D
Sbjct: 825 KVDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELETVLQKVHELQGNAALVPDAV 882
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
SAEEALK+LL L D +Y+ +LG Y+ +L +VA SQ+DPKE+LP+L L+
Sbjct: 883 ------SAEEALKYLLLLVDVNELYDHSLGTYNFDLVLMVAEKSQKDPKEYLPFLNTLKK 936
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ L+L D +
Sbjct: 937 METNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNKALELYPPDSQQY 995
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
+ + A+ +HL E A + C + EKA+ A+ A GNW L VA L+L KD++
Sbjct: 996 KDISIAYGEHLLQEHLHEPAGLVFARCGAHEKALSAFLACGNWRQALCVAAQLELNKDQL 1055
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109
A K +AA + Y D + LL++ WEEALR+ + R D+I
Sbjct: 1056 ASLGRTLAGKLVEQRKYSDAAAVLEQYAQDYEEAVLLLLEGAAWEEALRLVHKYNRPDII 1115
Query: 1110 -TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXS---EDRSMNDL 1165
T VK + LE + Y L+ +R+ +D + +
Sbjct: 1116 ETNVKPSILEAQKN----YMAFLDSQSSIFSRHKNRLLVVRELKEQAQQVNLDDEAPHGQ 1171
Query: 1166 DDDTVSETSSTFSG 1179
+ D SETSS SG
Sbjct: 1172 ESDLFSETSSVMSG 1185
|
|
| UNIPROTKB|E1BBQ3 LOC505465 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 1.2e-81, Sum P(4) = 1.2e-81
Identities = 117/374 (31%), Positives = 180/374 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
KV + A+R A+E P L ILT+ + P LE AL+++ +L GS P
Sbjct: 815 KVDLICDAMRAAMENINPHKYC--LSILTSHVKKTTPELEIALQKVH-----KLQGSAPP 867
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
+ SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 868 VPDTV-SAEEALKYLLLLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKK 926
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM- 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL ++
Sbjct: 927 MEMNYQRFTIDKHLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYPPNSQQY 985
Query: 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049
+ + A+ +HL E A + C + EKA+ A+ A G+W L A L L +++
Sbjct: 986 KDISIAYGEHLLQEHLHEPAGLVFARCGAHEKALSAFLACGSWQQALCAAAQLHLTAEQL 1045
Query: 1050 AKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109
A K +AA + Y D + +L++ WEEALR+ + R D+I
Sbjct: 1046 AGLGRTLAGKLVEQRKHSDAATVLEQYAQDHEEAVLVLLEGAAWEEALRLVHKYNRPDII 1105
Query: 1110 -TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDDD 1168
T +K + LE + + ++ R +D + + + D
Sbjct: 1106 ETNIKPSILEGEKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQPVSL-DDEAPHGPESD 1164
Query: 1169 TVSETSSTFSGMSV 1182
SETSS SG ++
Sbjct: 1165 LFSETSSVMSGSNL 1178
|
|
| MGI|MGI:1914544 Ikbkap "inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 9.5e-79, Sum P(4) = 9.5e-79
Identities = 123/373 (32%), Positives = 181/373 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSD 868
K+ + A+R A+E P R+ C ILT+ + P LE L++++ EL G+
Sbjct: 816 KLDLICDAMRAAMEAINP----RKFCLSILTSHVKKTTPELEIVLQKVQ-----ELQGN- 865
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
P S EEALK+LL L D ++ +LG YD NL +VA SQ+DPKE+LP+L L
Sbjct: 866 LPFDPESVSVEEALKYLLLLVDVNELFNHSLGTYDFNLVLMVAEKSQKDPKEYLPFLNTL 925
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ M R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D
Sbjct: 926 KKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSP 984
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
+ + V A+ +HL +E A + C + EKA++A+ A G+W L VA L++ KD
Sbjct: 985 QYQAVSMAYGEHLMQEHLYEPAGLVFARCGAQEKALEAFLACGSWQQALCVAAQLQMSKD 1044
Query: 1048 EVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+VA K EAA + Y D + LL++ WEEALR+ + + R D
Sbjct: 1045 KVAGLARTLAGKLVEQRKHSEAATVLEQYAQDYEEAVLLLLEGSAWEEALRLVYKYDRVD 1104
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R + + +
Sbjct: 1105 IIETSVKPSILEAQKNYMDFLDSETATFIRHKNRLQVVRALRRQAPQVHVDHEVAHGP-E 1163
Query: 1167 DDTVSETSSTFSG 1179
D SETSS SG
Sbjct: 1164 SDLFSETSSIMSG 1176
|
|
| UNIPROTKB|Q8WND5 IKBKAP "Elongator complex protein 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 1.1e-76, Sum P(4) = 1.1e-76
Identities = 116/372 (31%), Positives = 180/372 (48%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEP 870
K+ + A+R A+E P L ILT+ + P LE L+++ EL G+ P
Sbjct: 816 KLDLICDALRVAMENINPHKYC--LPILTSHVKKTTPELEIVLQKVH-----ELQGN-AP 867
Query: 871 RRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELES 930
SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 868 SDPDAVSAEEALKYLLLLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLKK 927
Query: 931 MPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKME 990
M R+TID L+R+E A+ H+ G Y ++CLNL+K L+ LKL P E
Sbjct: 928 METNYQRFTIDKYLKRYEKAIGHLSKCGPEYFSECLNLIKD-KNLYNEALKLYP-PTSQE 985
Query: 991 --QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
+ A+ +HL + +E A + C + EKA+ A+ G+W L +A L + +++
Sbjct: 986 YKDISIAYGEHLMEEHQYEPAGLVFARCGAHEKALSAFLTCGSWQQTLCMAAQLNMTEEQ 1045
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108
+A K +AA + Y D + LL++ WEEALR+ + + R D+
Sbjct: 1046 LAGLGRTLAGKLAEQRKHSDAAIVLEQYTQDYEEAVLLLLEGAAWEEALRLVYKYNRLDI 1105
Query: 1109 I-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLDD 1167
I T +K + LE + + + ++ R +D + +
Sbjct: 1106 IETNIKPSILEAYKNYMAFLESQSATFSRHKERLLEVRELKERAQQVDL-DDEMPHGQEA 1164
Query: 1168 DTVSETSSTFSG 1179
D SETSS SG
Sbjct: 1165 DLFSETSSIVSG 1176
|
|
| RGD|620072 Ikbkap "inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 2.1e-75, Sum P(4) = 2.1e-75
Identities = 113/312 (36%), Positives = 164/312 (52%)
Query: 811 KVSSVLLAIRKALEEKVPESPSRELC--ILTTLARSDPPALEEALERIKIIRETELLGSD 868
KV + A+R A+E P R+ C ILT+ + P L+ L+++ EL G
Sbjct: 814 KVDLICDAMRVAMETINP----RKFCLSILTSHVKKTTPELDIVLQKVH-----ELQGKI 864
Query: 869 EPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQEL 928
P SAEEALK+LL L D ++ +LG YD +L +VA SQ+DPKE+LP+L L
Sbjct: 865 -PFVPESVSAEEALKYLLLLVDVNELFNHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTL 923
Query: 929 ESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLIT-DPA 987
+ M R+TID L+R+E AL H+ G Y +CLNL+K L+ LKL D
Sbjct: 924 KKMETNYQRFTIDKYLKRYEKALGHLSKCGPEYFTECLNLIKD-KNLYKEALKLYRPDSP 982
Query: 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047
+ + V A+ +HL +E A + C + EKA++A+ A G+W L +A L++ KD
Sbjct: 983 QYQAVSVAYGEHLVQELLYEPAGLVFARCGAHEKALEAFLACGSWQQALCMAAQLQMAKD 1042
Query: 1048 EVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107
+VA K EAA + Y D + LL++ WEEALR+ + + R D
Sbjct: 1043 KVAGLARTLAGKLVEQRKHSEAATVLEQYALDYEEAVLLLLEGSAWEEALRLVYKYDRVD 1102
Query: 1108 LI-TKVKHASLE 1118
+I T VK + LE
Sbjct: 1103 IIETSVKPSILE 1114
|
|
| DICTYBASE|DDB_G0284075 elp1 "elongation protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.5e-73, Sum P(2) = 1.5e-73
Identities = 182/653 (27%), Positives = 319/653 (48%)
Query: 568 FPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSA-GQAMSH 626
FP+ CPW + ++ + GL+D +L+++ ++C +C+SF+ ++K +SH
Sbjct: 587 FPTPCPWFSSCTINQEDSV----VGLNDRNKLYINQSLLCTDCNSFALHNKFLLFTTVSH 642
Query: 627 LILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISY---INIWERGAKVIGV 683
++ + +LL + + ++ N+ ++ ++ +Y I ERG++++ V
Sbjct: 643 VLRSV--SLLAPPPTQPLTYVPVSNVIGNYVGHKSQALQQQSNYDDSIRDVERGSRIVAV 700
Query: 684 LHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHC 743
+ D ++LQ RGNLE + PR L L +I + ++ A + +RR+RI+ N I DH
Sbjct: 701 VPHD-TRLVLQMPRGNLEAISPRSLTLATIREMINNHQYLSAFLTMRRNRIDMNFIYDHN 759
Query: 744 GWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKD 803
F++ EFV Q+ + Y+ F+ ++ +E+ T+TL F+ L + P
Sbjct: 760 PTD-FIRHIEEFVDQIQQIDYLNLFISSLRDEDTTKTL-----FIDLETKHLLP--PTNV 811
Query: 804 FKASEC--NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRE 861
K S KV+ V ++RK EK +S L ILTT + PP L++ L I+ +R
Sbjct: 812 VKPSSIVVGKVNLVCDSLRKVFMEK--DSIKFNLPILTTYVKKSPPELDQVLRLIQSLRG 869
Query: 862 TELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF 921
E+ +++ + AEE+L ++++L D +Y+ ALG YD L +VA SQ+DPKE+
Sbjct: 870 EEI--NEQGETIVNRLAEESLDYIVFLVDVNKLYDIALGTYDFELVIMVAQKSQKDPKEY 927
Query: 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM---KKYAQ-LFP 977
+P+LQEL+ M RY+ID L R+E AL ++ G Y DCL+L+ K Y + L
Sbjct: 928 IPFLQELQKMEKFYQRYSIDKYLSRWELALYNLSRAGKKYQQDCLDLIISNKIYKEALVN 987
Query: 978 LGLK-------LITDPAKM-EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 1029
G LI + +M ++VL + D+L + FEDAA + + +K++ A+R +
Sbjct: 988 YGGSAADSDDNLIEEKDEMFKKVLNIYGDYLLESNQFEDAAYLFLQANQEKKSINAFRDA 1047
Query: 1030 GNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGDVTNGISLLID 1089
G W ++ A L K+++ + K +AA+ L+ + I + +
Sbjct: 1048 GLWENAISQANKLSYTKEQLNQLVIELSEILKRNSKFQQAAQ-CLEKFQLIDQAIHMYCE 1106
Query: 1090 ARDWEEALRVAFM----HRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXX 1145
+ EAL ++ ++ E+ K+K + L+ S+ I E EK K TR
Sbjct: 1107 GYYFNEALLLSSSSSSSNQEEEQQIKIKKSLLDSLSNQINEINNNFEKYEKMSTRIVIVR 1166
Query: 1146 XXXXXXXXXXXSEDRSMNDLDDDTV-SETSSTFS--GMSVYTTGYVNYTSISF 1195
R D + ++ S S FS GMSV + N T+ S+
Sbjct: 1167 TNKLNYVPLLLP--RGQGDFETGSMMSGMSGMFSEGGMSV-NSALSNVTTSSY 1216
|
|
| SGD|S000004376 IKI3 "Subunit of Elongator complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 150/538 (27%), Positives = 260/538 (48%)
Query: 675 ERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRI 734
ERG+ ++ V+ +++V+LQ RGNLE +YPR +VL + ++ R+++A ++ R HRI
Sbjct: 712 ERGSILVSVIPS-KSSVVLQATRGNLETIYPRIMVLAEVRKNIMAKRYKEAFIVCRTHRI 770
Query: 735 NFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT-----ETLY----KKF 785
N +++ D+ + F+++ F+ Q+ + Y+ F+ ++ +++T ETLY K F
Sbjct: 771 NLDILHDYAP-ELFIENLEVFINQIGRVDYLNLFISCLSEDDVTKTKYKETLYSGISKSF 829
Query: 786 QFLSLPCREEFKDLPAKDF--KASECNKVSSVLLAIRKALEEKVPESPSREL-CILTTLA 842
P E + K F K S+ NK+ +L + L PE + L I+T A
Sbjct: 830 GMEPAPLTEMQIYMKKKMFDPKTSKVNKICDAVLNV--LLSN--PEYKKKYLQTIITAYA 885
Query: 843 RSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902
+P L AL K+I E E S+E + + +L +L D VY++AL LY
Sbjct: 886 SQNPQNLSAAL---KLISELE--NSEEK--------DSCVTYLCFLQDVNVVYKSALSLY 932
Query: 903 DLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHI--VSMGDS 960
D++LA +VA SQ DP+E+LP+LQEL+ PL ++ ID L +E AL+H+ + +
Sbjct: 933 DVSLALLVAQKSQMDPREYLPFLQELQDNEPLRRKFLIDDYLGNYEKALEHLSEIDKDGN 992
Query: 961 YHADCLNLMKKYAQLFPLGLKLIT-DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL 1019
+ ++ ++ + L+ GL L D K + +A HLS + + DAA Y L
Sbjct: 993 VSEEVIDYVESH-DLYKHGLALYRYDSEKQNVIYNIYAKHLSSNQMYTDAAVAYEMLGKL 1051
Query: 1020 EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKXXXXXXXXXXXXGKPGEAAKIALDYCGD 1079
++AM AY+++ W +++A ++ +EV + +AA I L+Y +
Sbjct: 1052 KEAMGAYQSAKRWREAMSIA--VQKFPEEVESVAEELISSLTFEHRYVDAADIQLEYLDN 1109
Query: 1080 VTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLE-KVGKYL 1138
V ++L A ++ A VA ++++L+ +V L +I E + ++ L
Sbjct: 1110 VKEAVALYCKAYRYDIASLVAIKAKKDELLEEVVDPGLGEGFGIIAELLADCKGQINSQL 1169
Query: 1139 TRYXXXXXXXXXXXXXXXSEDRSMNDLDDDTVSETSSTFSGMSVYT--TGYVNYTSIS 1194
R ++ D SETS+ S + YT TG T S
Sbjct: 1170 RRLRELRAKKEENPYAFYGQETEQADDVSVAPSETSTQESFFTRYTGKTGGTAKTGAS 1227
|
|
| UNIPROTKB|F5H2T0 IKBKAP "Elongator complex protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 121/373 (32%), Positives = 179/373 (47%)
Query: 810 NKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDE 869
NK+ V A+R +E P L ILT+ + P LE L+++ EL G+
Sbjct: 465 NKIDLVCDAMRAVMESINPHKYC--LSILTSHVKKTTPELEIVLQKVH-----ELQGN-A 516
Query: 870 PRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELE 929
P SAEEALK+LL L D +Y+ +LG YD +L +VA SQ+DPKE+LP+L L+
Sbjct: 517 PSDPDAVSAEEALKYLLHLVDVNELYDHSLGTYDFDLVLMVAEKSQKDPKEYLPFLNTLK 576
Query: 930 SMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKM 989
M R+TID L+R+E A+ H+ G Y +CLNL+K L+ LKL + ++
Sbjct: 577 KMETNYQRFTIDKYLKRYEKAIGHLSKCGPEYFPECLNLIKD-KNLYNEALKLYSPSSQQ 635
Query: 990 EQVLE-AWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDE 1048
Q + A+ +HL +E A + C + EKA+ A+ GNW L VA L KD+
Sbjct: 636 YQDISIAYGEHLMQEHMYEPAGLMFARCGAHEKALSAFLTCGNWKQALCVAAQLNFTKDQ 695
Query: 1049 VAKXXXXXXXXXXXXGKPGEAAKIALDYCG-DVTNGISLLIDARDWEEALRVAFMHRRED 1107
+ K +AA + L+ C D + LL++ WEEALR+ + + R D
Sbjct: 696 LVGLGRTLAGKLVEQRKHIDAAMV-LEECAQDYEEAVLLLLEGAAWEEALRLVYKYNRLD 754
Query: 1108 LI-TKVKHASLECASSLIGEYKEGLEKVGKYLTRYXXXXXXXXXXXXXXXSEDRSMNDLD 1166
+I T VK + LE + + ++ R +D + +
Sbjct: 755 IIETNVKPSILEAQKNYMAFLDSQTATFSRHKKRLLVVRELKEQAQQAGL-DDEVPHGQE 813
Query: 1167 DDTVSETSSTFSG 1179
D SETSS SG
Sbjct: 814 SDLFSETSSVVSG 826
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FNA4 | ELP1_ARATH | No assigned EC number | 0.6375 | 0.9849 | 0.8931 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00018528001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (1316 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00010464001 | SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (563 aa) | • | • | 0.547 | ||||||
 | GSVIVG00031573001 | SubName- Full=Chromosome chr12 scaffold_57, whole genome shotgun sequence; (462 aa) | • | • | 0.436 | ||||||
 | GSVIVG00011637001 | SubName- Full=Chromosome undetermined scaffold_324, whole genome shotgun sequence; (363 aa) | • | 0.400 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1196 | |||
| pfam04762 | 903 | pfam04762, IKI3, IKI3 family | 0.0 | |
| COG5290 | 1243 | COG5290, COG5290, IkappaB kinase complex, IKAP com | 9e-76 |
| >gnl|CDD|218251 pfam04762, IKI3, IKI3 family | Back alignment and domain information |
|---|
Score = 751 bits (1942), Expect = 0.0
Identities = 310/1001 (30%), Positives = 465/1001 (46%), Gaps = 141/1001 (14%)
Query: 1 MNNLKLCAEVPLNLELQS-KDEILQFSALDIEQNRLFFASSANNI-YSAQLSSFQNERAS 58
M NLKL + + ++ D + SA D + + F +L F+ +
Sbjct: 1 MRNLKLLSHGEFKPQSETGPDLPITASAFDTASDAIIFVLGPTESNVVIELQRFRKDGEV 60
Query: 59 IKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVE 116
A P D + + +L + L + + G +LL + D E+VG ++
Sbjct: 61 SVLASFDAPS----PPDDKVVSLHHLADSNQLCLALAGGDILLVTYDPGTTVVEIVGSID 116
Query: 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE------------------- 157
G+ + SPD +LL +TTG +L+MT D++ + E PL+
Sbjct: 117 VGISAAAWSPDEELLALTTGENTVLLMTRDFEPIAEVPLDPDDLKDSKHVSVGWGKKETQ 176
Query: 158 -------LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210
A D PE + ISWRGDG+YFA S + + ++V+ R+
Sbjct: 177 FHGSGAKAAALRDPTVPEDDGKVT----ISWRGDGEYFAV-SSIEPETGSRRVIRVYSRE 231
Query: 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ 270
G L + SE + L W PSG IA++ +VF+ERNGL F +
Sbjct: 232 -GALDSVSEPVDGLEGALSWRPSGNLIASIQRLP---DRLDVVFFERNGLRHGEFTLRLP 287
Query: 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHP 329
+ V L+WN S++LA V E D V++ N HWYLK E+R+ G F W P
Sbjct: 288 EEEKVISLEWNSDSEVLA--VSLE--DRVQLWTTGNYHWYLKQELRFPESAGVAFFKWDP 343
Query: 330 TKPLQLICWTLDGQITTYNFIWTTAVME------NSTALVIDGSKILVTPLSLSLMPPPM 383
KPL L T GQI +F WT A N T VIDGS +L+TPL L+ +PPPM
Sbjct: 344 EKPLTLHVLTESGQILIVDFAWTVARSPTLSPNDNGTVAVIDGSTLLLTPLRLANVPPPM 403
Query: 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE------DLEGTEFV 437
L+ P+ + ++AF +S C+A + SDG + + +L + +
Sbjct: 404 SARELELPSNINDVAFSKSNS--CVAVLTSDGDISIYELSLKKRKPGSPPKLTSKFSLDK 461
Query: 438 VEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELAC 497
VE SE A GS+ L +L LL + + EI L
Sbjct: 462 VENSDSEVALGSLRQLAFLNDSELLVL-SDSDNIT-------------------EIVLVD 501
Query: 498 SEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLT 557
+D L VS +EG+V+ ++ N+ K +++ GK+ +S
Sbjct: 502 VDDTENPL--------SVSVITEIEGIVLILSSNDYKH--VYIETRDGKVLS-LS----A 546
Query: 558 GGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYS 617
G L + FP C W VV +G + L FGL D G+L+ +G+++ +N +SF
Sbjct: 547 EGEL--SEIGFPQLCRWFRVVQIGNDERL---AFGLTDNGKLYANGRLLASNVTSFLVTD 601
Query: 618 KSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERG 677
SHL+ T Q+LL V ++ + +E ERG
Sbjct: 602 -------SHLLFTTAQHLLKFVHLTSEDLLVPL---------DDPEIDERC---RSIERG 642
Query: 678 AKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFN 737
++++ V+ A+V+LQ RGNLE +YPR LVL I L R+++A + R HRI+ N
Sbjct: 643 SRLVTVVPSK-ASVVLQMPRGNLETIYPRALVLAGIRKLLDAKRYKEAFLTCRTHRIDLN 701
Query: 738 VIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFK 797
++ D+ + FL + FV QVN + Y+ F+ ++ E++T+T+YK S P + K
Sbjct: 702 ILHDY-DPELFLDNVELFVDQVNKVDYLDLFLSSLREEDVTKTMYKDTLKASDPPGQSKK 760
Query: 798 DLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIK 857
KD +KV+ + AI ALE K L ILT +PP LE+AL+ I
Sbjct: 761 SGDPKD------SKVNRICDAILAALE-KPKYKDKYLLNILTAYVCKNPPDLEDALQLIA 813
Query: 858 IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRD 917
+RE AEEALKHL +L D +Y+ ALGLYDL LA +VA SQ+D
Sbjct: 814 ELRE-----------EDSEQAEEALKHLCFLVDVNKLYDVALGLYDLKLALLVAQKSQKD 862
Query: 918 PKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958
PKE+LP+LQEL+ MP L ++TID L+R+E ALKH+ ++G
Sbjct: 863 PKEYLPFLQELQKMPELRRKFTIDDYLKRYEKALKHLSALG 903
|
Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. This region contains WD40 like repeats. Length = 903 |
| >gnl|CDD|227610 COG5290, COG5290, IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 9e-76
Identities = 261/1127 (23%), Positives = 435/1127 (38%), Gaps = 159/1127 (14%)
Query: 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE------------ 157
E+VG+V G+ S S D V T +IL+ +D + E L++
Sbjct: 106 EIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRV 165
Query: 158 --------------LAEGFDVHEPE------LSSSFSFKSPISWRGDGKYFATLSEFCNS 197
A+ D P L + + K I WRGD +Y S
Sbjct: 166 GWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGR----S 221
Query: 198 SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257
+ +R G L ++SE M L W P G+ A + S++F+ER
Sbjct: 222 EERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTS-ESVIFFER 280
Query: 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317
NGL FD+ D L WN +S +LA E + +K+ N HWYLK E +
Sbjct: 281 NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA----EGNLLKLWTTKNYHWYLKVERQI 336
Query: 318 LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW------TTAVMENSTALVIDGSKILV 371
++ WHP + L+ + +I F + +N T+ VIDGS +L
Sbjct: 337 PGISYVK--WHPEEKNTLL-FRDGERILRVFFSEKKTHHGSEYPFDNGTSYVIDGSYMLY 393
Query: 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431
TPLSL +PPPM+ + F T V F S + K AA+L D + + D E +
Sbjct: 394 TPLSLKNLPPPMFSVRVGFDTNV-VDVFPSFAEKK-GAALLRD----RLIMFRWDSEEFI 447
Query: 432 -EGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYA 490
+ TEF+ S F + L H+ L + + Y
Sbjct: 448 NKRTEFLESEFDSIVLFDGFLVL--KSGHVFL----------------LKDTNNESDTYI 489
Query: 491 QEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550
+ + ++ +Y G + Y
Sbjct: 490 ----TRNGDVDERKKRGTVETRRTS--------TLVHQLCQTLLRY----GTCVGVVKHY 533
Query: 551 MSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNC 610
L ++ FP+ +V V + + G+ D G+L V
Sbjct: 534 NFEEKL------YELLKFPNGVIDFSVDPVHST----LVAIGITDIGQLFALQ--VLLKK 581
Query: 611 SSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGN-RRKEENIS 669
S FS ++ T +N+L +H E K G R +E
Sbjct: 582 SVFSHNGTK-----LFVLFTTTENIL------SFVHLESTFKPLITVEEGTVRFFDERKR 630
Query: 670 YINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMV 729
+ ERG+ + +L + V+LQ RGNLE +YPR +VL + + +++DA +
Sbjct: 631 SV---ERGSHKVELL-PSKDFVVLQVTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVC 686
Query: 730 RRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLS 789
R HR+ +++D+ + F+++ FV + + Y++ F A+ +++T+T Y F+S
Sbjct: 687 RTHRVPLGILLDY-DPELFIENLEVFVTECRRVDYLSLFSEALQRDDVTKTDY---SFIS 742
Query: 790 LPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPAL 849
K A+ F+ KV+ R+ LE + S + I L + P
Sbjct: 743 -------KSEQARRFRKVFDLKVNLECKDTREHLESLIYNDESIQTIITAYLIGN-PGNG 794
Query: 850 EEALERIK-IIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAA 908
+ AL RI + R +E S +E +K+L +L D E AL LYD +LA
Sbjct: 795 KAALMRISPLSRCSE-------------SLDEDVKNLCFLRDVNFFNEFALSLYDKSLAL 841
Query: 909 IVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNL 968
++A SQ+DP+E+LP+L E + + L +++ID L +E+AL H+ + + +
Sbjct: 842 LIAQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNED-LNVIREVMKY 900
Query: 969 MKKYAQLFPLGLKLIT-DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027
+ ++ L+ L L D + + +A +L D AA Y +A AY
Sbjct: 901 ICRH-DLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYD 959
Query: 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALG-KPGEAAKIALDYCGDVTNGISL 1086
++ W +++ K E A+ L +L K G+A KI L Y ++ +++
Sbjct: 960 SALMWRECGSISTQEK--GYEFNLCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVAM 1017
Query: 1087 LIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146
++ EA A + R + + A L E+ E + +
Sbjct: 1018 DCKGSEYREAFCEAMVSRLVESEKHYE------AGQLGEEFGGKPELAADEYVQIKSQGD 1071
Query: 1147 RRLLLVAK--LQSEDRSMNDLDDDTVSETSSTFSGMSVYTTGYVNYT 1191
R +L K E R + + T+ + S F S + YT
Sbjct: 1072 RLRVLRDKKCEMPEAREILREELLTLDDVSEAFVKYSTRLSALTEYT 1118
|
Length = 1243 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1196 | |||
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 100.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 100.0 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 100.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 100.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.95 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.92 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.92 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.92 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.92 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.92 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.91 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.91 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.91 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.9 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.9 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.89 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.88 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.88 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 99.86 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.86 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.85 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.85 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.84 | |
| PTZ00421 | 493 | coronin; Provisional | 99.84 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.83 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.83 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.83 | |
| PTZ00420 | 568 | coronin; Provisional | 99.83 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.82 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.82 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.82 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.81 | |
| PTZ00420 | 568 | coronin; Provisional | 99.81 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.81 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.8 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.8 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.79 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.78 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.77 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.77 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.76 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.75 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.75 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.74 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.73 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.73 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.73 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.72 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.72 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.71 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.71 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.71 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.7 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.68 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.68 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.68 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.68 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.68 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.67 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.67 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.67 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.66 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.66 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.65 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.65 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.65 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.64 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.64 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.64 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.63 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.63 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.63 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.63 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.62 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.62 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.61 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.61 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.59 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.58 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.58 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.57 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.57 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.56 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.56 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.56 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.55 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.54 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.53 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.51 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.51 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.51 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.51 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.5 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.5 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.5 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.5 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.49 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.48 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.48 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.48 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.47 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.47 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.46 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.44 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.43 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.43 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.43 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.42 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.42 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.42 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.41 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.41 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.41 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.38 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.36 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.35 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.33 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.33 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.33 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.32 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.32 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.31 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.29 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.29 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.28 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.24 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.24 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.24 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.24 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.22 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.21 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.2 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.19 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.18 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.18 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.17 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.17 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.17 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.16 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.16 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.15 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.14 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.14 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.13 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.09 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.09 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.07 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.07 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.06 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.02 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.02 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.99 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.96 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.95 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.93 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.93 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.93 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.9 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.87 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.83 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.8 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.78 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.69 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.69 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 98.66 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.64 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.61 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.61 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.6 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.6 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.59 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.58 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.57 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.54 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.54 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.51 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.46 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.45 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.45 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.44 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.42 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.39 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.36 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.32 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.27 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.25 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.21 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.19 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.15 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.1 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.08 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.06 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.03 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.96 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.84 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.83 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.76 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.75 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.75 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.73 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.73 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.69 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.66 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.66 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.61 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.61 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.59 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.55 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.48 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.46 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.45 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.4 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.36 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.35 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.34 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.3 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.27 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.27 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.26 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.23 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.15 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.12 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 97.12 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.11 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.11 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.08 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.05 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.03 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.02 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 96.99 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.99 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 96.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 96.95 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 96.92 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.89 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.87 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.87 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 96.84 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.83 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.81 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.79 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.78 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 96.78 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.76 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 96.74 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.69 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.63 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 96.62 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 96.61 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.59 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.54 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.53 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.51 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.42 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.38 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.38 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.37 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.34 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 96.25 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.21 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.15 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.11 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.1 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.09 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 96.09 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.09 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.08 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 96.08 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.07 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.01 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.99 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 95.93 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.87 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 95.85 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.8 | |
| PF12931 | 284 | Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ | 95.72 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 95.63 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.58 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.5 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.43 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.39 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.38 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.38 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.33 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 95.3 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 95.3 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.3 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.27 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 95.24 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 95.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.17 | |
| PRK10115 | 686 | protease 2; Provisional | 95.15 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 94.89 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 94.84 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.77 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 94.73 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 94.72 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 94.56 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 94.54 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 94.48 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 94.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 94.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 94.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.33 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 94.33 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 94.25 | |
| PRK10115 | 686 | protease 2; Provisional | 94.19 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 94.18 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 94.08 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.04 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 93.94 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.55 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 93.51 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 93.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 93.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 93.22 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 93.11 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 93.1 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 93.08 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 92.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 92.89 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.87 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 92.7 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 92.63 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.57 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.57 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 92.56 | |
| KOG2168 | 835 | consensus Cullins [Cell cycle control, cell divisi | 92.41 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 92.14 | |
| PF12931 | 284 | Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_ | 92.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.12 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 91.97 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 91.88 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 91.83 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 91.77 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 91.68 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 91.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 91.61 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 91.49 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.38 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 91.33 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 91.19 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 91.08 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.07 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.06 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.0 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 90.98 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.97 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 90.84 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 90.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 90.54 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 90.33 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 90.31 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 90.29 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 90.26 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 90.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 90.14 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 89.92 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 89.88 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 89.7 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 89.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 89.66 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 89.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 89.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 89.42 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 89.3 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 89.24 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 89.1 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 89.04 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 89.01 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 88.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 88.86 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.83 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 88.72 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.36 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 88.3 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.28 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 88.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 87.93 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 87.67 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 87.52 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 87.21 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 86.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 86.63 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 86.61 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 86.56 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 86.44 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 86.38 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 86.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 85.91 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 85.88 |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-196 Score=1746.47 Aligned_cols=1083 Identities=34% Similarity=0.489 Sum_probs=905.5
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEEeC------CCcEEEEecccccccccceeeccccccccccCCC
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASS------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP 74 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 74 (1196)
||||++.+++.+++.. .++ .+.+|+...+.++++|+ +-.+++.+. ..+ + .. ...++...+
T Consensus 1 MkNL~l~~~~~f~~~~-~~~---~~~~f~l~~~~~~~ass~~~~~~~~~~~ei~~--~~k-v--~~-----~~~s~~~~~ 66 (1265)
T KOG1920|consen 1 MKNLKLRYMKTFEIVA-GPG---NAQAFILSPELVTVASSTINELLGLKIFEIES--VGK-V--RL-----VAESFLPED 66 (1265)
T ss_pred CCceeeeeeeeecccC-CCC---chhheeeccccceeeeceeeecccccceeeec--ccc-c--cc-----eeecccCcC
Confidence 9999999999998433 222 45566666666666655 112444443 222 1 11 123333333
Q ss_pred C-CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 G-DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~-~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
+ +.|++++|+.|+..+|+++++|+|++.|+++..++++|.+++||.+++||||+++||.+|+.+++.+|+++|+|+.+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 4 589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc--Cccccc------cCcccc---------------------CCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 154 PLEELA--EGFDVH------EPELSS---------------------SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 154 ~l~~~~--~~~~Vs------~tqf~~---------------------~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
+++.++ .+++|+ +|||+| .++..++|+||+||+||| |+++.++ ++.|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA-Vs~~~~~-~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA-VSFVESE-TGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE-EEEEecc-CCceeE
Confidence 996666 678886 899992 566778899999999999 8887665 344999
Q ss_pred EEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCc-EEEEEEccC
Q 000992 205 KVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDST-VELLKWNCM 283 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~-V~~laWSpD 283 (1196)
||||+ +|.|.+++++..++.++++|.|+|.+||+.+.+++ ..+|+||||||++||+|.++.+.+.. |..|+||.+
T Consensus 225 rV~dr-Eg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s---d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDR-EGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS---DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEecc-cchhhcccCcccccccceeecCCCCeEeeeeecCC---CCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 99999 69999999999999999999999999999999876 56899999999999999999665444 999999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeec--CCCeeE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV--MENSTA 361 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~--~d~~~v 361 (1196)
|++||+.......+.|++|+++||||||||++.|++... +.|||..+++|+++..+|++..++|.|.++. ++.+.+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~ 378 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFAWTTDRSPNDGSTV 378 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEEEeeeccCCCCceE
Confidence 999999887776668999999999999999999976544 8999999999999998999999999999984 788999
Q ss_pred EEEcCCEEEEeeccccCCCCCceeeeecCCCC-EEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeee
Q 000992 362 LVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA-VTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEA 440 (1196)
Q Consensus 362 ~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~-V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~ 440 (1196)
.||||+.+++|||+.++||||||.+++.++.+ +...+-|. ..++...+|+.....-...+.....+.++.|..-.
T Consensus 379 ~VIDgs~llvT~ls~~vvPPPM~~y~l~~~~~~~~~~~~s~----~~~~l~~sd~~~~~~~~~~~n~~~~~~~~~f~~f~ 454 (1265)
T KOG1920|consen 379 YVIDGSRLLVTPLSLAVVPPPMCSYSLLFDSNIVVMPAESK----SALHLFASDIKSRWDGLDFPNSREFLKLKEFSEFI 454 (1265)
T ss_pred EEEeCCEEEEecchhhcCCCCceeeeecCCccceeeccccc----CchhhhhcccchhhhhccccCchhhcccccccccc
Confidence 99999999999999999999999998887764 33333333 23444445544333333334333334444443111
Q ss_pred -ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeee
Q 000992 441 -CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQI 519 (1196)
Q Consensus 441 -~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (1196)
+....+.+.++.+.|+.+....+.... ++...+..++. +++. .+.++.....+
T Consensus 455 ~~~~t~~~~~~~~~~~~~~~~~~v~~~~--~~~~k~~~~~~----------~~~~--------------~~~~l~~~~v~ 508 (1265)
T KOG1920|consen 455 GSLVTPSGHKFYLLEFSVNEDTDVNANG--SNRSKIGEVGV----------QETT--------------EHHQLCQVEVY 508 (1265)
T ss_pred hhhhcCCcceEEEEEEecccceeeecCC--cchhheeeece----------EEcc--------------cccEEEEEEEE
Confidence 111223346677777665543333222 12222332211 1100 11112111111
Q ss_pred ccCCcEEEEecCCCCCce-EEEEeeCCeEEEEeccc-----cccCCCCCCCCCCCCCCCCceeEEEecCCCCCccEEEEE
Q 000992 520 PLEGLVIAIAPNNAKKYS-AFLQFHGGKISEYMSRV-----GLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGL 593 (1196)
Q Consensus 520 ~~~~~v~~~~~~~~~~~~-~~~~~~dG~v~~~~~~~-----~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL 593 (1196)
.....+.. .+ +... .++++.||+|+.++.++ ... ...+....+.|.+|+|..+..++ + +.+.+||
T Consensus 509 d~~~~v~~-~~---~~~h~~~~~~~dg~Iv~~~~~~i~k~i~~~-~s~ei~~~~sp~~~~d~~~~~v~--~--~~v~~gl 579 (1265)
T KOG1920|consen 509 DHCVGVVS-SY---NFEHGLFLLAGDGVIVSLCDNGIHKGIGIA-PSLEIVELKSPSPCHDGNVAFVD--E--DTVEFGL 579 (1265)
T ss_pred eccccchh-ee---eccccchhhcCCceEEEcccCCcccccccc-ccccEEEecCCccccccceeeec--c--ccccccc
Confidence 11111111 11 2223 77888999999886432 111 12233456789999999999887 3 4578999
Q ss_pred cCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCcccccccccccc
Q 000992 594 DDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINI 673 (1196)
Q Consensus 594 ~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~ 673 (1196)
++.|+||+|.+.|++||+||.++++ |+++||.+|.|+|++|.+..+++++...++ ... ..||++|.
T Consensus 580 ts~~~~~~n~~~l~~~~~sf~~~se-------~~~~~t~~~~l~~~~l~~~~fd~l~~~~~~----~~~---~~~E~vr~ 645 (1265)
T KOG1920|consen 580 TSFGRLFINQILLSSNVSSFFFYSE-------FVLFTTTSHLLQFVCLVDFDFDTLQRVEDD----ESG---RHDERVRN 645 (1265)
T ss_pred cceeEEEEeeEEeecCceEEEEehh-------hhhHHHHHhhhhhheeeeeeecchhhcccc----ccc---ccchhhhh
Confidence 9999999999999999999999999 999999999999999998877776654332 111 27899999
Q ss_pred ccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHH
Q 000992 674 WERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSAS 753 (1196)
Q Consensus 674 vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~ 753 (1196)
|||||+||+++|++ ++||||||||||||||||+|||+.||++|++++|++||.+|||||||||+|+||+ |+.|+.|++
T Consensus 646 vErGsklVa~~~~k-a~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~-~~~Fl~nv~ 723 (1265)
T KOG1920|consen 646 VERGSKLVAVVPQK-AAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYD-PKRFLKNVP 723 (1265)
T ss_pred hhhcceEEEeccch-hhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcC-HHHHHhhHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhcCCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCCCCc
Q 000992 754 EFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSR 833 (1196)
Q Consensus 754 ~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~~~~ 833 (1196)
.||+|+++++||+|||++|++||||+|||+.+ +.+.. +.-.+..+..+|||+||+++|++|++ ..+++|
T Consensus 724 afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~--~~s~k-------~~~~~r~~~d~kv~~vc~~vr~~l~~--~~~~~~ 792 (1265)
T KOG1920|consen 724 AFLKQINRVNHLELFLTELKEEDVTKTMYSST--SGSGK-------QVYMSRDPYDNKVNSVCDAVRNALER--RAPDKF 792 (1265)
T ss_pred HHhccCCcHHHHHHHHhhcccchhhhhhcccc--ccccc-------eeEEeccchhhHHHHHHHHHHHHHhh--cCcchh
Confidence 99999999999999999999999999999988 53221 12233445669999999999999998 457799
Q ss_pred hhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHH
Q 000992 834 ELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALN 913 (1196)
Q Consensus 834 ~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~ 913 (1196)
.|+|||+|||+.||++++||++|+++++.+ ..+.+++||+|||||||+|.||++|||+|||+||++|||+
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~----------~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~ 862 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQLAQ----------VAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQK 862 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhcc----------cchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHH
Confidence 999999999999999999999999998631 3678999999999999999999999999999999999999
Q ss_pred hcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHH
Q 000992 914 SQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQV 992 (1196)
Q Consensus 914 sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i 992 (1196)
|||||||||||||+|++||+++|||+||+|||||++|+.||.++|+.+++++++|+++| +||++||.|| +|+++++.+
T Consensus 863 SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh-~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 863 SQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKH-GLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred hccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhc-ccchhhhheeccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999 9999999999 999999999
Q ss_pred HHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 993 LEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 993 ~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
+++||+||++.+.|++|+.+|+++|+.+||++||.++|+|++|+.+|.++..+++++..+|++|+..|.++++|.|||++
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 000992 1073 ALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQRR-LL 1150 (1196)
Q Consensus 1073 ~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~~k-~~ 1150 (1196)
.++||+|+++||.+||+|+.|++|+|+|.++++.|++++ ++|+|.|++++.+++|++++++|.+|++||++||++| ++
T Consensus 1022 l~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~ 1101 (1265)
T KOG1920|consen 1022 LLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKR 1101 (1265)
T ss_pred HHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999 88
Q ss_pred HhhhcccccCCCCCCCCCccccccccccccccccc
Q 000992 1151 LVAKLQSEDRSMNDLDDDTVSETSSTFSGMSVYTT 1185 (1196)
Q Consensus 1151 ~~~~~~~~~~~~~~~~~D~~S~~ss~~s~~s~yt~ 1185 (1196)
|.+ |+++|+ ..+.++|++|++||..+| |.||+
T Consensus 1102 ~~~-~~~~ev-~~d~d~dlas~ssS~~~~-s~ysG 1133 (1265)
T KOG1920|consen 1102 PEA-FADGEV-EHDLDDDLASESSSTNSG-SQYSG 1133 (1265)
T ss_pred hhh-hhcccc-Cccccccccccccccccc-ccccC
Confidence 888 999987 337788999999888776 55554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-182 Score=1717.57 Aligned_cols=871 Identities=35% Similarity=0.573 Sum_probs=740.9
Q ss_pred CccceecccccccccccCccc-ceeEEeeecCCCEEEEEeCCCcE---EEEecccccccccce-eeccccccccccCCCC
Q 000992 1 MNNLKLCAEVPLNLELQSKDE-ILQFSALDIEQNRLFFASSANNI---YSAQLSSFQNERASI-KTAISAEIEHIDLEPG 75 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i---~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 75 (1196)
||||++++++.+.++...+++ .+.+.+||+++|.+|++.+.+.+ ++++. ..+..+.+ +.+++.. .|..++
T Consensus 1 MRNL~~~~~~~~~~~~~~~~~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~--~~~~~~~~~l~s~~~~---~~~~~~ 75 (928)
T PF04762_consen 1 MRNLRLLRRGEFKLESQSGPDLPITATAFDSDSDSIYFVLGPNEIDYVIELDR--FSQDGSVEVLASWDAP---LPDDPN 75 (928)
T ss_pred CCCcEEeeeeeEeccccCCcccccceEEEecCCCeEEEEECCCCcceEEEEEe--eccCCceeEEEecccc---CCcCCC
Confidence 999999999999987765533 78999999999999999775544 56666 55544322 2222111 113346
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEE----ECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLH----SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw----~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+.|++++|++|...||+++++|+|.++ +.++..+|++|.+++||.|++||||+++||++|++++|++|+++|++++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 899999999999999999999999999 8888899999999999999999999999999999999999999999999
Q ss_pred eeeccccc--Cccccc------cCcccc------------------------CCCCeEEEEEccCCceEEEeeccccccC
Q 000992 152 ENPLEELA--EGFDVH------EPELSS------------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 152 ~~~l~~~~--~~~~Vs------~tqf~~------------------------~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
|.++++.+ .+++|| |||||| ++++.++|+|||||+||| |++.+++.+
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA-Vss~~~~~~ 234 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA-VSSVEPETG 234 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE-EEEEEcCCC
Confidence 99999888 778997 999982 456788999999999999 899865522
Q ss_pred CCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc-CCCCcEEEE
Q 000992 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELL 278 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~l 278 (1196)
..|+||||+| +|++++++|+.+|++.+++|+|+|++||++++.++ +.+|+||||||++||+|.++. +.+..|..|
T Consensus 235 ~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~---~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 235 SRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPD---RHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred ceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCC---CcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2799999999 89999999999999999999999999999998654 799999999999999999984 556789999
Q ss_pred EEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeee---
Q 000992 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--- 354 (1196)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~--- 354 (1196)
+||+||++||+...|. ||||+++||||||||++.|+.... ..+.|||+++++|++++.+|++..++|.|.++
T Consensus 311 ~Wn~ds~iLAv~~~~~----vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR----VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred EECCCCCEEEEEecCC----ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecC
Confidence 9999999999999886 999999999999999999977555 56999999999999999889999999999998
Q ss_pred ---cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc
Q 000992 355 ---VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1196)
Q Consensus 355 ---~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~ 431 (1196)
++|.++|+||||+++++|||+.++||||||.++++++++|++|+|++++ ..+|+.++||+|.+|.++........
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~--~~~avl~~d~~l~~~~~~~~~~~~~~ 464 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN--SRFAVLTSDGSLSIYEWDLKNMWSVK 464 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC--CeEEEEECCCCEEEEEecCCCccccc
Confidence 5578999999999999999999999999999999999999999999999 78999999999999998654322100
Q ss_pred c---CCceeee---eecccccCCcEEEEEEecCCeEEEEEecC-CCCceEEEEeeccCCccccchhhhhhhhcccccccc
Q 000992 432 E---GTEFVVE---ACISETAFGSVIHLIWLGSHLLLSVSHHG-PRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQG 504 (1196)
Q Consensus 432 ~---g~~~~~~---~~~~~~~~~~v~~l~~~~d~~lla~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1196)
. ...+... ..........+++++|..++.++++...+ ..+.+.++.+.-
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------ 520 (928)
T PF04762_consen 465 PPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDD------------------------ 520 (928)
T ss_pred CcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEecc------------------------
Confidence 0 0001000 00012234589999999999988877665 335555555421
Q ss_pred cccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCC
Q 000992 505 LLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNG 584 (1196)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~ 584 (1196)
......+......++.+..+...+ ....+++|+.+|+|+.++..... ....+||++|+|++++.++ +
T Consensus 521 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~------~~~~~fp~~c~~~~~~~~~--~ 587 (928)
T PF04762_consen 521 ----SENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGEL------SQIVKFPQPCPWMEVCQIN--G 587 (928)
T ss_pred ----CCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCc------cccccCCCCCcEEEEEEEC--C
Confidence 011223344455677777666555 34469999999999988664421 2237999999999999987 4
Q ss_pred C-CccEEEEEcCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCcc
Q 000992 585 P-LKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRR 663 (1196)
Q Consensus 585 ~-~~~~~~gL~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~ 663 (1196)
. .+.++|||+++|+||+|+++||+|||||++|++ ||||||.+|+|+||||. ....+++++.+. ..
T Consensus 588 ~~~~~~~~GLs~~~~Ly~n~~~la~~~tSF~v~~~-------~Ll~TT~~h~l~fv~L~-~~~~~l~~~~~~----~~-- 653 (928)
T PF04762_consen 588 SEDKRVLFGLSSNGRLYANSRLLASNCTSFAVTDS-------FLLFTTTQHTLKFVHLN-SSVEDLEIPPDS----PE-- 653 (928)
T ss_pred ccceeEEEEECCCCEEEECCEEEecCCceEEEEcC-------EEEEEecCceEEEEECc-CchhhcccccCc----cc--
Confidence 0 024899999999999999999999999999999 99999999999999998 233444443322 11
Q ss_pred ccccccccccccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecc
Q 000992 664 KEENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHC 743 (1196)
Q Consensus 664 ~~~~de~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~ 743 (1196)
...||++|+||||||||+++|++ ++||||||||||||||||+|||+.||++|++++|++||.+|||||||||||||||
T Consensus 654 -~~~de~~R~VERGsriVt~vp~~-~~vVLQmPRGNLEtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~ 731 (928)
T PF04762_consen 654 -NSYDERCRRVERGSRIVTAVPSD-TSVVLQMPRGNLETIYPRALVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHN 731 (928)
T ss_pred -cccccccccCccCCEEEEEeCCC-ceEEEEcCCCchhhhccHhHHHHHHHHHHhhccHHHHHHHHHHhccccceEEECC
Confidence 11589999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHHHHHHhcCCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHH
Q 000992 744 GWQAFLQSASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKAL 823 (1196)
Q Consensus 744 ~p~~F~~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l 823 (1196)
|++||+||+.||+||++++|||||||+|+|||||+|||+++ +.... ... ..........++|||+||+|||++|
T Consensus 732 -p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~--~~~~~--~~~-~~~~~~~~~~~~KVn~ICdair~~l 805 (928)
T PF04762_consen 732 -PEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDT--YPPSS--EAQ-PNSNSSTASSESKVNKICDAIRKAL 805 (928)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccccccccc--ccccc--ccc-cccccCCCccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 72111 000 0111122335799999999999999
Q ss_pred hhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccC
Q 000992 824 EEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD 903 (1196)
Q Consensus 824 ~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD 903 (1196)
++. .++.+|+||||||||||+||+||+||++|++||++ +++.||+||||||||+|+|+||++||||||
T Consensus 806 ~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----------~~~~ae~alkyl~fLvDvn~Ly~~ALG~YD 873 (928)
T PF04762_consen 806 EKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE-----------DPESAEEALKYLCFLVDVNKLYDVALGTYD 873 (928)
T ss_pred ccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------ChHHHHHHHhHheeeccHHHHHHHHhhhcC
Confidence 953 78999999999999999999999999999999976 788999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcC
Q 000992 904 LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG 958 (1196)
Q Consensus 904 ~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g 958 (1196)
|+||+||||||||||||||||||+|++||+++|||+||+|||||++||+||++||
T Consensus 874 l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~rry~ID~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 874 LELALMVAQQSQKDPKEYLPFLQELQKLPPLYRRYKIDDHLKRYEKALRHLSACG 928 (928)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHHhCChhheeeeHhhhhCCHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999997
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-158 Score=1355.06 Aligned_cols=1060 Identities=23% Similarity=0.279 Sum_probs=870.2
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEE----eCCCcEEEEecccccccccceeeccccccccccCCC-C
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFA----SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-G 75 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~----s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 75 (1196)
||||..++...++ ..+ | ..-.++||..+|.||+. |.|.+|..... ++....+ +++.+.+.. .
T Consensus 1 M~Nl~t~~~~~fp-t~s--g-~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~---s~~~d~s------~l~~F~ip~f~ 67 (1243)
T COG5290 1 MENLFTRYMSTFP-TAS--G-DEDELGFDSVGDWIYITCVLGSTDKGIEVAKE---SSIYDES------GLKRFEIPFFP 67 (1243)
T ss_pred CcchHhhhhccCC-CCC--C-ChHHhcccccCceEEEEeecCCCCCCeeeeee---ccccchh------heeEeccCCcc
Confidence 9999999999885 333 4 45678889999999965 44566655544 2221111 133332211 3
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEE--ECCC--CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLH--SVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw--~~~~--~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+.+.++.|+.+-.+++.....|+|+.. |+.. ..++++|.+++||.+++||.|.++++.++++.+|.+|++.||+++
T Consensus 68 dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~is 147 (1243)
T COG5290 68 DKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPIS 147 (1243)
T ss_pred hHhhhhhhhhhhheeeEEecCCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccc
Confidence 789999999999999999999998763 3322 356799999999999999999999999999999999999999999
Q ss_pred eeeccccc---Cccccc------cCcccc-----------------------CCCCeEEEEEccCCceEEEeeccccccC
Q 000992 152 ENPLEELA---EGFDVH------EPELSS-----------------------SFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 152 ~~~l~~~~---~~~~Vs------~tqf~~-----------------------~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
+..+...+ -++||+ +|||+| -++....|+|+||.+|++ ++.... .
T Consensus 148 e~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~-v~r~Ee--~ 224 (1243)
T COG5290 148 EYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNL-VGRSEE--R 224 (1243)
T ss_pred hhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceee-ecchhc--c
Confidence 99998777 567876 999993 235567899999999999 887654 3
Q ss_pred CCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEE
Q 000992 200 LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~la 279 (1196)
.+|.+|||.| +|++.+.+||.+|..+.++|.|+|..+|+.+.|+ ......|+|||+||++||+|.++.+-+..+..++
T Consensus 225 prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~-~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~ 302 (1243)
T COG5290 225 PRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDG-CSTSESVIFFERNGLRHGEFDLRVGCDEKAFLEN 302 (1243)
T ss_pred cccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCC-CCCcceEEEEccCCcccCCccccCCchhhhhhhh
Confidence 5789999999 9999999999999999999999999999998663 2345789999999999999998866666789999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee-----
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----- 354 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~----- 354 (1196)
|+..+++||++..+. |+||+++|||||||+++..++ ...++|||+...+|++.. .+.+....|.....
T Consensus 303 wn~~s~vlav~~~n~----~~lwttkNyhWYLK~e~~ip~--~s~vkwhpe~~nTl~f~d-~~~I~~V~f~~k~~~~~s~ 375 (1243)
T COG5290 303 WNLLSTVLAVAEGNL----LKLWTTKNYHWYLKVERQIPG--ISYVKWHPEEKNTLLFRD-GERILRVFFSEKKTHHGSE 375 (1243)
T ss_pred hhHHHHHHHHhhcce----EEEEEccceEEEEEEeecCCC--cceeeeccccCcEEEEec-CCeEEEEEeehhhhcCCcc
Confidence 999999999998776 999999999999999997642 356899999999887754 46666665554332
Q ss_pred -cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000992 355 -VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 355 -~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g 433 (1196)
|.|.|+..||||+.+++|||..+++|||||.+.++++.+|.+|+.|-.. .+.|++..| .+..+.++..+.+.. -
T Consensus 376 ~p~d~g~~~ViDGs~~l~Tplsl~n~PPPm~~~~~~~d~NV~dv~~s~~~--~~~aa~~~d-rli~f~~~s~e~i~k--~ 450 (1243)
T COG5290 376 YPFDNGTSYVIDGSYMLYTPLSLKNLPPPMFSVRVGFDTNVVDVFPSFAE--KKGAALLRD-RLIMFRWDSEEFINK--R 450 (1243)
T ss_pred cCccCCceEEEcCceEEecchhhhcCCCCeEEEEecCCCceeeeccchhh--hhHhhhccc-eeEEEecCcHHHHHH--h
Confidence 8889999999999999999999999999999999999999999877666 778888666 455666665332211 0
Q ss_pred CceeeeeecccccCC---cEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccc
Q 000992 434 TEFVVEACISETAFG---SVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAG 510 (1196)
Q Consensus 434 ~~~~~~~~~~~~~~~---~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1196)
.+| +....+ .+.++.+..+|..+.+.- . ++-..++.... + | .+ +.
T Consensus 451 ~ef------~~sef~s~v~f~~~l~l~~~~v~ll~d-t-nn~s~~~i~~~-~---------d-------~~-------e~ 498 (1243)
T COG5290 451 TEF------LESEFDSIVLFDGFLVLKSGHVFLLKD-T-NNESDTYITRN-G---------D-------VD-------ER 498 (1243)
T ss_pred ccc------cHHhhhhhccccceEEecCceEEEEec-c-CCCcceEEeec-C---------c-------cc-------ch
Confidence 011 111111 367777887776544332 1 22222222211 1 1 11 00
Q ss_pred cceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCccEE
Q 000992 511 WHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLL 590 (1196)
Q Consensus 511 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~ 590 (1196)
.+... ++....++.. +......+.+++++|+|..|+....+ -..++||++|..+.+.++- . ..+.
T Consensus 499 ~k~~~---ve~~~~~~l~--~~~c~~~l~y~t~~G~v~~yn~e~kl------~e~~kfp~~v~df~v~pVH--~--t~v~ 563 (1243)
T COG5290 499 KKRGT---VETRRTSTLV--HQLCQTLLRYGTCVGVVKHYNFEEKL------YELLKFPNGVIDFSVDPVH--S--TLVA 563 (1243)
T ss_pred hhccc---eeeeeeehhh--HHHHHHHHhhcccceeEEEecchhhh------HHHhhCCCceeEEEeeccc--c--ceee
Confidence 11110 1111111111 11256778899999999999765422 1245899999999998765 2 4578
Q ss_pred EEEcCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccc
Q 000992 591 FGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISY 670 (1196)
Q Consensus 591 ~gL~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~ 670 (1196)
|||++.|+||++..++++.|+||..|+. |++|||++|.|.||||... ++++..-.++.+ .-.||+
T Consensus 564 igit~~g~lfa~qvll~~~V~s~~~T~~-------FvlftTt~n~l~Fvhl~st-~~~l~~Veeg~v-------~~~dEr 628 (1243)
T COG5290 564 IGITDIGQLFALQVLLKKSVFSHNGTKL-------FVLFTTTENILSFVHLEST-FKPLITVEEGTV-------RFFDER 628 (1243)
T ss_pred eecccHHHHHHHHHHHHhhhheeeccee-------EEeecchhhhhheEEeecc-cccceeecccch-------hhhhhh
Confidence 9999999999999999999999999999 9999999999999999865 777665333211 125899
Q ss_pred cccccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHH
Q 000992 671 INIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQ 750 (1196)
Q Consensus 671 ~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~ 750 (1196)
+|.|||||++|.++|+. +.||||||||||||||||+|||+.||++|.+++|++||..||+||||||||+||+ |+.|++
T Consensus 629 ~r~vergs~~v~~lpsk-~~vVlq~tRGnLETiyPrImvLa~Vrk~i~akkYkdAf~vCrthrv~l~Il~Dyd-pelfie 706 (1243)
T COG5290 629 KRSVERGSHKVELLPSK-DFVVLQVTRGNLETIYPRIMVLAFVRKLIAAKKYKDAFDVCRTHRVPLGILLDYD-PELFIE 706 (1243)
T ss_pred HHHhhhcceeeEeeccc-ceEEEecccCcceeecceeeeHHHHHHHHHHhhhhHHHHHHHheeeccceeecCC-hHHHHh
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hHHHHHHhcCCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCC
Q 000992 751 SASEFVRQVNNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPES 830 (1196)
Q Consensus 751 ~~~~Fv~qv~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~ 830 (1196)
|++.||.|+.++|||+||+++|+++|||+|||... .++ . +.....+...+|||.+|+++|+.|++. .+.
T Consensus 707 nlevFv~~~~rvdyl~lF~~~L~~ddvt~~~ys~i--skS-~-------q~~~~~k~fD~kvnl~ck~~rehl~s~-~y~ 775 (1243)
T COG5290 707 NLEVFVTECRRVDYLSLFSEALQRDDVTKTDYSFI--SKS-E-------QARRFRKVFDLKVNLECKDTREHLESL-IYN 775 (1243)
T ss_pred hHHHHHHhhhhhhHHHHHHHhcChhhccccchhhh--hHH-H-------HHHHHHHHhcchhhhccHHHHHHHHhh-hcc
Confidence 99999999999999999999999999999999887 421 0 011112223589999999999999986 789
Q ss_pred CCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHH
Q 000992 831 PSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIV 910 (1196)
Q Consensus 831 ~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~v 910 (1196)
++|+|+|+|||++.+||++++||.+|+.|-. ..+..+++++|||||+|+|-+|+.||++||+.||++|
T Consensus 776 d~~~qtiitayl~~np~n~~aal~~is~l~r------------~se~~d~~v~~lCfl~dvn~~~~~aLsLyd~slalli 843 (1243)
T COG5290 776 DESIQTIITAYLIGNPGNGKAALMRISPLSR------------CSESLDEDVKNLCFLRDVNFFNEFALSLYDKSLALLI 843 (1243)
T ss_pred chhHHHHHHHHHhcCCcchHHHHhhhhhhhh------------ccccchHHHHhHhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999999998842 3456789999999999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHH
Q 000992 911 ALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKM 989 (1196)
Q Consensus 911 Aq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~ 989 (1196)
||+||||||||||||+++|++++.+|+|.||+||++|++||.|+.+.. .-++|.++|+..| ++|+.+|.|| +|.+..
T Consensus 844 aq~sqkdpReylpfl~e~qd~e~lrrkf~Id~yl~~ye~ALghl~E~~-n~~~Ev~~yi~~h-dly~~~l~lyrYd~e~Q 921 (1243)
T COG5290 844 AQLSQKDPREYLPFLVERQDLEALRRKFSIDNYLSIYESALGHLNEDL-NVIREVMKYICRH-DLYDFLLLLYRYDGELQ 921 (1243)
T ss_pred HHHhccCchhhhhHHHHhhhhHHHHhHhchhhhHHHHHHHHHhhHhHH-HHHHHHHHHHHhc-cchHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999874 3479999999999 9999999999 999999
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-HHcCChHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEEL-QALGKPGE 1068 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L-~~~~~~~e 1068 (1196)
+.++..||.||.+.+.+.+|+.+|+..|++.+|+.+|..|++|++|+.|+.+- ...+++..|+.|+..| .+.++|.+
T Consensus 922 k~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~--~~~e~~~~AE~L~S~l~ve~R~~~d 999 (1243)
T COG5290 922 KFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQE--KGYEFNLCAELLPSDLLVEFRKAGD 999 (1243)
T ss_pred hhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhh--cchHHHHHHHhhhhhHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999874 3456788888888854 46666999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1069 AAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQR 1147 (1196)
Q Consensus 1069 Aa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~~ 1147 (1196)
|+.+.+.|+.++.+|+.|+|+|.++++|+++|..-...++.+. +.+.|.|.|+...|++++++.|++.|..||++||.+
T Consensus 1000 a~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~k 1079 (1243)
T COG5290 1000 AEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDK 1079 (1243)
T ss_pred HHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999998877777777 999999999999999999999999999999999999
Q ss_pred H-HhHhhhcccccCCCCCCCCCccccccccccc-cc---ccc
Q 000992 1148 R-LLLVAKLQSEDRSMNDLDDDTVSETSSTFSG-MS---VYT 1184 (1196)
Q Consensus 1148 k-~~~~~~~~~~~~~~~~~~~D~~S~~ss~~s~-~s---~yt 1184 (1196)
| ++|.+ ++.+-. .+...|| +|++++..|. .| .||
T Consensus 1080 k~e~p~a-~~~~~~-e~~t~dD-vs~a~~~~st~~s~~t~yt 1118 (1243)
T COG5290 1080 KCEMPEA-REILRE-ELLTLDD-VSEAFVKYSTRLSALTEYT 1118 (1243)
T ss_pred hhcChHH-HHhhhh-hhcCccc-hhhhhhhhhhHHHHHHHHh
Confidence 9 99999 665321 1333444 5665444333 33 666
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=341.04 Aligned_cols=756 Identities=17% Similarity=0.192 Sum_probs=447.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|.+++|-|||.+|+.|. +..+.+||++.| .+..+.+|.+.|.|++||.||++.|+|+.|+.|++|+..-+.+-..
T Consensus 13 hci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY- 90 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY- 90 (1081)
T ss_pred cchheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee-
Confidence 3799999999999998875 557899999764 5566666899999999999999999999999999997543322211
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.|.+.+.+++|.|=.+.||| .+. ..+-+|+.+....+. -. ....+.+.+|..||
T Consensus 91 ----------------SH~D~IQCMsFNP~~h~Las-CsL-------sdFglWS~~qK~V~K-~k-ss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 91 ----------------SHNDAIQCMSFNPITHQLAS-CSL-------SDFGLWSPEQKSVSK-HK-SSSRIICCSWTNDG 144 (1081)
T ss_pred ----------------ccCCeeeEeecCchHHHhhh-cch-------hhccccChhhhhHHh-hh-hheeEEEeeecCCC
Confidence 36678899999999999995 443 356789883322211 11 23346899999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-----eeEEEEccCCcceEEEEEecCCEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-----LLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-----~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+++|-|-.++ +|.+-+++|...+...-++.....|++|+|+|.+. ++|+..... |+-+++++...-
T Consensus 145 qylalG~~nG------TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q---TLSFy~LsG~~I 215 (1081)
T KOG1538|consen 145 QYLALGMFNG------TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ---TLSFYQLSGKQI 215 (1081)
T ss_pred cEEEEeccCc------eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc---eeEEEEecceee
Confidence 9999998754 68888999887665444444456899999999874 566666555 566655553110
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
-....+.| ++.+++.-|.|... .++..++.+..+. -+| +++..+. +
T Consensus 216 gk~r~L~F---dP~CisYf~NGEy~-LiGGsdk~L~~fT---------------R~G--vrLGTvg-------------~ 261 (1081)
T KOG1538|consen 216 GKDRALNF---DPCCISYFTNGEYI-LLGGSDKQLSLFT---------------RDG--VRLGTVG-------------E 261 (1081)
T ss_pred cccccCCC---CchhheeccCCcEE-EEccCCCceEEEe---------------ecC--eEEeecc-------------c
Confidence 00111222 12445555555542 2332233332211 122 2222111 2
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecc---------cccC-----CcEEEEEE
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS---------ETAF-----GSVIHLIW 455 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~---------~~~~-----~~v~~l~~ 455 (1196)
++.+||.|+..|++ +.+++|..||||.-|++... +.+.+....+..-.++. .+.. +-|..++.
T Consensus 262 ~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~fS-TVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiai 338 (1081)
T KOG1538|consen 262 QDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIFS-TVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAI 338 (1081)
T ss_pred cceeEEEEEEccCC--ceEEEEEccCeeehhhhHHh-HhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHh
Confidence 57899999999999 99999999999999987531 11111111110000000 0000 00111111
Q ss_pred ecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeee--eccCCcEEEEecCCC
Q 000992 456 LGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQ--IPLEGLVIAIAPNNA 533 (1196)
Q Consensus 456 ~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~ 533 (1196)
- ++ -||+-- +..+.++.+.. ++.... ++++.+. ..++-...
T Consensus 339 Y-rn-rLAVQL---peki~iYel~s-e~~~~m------------------------hY~v~ekI~kkf~cSLl------- 381 (1081)
T KOG1538|consen 339 Y-RN-RLAVQL---PEKILIYELYS-EDLSDM------------------------HYRVKEKIIKKFECSLL------- 381 (1081)
T ss_pred h-hh-hheecc---cceEEEEeccc-cccccc------------------------hhHHHHHHHhhccceEE-------
Confidence 1 11 234322 24566665531 100000 1111000 01111111
Q ss_pred CCceEEEEeeCCeEEEEeccccccCCC---CCCCCCCCCCCCCceeEEEecCCCCCccEEEEEcCCCceEeCCEEeecCc
Q 000992 534 KKYSAFLQFHGGKISEYMSRVGLTGGA---LTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLDDGGRLHVSGKIVCNNC 610 (1196)
Q Consensus 534 ~~~~~~~~~~dG~v~~~~~~~~~~~~~---~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~n~~~~~~~~ 610 (1196)
....|.++.-... .++... .....-....+-.++.|.- ++.| -+.+++||.+.+-+-+
T Consensus 382 -------VVc~~HiVlCqek-rLqClDF~Gvk~ReW~M~S~iRYikV~G-GP~g-REgL~vGlknGqV~ki--------- 442 (1081)
T KOG1538|consen 382 -------VVCANHIVLCQEK-RLQCLDFSGVKEREWQMESLIRYIKVIG-GPPG-REGLLVGLKNGQVLKI--------- 442 (1081)
T ss_pred -------EEEcCeEEEEccc-ceeeecccchhhhhhhHHHHHHhhhhhc-CCCC-cceeEEEecCCcEEEE---------
Confidence 1122233222110 000000 0000000111122223320 1111 1347899987654432
Q ss_pred eeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEEecCCccE
Q 000992 611 SSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGVLHGDEAA 690 (1196)
Q Consensus 611 tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~~p~~~~~ 690 (1196)
.+.++ . =+|++|+..-.+|++++..- +.+.+ .| |.|--+|.=+-++ -
T Consensus 443 ---F~dN~-----~-PiLl~~~~tAvrClDINA~R-~kLAv---------------VD------D~~~c~v~DI~t~--e 489 (1081)
T KOG1538|consen 443 ---FVDNL-----F-PILLLKQATAVRCLDINASR-KKLAV---------------VD------DNDTCLVYDIDTK--E 489 (1081)
T ss_pred ---EecCC-----c-hhheecccceeEEeeccCCc-ceEEE---------------Ec------cCCeEEEEEccCC--c
Confidence 33333 1 24566777789999986421 11111 11 1222234434343 4
Q ss_pred EEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHHHHHHhcCCcchHHHHHh
Q 000992 691 VILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVC 770 (1196)
Q Consensus 691 vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv~~~~~l~lFls 770 (1196)
+.+|-|--|==+.+-.- .. .+|=+|.=.||+=.--- |..- .+..-||=.
T Consensus 490 lL~QEpg~nSV~wNT~~------E~-----------MlcfT~~g~L~VR~~~~-P~h~-qk~~G~VvG------------ 538 (1081)
T KOG1538|consen 490 LLFQEPGANSVAWNTQC------ED-----------MLCFTGGGYLNVRASTF-PVHR-QKLQGFVVG------------ 538 (1081)
T ss_pred eEeecCCCceEEeeccc------cc-----------eEEEecCCceEEEeccC-Ccch-hcceEEEEE------------
Confidence 55565554433222110 00 01222222222222222 2110 000000000
Q ss_pred hccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHH--HHHhhcCCCCCCchhhhhhhhhhcCCcc
Q 000992 771 AINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIR--KALEEKVPESPSRELCILTTLARSDPPA 848 (1196)
Q Consensus 771 ~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~--~~l~~~~~~~~~~~~~ilT~~~~~~pp~ 848 (1196)
..++|+ .|-... ..++= .......|+ +-. -.
T Consensus 539 ------------------------------------~~gsk~--FCL~~~~i~~~ev--p~~~~m~q~-----Iea--g~ 571 (1081)
T KOG1538|consen 539 ------------------------------------YNGSKI--FCLHVFSISAVEV--PQSAPMYQY-----IER--GL 571 (1081)
T ss_pred ------------------------------------ecCceE--EEEEeeeeecccc--cccccchhh-----hhc--cc
Confidence 000110 011100 00110 111111111 000 01
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCcch--hhHHHH
Q 000992 849 LEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKE--FLPYLQ 926 (1196)
Q Consensus 849 le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~Dpke--YlpfL~ 926 (1196)
+.+|++. .-+ =....|+..|.+.||..+||+.| ++|.+.-|+ ||.++-
T Consensus 572 f~ea~~i-acl-------------------------gVv~~DW~~LA~~ALeAL~f~~A----RkAY~rVRdl~~L~li~ 621 (1081)
T KOG1538|consen 572 FKEAYQI-ACL-------------------------GVTDTDWRELAMEALEALDFETA----RKAYIRVRDLRYLELIS 621 (1081)
T ss_pred hhhhhcc-ccc-------------------------ceecchHHHHHHHHHhhhhhHHH----HHHHHHHhccHHHHHHH
Confidence 2222222 000 02346899999999999999975 666443322 677777
Q ss_pred HHhcC------ChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHH
Q 000992 927 ELESM------PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 927 ~L~~l------~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~ 998 (1196)
+|+++ |....+++|.+|.|+|.+|.++|.++|. -..|+||+.+. +||+.|.+.+ .++++.+.+.++.|+
T Consensus 622 EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~--enRAlEmyTDl-RMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGH--ENRALEMYTDL-RMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred HHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCc--hhhHHHHHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 88876 4457789999999999999999999997 49999999999 9999999999 899999999999999
Q ss_pred HHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
|..+.++.+.||+|.+++|++.||++.....|+.+.++.|++++ +..++ +-+..+|.+|...+.+.-|++||.+ +|
T Consensus 699 WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl--d~~er-e~l~~~a~ylk~l~~~gLAaeIF~k-~g 774 (1081)
T KOG1538|consen 699 WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL--DKAER-EPLLLCATYLKKLDSPGLAAEIFLK-MG 774 (1081)
T ss_pred HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc--chhhh-hHHHHHHHHHhhccccchHHHHHHH-hc
Confidence 99999999999999999999999999999999888888999987 45565 4568899999999999999999999 99
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH
Q 000992 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITK 1111 (1196)
Q Consensus 1079 d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~ 1111 (1196)
|.+.-|+|+++.++|.||++||++|+ +++++
T Consensus 775 D~ksiVqlHve~~~W~eAFalAe~hP--e~~~d 805 (1081)
T KOG1538|consen 775 DLKSLVQLHVETQRWDEAFALAEKHP--EFKDD 805 (1081)
T ss_pred cHHHHhhheeecccchHhHhhhhhCc--ccccc
Confidence 99999999999999999999999995 77776
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=303.38 Aligned_cols=819 Identities=16% Similarity=0.186 Sum_probs=475.7
Q ss_pred cccCcccceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc----ceeecccc--ccccccCCCCCCEEEEEEccCCC
Q 000992 15 ELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA----SIKTAISA--EIEHIDLEPGDSITAFDYLMEKE 88 (1196)
Q Consensus 15 ~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~----~~~~~~~~--~l~~~~~~~~~~v~~v~~spd~~ 88 (1196)
.++... .+.+.+|+.+++-+.++..|+-+...-+...+.+.+ ...++|.. .|.+| .+.|.-+.|.-..+
T Consensus 10 ~iPnnv-kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH----~~sV~vvTWNe~~Q 84 (1189)
T KOG2041|consen 10 GIPNNV-KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH----NASVMVVTWNENNQ 84 (1189)
T ss_pred CCCCCc-eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC----cceEEEEEeccccc
Confidence 344444 789999999999999999999655544420111111 01111111 13444 46899999999999
Q ss_pred EEEEEECCCcEEEEECCCCeE-E--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccc-------
Q 000992 89 ALIVGTSSGLLLLHSVDGNAT-E--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL------- 158 (1196)
Q Consensus 89 ~La~as~dG~I~lw~~~~~~~-e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~------- 158 (1196)
.|-+.-.+|-|++|-.-.+.. | +-..-.+-|.+++|+-||+.++++-.||.|++=+.+++-+-+..+...
T Consensus 85 KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 85 KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 999999999999998865543 2 222335669999999999999999999999876544443332222111
Q ss_pred ---c--------Ccc-ccc--c----------------CccccCCCCeEEEEEc--------cCCceEEEeeccccccCC
Q 000992 159 ---A--------EGF-DVH--E----------------PELSSSFSFKSPISWR--------GDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 159 ---~--------~~~-~Vs--~----------------tqf~~~~~~v~~isWs--------pDG~~lAsvss~d~~~~~ 200 (1196)
. +++ ++- + ..|......+..|.|. ||.-.|| +...
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la-vcy~------ 237 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA-VCYA------ 237 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE-EEEc------
Confidence 0 000 110 1 1111233457778883 6888888 7763
Q ss_pred CCEEEEEECCCC-cEEEEeccCCCceeEEEEcCCCCeEEEEecCCC---CCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000992 201 HKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---ENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 201 d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~---~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1196)
++.++|-..++. +..-... .-.+....|+|+|..+|.++.+.. +...+.|.|+..-|...|.+..++ ..|.
T Consensus 238 nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg---~~It 312 (1189)
T KOG2041|consen 238 NGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG---SCIT 312 (1189)
T ss_pred CceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCC---ceee
Confidence 355555433221 1111111 134577899999999999987643 223457999999998888766553 3699
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEec-CCEE-EEEEEEEEecCCcEEEEEccCCCc-eEEEEecCCcEEEEEEEEee
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW-YLKYEIRYLRRDGIRFMWHPTKPL-QLICWTLDGQITTYNFIWTT 353 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~-~L~~~~~~g~~~~~~~~~~~ 353 (1196)
+|+|-..|-.+|.+... .|.+=++. +|.| |...++.+.-.. ++.|. .++. |++
T Consensus 313 ~lsWEg~gLriA~Avds----fiyfanIRP~ykWgy~e~TvVy~y~~-------~e~p~y~i~F-------------wdt 368 (1189)
T KOG2041|consen 313 GLSWEGTGLRIAIAVDS----FIYFANIRPEYKWGYIEETVVYVYQK-------EELPQYGIMF-------------WDT 368 (1189)
T ss_pred eeEEcCCceEEEEEecc----eEEEEeecccceEEEeeeEEEEEEcc-------CCCcceEEEE-------------Eec
Confidence 99999999999998765 47777754 8898 555555442211 22221 1111 111
Q ss_pred ecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000992 354 AVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 354 ~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g 433 (1196)
. . +.++++ ++ ....+++|+.+- -.|+.-..||.+.=++. ++..+
T Consensus 369 k-~--------nek~vK----------------~V---~~~~~~a~~~eh--CvL~~~~d~~~i~e~s~-----le~~~- 412 (1189)
T KOG2041|consen 369 K-T--------NEKTVK----------------TV---THFENMAFYREH--CVLINRQDDGVIPEYST-----LENRS- 412 (1189)
T ss_pred c-c--------Chhhhh----------------hh---cceeehheeccc--EEEEeccccCCCcchhh-----hhccc-
Confidence 1 0 111110 00 011233343333 33333333333322210 00000
Q ss_pred Cceeeeeecc-cc----cCCcEEE-EEEecCCeEEEEEecCCCCceEEEEeeccCCc---cccchhhhhhhhcccccccc
Q 000992 434 TEFVVEACIS-ET----AFGSVIH-LIWLGSHLLLSVSHHGPRHSNYFRGATLNEDG---LLGFYAQEIELACSEDHVQG 504 (1196)
Q Consensus 434 ~~~~~~~~~~-~~----~~~~v~~-l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 504 (1196)
..+...-|-+ +. ....++. ++.. ++..+++++. ....+|.+....-. ......+|.. .. .|..|.
T Consensus 413 ~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~---e~~~iWhy~~pK~~s~l~~~k~rkegr-~h-~Ddtp~ 486 (1189)
T KOG2041|consen 413 RVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASE---ERYFIWHYVLPKFNSVLAGVKIRKEGR-FH-GDDTPE 486 (1189)
T ss_pred ceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEecc---ccEEEEEEeccchhhhhhhhhhccccc-cc-CCCCcc
Confidence 0011000000 00 0011221 1111 3344444444 46667765432100 0001111211 01 122221
Q ss_pred cccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCC
Q 000992 505 LLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNG 584 (1196)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~ 584 (1196)
-.....-...-++..+...+|.+++-+ .+.+.+....|.|+.|+.+.. ....+.|-.|.-.
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s---dk~l~vareSG~I~rySl~nv-------~l~n~y~~n~~~y--------- 547 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS---DKFLMVARESGGIYRYSLNNV-------VLTNSYPVNPSIY--------- 547 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec---ceEEEEEeccCceEEEEecce-------eeeeccccCchhe---------
Confidence 100000111123445667788888753 466778889999999975430 1111233322211
Q ss_pred CCccEEEEEcCCCceEeCCEEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccc
Q 000992 585 PLKPLLFGLDDGGRLHVSGKIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRK 664 (1196)
Q Consensus 585 ~~~~~~~gL~~~~~L~~n~~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 664 (1196)
.++=||+|=. |......+.+-|.+|.- .+..-++
T Consensus 548 --------------------~~~lNCnstR------------lAiId~~gv~tf~dLd~-d~~g~ql------------- 581 (1189)
T KOG2041|consen 548 --------------------SIKLNCNSTR------------LAIIDLVGVVTFQDLDY-DFDGDQL------------- 581 (1189)
T ss_pred --------------------eEeeccCcch------------hhhhhhhceeeeeeccc-ccCccee-------------
Confidence 2334555422 22222334444444420 0000000
Q ss_pred cccccccccccCCCEEEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeeccc
Q 000992 665 EENISYINIWERGAKVIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCG 744 (1196)
Q Consensus 665 ~~~de~~R~vErGs~iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~ 744 (1196)
. - .-.+||- =|=.+.- +++--.-|.+|.|.|+ .+++-|.
T Consensus 582 --~-~-~~~~err--DVWd~~W--------------------------------a~dNp~llAlmeKtrm---yifrgnd 620 (1189)
T KOG2041|consen 582 --K-L-IYTSERR--DVWDYEW--------------------------------AQDNPNLLALMEKTRM---YIFRGND 620 (1189)
T ss_pred --e-e-eehhhhh--hhhhhhh--------------------------------ccCCchHHhhhhhceE---EEecCcC
Confidence 0 0 0011221 0111100 1111234557778886 4566552
Q ss_pred HHHHHHhHHHHHHhcCCcchHHHHHhhccCCccccc--ccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHH
Q 000992 745 WQAFLQSASEFVRQVNNLSYITEFVCAINNENITET--LYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKA 822 (1196)
Q Consensus 745 p~~F~~~~~~Fv~qv~~~~~l~lFls~L~~edvt~t--~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~ 822 (1196)
| .+++.-.-||++| ||.-.| +-.+- +..|+ ..+ ..--|+..-.++|++
T Consensus 621 p----------eEp~s~sGyIc~F------edLeitsVlld~I--l~~pE-----~pn-------k~~ii~~~ikslrD~ 670 (1189)
T KOG2041|consen 621 P----------EEPSSVSGYICLF------EDLEITSVLLDKI--LLTPE-----NPN-------KTCIIEVMIKSLRDV 670 (1189)
T ss_pred c----------cccccccceEEEe------eceEEEEEEHhhH--hcCcC-----CCC-------cceEEEEEehhhhhH
Confidence 5 3567777788876 221110 00000 10010 000 000111111223332
Q ss_pred HhhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhcc
Q 000992 823 LEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLY 902 (1196)
Q Consensus 823 l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~y 902 (1196)
+.= +-+. .||+|-+.|.. ...+.. +..|.+.||-..
T Consensus 671 ~~L----------------ve~v--gledA~qfiEd-------------nPHprL-------------WrllAe~Al~Kl 706 (1189)
T KOG2041|consen 671 MNL----------------VEAV--GLEDAIQFIED-------------NPHPRL-------------WRLLAEYALFKL 706 (1189)
T ss_pred HHH----------------HHHh--chHHHHHHHhc-------------CCchHH-------------HHHHHHHHHHHH
Confidence 210 0001 14555444320 001111 344567777666
Q ss_pred ChhHHHHHHHHhcCCcchh--hHHHHHHhcC-ChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHH
Q 000992 903 DLNLAAIVALNSQRDPKEF--LPYLQELESM-PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLG 979 (1196)
Q Consensus 903 D~~lal~vAq~sq~DpkeY--lpfL~~L~~l-~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~A 979 (1196)
+|+ .|++|+..+++| +.|+++|+.+ .+..||++|-.|.|+||+|.+.|.++ +|.|.|++++++. +.|.+.
T Consensus 707 ~l~----tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~--drrDLAielr~kl-gDwfrV 779 (1189)
T KOG2041|consen 707 ALD----TAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA--DRRDLAIELRKKL-GDWFRV 779 (1189)
T ss_pred hhh----hHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc--chhhhhHHHHHhh-hhHHHH
Confidence 655 479999999999 9999999999 78899999999999999999999998 7799999999999 999999
Q ss_pred Hhhc-C-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHH
Q 000992 980 LKLI-T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLA 1053 (1196)
Q Consensus 980 L~L~-~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~ 1053 (1196)
++|+ . |++......+..|+|+.+..+|++|+.+|.++|+.+.-++||++..++.++..+|+.++.+ .+++
T Consensus 780 ~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~----s~ll 855 (1189)
T KOG2041|consen 780 YQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPED----SELL 855 (1189)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcc----cchH
Confidence 9999 2 5567888999999999999999999999999999999999999999999999999998744 4688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchh
Q 000992 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDL 1108 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL 1108 (1196)
..+|+.|.+.|++++|.++|++ .++++.|+..|+..++|.+|+.||..|..|++
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr-~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLR-RSLPKAAVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence 8999999999999999999999 99999999999999999999999999987764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=299.61 Aligned_cols=319 Identities=13% Similarity=0.112 Sum_probs=246.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+..|.|++..|.++|.|..+..||+ .+..- ..| .++| ...|.+|+|+|||+.||+|+.||+|.+
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~--~TeTp---~~t----~KgH----~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDL--DTETP---LFT----CKGH----KNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeecc--CCCCc---cee----ecCC----ccEEEEEEECCCcchhhccccCCeEEE
Confidence 7899999999999999999999999999 44322 122 4556 368999999999999999999999999
Q ss_pred EECCCCeEE--EeeeecCcEEEEEE-----CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGNATE--VVGRVEGGVRFISP-----SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~aw-----SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||+.+++.. .+..|..+|++++| .|.+.+||+++.||+|+||+. ..+.++.... +|..
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~----~~~~~~~~ls-----------gHT~ 248 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT----KLGTCVRTLS-----------GHTA 248 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc----cCceEEEEec-----------cCcc
Confidence 999887543 45557999999999 678899999999999988753 2323332222 6778
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc-----------CCCCe-------
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM-----------PSGAN------- 236 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws-----------PdG~~------- 236 (1196)
.|.+|.|-++| ++. ++| .||+||||+...|.+..++.+|..+|+.|+.| |.|+.
T Consensus 249 ~VTCvrwGG~g-liy-SgS------~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~ 320 (480)
T KOG0271|consen 249 SVTCVRWGGEG-LIY-SGS------QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE 320 (480)
T ss_pred ceEEEEEcCCc-eEE-ecC------CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence 89999999999 566 566 57999999999999999999999999999877 44554
Q ss_pred ------------------EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcce
Q 000992 237 ------------------IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298 (1196)
Q Consensus 237 ------------------IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1196)
++|+++| .++.+|+.+-...-.-.+ ..|..-|+.+.|||||+++|+++-|. .
T Consensus 321 ~~~Al~rY~~~~~~~~erlVSgsDd------~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDk---S 390 (480)
T KOG0271|consen 321 QKKALERYEAVLKDSGERLVSGSDD------FTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDK---S 390 (480)
T ss_pred HHHHHHHHHHhhccCcceeEEecCC------ceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeeccc---c
Confidence 9999986 469999865322110011 22456799999999999999999999 9
Q ss_pred EEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
|+||+...++. + ..++.|-.....++|+.|..+ |..++ .+++|++|.++..-
T Consensus 391 VkLW~g~tGk~-l-asfRGHv~~VYqvawsaDsRL-lVS~S-------------------------kDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 391 VKLWDGRTGKF-L-ASFRGHVAAVYQVAWSADSRL-LVSGS-------------------------KDSTLKVWDVRTKK 442 (480)
T ss_pred eeeeeCCCcch-h-hhhhhccceeEEEEeccCccE-EEEcC-------------------------CCceEEEEEeeeee
Confidence 99999887652 2 234444333467888887753 33322 34467777766432
Q ss_pred CCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 379 MPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 379 vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+ . +.+ +|.+.|.+|.||||| +.+|+++.|..++||.
T Consensus 443 l----~-~DLpGh~DEVf~vDwspDG--~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 L----K-QDLPGHADEVFAVDWSPDG--QRVASGGKDKVLRLWR 479 (480)
T ss_pred e----c-ccCCCCCceEEEEEecCCC--ceeecCCCceEEEeec
Confidence 2 1 233 488999999999999 9999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=290.39 Aligned_cols=314 Identities=14% Similarity=0.153 Sum_probs=235.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
++.|.+++|+|+|..||+|+.|.|+++||++|... -+...|...|.|++|||||+.||+|+.||+|.+|+ |.++.
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd----pktg~ 190 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD----PKTGQ 190 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec----CCCCC
Confidence 46899999999999999999999999999998543 34555799999999999999999999999998865 43333
Q ss_pred ecccccCccccccCccccCCCCeEEEEEc-----cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWR-----GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWs-----pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sl 228 (1196)
+... .|.+|...|++++|- |.+++|| +++ .|+.+||||...|.++.++.+|...|.++
T Consensus 191 ~~g~----------~l~gH~K~It~Lawep~hl~p~~r~la-s~s------kDg~vrIWd~~~~~~~~~lsgHT~~VTCv 253 (480)
T KOG0271|consen 191 QIGR----------ALRGHKKWITALAWEPLHLVPPCRRLA-SSS------KDGSVRIWDTKLGTCVRTLSGHTASVTCV 253 (480)
T ss_pred cccc----------cccCcccceeEEeecccccCCCcccee-ccc------CCCCEEEEEccCceEEEEeccCccceEEE
Confidence 3221 233666777999995 5888999 565 57999999998889999999999999999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc-----------cCC------------
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN-----------CMS------------ 284 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS-----------pDg------------ 284 (1196)
.|--+| +|+|+|.|. +|++|+.+ |..-. +|++| ..+|+.|+.| |-|
T Consensus 254 rwGG~g-liySgS~Dr------tIkvw~a~dG~~~r--~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~ 323 (480)
T KOG0271|consen 254 RWGGEG-LIYSGSQDR------TIKVWRALDGKLCR--ELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK 323 (480)
T ss_pred EEcCCc-eEEecCCCc------eEEEEEccchhHHH--hhccc-chheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence 998887 899999874 69999854 32222 23333 4589988888 223
Q ss_pred -------------CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEE
Q 000992 285 -------------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW 351 (1196)
Q Consensus 285 -------------~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~ 351 (1196)
+.|++++.|. ++-||+-...+-- +.....|+.-...+.||||+.. ++.++-|..
T Consensus 324 Al~rY~~~~~~~~erlVSgsDd~---tlflW~p~~~kkp-i~rmtgHq~lVn~V~fSPd~r~-IASaSFDkS-------- 390 (480)
T KOG0271|consen 324 ALERYEAVLKDSGERLVSGSDDF---TLFLWNPFKSKKP-ITRMTGHQALVNHVSFSPDGRY-IASASFDKS-------- 390 (480)
T ss_pred HHHHHHHhhccCcceeEEecCCc---eEEEecccccccc-hhhhhchhhheeeEEECCCccE-EEEeecccc--------
Confidence 4599999999 9999986543210 0112244444478999999864 444443322
Q ss_pred eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcccc
Q 000992 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1196)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~ 430 (1196)
+++|.-+.+. ...++ +|-+.|..|+||.|. ..|++++.|.|+++|++.+......
T Consensus 391 -----------------VkLW~g~tGk-----~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 391 -----------------VKLWDGRTGK-----FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred -----------------eeeeeCCCcc-----hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeeeeccc
Confidence 2333222111 11233 377889999999999 8999999999999999988666555
Q ss_pred ccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
+.|+ .+.|..+-|+|||..+++++.+
T Consensus 447 LpGh------------~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 447 LPGH------------ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred CCCC------------CceEEEEEecCCCceeecCCCc
Confidence 6654 5789999999999999876653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=275.95 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=219.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
..|....||+|++.||++|=+|++++|+..+.. +..+-+|.+.|.++.|+|. +..||+++.||+|++|.-+ .+
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~----~e 251 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS----QE 251 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC----CC
Confidence 568889999999999999999999999998753 3345557899999999998 7799999999999887543 33
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.++... .+|...|..++|.|+|+||+ ++++ |.+-|+||..++..+-..|+|+..|.+|+|.|
T Consensus 252 ~~l~~l-----------~gH~~RVs~VafHPsG~~L~-Tasf------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~ 313 (459)
T KOG0272|consen 252 TPLQDL-----------EGHLARVSRVAFHPSGKFLG-TASF------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQP 313 (459)
T ss_pred cchhhh-----------hcchhhheeeeecCCCceee-eccc------ccchhhcccccchhhHhhcccccccceeEecC
Confidence 333332 36777899999999999999 5764 68999999999988888899999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
||.++|||+-|. .=++|| |.|.. ...|.+ |...|.+|+|||+|..||+++.|. ++++||+....-
T Consensus 314 DGSL~~tGGlD~------~~RvWDlRtgr~--im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~~-- 379 (459)
T KOG0272|consen 314 DGSLAATGGLDS------LGRVWDLRTGRC--IMFLAG-HIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRSE-- 379 (459)
T ss_pred CCceeeccCccc------hhheeecccCcE--EEEecc-cccceeeEeECCCceEEeecCCCC---cEEEeeeccccc--
Confidence 999999999874 356798 44432 223444 456899999999999999999999 999999874321
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cC
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF 390 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~ 390 (1196)
...+..|.+-+..|.++|+.+.-|...+-| +++++|.-..|. +.+++ +|
T Consensus 380 ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-------------------------~t~kiWs~~~~~-----~~ksLaGH 429 (459)
T KOG0272|consen 380 LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-------------------------NTVKIWSTRTWS-----PLKSLAGH 429 (459)
T ss_pred ceecccccchhhheEecccCCeEEEEcccC-------------------------cceeeecCCCcc-----cchhhcCC
Confidence 234555555557899999666534443323 345555444332 22455 59
Q ss_pred CCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 391 PTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
.+.|.+|+.|||+ +.+++++.|.+++||.
T Consensus 430 e~kV~s~Dis~d~--~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 430 EGKVISLDISPDS--QAIATSSFDRTIKLWR 458 (459)
T ss_pred ccceEEEEeccCC--ceEEEeccCceeeecc
Confidence 9999999999999 9999999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-24 Score=244.09 Aligned_cols=450 Identities=12% Similarity=0.096 Sum_probs=292.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
...-+..|+-+|.+.-++..+ ++.-++ .+... +.+ ..+| ...++-..|||.|.++|+|-..|+|+|
T Consensus 20 ~~~~ig~dpkgd~ilY~nGks-v~ir~i--~~~~~-~~i------YtEH----~~~vtVAkySPsG~yiASGD~sG~vRI 85 (603)
T KOG0318|consen 20 VPIIIGGDPKGDNILYTNGKS-VIIRNI--DNPAS-VDI------YTEH----AHQVTVAKYSPSGFYIASGDVSGKVRI 85 (603)
T ss_pred cceEeccCCCCCeEEEeCCCE-EEEEEC--CCccc-eee------eccc----cceeEEEEeCCCceEEeecCCcCcEEE
Confidence 556678899988877777666 554455 22221 112 3445 246888899999999999999999999
Q ss_pred EECCCC-e-EE-EeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeeeccccc-------Cccc----
Q 000992 102 HSVDGN-A-TE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELA-------EGFD---- 163 (1196)
Q Consensus 102 w~~~~~-~-~e-~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~l~~~~-------~~~~---- 163 (1196)
|+.... . +. .+.-+.++|..++|++||++||.+++- |.+.+|+. +..+-++..|... .+.+
T Consensus 86 Wdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS-G~SvGei~GhSr~ins~~~KpsRPfRi~ 164 (603)
T KOG0318|consen 86 WDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS-GNSVGEITGHSRRINSVDFKPSRPFRIA 164 (603)
T ss_pred EeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC-CCccceeeccceeEeeeeccCCCceEEE
Confidence 998652 2 22 455567899999999999999988653 34555642 3333333322221 1111
Q ss_pred -------cc---cC------ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec---cCCCc
Q 000992 164 -------VH---EP------ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE---LKAFM 224 (1196)
Q Consensus 164 -------Vs---~t------qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e---~~~~~ 224 (1196)
|. -. .|+.|..-|.++.|||||.+|||++ .|++|.+||-.+|+....++ +|.|.
T Consensus 165 T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g-------sDgki~iyDGktge~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 165 TGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG-------SDGKIYIYDGKTGEKVGELEDSDAHKGS 237 (603)
T ss_pred eccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec-------CCccEEEEcCCCccEEEEecCCCCcccc
Confidence 11 11 1226888999999999999999544 37999999999999999887 89999
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
+.+|+||||++.+++++.|+ ++++|+.+- ....+|.+...-+..-..+-|- ...|.+.+.++ +|-+.+
T Consensus 238 IfalsWsPDs~~~~T~SaDk------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G---~in~ln 306 (603)
T KOG0318|consen 238 IFALSWSPDSTQFLTVSADK------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSG---TINYLN 306 (603)
T ss_pred EEEEEECCCCceEEEecCCc------eEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCc---EEEEec
Confidence 99999999999999999976 599999653 3344444432222334456686 66788888888 899999
Q ss_pred ecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee----------------cCC-CeeEEEEcC
Q 000992 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA----------------VME-NSTALVIDG 366 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~----------------~~d-~~~v~viDg 366 (1196)
.++.. ..+.+..|....+.+.-+|++ .+|..++-+|.+..++..-..+ ..+ ..+..+.=+
T Consensus 307 ~~d~~--~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 307 PSDPS--VLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred ccCCC--hhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 88765 234555655555777778877 4466666667654322110000 000 111111112
Q ss_pred CEEEEeecccc------------------CCCCCc-----ee------------eeecCCCCEEEEEEecCCCCCEEEEE
Q 000992 367 SKILVTPLSLS------------------LMPPPM-----YL------------FSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1196)
Q Consensus 367 ~~l~lt~l~~~------------------~vpppm-----~~------------~~l~~~~~V~~Vafspdg~~~~lAs~ 411 (1196)
++|++.++... ..++.- |. .++...=.+.+||++|++ +.+|++
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVG 461 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVG 461 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEEEEe
Confidence 34455443211 111100 00 000111134689999999 899999
Q ss_pred ECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhh
Q 000992 412 LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQ 491 (1196)
Q Consensus 412 ~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1196)
+.||.|++|.+.+.....+. + ...+...+..++||||+.+||++- .+..+++|++.- .
T Consensus 462 G~Dgkvhvysl~g~~l~ee~-----~-----~~~h~a~iT~vaySpd~~yla~~D--a~rkvv~yd~~s-~--------- 519 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEA-----K-----LLEHRAAITDVAYSPDGAYLAAGD--ASRKVVLYDVAS-R--------- 519 (603)
T ss_pred cccceEEEEEecCCccccee-----e-----eecccCCceEEEECCCCcEEEEec--cCCcEEEEEccc-C---------
Confidence 99999999999864322110 0 013456899999999999999753 346788887621 0
Q ss_pred hhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 492 EIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
| ..-..-.-+.++|..++++| ++..++--+-|-.|+.|+.
T Consensus 520 ~--------------------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 520 E--------------------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred c--------------------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEc
Confidence 0 00011122467899999999 8888888889999999964
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=256.59 Aligned_cols=339 Identities=15% Similarity=0.181 Sum_probs=233.6
Q ss_pred ceeEEeeecCCCEEE-EEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLF-FASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~-~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+..++|+|..+.+| +++.+.....|++.+ ........+..-+-...+........|++++|+-||..||+|+.||.+
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ 259 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEA 259 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEE
Confidence 688999999999555 456688888898842 111110001000000011111124679999999999999999999999
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
+||+.++..+..++.|.++|.++.|+-+|.+|++++-|+++++|+. +++.... ||.-|...-..|
T Consensus 260 riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~----~~g~~~q-----------~f~~~s~~~lDV 324 (524)
T KOG0273|consen 260 RIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA----HTGTVKQ-----------QFEFHSAPALDV 324 (524)
T ss_pred EEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec----cCceEEE-----------eeeeccCCccce
Confidence 9999999999999999999999999999999999999999999763 2222211 122223333679
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
.|..+.+ || +++ .|+.|+|+-...-....++.+|.+.|..+-|.|.|++|||+|+|. ++++|.+.
T Consensus 325 dW~~~~~-F~-ts~------td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~------TlkiWs~~~ 390 (524)
T KOG0273|consen 325 DWQSNDE-FA-TSS------TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG------TLKIWSMGQ 390 (524)
T ss_pred EEecCce-Ee-ecC------CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC------eeEeeecCC
Confidence 9998886 55 344 368999999977778899999999999999999999999999975 69999853
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
+.-.. .|.. +...|..+.|||+|.. .|+|..+..+...
T Consensus 391 ~~~~~--~l~~-Hskei~t~~wsp~g~v---------------------------------------~~n~~~~~~l~sa 428 (524)
T KOG0273|consen 391 SNSVH--DLQA-HSKEIYTIKWSPTGPV---------------------------------------TSNPNMNLMLASA 428 (524)
T ss_pred Ccchh--hhhh-hccceeeEeecCCCCc---------------------------------------cCCCcCCceEEEe
Confidence 21100 1222 2446888888887731 1112122111111
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v 417 (1196)
. -.++|++|+.. .+.+.+++ .|..+|.+|+|||+| .++|+|+-||.|
T Consensus 429 s-------------------------~dstV~lwdv~-----~gv~i~~f~kH~~pVysvafS~~g--~ylAsGs~dg~V 476 (524)
T KOG0273|consen 429 S-------------------------FDSTVKLWDVE-----SGVPIHTLMKHQEPVYSVAFSPNG--RYLASGSLDGCV 476 (524)
T ss_pred e-------------------------cCCeEEEEEcc-----CCceeEeeccCCCceEEEEecCCC--cEEEecCCCCee
Confidence 1 12234444332 12233445 589999999999999 999999999999
Q ss_pred EEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
.+|+..+....+...| .+.|..++|+-+|..|+++..+ ..+++..+
T Consensus 477 ~iws~~~~~l~~s~~~-------------~~~Ifel~Wn~~G~kl~~~~sd--~~vcvldl 522 (524)
T KOG0273|consen 477 HIWSTKTGKLVKSYQG-------------TGGIFELCWNAAGDKLGACASD--GSVCVLDL 522 (524)
T ss_pred EeccccchheeEeecC-------------CCeEEEEEEcCCCCEEEEEecC--CCceEEEe
Confidence 9999987555433333 3468999999998877766544 45555544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-25 Score=246.66 Aligned_cols=391 Identities=13% Similarity=0.118 Sum_probs=263.2
Q ss_pred ceeEEeeecCCCEEEEEeCCC----cEEEEecccccccc--c--------------ceeeccccc-----cccccCC---
Q 000992 22 ILQFSALDIEQNRLFFASSAN----NIYSAQLSSFQNER--A--------------SIKTAISAE-----IEHIDLE--- 73 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~----~i~~~~~~~~~~~~--~--------------~~~~~~~~~-----l~~~~~~--- 73 (1196)
++.+++||.|+.+|..+.+-. ..+.||..++.++. + +++.|-.++ +.+.||-
T Consensus 105 ~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~ 184 (603)
T KOG0318|consen 105 PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKS 184 (603)
T ss_pred ccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeee
Confidence 788999999999999987632 57899975222221 0 111111111 1111110
Q ss_pred ---C-CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEee---eecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 74 ---P-GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 74 ---~-~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
. ...|.++.|+|||..+|+++.||+|.+||-.+++. -.++ .|+++|.+++||||++.++++|.|.++++|+-
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 0 24699999999999999999999999999887643 3444 68999999999999999999999999999973
Q ss_pred c-CceeeeeecccccCcc------------------ccc---------cCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 146 D-WDLLYENPLEELAEGF------------------DVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 146 ~-~d~~~~~~l~~~~~~~------------------~Vs---------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
. ...+.+..+...-+.+ .++ ..++.+|...|.+++-+|||++|- ++++
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-Sgsy--- 340 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-SGSY--- 340 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE-eecc---
Confidence 2 2333433332221111 111 334558999999999999999999 6764
Q ss_pred cCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CC---------------
Q 000992 198 SKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NG--------------- 259 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nG--------------- 259 (1196)
|+.|.=|+..+|...+.. ++|...+..++=+-.|.++-++-+| +++.... +|
T Consensus 341 ---DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd-------~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 341 ---DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD-------TLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred ---CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC-------eEEEEecccCcccccceeecCCCcee
Confidence 589999999888766543 6677777777777767766555433 1222210 00
Q ss_pred --------ee--------------EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 260 --------LE--------------RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 260 --------l~--------------~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
.. .+.+.+ +....+..+|.+||++..|+|+.|+ .|+++.++... ++.+...
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~--~~~y~~s~vAv~~~~~~vaVGG~Dg---kvhvysl~g~~--l~ee~~~ 483 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSI--PIGYESSAVAVSPDGSEVAVGGQDG---KVHVYSLSGDE--LKEEAKL 483 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceee--ccccccceEEEcCCCCEEEEecccc---eEEEEEecCCc--ccceeee
Confidence 00 000111 1123467899999999999999999 89999998643 2333222
Q ss_pred --ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEE
Q 000992 318 --LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1196)
Q Consensus 318 --~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~ 395 (1196)
+....+.+++||++.+ |+.+..++.+.. |++.. . .+ ...- |. -|.+.|+
T Consensus 484 ~~h~a~iT~vaySpd~~y-la~~Da~rkvv~----yd~~s-~--~~------~~~~-----------w~----FHtakI~ 534 (603)
T KOG0318|consen 484 LEHRAAITDVAYSPDGAY-LAAGDASRKVVL----YDVAS-R--EV------KTNR-----------WA----FHTAKIN 534 (603)
T ss_pred ecccCCceEEEECCCCcE-EEEeccCCcEEE----EEccc-C--ce------ecce-----------ee----eeeeeEE
Confidence 2223388999999987 677766666543 33320 0 00 1111 11 2778999
Q ss_pred EEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEE
Q 000992 396 EMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYF 475 (1196)
Q Consensus 396 ~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~ 475 (1196)
+|||||++ .++|+++-|.+|.+|+++.|....... ..|...|.++.|..+.+++-++.+ ..+++
T Consensus 535 ~~aWsP~n--~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH~~gVn~v~wlde~tvvSsG~D---a~iK~ 598 (603)
T KOG0318|consen 535 CVAWSPNN--KLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAHLGGVNSVAWLDESTVVSSGQD---ANIKV 598 (603)
T ss_pred EEEeCCCc--eEEEeccccceEEEEEccChhhheEec-----------cccccCceeEEEecCceEEeccCc---ceeEE
Confidence 99999999 899999999999999998654332222 234557999999999997665555 46788
Q ss_pred EEe
Q 000992 476 RGA 478 (1196)
Q Consensus 476 ~~~ 478 (1196)
|++
T Consensus 599 W~v 601 (603)
T KOG0318|consen 599 WNV 601 (603)
T ss_pred ecc
Confidence 876
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=259.91 Aligned_cols=264 Identities=14% Similarity=0.099 Sum_probs=217.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
++....|..+++.|.++|=++....|+. .+.+. +.+ |.+| .+.|.++.|+|. +..||+++.||+|
T Consensus 177 Pis~~~fS~ds~~laT~swsG~~kvW~~--~~~~~---~~~----l~gH----~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSGLVKVWSV--PQCNL---LQT----LRGH----TSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cceeeEeecCCCeEEEeecCCceeEeec--CCcce---eEE----Eecc----ccceeeEEEccCCCccceeeeccCCce
Confidence 7788889999999999999999999998 55533 222 6777 468999999998 6799999999999
Q ss_pred EEEECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 100 LLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 100 ~lw~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||+.++. .+..+.+|...|..++|.|+|++|++++-|.+-++ ||.-+...+.... ||+.+|.+
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl----WD~~tk~ElL~QE-----------GHs~~v~~ 308 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL----WDLETKSELLLQE-----------GHSKGVFS 308 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh----cccccchhhHhhc-----------ccccccce
Confidence 99999874 34333346789999999999999999999998755 6665655554443 78888899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
|+|.|||..++ +++. |..-||||..+|.++..+++|...|.+++|||+|-.||+|+.| .++++|+..
T Consensus 309 iaf~~DGSL~~-tGGl------D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D------nt~kVWDLR 375 (459)
T KOG0272|consen 309 IAFQPDGSLAA-TGGL------DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD------NTCKVWDLR 375 (459)
T ss_pred eEecCCCceee-ccCc------cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC------CcEEEeeec
Confidence 99999999888 5764 5788999999999999999999999999999999999999997 469999965
Q ss_pred CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 259 GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
+.+. -++++.| .+-|..|.|+| -|.+|++++.|. +++||...+ |.+.+.+..|...+.++.-+|++..
T Consensus 376 ~r~~-ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~---t~kiWs~~~--~~~~ksLaGHe~kV~s~Dis~d~~~ 444 (459)
T KOG0272|consen 376 MRSE-LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDN---TVKIWSTRT--WSPLKSLAGHEGKVISLDISPDSQA 444 (459)
T ss_pred cccc-ceecccc-cchhhheEecccCCeEEEEcccCc---ceeeecCCC--cccchhhcCCccceEEEEeccCCce
Confidence 4322 2345543 56799999999 789999999999 999999877 5566778877666677888887754
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=236.92 Aligned_cols=293 Identities=14% Similarity=0.176 Sum_probs=217.3
Q ss_pred EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+..|.+.|+.++|+|- |..||++++|+.|++|+.. .+.......-.+ +|.-.|.+|+|||.|+||
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~------------~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD------------GHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc------------cchheeeeeeecCCCcEE
Confidence 34456788999999999 9999999999999999754 333222211111 345567999999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD 266 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~ 266 (1196)
| ++|. |.++-||....| ++..++|+|+..|.+++||++|++||++++|+ .|-+||..+ ..+|.
T Consensus 77 a-~aSF------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK------SVWiWe~de--ddEfe 141 (312)
T KOG0645|consen 77 A-SASF------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK------SVWIWEIDE--DDEFE 141 (312)
T ss_pred E-Eeec------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC------eEEEEEecC--CCcEE
Confidence 9 7875 589999988655 57788999999999999999999999999986 499999763 23453
Q ss_pred ec---cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCC
Q 000992 267 IN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 267 l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.- .+|...|..+.|.|.-.+|++++.|. ||++|... ...|-+.|.|..+.....++.|+|.|. +|...+.++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~ 217 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDG 217 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCc
Confidence 22 34566799999999999999999999 99999987 778989898887655558888998874 356655555
Q ss_pred cEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
.+ ++|-.. +..+..|...+..|+|. +| .||+++.|+.|+||.-
T Consensus 218 tv-------------------------~Iw~~~--------~~~~~~~sr~~Y~v~W~-~~---~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 218 TV-------------------------SIWRLY--------TDLSGMHSRALYDVPWD-NG---VIASGGGDDAIRLFKE 260 (312)
T ss_pred ce-------------------------Eeeeec--------cCcchhcccceEeeeec-cc---ceEeccCCCEEEEEEe
Confidence 44 333321 11122367789999999 66 8999999999999987
Q ss_pred CCCCccccccCCceeeeeecccccCCcEEEEEEecC-CeEEEEEecCCCCceEEEEe
Q 000992 423 PAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGS-HLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d-~~lla~~~~~~~~~~~~~~~ 478 (1196)
+.. ..++.+.+.......|...|.++.|.|. ..+|++++++ ..+.+|.+
T Consensus 261 s~~-----~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD--G~v~~W~l 310 (312)
T KOG0645|consen 261 SDS-----PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD--GIVNFWEL 310 (312)
T ss_pred cCC-----CCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC--ceEEEEEe
Confidence 631 1112222111111245558999999993 5568888776 57777765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-23 Score=240.54 Aligned_cols=448 Identities=14% Similarity=0.123 Sum_probs=321.1
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
.++|++||..|++-..+. +..+|+ .++.+ -|+| +.....|..++.||+|..|.+.-+.|...+.+.
T Consensus 19 nl~ft~dG~sviSPvGNr-vsv~dL--knN~S----~Tl~-------~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~ 84 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNR-VSVFDL--KNNKS----YTLP-------LETRYNITRIALSPDGTLLLAVDERGRALLVSL 84 (893)
T ss_pred cEEECCCCCEEEeccCCE-EEEEEc--cCCcc----eeEE-------eecCCceEEEEeCCCceEEEEEcCCCcEEEEec
Confidence 478999999998876665 778888 33332 1222 223467999999999999999999999999987
Q ss_pred CCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
....+---=+...+|-|+.|||||+.+|++.+. -+.+|.. ...+.+ .+.+.. -...|.+|.+.+.+|.||-|
T Consensus 85 ~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn-~lqiw~~-P~~~~~-~~~pFv-----l~r~~~g~fddi~si~Ws~D 156 (893)
T KOG0291|consen 85 LSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGN-LLQIWHA-PGEIKN-EFNPFV-----LHRTYLGHFDDITSIDWSDD 156 (893)
T ss_pred ccceeeEEEeecCccceEEECCCCcEEEEEecc-eeEEEec-Ccchhc-ccCcce-----EeeeecCCccceeEEEeccC
Confidence 653221111357899999999999999998875 6778742 222221 111111 01234478899999999999
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC----
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---- 258 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---- 258 (1196)
.++|+ +++ .|.+.|||+.+.-+ ....+.+|.+.|-+.-|..+..-|.+.+.|+ .+-.|+-+
T Consensus 157 Sr~l~-~gs------rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG------~l~~W~~~~~P~ 223 (893)
T KOG0291|consen 157 SRLLV-TGS------RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDG------ALFVWTCDLRPP 223 (893)
T ss_pred CceEE-ecc------ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCc------eEEEEEecCCCc
Confidence 99999 676 57999999984322 2456778999999999999999999988864 46667543
Q ss_pred --------------------Cee--EEEEE--ec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 259 --------------------GLE--RSSFD--IN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 259 --------------------Gl~--~~~f~--l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
|.. |.-|- ++ ......|.+.+|++-..+||++-..+ ...|+.+....
T Consensus 224 ~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG---~f~LyelP~f~-- 298 (893)
T KOG0291|consen 224 ELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG---EFGLYELPDFN-- 298 (893)
T ss_pred ccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC---eeEEEecCCce--
Confidence 211 11111 11 12236799999999999999999998 77899887653
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeee-----------------cCCCeeEEEEcCCEEEEe
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTA-----------------VMENSTALVIDGSKILVT 372 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~-----------------~~d~~~v~viDg~~l~lt 372 (1196)
+.+.+.........+.|+..|.. |++++. -|++.+|+|.-..- |+++-+++..|+++|++|
T Consensus 299 lih~LSis~~~I~t~~~N~tGDW-iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDW-IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEEeecccceeeEEEecccCCE-EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 56667665444578899988876 677764 36777777653211 455566777888899988
Q ss_pred eccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCcee--------------
Q 000992 373 PLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFV-------------- 437 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~-------------- 437 (1196)
+.. ...|..++ +|.+.|..|.|+..| +.+.+.+-||+|+.||+..-.+..++.++...
T Consensus 378 n~~-----SgfC~vTFteHts~Vt~v~f~~~g--~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 378 NTQ-----SGFCFVTFTEHTSGVTAVQFTARG--NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred ecc-----CceEEEEeccCCCceEEEEEEecC--CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 764 45788888 599999999999999 99999999999999998653332222221111
Q ss_pred ---------eee-e--------cccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhccc
Q 000992 438 ---------VEA-C--------ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSE 499 (1196)
Q Consensus 438 ---------~~~-~--------~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (1196)
+.. + .+.+|-+.|..++|+|++..||+++.+ .++.+|++-- .
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~if~-s----------------- 510 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDIFS-S----------------- 510 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEeec-c-----------------
Confidence 000 0 013466689999999999999999988 6899998720 0
Q ss_pred ccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccc
Q 000992 500 DHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRV 554 (1196)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~ 554 (1196)
.+ .....++...|..++++| +++.+++.+.||.+-.|+...
T Consensus 511 ---------~~----~vEtl~i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 511 ---------SG----TVETLEIRSDVLAVSFRP-DGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ---------Cc----eeeeEeeccceeEEEEcC-CCCeEEEEEecceEEEEEhhh
Confidence 00 122466778899999999 999999999999999997643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-23 Score=240.17 Aligned_cols=235 Identities=12% Similarity=0.158 Sum_probs=193.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.++|-+|.++|.-..+..+.-+|+|.|||.+++.+ ....-.+-+|+++.|=+--+++++|+.|..|++++- ..+.+
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-- 90 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-- 90 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee--
Confidence 46899999999999999999999999999998643 344444678999999999999999999999998762 12222
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.+|.+|++-+.+|+-.|.--|+. ++| .|-+||+||-+.+ .+.+++|+|...|..|+|.
T Consensus 91 --------------~~FeAH~DyIR~iavHPt~P~vL-tsS------DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 91 --------------KTFEAHSDYIRSIAVHPTLPYVL-TSS------DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred --------------EEeeccccceeeeeecCCCCeEE-ecC------CccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 25778999999999999999999 565 4789999998433 5778999999999999999
Q ss_pred C-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC--CeeEEEEccCCcceEEEEEecCCE
Q 000992 232 P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 P-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg--~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
| |-+.+||++-|. +|++|.. |..+-.|+|.+| +..|+.|.+=|-| .+|.+|+.|. +|++||.+|-.
T Consensus 150 PkD~ntFaS~sLDr------TVKVWsl-gs~~~nfTl~gH-ekGVN~Vdyy~~gdkpylIsgaDD~---tiKvWDyQtk~ 218 (794)
T KOG0276|consen 150 PKDPNTFASASLDR------TVKVWSL-GSPHPNFTLEGH-EKGVNCVDYYTGGDKPYLISGADDL---TIKVWDYQTKS 218 (794)
T ss_pred CCCccceeeeeccc------cEEEEEc-CCCCCceeeecc-ccCcceEEeccCCCcceEEecCCCc---eEEEeecchHH
Confidence 9 568999999975 6999986 445667888854 5679999997755 5999999999 99999988743
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
+.|++..|.+....+.|||+-|. +..++.||++.+
T Consensus 219 --CV~TLeGHt~Nvs~v~fhp~lpi-iisgsEDGTvri 253 (794)
T KOG0276|consen 219 --CVQTLEGHTNNVSFVFFHPELPI-IISGSEDGTVRI 253 (794)
T ss_pred --HHHHhhcccccceEEEecCCCcE-EEEecCCccEEE
Confidence 24678887777788999999986 677777888765
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-23 Score=244.19 Aligned_cols=433 Identities=14% Similarity=0.113 Sum_probs=306.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++..+.|...+....++.-.++..||+ -+++....+.++.. ...|+++.=+||.-.||+|.+||.|+|
T Consensus 23 N~~~~~~~~~~Gr~va~~a~E~vn~Wdl--Rtge~~~~l~~~~~---------k~evt~l~~~~d~l~lAVGYaDGsVqi 91 (888)
T KOG0306|consen 23 NINFVVKRSGKGRAVAVSALEQVNIWDL--RTGEIEKKLILLKK---------KAEVTCLRSSDDILLLAVGYADGSVQI 91 (888)
T ss_pred ceeEEEeecCCCcEEEEeccccEeEEee--ecchhhhhhhhhcc---------cceEEEeeccCCcceEEEEecCceEEe
Confidence 6677778865555555555556999999 66654323221110 136889988999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+..++.+. ....|...|+++.|+-+|..||+||.|+.|++|+ .+.|.-+-. .++|.+.++..-
T Consensus 92 f~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwD----lV~E~Gl~r-----------L~GHkd~iT~~~ 156 (888)
T KOG0306|consen 92 FSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWD----LVGEEGLFR-----------LRGHKDSITQAL 156 (888)
T ss_pred eccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEE----eccceeeEE-----------eecchHHHhHHh
Confidence 999876443 4445799999999999999999999999999864 444433322 226777778888
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC---
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--- 257 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--- 257 (1196)
|..+..+++|+ + .|.+||+||.++-.+..+.-.|.+.++.+++.+ -.+++.+ .+ ..+.+|+.
T Consensus 157 F~~~~~~lvS~-s------KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-~~lvt~~-~d------se~~v~~L~~~ 221 (888)
T KOG0306|consen 157 FLNGDSFLVSV-S------KDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-KLLVTAG-TD------SELKVWELAFE 221 (888)
T ss_pred ccCCCeEEEEe-c------cCceEEEEecccceeeeEEecccceEEEEEEec-ceEEEEe-cC------CceEEEEeecc
Confidence 88877777743 3 479999999988888888877888888888887 2223322 21 11222221
Q ss_pred --------------------------------------------------------------------------------
Q 000992 258 -------------------------------------------------------------------------------- 257 (1196)
Q Consensus 258 -------------------------------------------------------------------------------- 257 (1196)
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence
Q ss_pred -----------------------------CCeeEEE-----------EEec-----------------cCCCCcEEEEEE
Q 000992 258 -----------------------------NGLERSS-----------FDIN-----------------EQIDSTVELLKW 280 (1196)
Q Consensus 258 -----------------------------nGl~~~~-----------f~l~-----------------~~~~~~V~~laW 280 (1196)
.+..... +.++ ..|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0000000 0000 112346889999
Q ss_pred ccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE-----------
Q 000992 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF----------- 349 (1196)
Q Consensus 281 SpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~----------- 349 (1196)
|.|+.++++++.+. |+||++.+..... ++ .........|=|-+ ..+.+++.+|.+..++.
T Consensus 382 S~d~~~~~Sga~~S----ikiWn~~t~kciR--Ti--~~~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 382 SSDSILLASGAGES----IKIWNRDTLKCIR--TI--TCGYILASKFVPGD-RYIVLGTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred ecCceeeeecCCCc----EEEEEccCcceeE--Ee--ccccEEEEEecCCC-ceEEEeccCCceEEEEeehhhhhhhhhc
Confidence 99999999998775 9999999764321 22 22233666777755 45888888898776554
Q ss_pred ----EEeee--cCCCeeEEEEcCCEEEEeeccccCC-CCCce-------eeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 350 ----IWTTA--VMENSTALVIDGSKILVTPLSLSLM-PPPMY-------LFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 350 ----~~~~~--~~d~~~v~viDg~~l~lt~l~~~~v-pppm~-------~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
.|+++ |++.+.+.+..++++++|+|..-.- |-... .+++++++.|.+|++|||| ..||++.-|+
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdn 530 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDN 530 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccC
Confidence 47777 7888999999999999999975433 32221 1567889999999999999 9999999999
Q ss_pred cEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhh
Q 000992 416 CLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIEL 495 (1196)
Q Consensus 416 ~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (1196)
||++|-+++-.-.-.+.||. -.|.++--+||+.++++++.+ .++++|-+++..
T Consensus 531 TVkVyflDtlKFflsLYGHk------------LPV~smDIS~DSklivTgSAD--KnVKiWGLdFGD------------- 583 (888)
T KOG0306|consen 531 TVKVYFLDTLKFFLSLYGHK------------LPVLSMDISPDSKLIVTGSAD--KNVKIWGLDFGD------------- 583 (888)
T ss_pred eEEEEEecceeeeeeecccc------------cceeEEeccCCcCeEEeccCC--CceEEeccccch-------------
Confidence 99999998744333445553 358888889999999999887 578899876633
Q ss_pred hcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 496 ACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
|. ++...++..|..+.+-| ...-++....||+|-.|+.
T Consensus 584 -CH-----------------KS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 584 -CH-----------------KSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred -hh-----------------hhhhcccCceeEEEEcc-cceeEEEecCcceEEeech
Confidence 11 22355667788888777 5666667899999999975
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-25 Score=231.32 Aligned_cols=282 Identities=15% Similarity=0.157 Sum_probs=206.4
Q ss_pred CCEEEEEEccC-CCEEEEEECCCcEEEEECCC-CeEE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc---
Q 000992 76 DSITAFDYLME-KEALIVGTSSGLLLLHSVDG-NATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD--- 146 (1196)
Q Consensus 76 ~~v~~v~~spd-~~~La~as~dG~I~lw~~~~-~~~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~--- 146 (1196)
+++.+++|+|- |..||+++.|..|++|+..+ .... +-+.|...|+.+||||.|++||+||-|.++.+|.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e 94 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE 94 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc
Confidence 68999999999 89999999999999999984 2222 335678999999999999999999999999999754
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCC
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAF 223 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~ 223 (1196)
|+.+..+. ||.+.|-+++||++|.|||| .+ .|+.|-||...++ ++.+.+++|..
T Consensus 95 fecv~~lE----------------GHEnEVK~Vaws~sG~~LAT-CS------RDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 95 FECVATLE----------------GHENEVKCVAWSASGNYLAT-CS------RDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred eeEEeeee----------------ccccceeEEEEcCCCCEEEE-ee------CCCeEEEEEecCCCcEEEEeeeccccc
Confidence 44433332 67788999999999999995 44 4789999998644 46778899999
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-Cee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEE
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~l 301 (1196)
-|..+.|+|.-.+|+|+|.| ++|++|... +.- .-..+|.+ +++.|++++|+|+|..|++++.|+ +|+|
T Consensus 152 DVK~V~WHPt~dlL~S~SYD------nTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G~rl~s~sdD~---tv~I 221 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYD------NTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIGSRLVSCSDDG---TVSI 221 (312)
T ss_pred cccEEEEcCCcceeEEeccC------CeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCCceEEEecCCc---ceEe
Confidence 99999999999999999997 469999764 211 00113333 356899999999999999999999 9999
Q ss_pred EEecCCEEEEEEEEEE-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 302 CFFSNNHWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 302 W~~~n~~wylkq~l~~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
|..-. .+.. +......+.|. ++ .|+.+.+|+.+..+.-. ..| |+....+
T Consensus 222 w~~~~-------~~~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s--~~~---------d~p~~~l--------- 271 (312)
T KOG0645|consen 222 WRLYT-------DLSGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKES--DSP---------DEPSWNL--------- 271 (312)
T ss_pred eeecc-------CcchhcccceEeeeec-cc--ceEeccCCCEEEEEEec--CCC---------CCchHHH---------
Confidence 98321 1111 11112558888 33 25666556555432211 001 1111110
Q ss_pred CCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 381 ppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.......|...|++|.|.|... ++|++++.||+|++|.+.
T Consensus 272 --~~~~~~aHe~dVNsV~w~p~~~-~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 272 --LAKKEGAHEVDVNSVQWNPKVS-NRLASGGDDGIVNFWELE 311 (312)
T ss_pred --HHhhhcccccccceEEEcCCCC-CceeecCCCceEEEEEec
Confidence 0011223777899999999532 799999999999999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-23 Score=240.62 Aligned_cols=473 Identities=12% Similarity=0.039 Sum_probs=307.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++.|.|++..+.++.+.- +-.|......++ +.+-=.+.....++ .+.|++|.|+.|++.|++++.|-+++|
T Consensus 98 ~v~~i~fSPng~~fav~~gn~-lqiw~~P~~~~~-~~~pFvl~r~~~g~----fddi~si~Ws~DSr~l~~gsrD~s~rl 171 (893)
T KOG0291|consen 98 GVGAIKFSPNGKFFAVGCGNL-LQIWHAPGEIKN-EFNPFVLHRTYLGH----FDDITSIDWSDDSRLLVTGSRDLSARL 171 (893)
T ss_pred ccceEEECCCCcEEEEEecce-eEEEecCcchhc-ccCcceEeeeecCC----ccceeEEEeccCCceEEeccccceEEE
Confidence 678889999988777776554 666776422221 11100001111222 478999999999999999999999999
Q ss_pred EECCCCe---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc------------Cc---cc
Q 000992 102 HSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA------------EG---FD 163 (1196)
Q Consensus 102 w~~~~~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~------------~~---~~ 163 (1196)
|..+..+ ....++|.+.|.+.-|+.|...|.+++.||.+.+|+.+-.|.....-..+. +. +.
T Consensus 172 ~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~ 251 (893)
T KOG0291|consen 172 FGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKI 251 (893)
T ss_pred EEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcce
Confidence 9987632 345666899999999999999999999999999998653332211110000 00 00
Q ss_pred cc---cCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 164 VH---EPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 164 Vs---~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+. ...|- .....+.+.+|.+--..|| ++. ..+.+.+|..-+=.++..+.-.+..+..++|+..|.+||.
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv-vgF------ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~ 324 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLV-VGF------SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAF 324 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEE-EEe------cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEE
Confidence 00 00011 2236788999999999999 776 3478899998555666666545577899999999999999
Q ss_pred EecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
++.. -..+.+||.. ...|.++.+ |-..+.++++||||+++|+|++|+ .|++|++...-+. .++.-|
T Consensus 325 g~~k-----lgQLlVweWq---sEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg---KVKvWn~~SgfC~--vTFteH 391 (893)
T KOG0291|consen 325 GCSK-----LGQLLVWEWQ---SESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG---KVKVWNTQSGFCF--VTFTEH 391 (893)
T ss_pred cCCc-----cceEEEEEee---ccceeeeccccccceeeEEECCCCcEEEeccCCC---cEEEEeccCceEE--EEeccC
Confidence 9875 3468889853 334566632 356799999999999999999999 8999999875432 233323
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee------cCCCee----------EEEE---cCCEEEEeeccccCC
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------VMENST----------ALVI---DGSKILVTPLSLSLM 379 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------~~d~~~----------v~vi---Dg~~l~lt~l~~~~v 379 (1196)
...++.+.|+..+.- +...+.||++..+++..-.+ |.+... +..+ |-=.|.+|.+..+..
T Consensus 392 ts~Vt~v~f~~~g~~-llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 392 TSGVTAVQFTARGNV-LLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred CCceEEEEEEecCCE-EEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 233488999998764 66677799998766542111 222211 1111 222478888876543
Q ss_pred CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC
Q 000992 380 PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 380 pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
-.-++ +|.+||.+++|+|+| +.||+++.|.||++|+.-..... .. ++. ....+..++|.|||
T Consensus 471 lDiLs----GHEgPVs~l~f~~~~--~~LaS~SWDkTVRiW~if~s~~~--vE--tl~--------i~sdvl~vsfrPdG 532 (893)
T KOG0291|consen 471 LDILS----GHEGPVSGLSFSPDG--SLLASGSWDKTVRIWDIFSSSGT--VE--TLE--------IRSDVLAVSFRPDG 532 (893)
T ss_pred eehhc----CCCCcceeeEEcccc--CeEEeccccceEEEEEeeccCce--ee--eEe--------eccceeEEEEcCCC
Confidence 22221 589999999999999 89999999999999998532111 00 011 12368899999999
Q ss_pred eEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEE
Q 000992 460 LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539 (1196)
Q Consensus 460 ~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 539 (1196)
+-||++.-+ .++.+|+..... +-..+.++-|..++-. ....++..+ -........++.++ |++.++
T Consensus 533 ~elaVaTld--gqItf~d~~~~~--------q~~~IdgrkD~~~gR~--~~D~~ta~~-sa~~K~Ftti~ySa-DG~~Il 598 (893)
T KOG0291|consen 533 KELAVATLD--GQITFFDIKEAV--------QVGSIDGRKDLSGGRK--ETDRITAEN-SAKGKTFTTICYSA-DGKCIL 598 (893)
T ss_pred CeEEEEEec--ceEEEEEhhhce--------eeccccchhhcccccc--ccceeehhh-cccCCceEEEEEcC-CCCEEE
Confidence 999998765 588899864321 0000111111000000 000010000 01124467788887 888887
Q ss_pred EEeeCCeEEEEecc
Q 000992 540 LQFHGGKISEYMSR 553 (1196)
Q Consensus 540 ~~~~dG~v~~~~~~ 553 (1196)
.......|-.|+..
T Consensus 599 AgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 599 AGGESNSICIYDVP 612 (893)
T ss_pred ecCCcccEEEEECc
Confidence 77777777777654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=229.34 Aligned_cols=281 Identities=15% Similarity=0.092 Sum_probs=214.2
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++-+. .++++++|-|..|+.|+++ ..+...-+. -..+.+| ...|.++..++||++..+++-||+++
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~--~dd~~~G~~--~r~~~GH----sH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLT--SDDIKYGVP--VRRLTGH----SHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEec--cCccccCce--eeeeecc----ceEecceEEccCCceEEeccccceEE
Confidence 7888887766 6899999999999999994 332211000 0114555 24799999999999999999999999
Q ss_pred EEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||+.+++. ..+| |...|.+++||||...++++|.|+||++|+...+...+..-. .+.+.|.+
T Consensus 89 lWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~--------------~~~~WVsc 153 (315)
T KOG0279|consen 89 LWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED--------------SHREWVSC 153 (315)
T ss_pred EEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC--------------CCcCcEEE
Confidence 999998754 3666 588899999999999999999999999987665554443321 12367899
Q ss_pred EEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+.|+|. .-+|+ +++ .|++|||||.++-++..++-+|.+.++.+++||||.++|+|+.+ ..+.+|+
T Consensus 154 vrfsP~~~~p~Iv-s~s------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkd------g~~~Lwd 220 (315)
T KOG0279|consen 154 VRFSPNESNPIIV-SAS------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKD------GEAMLWD 220 (315)
T ss_pred EEEcCCCCCcEEE-Ecc------CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCC------ceEEEEE
Confidence 999998 56777 455 57999999998888888999999999999999999999999886 4699999
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEec---CCc--EEEEEcc
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLR---RDG--IRFMWHP 329 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~---~~~--~~v~Wsp 329 (1196)
.|-.++- +.+ .+...|.+++|||+--.|+.+.... |+||+.....- -|+.+...+. ..+ .+++|++
T Consensus 221 L~~~k~l-ysl--~a~~~v~sl~fspnrywL~~at~~s----IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~ 293 (315)
T KOG0279|consen 221 LNEGKNL-YSL--EAFDIVNSLCFSPNRYWLCAATATS----IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA 293 (315)
T ss_pred ccCCcee-Eec--cCCCeEeeEEecCCceeEeeccCCc----eEEEeccchhhhhhccccccccccccCCcEEEEEEEcC
Confidence 8754442 233 3446799999999999999998876 99999876432 1233333321 122 7899999
Q ss_pred CCCceEEEEecCCcEEE
Q 000992 330 TKPLQLICWTLDGQITT 346 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~ 346 (1196)
+|.. |..+..+|.+..
T Consensus 294 dG~t-Lf~g~td~~irv 309 (315)
T KOG0279|consen 294 DGQT-LFAGYTDNVIRV 309 (315)
T ss_pred CCcE-EEeeecCCcEEE
Confidence 9864 666666776653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-23 Score=235.89 Aligned_cols=779 Identities=15% Similarity=0.169 Sum_probs=440.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
-+..+||-|||..|..+.++. ++.+|.| -+.. ..+ |++| .+.|..|+|+.||+.+|+|++|..|++
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~n--dG~l---lqt----LKgH----KDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTS--DGTL---LQP----LKGH----KDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCC--Cccc---ccc----cccc----cceEEEEEEccCCceeccCCCceeEEE
Confidence 567799999999999888877 8899984 2221 122 6666 468999999999999999999999999
Q ss_pred EECCC-CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~-~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+..- |.+. =+|.+.|.||+|+|=.+.||+++-. ..-+|+..-+.+... -...++.+.+
T Consensus 80 W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-----------------kss~R~~~Cs 139 (1081)
T KOG1538|consen 80 WTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-----------------KSSSRIICCS 139 (1081)
T ss_pred ecccccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-----------------hhheeEEEee
Confidence 99753 2222 2468899999999999999999864 244554322111111 1124678999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc---CCCceeEEEEcCCC-----CeEEEEecCCCCCCCCeE
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---KAFMGAVLEWMPSG-----ANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~---~~~~v~slawsPdG-----~~IAs~s~d~~~~~~~~V 252 (1196)
|..||+||| .+- +++||-|.|. +|+..-..+. ....+++|+|+|+. ..||+.... .++
T Consensus 140 WtnDGqyla-lG~------~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~------qTL 205 (1081)
T KOG1538|consen 140 WTNDGQYLA-LGM------FNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWG------QTL 205 (1081)
T ss_pred ecCCCcEEE-Eec------cCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecc------cee
Confidence 999999999 875 5789999998 7765544432 45678999999974 367777663 568
Q ss_pred EEEeCCCeeEE-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCC
Q 000992 253 VFYERNGLERS-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1196)
Q Consensus 253 ~~~e~nGl~~~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1196)
.|+...|...+ +-+|. -.-..|++-|+|+++.+|+.|+ .+++++...-. -.++.--....+++.-+|.+
T Consensus 206 SFy~LsG~~Igk~r~L~----FdP~CisYf~NGEy~LiGGsdk---~L~~fTR~Gvr---LGTvg~~D~WIWtV~~~PNs 275 (1081)
T KOG1538|consen 206 SFYQLSGKQIGKDRALN----FDPCCISYFTNGEYILLGGSDK---QLSLFTRDGVR---LGTVGEQDSWIWTVQAKPNS 275 (1081)
T ss_pred EEEEecceeecccccCC----CCchhheeccCCcEEEEccCCC---ceEEEeecCeE---EeeccccceeEEEEEEccCC
Confidence 89988887665 21222 2244789999999999999999 78999877522 11221100112677778877
Q ss_pred CceEEEEecCCcEEEEEEEEeeec--------CCCeeEEE-----EcCCEEEEeeccccCCCCCceeeeecCCCCEEEEE
Q 000992 332 PLQLICWTLDGQITTYNFIWTTAV--------MENSTALV-----IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMA 398 (1196)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~--------~d~~~v~v-----iDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Va 398 (1196)
.. ..+++.||++.+++.++++-. ....+.-| +-+..+++ ...+-|..++
T Consensus 276 Q~-v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrI-----------------kC~DLVkKia 337 (1081)
T KOG1538|consen 276 QY-VVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRI-----------------KCKDLVKKIA 337 (1081)
T ss_pred ce-EEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeee-----------------eHHHHHHHHH
Confidence 54 889999999999888876540 00111100 11221111 1112233344
Q ss_pred EecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE----
Q 000992 399 FYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY---- 474 (1196)
Q Consensus 399 fspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~---- 474 (1196)
... +.||+-..+ .|.||.+...... .-++++...+ ...+.|| ++++... .++
T Consensus 338 iYr----nrLAVQLpe-ki~iYel~se~~~----~mhY~v~ekI-------~kkf~cS----LlVVc~~----HiVlCqe 393 (1081)
T KOG1538|consen 338 IYR----NRLAVQLPE-KILIYELYSEDLS----DMHYRVKEKI-------IKKFECS----LLVVCAN----HIVLCQE 393 (1081)
T ss_pred hhh----hhheecccc-eEEEEeccccccc----cchhHHHHHH-------Hhhccce----EEEEEcC----eEEEEcc
Confidence 333 468888777 6778887643211 0001100000 0011111 2222211 111
Q ss_pred --EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 475 --FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 475 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
+--+++.| .++-+ |+.. +.+. -+.+.-.|+..+++.+-+.||.|++.-.
T Consensus 394 krLqClDF~G-------vk~Re----------------W~M~--S~iR----YikV~GGP~gREgL~vGlknGqV~kiF~ 444 (1081)
T KOG1538|consen 394 KRLQCLDFSG-------VKERE----------------WQME--SLIR----YIKVIGGPPGREGLLVGLKNGQVLKIFV 444 (1081)
T ss_pred cceeeecccc-------hhhhh----------------hhHH--HHHH----hhhhhcCCCCcceeEEEecCCcEEEEEe
Confidence 11222222 11111 1110 0000 0112223445689999999999998744
Q ss_pred cccccCCCCCCCCCCCCCC----CCceeEEEecCCCCCccEEEEEcCCCceEe----CCEEee--cCceeEEE---eccC
Q 000992 553 RVGLTGGALTHDDASFPSS----CPWMNVVSVGTNGPLKPLLFGLDDGGRLHV----SGKIVC--NNCSSFSF---YSKS 619 (1196)
Q Consensus 553 ~~~~~~~~~~~~~~~fp~~----c~~~~~~~~~~~~~~~~~~~gL~~~~~L~~----n~~~~~--~~~tSf~~---~~~~ 619 (1196)
+. .||-. ..-++...|+.+ ...+--..+++.+-+ ++.++- .+|.|.+- -++
T Consensus 445 dN------------~~PiLl~~~~tAvrClDINA~---R~kLAvVDD~~~c~v~DI~t~elL~QEpg~nSV~wNT~~E~- 508 (1081)
T KOG1538|consen 445 DN------------LFPILLLKQATAVRCLDINAS---RKKLAVVDDNDTCLVYDIDTKELLFQEPGANSVAWNTQCED- 508 (1081)
T ss_pred cC------------CchhheecccceeEEeeccCC---cceEEEEccCCeEEEEEccCCceEeecCCCceEEeeccccc-
Confidence 32 12221 111122222211 112223344444432 233332 46666653 244
Q ss_pred ccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCC-EEEEEecCCccEEEEEcCCC
Q 000992 620 AGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGA-KVIGVLHGDEAAVILQTNRG 698 (1196)
Q Consensus 620 ~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs-~iV~~~p~~~~~vVLQmpRG 698 (1196)
.|.||+. +.|..=-+. +++ |. .+|- -+|+..-+. +-+. ||
T Consensus 509 ------MlcfT~~-g~L~VR~~~------~P~--------------------h~-qk~~G~VvG~~gsk-~FCL----~~ 549 (1081)
T KOG1538|consen 509 ------MLCFTGG-GYLNVRAST------FPV--------------------HR-QKLQGFVVGYNGSK-IFCL----HV 549 (1081)
T ss_pred ------eEEEecC-CceEEEecc------CCc--------------------ch-hcceEEEEEecCce-EEEE----Ee
Confidence 6677665 444332111 010 11 2221 122222222 2222 12
Q ss_pred ccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHHHHHHhcCCcchHHHHHhhccCCccc
Q 000992 699 NLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNLSYITEFVCAINNENIT 778 (1196)
Q Consensus 699 NLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv~~~~~l~lFls~L~~edvt 778 (1196)
|.-.--|.+++- ..-++|.++.|++|.. |-===+++-| |+-.-..+ ++ +|. -|+.
T Consensus 550 ~~i~~~evp~~~-~m~q~Ieag~f~ea~~------iaclgVv~~D-W~~LA~~A---Le-------------AL~-f~~A 604 (1081)
T KOG1538|consen 550 FSISAVEVPQSA-PMYQYIERGLFKEAYQ------IACLGVTDTD-WRELAMEA---LE-------------ALD-FETA 604 (1081)
T ss_pred eeeecccccccc-cchhhhhccchhhhhc------ccccceecch-HHHHHHHH---Hh-------------hhh-hHHH
Confidence 211112233332 4668899999999763 3222344555 54322111 00 110 1111
Q ss_pred ccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHh---hcCCCCCCchhhhhhhhhhcCCccHHHHHHH
Q 000992 779 ETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALE---EKVPESPSRELCILTTLARSDPPALEEALER 855 (1196)
Q Consensus 779 ~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~---~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~ 855 (1196)
..-|..- .+ -| ... +...|+ ++...+..-++.-+-||.+| +.+|-++
T Consensus 605 RkAY~rV-----Rd-----------------l~---~L~-li~EL~~~k~rge~P~~iLlA~~~Ay~gK----F~EAAkl 654 (1081)
T KOG1538|consen 605 RKAYIRV-----RD-----------------LR---YLE-LISELEERKKRGETPNDLLLADVFAYQGK----FHEAAKL 654 (1081)
T ss_pred HHHHHHH-----hc-----------------cH---HHH-HHHHHHHHHhcCCCchHHHHHHHHHhhhh----HHHHHHH
Confidence 1111100 00 00 001 111111 11011222232222333332 4444444
Q ss_pred HHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccC----hhHHHHHHHHhcCCcchhhHHHHHHhcC
Q 000992 856 IKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYD----LNLAAIVALNSQRDPKEFLPYLQELESM 931 (1196)
Q Consensus 856 i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD----~~lal~vAq~sq~DpkeYlpfL~~L~~l 931 (1196)
.++- . . =+.||+||- |++|..+.. -.+|+|= .+
T Consensus 655 Fk~~---G-------------~-----------------enRAlEmyTDlRMFD~aQE~~~--~g~~~eK-Km------- 691 (1081)
T KOG1538|consen 655 FKRS---G-------------H-----------------ENRALEMYTDLRMFDYAQEFLG--SGDPKEK-KM------- 691 (1081)
T ss_pred HHHc---C-------------c-----------------hhhHHHHHHHHHHHHHHHHHhh--cCChHHH-HH-------
Confidence 2211 0 0 123444542 223322211 1355541 11
Q ss_pred ChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 932 PPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 932 ~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
-.++|++-.--.+...-|.++|+.+|+ .++|++.+.+| +--+.+.++. .=+..-++-++..|.||.....+--|+
T Consensus 692 -L~RKRA~WAr~~kePkaAAEmLiSaGe--~~KAi~i~~d~-gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 692 -LIRKRADWARNIKEPKAAAEMLISAGE--HVKAIEICGDH-GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred -HHHHHHHHhhhcCCcHHHHHHhhcccc--hhhhhhhhhcc-cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 124455555556788899999999998 79999999999 8777777777 333334456678999999999999999
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~ 1090 (1196)
++|.+.|+....+++.+..++|.+|+.+|.+++.- +.+++...|..|.+..+++||-+.|.+ +|.-++|+.++-+.
T Consensus 768 eIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhk-AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 768 EIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHK-AGRQREAVQVLEQL 843 (1081)
T ss_pred HHHHHhccHHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHH-hcchHHHHHHHHHh
Confidence 99999999999999999999999999999997533 346788899999999999999999888 78777777766543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=249.67 Aligned_cols=283 Identities=15% Similarity=0.153 Sum_probs=220.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
-.|..|.|.|+|+.|.+|+..|.+.|||..+--.| +...|+..|.++.||++|.++++|+.+|.|+.|....+.+....
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ 176 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ 176 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh
Confidence 36899999999999999999999999998664455 67789999999999999999999999999999876655544333
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.+ |+..|.+++|||...-|+| .| +|++|+|||...++..+.+.+|.-.+.+++|+|.-
T Consensus 177 ah---------------h~eaIRdlafSpnDskF~t-~S------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 177 AH---------------HAEAIRDLAFSPNDSKFLT-CS------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred Hh---------------hhhhhheeccCCCCceeEE-ec------CCCeEEEEeccCCchhheeccCCCCcceeccCCcc
Confidence 22 2356799999998888884 44 47999999987777777778898899999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
.+|||++.| +.|+|||. .|.-. .++.. +...|.++.|+|+|.+|++++.|. .++++|+....- -+
T Consensus 235 gLiasgskD------nlVKlWDprSg~cl--~tlh~-HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mkE--l~ 300 (464)
T KOG0284|consen 235 GLIASGSKD------NLVKLWDPRSGSCL--ATLHG-HKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMKE--LF 300 (464)
T ss_pred ceeEEccCC------ceeEeecCCCcchh--hhhhh-ccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhHH--HH
Confidence 999999986 37999994 33211 12222 346799999999999999999999 999999874220 12
Q ss_pred EEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCC
Q 000992 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 393 (1196)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~ 393 (1196)
.++.|.++.+++.|||-....+.++..+|++.++.+ +.. -|+ ..+|+ .|...
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v---------------~~~----~p~----~~i~~-----AHd~~ 352 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV---------------GLE----EPL----GEIPP-----AHDGE 352 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEec---------------ccc----ccc----cCCCc-----ccccc
Confidence 233444556899999998877777777777653321 100 011 11222 37889
Q ss_pred EEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 394 VTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 394 V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
||+++|+|=| .+||+++.|.++++|...-
T Consensus 353 iwsl~~hPlG--hil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 353 IWSLAYHPLG--HILATGSNDRTVRFWTRNR 381 (464)
T ss_pred eeeeeccccc--eeEeecCCCcceeeeccCC
Confidence 9999999999 8999999999999998763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=223.31 Aligned_cols=298 Identities=15% Similarity=0.159 Sum_probs=221.2
Q ss_pred EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccC-ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
+...|.+.|.+++..|+ -++|.+++.|.++++|...- |...+.... .|.+|...|..+.-++||+|+
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-----------~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVR-----------RLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceee-----------eeeccceEecceEEccCCceE
Confidence 45557899999999998 57889999999999996332 222222222 344788888999999999998
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
. +++ .|+++|+||..+|+....+.+|..-|.+++||||.+.|.||++|+ +|.+|+.-|... +++.
T Consensus 79 l-S~s------wD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk------Tiklwnt~g~ck--~t~~ 143 (315)
T KOG0279|consen 79 L-SAS------WDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK------TIKLWNTLGVCK--YTIH 143 (315)
T ss_pred E-ecc------ccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc------eeeeeeecccEE--EEEe
Confidence 8 565 479999999999999999999999999999999999999999975 699999755332 3444
Q ss_pred cCC-CCcEEEEEEccC--CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 269 EQI-DSTVELLKWNCM--SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 269 ~~~-~~~V~~laWSpD--g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
... .++|..+.|||+ .-++++++.|+ +|++|+..|.+ +++.+..+......+..||||.++ ..+..+
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk---tvKvWnl~~~~--l~~~~~gh~~~v~t~~vSpDGslc-asGgkd---- 213 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDK---TVKVWNLRNCQ--LRTTFIGHSGYVNTVTVSPDGSLC-ASGGKD---- 213 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCc---eEEEEccCCcc--hhhccccccccEEEEEECCCCCEE-ecCCCC----
Confidence 333 679999999999 78999999999 99999999864 455665555455889999999753 222222
Q ss_pred EEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..+.+|+++.. -+.+++++...|++++|+|+. -.|+.+... .|+||++++.
T Consensus 214 ---------------------g~~~LwdL~~~-----k~lysl~a~~~v~sl~fspnr--ywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 214 ---------------------GEAMLWDLNEG-----KNLYSLEAFDIVNSLCFSPNR--YWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred ---------------------ceEEEEEccCC-----ceeEeccCCCeEeeEEecCCc--eeEeeccCC-ceEEEeccch
Confidence 24556666532 234788899999999999997 677777544 6999999987
Q ss_pred CccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
.+..++.-... .+..+...-...+++|++||.-|..+..+ +-+.+|.+
T Consensus 265 ~~v~~l~~d~~---g~s~~~~~~~clslaws~dG~tLf~g~td--~~irv~qv 312 (315)
T KOG0279|consen 265 AVVEELKLDGI---GPSSKAGDPICLSLAWSADGQTLFAGYTD--NVIRVWQV 312 (315)
T ss_pred hhhhhcccccc---ccccccCCcEEEEEEEcCCCcEEEeeecC--CcEEEEEe
Confidence 77654431110 00011111257889999999988877654 56666665
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-23 Score=240.00 Aligned_cols=440 Identities=13% Similarity=0.045 Sum_probs=291.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++++++|+..|+.++-...+..|++ .++.. |.. ++. ...+.|.-++|.|.|-.|++|+.||.|++
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L--~tgk~---irs----wKa---~He~Pvi~ma~~~~g~LlAtggaD~~v~V 131 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSL--PTGKL---IRS----WKA---IHEAPVITMAFDPTGTLLATGGADGRVKV 131 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEc--ccchH---hHh----Hhh---ccCCCeEEEEEcCCCceEEeccccceEEE
Confidence 7899999999999999999998999999 55533 110 222 11367999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCE--EEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~--LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||...+.+. .+-.|.+.|.++.|.|+-.+ |+++..|++|++|+-.-.. .+++... .|.+.|.+
T Consensus 132 Wdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~---tcl~~~~-----------~H~S~vts 197 (775)
T KOG0319|consen 132 WDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR---TCLHTMI-----------LHKSAVTS 197 (775)
T ss_pred EEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc---hHHHHHH-----------hhhhheee
Confidence 999987654 34446888999999999765 8888999999998732111 1333322 56678899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC-----CCeEEEEecCCC--------
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GANIAAVYDRKS-------- 245 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd-----G~~IAs~s~d~~-------- 245 (1196)
+++++||.-+.+ ++ .|+++-|||..+-++..+.+-.++. .++.+=++ |.+|.+++..+.
T Consensus 198 L~~~~d~~~~ls-~~------RDkvi~vwd~~~~~~l~~lp~ye~~-E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es 269 (775)
T KOG0319|consen 198 LAFSEDSLELLS-VG------RDKVIIVWDLVQYKKLKTLPLYESL-ESVVRLREELGGKGEYIITAGGSGVVQYWDSES 269 (775)
T ss_pred eeeccCCceEEE-ec------cCcEEEEeehhhhhhhheechhhhe-eeEEEechhcCCcceEEEEecCCceEEEEeccc
Confidence 999999998883 44 4789999998665555554322222 33334444 334444433210
Q ss_pred ---------C--------------------CCCCeEEEEeCCC---------------------------------eeEE
Q 000992 246 ---------E--------------------NKCPSIVFYERNG---------------------------------LERS 263 (1196)
Q Consensus 246 ---------~--------------------~~~~~V~~~e~nG---------------------------------l~~~ 263 (1196)
. ...+.+.++|... ...+
T Consensus 270 ~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr 349 (775)
T KOG0319|consen 270 GKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELR 349 (775)
T ss_pred chhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceE
Confidence 0 0012233332110 0001
Q ss_pred EEEec-------cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCce
Q 000992 264 SFDIN-------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 264 ~f~l~-------~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
-++++ ..|+..|.+|.-..+|.+||+++.|. +|+||..+|..- ...+....|.+....+..+.-++.-
T Consensus 350 ~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~---svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 350 LYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK---SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred EEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc---eEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 11111 12345688888566779999999999 999999855321 0001122333333445555444443
Q ss_pred EEEEecCCcEEEEEEEE--------------------------eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 335 LICWTLDGQITTYNFIW--------------------------TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 335 L~~~~~~g~~~~~~~~~--------------------------~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
+..+++|+++..+...- .++|+|.-++....+++.++|.+. ...-..++
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-----~~~l~~vL 501 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-----QLRLLGVL 501 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-----CceEEEEe
Confidence 44444454443322211 111556556666778888888774 22223445
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
+|...||+|.|+|.. +.+|+.|.|+||+||..++..|++++.||. ..|....|..+|+.|.++..
T Consensus 502 sGH~RGvw~V~Fs~~d--q~laT~SgD~TvKIW~is~fSClkT~eGH~------------~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKND--QLLATCSGDKTVKIWSISTFSCLKTFEGHT------------SAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred eCCccceEEEEecccc--ceeEeccCCceEEEEEeccceeeeeecCcc------------ceeEeeeeeeCCcEEEeccC
Confidence 488899999999998 999999999999999999999999988863 46888899999988887655
Q ss_pred CCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeE
Q 000992 468 GPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKI 547 (1196)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v 547 (1196)
+ .-+++|+++.+. .+ .+.-.++.+|=++..++ ..+.++-...||++
T Consensus 568 d--GliKlWnikt~e------------C~-------------------~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 568 D--GLIKLWNIKTNE------------CE-------------------MTLDAHNDRVWALSVSP-LLDMFVTGGGDGRI 613 (775)
T ss_pred C--CcEEEEeccchh------------hh-------------------hhhhhccceeEEEeecC-ccceeEecCCCeEE
Confidence 4 688999985321 11 12234577888887777 66666677889999
Q ss_pred EEEe
Q 000992 548 SEYM 551 (1196)
Q Consensus 548 ~~~~ 551 (1196)
..|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 9884
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-23 Score=242.46 Aligned_cols=432 Identities=13% Similarity=0.097 Sum_probs=301.9
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECC
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD 105 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~ 105 (1196)
++|++.|+.||+...+- |+..|+ .++... +|..- ....+.+++++..||++.|..++..+-+++|+++
T Consensus 25 ~~~s~nG~~L~t~~~d~-Vi~idv--~t~~~~-----l~s~~----~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~ 92 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-VIIIDV--ATGSIA-----LPSGS----NEDEDEITALALTPDEEVLVTASRSQLLRVWSLP 92 (775)
T ss_pred eeECCCCCEEEEecCce-EEEEEc--cCCcee-----cccCC----ccchhhhheeeecCCccEEEEeeccceEEEEEcc
Confidence 89999999999999886 777777 444331 22210 1114689999999999999999999999999999
Q ss_pred CCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 106 GNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 106 ~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
++++ . ....|+++|..++|+|-|.+||+|+.|+.|++|+- ..+...|. |++|.+.|.++.|.|
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi----~~~~~th~-----------fkG~gGvVssl~F~~ 157 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDI----KNGYCTHS-----------FKGHGGVVSSLLFHP 157 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEe----eCCEEEEE-----------ecCCCceEEEEEeCC
Confidence 9865 2 55668999999999999999999999999999763 33444443 457788899999999
Q ss_pred CCce--EEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 184 DGKY--FATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 184 DG~~--lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
+-.+ |+ ++. .|+++|+||..++.. ..+...|...+.+++++|||..+.++++|+ .+.+|+.--
T Consensus 158 ~~~~~lL~-sg~------~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk------vi~vwd~~~- 223 (775)
T KOG0319|consen 158 HWNRWLLA-SGA------TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK------VIIVWDLVQ- 223 (775)
T ss_pred ccchhhee-ecC------CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc------EEEEeehhh-
Confidence 9876 45 343 479999999965654 667788999999999999999999999974 688998611
Q ss_pred eEEEEEec-cCCCCcEEEEEEccC-----CCeeEEEEccCCcceEEEEEecCCEEEEE----------------------
Q 000992 261 ERSSFDIN-EQIDSTVELLKWNCM-----SDLLAAVVRFEEYDSVKICFFSNNHWYLK---------------------- 312 (1196)
Q Consensus 261 ~~~~f~l~-~~~~~~V~~laWSpD-----g~~LAs~~~d~~~~~V~lW~~~n~~wylk---------------------- 312 (1196)
.. .++ .|....+.++.+-++ |+++.+++.++ .+|+|+........+
T Consensus 224 -~~--~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g---~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l 297 (775)
T KOG0319|consen 224 -YK--KLKTLPLYESLESVVRLREELGGKGEYIITAGGSG---VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLL 297 (775)
T ss_pred -hh--hhheechhhheeeEEEechhcCCcceEEEEecCCc---eEEEEecccchhhhhhccCCchhhhcceeccccCceE
Confidence 11 111 222345778888777 77899998888 899999764332111
Q ss_pred -----EEEEEec--------------CCcEE-EEEccCCCceEEEEecCCcEEEE-------------------------
Q 000992 313 -----YEIRYLR--------------RDGIR-FMWHPTKPLQLICWTLDGQITTY------------------------- 347 (1196)
Q Consensus 313 -----q~l~~~~--------------~~~~~-v~Wsp~~~~~L~~~~~~g~~~~~------------------------- 347 (1196)
|++.+-. +.... ..|-|+... |++.+.++.+..+
T Consensus 298 ~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~-laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 298 LVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH-LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce-EEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence 1111100 00111 124444332 4444433332211
Q ss_pred ------------EEEEeee--------------------------cCCCeeEEEEcCCEEEEeeccc--cCCCCCce--e
Q 000992 348 ------------NFIWTTA--------------------------VMENSTALVIDGSKILVTPLSL--SLMPPPMY--L 385 (1196)
Q Consensus 348 ------------~~~~~~~--------------------------~~d~~~v~viDg~~l~lt~l~~--~~vpppm~--~ 385 (1196)
...|... -.....+.|..+.++++|++.. ..-+|+.. .
T Consensus 377 g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 1224221 0012456778888999999976 22222221 1
Q ss_pred e-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEE
Q 000992 386 F-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 386 ~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1196)
+ ...|+..|++|+.+|+. +.+|+++.|.+.+||+++.....+++.|| ...|+++.|+|.++++|+
T Consensus 457 ~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH------------~RGvw~V~Fs~~dq~laT 522 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGH------------TRGVWCVSFSKNDQLLAT 522 (775)
T ss_pred HHHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCC------------ccceEEEEeccccceeEe
Confidence 1 12488899999999999 99999999999999999865455555554 468999999999999999
Q ss_pred EecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeC
Q 000992 465 SHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHG 544 (1196)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 544 (1196)
++.+ .++++|.+.- ..+ ..+.-++...|....+-. ++..++....|
T Consensus 523 ~SgD--~TvKIW~is~------------------------------fSC-lkT~eGH~~aVlra~F~~-~~~qliS~~ad 568 (775)
T KOG0319|consen 523 CSGD--KTVKIWSIST------------------------------FSC-LKTFEGHTSAVLRASFIR-NGKQLISAGAD 568 (775)
T ss_pred ccCC--ceEEEEEecc------------------------------cee-eeeecCccceeEeeeeee-CCcEEEeccCC
Confidence 9887 6899999831 111 122333455566655544 67888889999
Q ss_pred CeEEEEecc
Q 000992 545 GKISEYMSR 553 (1196)
Q Consensus 545 G~v~~~~~~ 553 (1196)
|-+-.|+..
T Consensus 569 GliKlWnik 577 (775)
T KOG0319|consen 569 GLIKLWNIK 577 (775)
T ss_pred CcEEEEecc
Confidence 999999764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-24 Score=257.70 Aligned_cols=317 Identities=15% Similarity=0.179 Sum_probs=225.8
Q ss_pred CCEEEEEEccCCCEEEEEE--CCCcEEEEECCC-------------CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceE
Q 000992 76 DSITAFDYLMEKEALIVGT--SSGLLLLHSVDG-------------NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQI 140 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as--~dG~I~lw~~~~-------------~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV 140 (1196)
..|.+|+.+|||..+|+++ .||.+.+|+.+. +.+-.+-.|.+.|+|+.|||||++||+||.|+-|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v 93 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLV 93 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceE
Confidence 4689999999999999999 999999999853 0112445678999999999999999999999999
Q ss_pred EEEeccCceeeeeecccccCccccc----cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVH----EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs----~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1196)
.+|.+..-........+.. .+.+. -..+.+|+..|..+.|+||+.+|| +.+. |++|-|||..+.++..
T Consensus 94 ~iW~~~~~~~~~~fgs~g~-~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv-S~s~------DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 94 MIWERAEIGSGTVFGSTGG-AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV-SVSL------DNSVIIWNAKTFELLK 165 (942)
T ss_pred EEeeecccCCccccccccc-ccccceeeEEEEEecCCCccceeccCCCccEEE-Eecc------cceEEEEccccceeee
Confidence 9998764111222211111 01110 112448999999999999999999 4553 6899999999999999
Q ss_pred EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe--eEEEEEec---cCCCCcEEEEEEccCCCeeEEEE
Q 000992 217 SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDIN---EQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
++++|.++|-.++|-|-|+++||-++|. +|++|..+.. .|. .+=+ .+.+.....++|||||++||+.-
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDr------tikvwrt~dw~i~k~-It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDR------TLKVWRTSDWGIEKS-ITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCc------eEEEEEcccceeeEe-eccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999999874 6999985432 221 1111 12234588999999999999976
Q ss_pred ccC-CcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEE-EcCCEE
Q 000992 292 RFE-EYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV-IDGSKI 369 (1196)
Q Consensus 292 ~d~-~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v-iDg~~l 369 (1196)
.-. +..+++|-+.++ |.-...+..|......+.|+|-=-. --..+|.....+-.+ .++|+ ..+..|
T Consensus 239 A~n~~~~~~~IieR~t--Wk~~~~LvGH~~p~evvrFnP~lfe---~~~~ng~~~~~~~~y-------~i~AvgSqDrSl 306 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGT--WKVDKDLVGHSAPVEVVRFNPKLFE---RNNKNGTSTQPNCYY-------CIAAVGSQDRSL 306 (942)
T ss_pred hccCCcceeEEEecCC--ceeeeeeecCCCceEEEEeChHHhc---cccccCCccCCCcce-------EEEEEecCCccE
Confidence 543 466999999976 4445667776654488899983110 000123221111001 12222 234467
Q ss_pred EEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.+|... .|.||..-.--+...|.+++||||| -.|.+.|.||+|.+..++.
T Consensus 307 SVW~T~---~~RPl~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 307 SVWNTA---LPRPLFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEecC---CCCchhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcch
Confidence 777663 3667753211257789999999999 8899999999999999975
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=237.17 Aligned_cols=376 Identities=16% Similarity=0.141 Sum_probs=276.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++.+-||..|..+.++|.|+.|+.||+ ....+-.+ +++| .+.|+.+-|+.+.+.|++.+.|+.|++
T Consensus 109 AVt~l~fd~~G~rlaSGskDt~IIvwDl--V~E~Gl~r-------L~GH----kd~iT~~~F~~~~~~lvS~sKDs~iK~ 175 (888)
T KOG0306|consen 109 AVTTLKFDKIGTRLASGSKDTDIIVWDL--VGEEGLFR-------LRGH----KDSITQALFLNGDSFLVSVSKDSMIKF 175 (888)
T ss_pred ceEEEEEcccCceEeecCCCccEEEEEe--ccceeeEE-------eecc----hHHHhHHhccCCCeEEEEeccCceEEE
Confidence 6778889999999999999999999999 65555322 5666 468999999998899999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee----------------------eeecccc
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY----------------------ENPLEEL 158 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~----------------------~~~l~~~ 158 (1196)
||++++.| ++.-.|.+.|+++++.+ +.+++++.|+.+++|...++.-. +..+...
T Consensus 176 WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d 253 (888)
T KOG0306|consen 176 WDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTD 253 (888)
T ss_pred EecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeec
Confidence 99999876 44444689999999998 78888999999999965221100 0000000
Q ss_pred cCcc--------------------------------------------ccc-----------------------------
Q 000992 159 AEGF--------------------------------------------DVH----------------------------- 165 (1196)
Q Consensus 159 ~~~~--------------------------------------------~Vs----------------------------- 165 (1196)
.... .|.
T Consensus 254 ~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~ 333 (888)
T KOG0306|consen 254 FSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGG 333 (888)
T ss_pred CcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCC
Confidence 0000 000
Q ss_pred -c-------------------------------CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc
Q 000992 166 -E-------------------------------PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 166 -~-------------------------------tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~ 213 (1196)
+ -.+.+|...|.++++|.|...++ +++ .+.|+||++.+++
T Consensus 334 ~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga-------~~SikiWn~~t~k 405 (888)
T KOG0306|consen 334 TENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLA-SGA-------GESIKIWNRDTLK 405 (888)
T ss_pred cceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeee-ecC-------CCcEEEEEccCcc
Confidence 0 00115677788889999888777 443 4789999998777
Q ss_pred EEEEec----------------------------------------cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 214 LQASSE----------------------------------------LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 214 l~~~~e----------------------------------------~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
++.+.+ .|+|.+++++-+|||+-.+++|.|+ +|+
T Consensus 406 ciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk------tVk 479 (888)
T KOG0306|consen 406 CIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK------TVK 479 (888)
T ss_pred eeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc------EEE
Confidence 666532 3677889999999999999999974 699
Q ss_pred EEe------CCCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcE
Q 000992 254 FYE------RNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1196)
Q Consensus 254 ~~e------~nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~ 323 (1196)
||+ .+|.+..-..+. ..-++.|.++++||||++||++.-|. ||+++.+.+.+.|+ .+..|.-.+.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlKFfl--sLYGHkLPV~ 554 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLKFFL--SLYGHKLPVL 554 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC---eEEEEEecceeeee--eeccccccee
Confidence 997 234443322222 11245799999999999999999999 99999999987665 4555433337
Q ss_pred EEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecC
Q 000992 324 RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSK 402 (1196)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspd 402 (1196)
++.-|||+.. +..++ -++++++|.+.-+. |++++ .|++.|.+|-|-|.
T Consensus 555 smDIS~DSkl-ivTgS-------------------------ADKnVKiWGLdFGD-----CHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 555 SMDISPDSKL-IVTGS-------------------------ADKNVKIWGLDFGD-----CHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred EEeccCCcCe-EEecc-------------------------CCCceEEeccccch-----hhhhhhcccCceeEEEEccc
Confidence 7888888764 33322 23466777554322 66666 69999999999998
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 403 g~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
. ..+.+++.|+.|+-||-+.-.+.+.+.|| ...|+.++-+|+|.++++++++ .++.+|..
T Consensus 604 ~--~~FFt~gKD~kvKqWDg~kFe~iq~L~~H------------~~ev~cLav~~~G~~vvs~shD--~sIRlwE~ 663 (888)
T KOG0306|consen 604 T--HLFFTCGKDGKVKQWDGEKFEEIQKLDGH------------HSEVWCLAVSPNGSFVVSSSHD--KSIRLWER 663 (888)
T ss_pred c--eeEEEecCcceEEeechhhhhhheeeccc------------hheeeeeEEcCCCCeEEeccCC--ceeEeeec
Confidence 7 88999999999999998766666555554 4579999999999999998887 57778876
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=254.38 Aligned_cols=245 Identities=14% Similarity=0.150 Sum_probs=197.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccc-----ccceeeccc---cc----------------cccccCCCCCC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNE-----RASIKTAIS---AE----------------IEHIDLEPGDS 77 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~-----~~~~~~~~~---~~----------------l~~~~~~~~~~ 77 (1196)
.+.|..|..|+..+.++-.|+.|+.|.+ ..++ ....+..++ ++ +.+| .+.
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl--~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH----~GP 453 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSL--TPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH----SGP 453 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEec--chhhhccccchhhhccccccccchhhhhccccCCceeEEeecC----CCc
Confidence 5677788888888888888888999998 3211 000111111 00 2333 578
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecc
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~ 156 (1196)
|.+..|+||.+.|++.|+|++|+||++++..+- ...+|-.+|+.++|+|-|-+.|++|.|+|.++|+.+- ..+++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~----~~PlR 529 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH----NKPLR 529 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc----CCchh
Confidence 999999999999999999999999999986543 3334688999999999999999999999999987442 22222
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
-|.+|-..|.+++|.|++.|+| .+| .|+++|+||..+|.....+.+|.+.|.+++|||+|++
T Consensus 530 -----------ifaghlsDV~cv~FHPNs~Y~a-TGS------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 530 -----------IFAGHLSDVDCVSFHPNSNYVA-TGS------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -----------hhcccccccceEEECCcccccc-cCC------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 2447778889999999999999 576 4799999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
||||+.+ +.|.+|+. +|.+..++ .+| .+.|.+|.||.||.+||+++.|. +|++||+..
T Consensus 592 LaSg~ed------~~I~iWDl~~~~~v~~l--~~H-t~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~ 650 (707)
T KOG0263|consen 592 LASGDED------GLIKIWDLANGSLVKQL--KGH-TGTIYSLSFSRDGNVLASGGADN---SVRLWDLTK 650 (707)
T ss_pred EeecccC------CcEEEEEcCCCcchhhh--hcc-cCceeEEEEecCCCEEEecCCCC---eEEEEEchh
Confidence 9999986 46999994 56666543 344 78899999999999999999999 999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-20 Score=212.77 Aligned_cols=373 Identities=13% Similarity=0.141 Sum_probs=246.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+-+..+-|-.--+..+-=++.+..|+. .+... + +++.. ..-.|.+-.|.+-.+.+++|+.|+.|++
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWny--etqtm---V-------ksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNY--ETQTM---V-------KSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEec--cccee---e-------eeeee-cccchhhheeeeccceEEEecCCceEEE
Confidence 4444444444444444434666888988 44433 1 11111 1235888899999999999999999999
Q ss_pred EECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+|.+|+ ++.....|++-|+|++-.|..-++.++|.|-+|++|+.+.....+. .|.+|..-|.+|+
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~q--------------tfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQ--------------TFEGHEHYVMQVA 147 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeee--------------EEcCcceEEEEEE
Confidence 999985 5678889999999999999999999999999999997432222211 2557888899999
Q ss_pred Ecc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC--eEEEEecCCCCCCCCeEEEEeC
Q 000992 181 WRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 181 Wsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~--~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
|.| |...|| +++. |||||||+......-.|+++|...|+++.+=|-|. +|.||++| .+|++|+-
T Consensus 148 fnPkD~ntFa-S~sL------DrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD------~tiKvWDy 214 (794)
T KOG0276|consen 148 FNPKDPNTFA-SASL------DRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD------LTIKVWDY 214 (794)
T ss_pred ecCCCcccee-eeec------cccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC------ceEEEeec
Confidence 999 667999 6775 69999999977778889999999999999988774 78888885 57999995
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
....- .-+|.+ |...|..+.|.|.=.++++|++|+ ||+||+.++|. +-.++.+.-...++++=++.+++ +.+
T Consensus 215 Qtk~C-V~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~--lE~tLn~gleRvW~I~~~k~~~~-i~v 286 (794)
T KOG0276|consen 215 QTKSC-VQTLEG-HTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYK--LEKTLNYGLERVWCIAAHKGDGK-IAV 286 (794)
T ss_pred chHHH-HHHhhc-ccccceEEEecCCCcEEEEecCCc---cEEEecCccee--hhhhhhcCCceEEEEeecCCCCe-EEE
Confidence 32110 002333 456799999999999999999999 99999999875 33344442222255555554443 666
Q ss_pred EecCCcEEEE--------------EEEEeeecC----C-Cee---EEEEcCCEEEEeeccccCCCCCceeeeecC-CCCE
Q 000992 338 WTLDGQITTY--------------NFIWTTAVM----E-NST---ALVIDGSKILVTPLSLSLMPPPMYLFSLKF-PTAV 394 (1196)
Q Consensus 338 ~~~~g~~~~~--------------~~~~~~~~~----d-~~~---v~viDg~~l~lt~l~~~~vpppm~~~~l~~-~~~V 394 (1196)
+...|.+.+. .+.|+.... + ..+ -.+-||.. -|++.+.+.. .-..
T Consensus 287 G~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgEr------------L~LsvKeLgs~eiyP 354 (794)
T KOG0276|consen 287 GFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGER------------LPLSVKELGSVEIYP 354 (794)
T ss_pred eccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCcc------------ccchhhhccccccch
Confidence 6666654321 123333200 0 000 01222322 2333333321 1122
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1196)
..++-||+| .+++...||.-.||..-. +-- ...+.-..+.|++|..-.|+-- +++.++
T Consensus 355 q~L~hsPNG---rfV~VcgdGEyiIyTala------~Rn-----------K~fG~~~eFvw~~dsne~avRe--s~~~vk 412 (794)
T KOG0276|consen 355 QTLAHSPNG---RFVVVCGDGEYIIYTALA------LRN-----------KAFGSGLEFVWAADSNEFAVRE--SNGNVK 412 (794)
T ss_pred HHhccCCCC---cEEEEecCccEEEEEeee------hhh-----------cccccceeEEEcCCCCeEEEEe--cCCceE
Confidence 456778998 666777899998887422 110 1234567788999944455432 224555
Q ss_pred EE
Q 000992 475 FR 476 (1196)
Q Consensus 475 ~~ 476 (1196)
++
T Consensus 413 i~ 414 (794)
T KOG0276|consen 413 IF 414 (794)
T ss_pred EE
Confidence 55
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=215.61 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=216.4
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|++| .++|.++.|++|++.|+++|.||.+++||.-| .+...+.--..+|.+.||||.|+.+|.|+-|+...+++.
T Consensus 51 LkGH----~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 51 LKGH----LNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eccc----ccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 6777 47999999999999999999999999999876 455555544679999999999999999999998877643
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
...-. +....| ...+.+|.+.+.+..|-+|++.+- +| +|.+.-+||.++|+....+.+|.+-|
T Consensus 127 s~~d~--------~g~~~v-~r~l~gHtgylScC~f~dD~~ilT--~S------GD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 127 STRDA--------EGNVRV-SRELAGHTGYLSCCRFLDDNHILT--GS------GDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred ccccc--------ccccee-eeeecCccceeEEEEEcCCCceEe--cC------CCceEEEEEcccceEEEEecCCcccE
Confidence 21100 000111 123447888899999999998765 44 57999999999999999999999999
Q ss_pred eEEEEcC-CCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 226 ~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
.+|+++| +++.++||+-|+ ..++|+ |.|.-.+.| ++ ++..|++|+|-|+|.-+|+|+.|+ +.+++|
T Consensus 190 ~slsl~p~~~ntFvSg~cD~------~aklWD~R~~~c~qtF--~g-hesDINsv~ffP~G~afatGSDD~---tcRlyD 257 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDK------SAKLWDVRSGQCVQTF--EG-HESDINSVRFFPSGDAFATGSDDA---TCRLYD 257 (343)
T ss_pred EEEecCCCCCCeEEeccccc------ceeeeeccCcceeEee--cc-cccccceEEEccCCCeeeecCCCc---eeEEEe
Confidence 9999999 999999999875 488999 556444434 33 456799999999999999999999 999999
Q ss_pred ecCCEEEEEEEEE-EecC---Cc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 304 FSNNHWYLKYEIR-YLRR---DG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 304 ~~n~~wylkq~l~-~~~~---~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+...+ ++. |.+. .+ +++.||..|.+ |..+..+.... +|++- -|.++
T Consensus 258 lRaD~-----~~a~ys~~~~~~gitSv~FS~SGRl-Lfagy~d~~c~----vWDtl----------k~e~v--------- 308 (343)
T KOG0286|consen 258 LRADQ-----ELAVYSHDSIICGITSVAFSKSGRL-LFAGYDDFTCN----VWDTL----------KGERV--------- 308 (343)
T ss_pred ecCCc-----EEeeeccCcccCCceeEEEcccccE-EEeeecCCcee----Eeecc----------ccceE---------
Confidence 98643 333 3222 12 88999987764 44444343332 34321 11111
Q ss_pred CCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 379 MPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 379 vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
-.| +|.+.|.++..+||| ..+|+++.|.+++||.
T Consensus 309 -------g~L~GHeNRvScl~~s~DG--~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 -------GVLAGHENRVSCLGVSPDG--MAVATGSWDSTLRIWA 343 (343)
T ss_pred -------EEeeccCCeeEEEEECCCC--cEEEecchhHheeecC
Confidence 112 589999999999999 8999999999999994
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-21 Score=228.67 Aligned_cols=294 Identities=13% Similarity=0.140 Sum_probs=225.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
..+|-+++|+|.-..+.++..+|.|.+||-.-+. ++....|+|+|..+.|.|++-+.++|+.|-+|++|+-. ...
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk----~rr 84 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK----TRR 84 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc----cce
Confidence 3589999999999999999999999999998654 45666789999999999999999999999999999732 122
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
++-+.. +|.+.|.++.|.+.--++. ++| .|.||||||-.++.++.++.+|...|.+-+|.|.
T Consensus 85 clftL~-----------GHlDYVRt~~FHheyPWIl-SAS------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhpt 146 (1202)
T KOG0292|consen 85 CLFTLL-----------GHLDYVRTVFFHHEYPWIL-SAS------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPT 146 (1202)
T ss_pred ehhhhc-----------cccceeEEeeccCCCceEE-Ecc------CCCeEEEEeccCCceEEEEecCceEEEeeccCCc
Confidence 232222 7788999999999999999 566 4789999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEE----------------------------EEeccCCCCcEEEEEEccCCC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSS----------------------------FDINEQIDSTVELLKWNCMSD 285 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~----------------------------f~l~~~~~~~V~~laWSpDg~ 285 (1196)
-.+|+|+|-| .+|++|+-.|++.+. +.|.+ |+..|+.++|.|.=.
T Consensus 147 EDlIVSaSLD------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlp 219 (1202)
T KOG0292|consen 147 EDLIVSASLD------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLP 219 (1202)
T ss_pred cceEEEeccc------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcc
Confidence 9999999997 469999988876432 11222 345699999999999
Q ss_pred eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEc
Q 000992 286 LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1196)
Q Consensus 286 ~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1196)
++++|+.|+ .|+||.++..+.+-+.+.+.|.+.+.++.|||.... +...+.|+
T Consensus 220 liVSG~DDR---qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l-IlSnsEDk----------------------- 272 (1202)
T KOG0292|consen 220 LIVSGADDR---QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL-ILSNSEDK----------------------- 272 (1202)
T ss_pred eEEecCCcc---eeeEEEeccccceeehhhhcccCCcceEEecCccce-eEecCCCc-----------------------
Confidence 999999999 899999987665455666677667788999996543 22222233
Q ss_pred CCEEEEeeccccCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCC
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGT 434 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~ 434 (1196)
.+++|++... .+.+++. -.+.-|.+|-+|.. +++|++ +|+-+.+|.++-.....++.|+
T Consensus 273 --sirVwDm~kR-----t~v~tfrrendRFW~laahP~l--NLfAAg-HDsGm~VFkleRErpa~~v~~n 332 (1202)
T KOG0292|consen 273 --SIRVWDMTKR-----TSVQTFRRENDRFWILAAHPEL--NLFAAG-HDSGMIVFKLERERPAYAVNGN 332 (1202)
T ss_pred --cEEEEecccc-----cceeeeeccCCeEEEEEecCCc--ceeeee-cCCceEEEEEcccCceEEEcCC
Confidence 3444444321 1224443 24568999999998 777766 8888889988743332234443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=220.61 Aligned_cols=231 Identities=11% Similarity=0.129 Sum_probs=174.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-------CCCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-------EKEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-------d~~~La~as 94 (1196)
.+++..|-. +..+|++++|++++.|.- .+.+. ..+..+|.++ . .++++..| ..+.+++.+
T Consensus 16 ~vc~v~w~~-~eei~~~~dDh~~~~~~~--~~~~s-~~~~~~p~df-----~----pt~~h~~~rs~~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 16 KVCCVDWSS-NEEIYFVSDDHQIFKWSD--VSRDS-VEVAKLPDDF-----V----PTDMHLGGRSSGGGKGSDTLLICS 82 (737)
T ss_pred eEEeecccc-cceEEEeccCceEEEeec--ccchh-hhhhhCCccc-----C----CccccccccccCCCCCcceEEEEc
Confidence 455666655 455666666666666554 33333 2344455552 1 22222222 236899999
Q ss_pred CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC----------ceeeeeeccccc-----
Q 000992 95 SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW----------DLLYENPLEELA----- 159 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~----------d~~~~~~l~~~~----- 159 (1196)
.||.+.|.+..+..-..+..|.+.|.|.+|||||.-|.++++||.|++|+|.+ .+++...+.+..
T Consensus 83 ~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~ 162 (737)
T KOG1524|consen 83 NDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF 162 (737)
T ss_pred CCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE
Confidence 99999999987743347788899999999999999999999999999999875 334444444443
Q ss_pred -Cccccc---------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 160 -EGFDVH---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 160 -~~~~Vs---------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.+++++ ..+|++||+-|.+++|++....++ +++ +|..+||||. .|+.+.++.+|+..+.++|
T Consensus 163 c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~-sgG------ED~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 163 CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIA-SGG------EDFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecCCeEEEeecccccceeEEeccCcEEEEeecCcccccee-ecC------CceeEEeecc-cCcccccCChhccceeeee
Confidence 344443 457889999999999999999999 565 6899999999 9999999999999999999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
|.|+ ++.|.+|.. +.+ +..+..++|..|+|||||+.+|.|+..+
T Consensus 235 ~npd-~~~~v~S~n-------t~R-------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-------TAR-------------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eccc-cceeeeeee-------eee-------------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 9999 888888763 333 2234567899999999999999999987
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.9e-22 Score=217.60 Aligned_cols=276 Identities=17% Similarity=0.248 Sum_probs=206.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~~~ 153 (1196)
+.|.++.|+|+++.|++++.+|.|.+|+..++.. .....|...|.++.|+|+++.|++++.++.|.+|+..- ..+..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~- 88 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT- 88 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE-
Confidence 6899999999999999999999999999987643 34445678899999999999999999999999987432 12211
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
+..|...+.++.|+|++++++ +++ .++.+++||..+++.......+.+.+.+++|+|+
T Consensus 89 ---------------~~~~~~~i~~~~~~~~~~~~~-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 146 (289)
T cd00200 89 ---------------LTGHTSYVSSVAFSPDGRILS-SSS------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD 146 (289)
T ss_pred ---------------EeccCCcEEEEEEcCCCCEEE-Eec------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc
Confidence 223455789999999999888 554 3689999999778888888888888999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+++|++++.+ ..|.+|+.+ +.....+. .+...|..++|+|+++.|++++.++ .|++|+...... .
T Consensus 147 ~~~l~~~~~~------~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~~--~ 212 (289)
T cd00200 147 GTFVASSSQD------GTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGKC--L 212 (289)
T ss_pred CCEEEEEcCC------CcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCC---cEEEEECCCCce--e
Confidence 9999998754 469999975 33333332 2345799999999999999999888 899999986432 2
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFP 391 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~ 391 (1196)
..+..+......+.|+|++. .+.....+|.+..++ .. .+..+ ..+ .|.
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~----~~----------~~~~~----------------~~~~~~~ 261 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWD----LR----------TGECV----------------QTLSGHT 261 (289)
T ss_pred cchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEE----cC----------CceeE----------------EEccccC
Confidence 23323322337789999843 234433355554322 11 01111 111 356
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
..|.+++|+|++ +.|++++.||.|++|+
T Consensus 262 ~~i~~~~~~~~~--~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDG--KRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCC--CEEEEecCCCeEEecC
Confidence 789999999998 8999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=246.92 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=210.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe--E-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~--~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
..|.++.|+|||+.|+.++.+++|++|+..+.. . .....|..+|.+++|||||+.|++++.|++|++|+.. ...
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~---~~~ 236 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK---DDG 236 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc---CCC
Confidence 579999999999999999999999999997655 3 3435578999999999999999999999999988641 111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
..+. .+++|.+.|.+++|+|+|++++ +++ .|++|||||..+|++..++++|.+.+.+++|+|
T Consensus 237 ~~~~-----------~l~gH~~~v~~~~f~p~g~~i~-Sgs------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 237 RNLK-----------TLKGHSTYVTSVAFSPDGNLLV-SGS------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred eEEE-----------EecCCCCceEEEEecCCCCEEE-Eec------CCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 2222 2337788899999999999888 565 579999999988999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEE-EEEeccCCCC-cEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERS-SFDINEQIDS-TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~-~f~l~~~~~~-~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+|++|++++.| ..|++|+..+.... ...+...... .+..+.|||+|++|++++.|+ ++++|++...+-
T Consensus 299 d~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~~- 368 (456)
T KOG0266|consen 299 DGNLLVSASYD------GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGKS- 368 (456)
T ss_pred CCCEEEEcCCC------ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCcc-
Confidence 99999999875 46999997544321 0112222222 689999999999999999998 899999987542
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
..++..+.... ...+++.. . +.+..++....+..+.+|++......+.+ ..|
T Consensus 369 -~~~~~~~~~~~-~~~~~~~~-------~---------------~~~~~i~sg~~d~~v~~~~~~s~~~~~~l----~~h 420 (456)
T KOG0266|consen 369 -VGTYTGHSNLV-RCIFSPTL-------S---------------TGGKLIYSGSEDGSVYVWDSSSGGILQRL----EGH 420 (456)
T ss_pred -eeeecccCCcc-eeEecccc-------c---------------CCCCeEEEEeCCceEEEEeCCccchhhhh----cCC
Confidence 23333322221 01111110 0 11122233334446667766532221111 135
Q ss_pred -CCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCC
Q 000992 391 -PTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 423 (1196)
Q Consensus 391 -~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~ 423 (1196)
...|..++|+|.. +.+++.+ .|+.+++|..+
T Consensus 421 ~~~~~~~~~~~~~~--~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 421 SKAAVSDLSSHPTE--NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCceeccccCCCc--CeeeecCcCCCceEEEecCC
Confidence 6788999999999 8999998 78999999864
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=247.25 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=198.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC--------------------------------CeEE-EeeeecCcEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG--------------------------------NATE-VVGRVEGGVRF 121 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~--------------------------------~~~e-~vg~~~~~I~~ 121 (1196)
...+++..|++|+.+||.|..|-.|++|.... +..+ ..| |.++|..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G-H~GPVyg 456 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG-HSGPVYG 456 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec-CCCceee
Confidence 35789999999999999999999999998751 1122 345 6999999
Q ss_pred EEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCC
Q 000992 122 ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 122 ~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~ 200 (1196)
.+||||-++|+++|+|++|++|+. .|..+.. +++|...|+.+.|+|-|.||| +++ .
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~----------------y~GH~~PVwdV~F~P~GyYFa-tas------~ 513 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI----------------YKGHLAPVWDVQFAPRGYYFA-TAS------H 513 (707)
T ss_pred eeecccccceeeccCCcceeeeecccceeEEE----------------ecCCCcceeeEEecCCceEEE-ecC------C
Confidence 999999999999999999999973 3443322 235667889999999999999 566 4
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEE
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~la 279 (1196)
|++-|+|..+.-....++.+|-+-+.+++|+|+++++|+||.| .+|++|+ .+|...+.|+ + |.+.|.+|+
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD------~tVRlWDv~~G~~VRiF~--G-H~~~V~al~ 584 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSD------RTVRLWDVSTGNSVRIFT--G-HKGPVTALA 584 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCC------ceEEEEEcCCCcEEEEec--C-CCCceEEEE
Confidence 7999999998888888999999999999999999999999986 4799999 5677766663 3 467899999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
|||+|.+||+|+.|+ .|+|||+.+..- + ..
T Consensus 585 ~Sp~Gr~LaSg~ed~---~I~iWDl~~~~~-------------------------v--~~-------------------- 614 (707)
T KOG0263|consen 585 FSPCGRYLASGDEDG---LIKIWDLANGSL-------------------------V--KQ-------------------- 614 (707)
T ss_pred EcCCCceEeecccCC---cEEEEEcCCCcc-------------------------h--hh--------------------
Confidence 999999999999999 999999876320 0 00
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
-.+|.+.|.+|+||.|| ++||+++.|++|++||+..
T Consensus 615 ---------------------------l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 615 ---------------------------LKGHTGTIYSLSFSRDG--NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---------------------------hhcccCceeEEEEecCC--CEEEecCCCCeEEEEEchh
Confidence 02356788999999999 9999999999999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=254.22 Aligned_cols=292 Identities=11% Similarity=0.072 Sum_probs=207.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC----e-----EEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEe
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN----A-----TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~----~-----~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~ 144 (1196)
.+.|.+++|+|+|+.||+|+.||+|+||+..+. . ..... +...|.+++|+| ++.+||+++.||+|++|+
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 568999999999999999999999999997531 1 11122 246799999987 488999999999999986
Q ss_pred cc-CceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 145 ~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
.. +..+. .+.+|.+.|.+++|+| ||.+|+ +++ .|++|+|||..+|....+...+
T Consensus 562 ~~~~~~~~----------------~~~~H~~~V~~l~~~p~~~~~L~-Sgs------~Dg~v~iWd~~~~~~~~~~~~~- 617 (793)
T PLN00181 562 VARSQLVT----------------EMKEHEKRVWSIDYSSADPTLLA-SGS------DDGSVKLWSINQGVSIGTIKTK- 617 (793)
T ss_pred CCCCeEEE----------------EecCCCCCEEEEEEcCCCCCEEE-EEc------CCCEEEEEECCCCcEEEEEecC-
Confidence 32 22221 2336677899999996 899999 565 4699999999889888877644
Q ss_pred CceeEEEE-cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEE
Q 000992 223 FMGAVLEW-MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKI 301 (1196)
Q Consensus 223 ~~v~slaw-sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~l 301 (1196)
..+.+++| +|+|++||+|+.| ..|.+|+..........+.. +...|..++|+ |+..|++++.|+ +|+|
T Consensus 618 ~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~---~iki 686 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDN---TLKL 686 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCC---EEEE
Confidence 56789999 5679999999986 46999995322211122333 35679999997 788999999999 9999
Q ss_pred EEecCC----EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecccc
Q 000992 302 CFFSNN----HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1196)
Q Consensus 302 W~~~n~----~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1196)
|++... .|.....+..+......+.|+|++.. |++++.+|.+.+ |+... +..+..+.+...
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~-lasgs~D~~v~i----w~~~~----------~~~~~s~~~~~~ 751 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGY-IATGSETNEVFV----YHKAF----------PMPVLSYKFKTI 751 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCE-EEEEeCCCEEEE----EECCC----------CCceEEEecccC
Confidence 998632 23233444444333477899998764 777777887654 33220 001111111111
Q ss_pred CCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 378 LMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 378 ~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
. +...... .+...|.+|+|+|++ +.|++++.||+|++|+.
T Consensus 752 ~---~~~~~~~~~~~~~V~~v~ws~~~--~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 D---PVSGLEVDDASQFISSVCWRGQS--STLVAANSTGNIKILEM 792 (793)
T ss_pred C---cccccccCCCCcEEEEEEEcCCC--CeEEEecCCCcEEEEec
Confidence 1 1111111 245679999999999 89999999999999985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=218.17 Aligned_cols=333 Identities=14% Similarity=0.155 Sum_probs=241.4
Q ss_pred EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeeee---cc-ccc-CccccccCccccCCCCeEEEEEcc
Q 000992 110 EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENP---LE-ELA-EGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~~---l~-~~~-~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
.+.+ |+..|.+.+|+|--+ +||++++|-+.++|+..++.-.... ++ ... -.+.+ +....|++++|+.
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~------~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSV------PSNKDVTSLDWNN 245 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccC------CccCCcceEEecC
Confidence 3445 788999999999877 9999999999999876552211110 00 000 01111 2345789999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1196)
||.+|| .++ .++.+|||+. +|.+.+++..|.++|.+|.|+-.|++|++++.|+ ++++|+. .|...
T Consensus 246 ~G~~La-tG~------~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~------ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 246 DGTLLA-TGS------EDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG------TTILWDAHTGTVK 311 (524)
T ss_pred CCCeEE-Eee------cCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCc------cEEEEeccCceEE
Confidence 999999 676 4689999999 9999999999999999999999999999999975 5888984 67777
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCC
Q 000992 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.+|.+.. ..-.+|.|-.+.+ .|+.+.|+ .|.++.+..-.. +.++..|++.+..+.|+|.+.+ |...+
T Consensus 312 q~f~~~s---~~~lDVdW~~~~~-F~ts~td~---~i~V~kv~~~~P--~~t~~GH~g~V~alk~n~tg~L-LaS~S--- 378 (524)
T KOG0273|consen 312 QQFEFHS---APALDVDWQSNDE-FATSSTDG---CIHVCKVGEDRP--VKTFIGHHGEVNALKWNPTGSL-LASCS--- 378 (524)
T ss_pred Eeeeecc---CCccceEEecCce-EeecCCCc---eEEEEEecCCCc--ceeeecccCceEEEEECCCCce-EEEec---
Confidence 7777652 2235788877765 56666777 799988875332 3455566666688999998864 44433
Q ss_pred cEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCC-------CEEEEEECC
Q 000992 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSK-------NCLAAILSD 414 (1196)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~-------~~lAs~~~d 414 (1196)
|+.++++|.... -+|.+.+ .|...|..+.|||+|.. .++|+++.|
T Consensus 379 ----------------------dD~TlkiWs~~~-----~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d 431 (524)
T KOG0273|consen 379 ----------------------DDGTLKIWSMGQ-----SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD 431 (524)
T ss_pred ----------------------CCCeeEeeecCC-----CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC
Confidence 334666665433 3455555 48888999999999853 579999999
Q ss_pred CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhh
Q 000992 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIE 494 (1196)
Q Consensus 415 g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (1196)
++|++|+...+.++.++.+ |...|..++|+|+|+++|+++-+ ..+.+|....
T Consensus 432 stV~lwdv~~gv~i~~f~k------------H~~pVysvafS~~g~ylAsGs~d--g~V~iws~~~-------------- 483 (524)
T KOG0273|consen 432 STVKLWDVESGVPIHTLMK------------HQEPVYSVAFSPNGRYLASGSLD--GCVHIWSTKT-------------- 483 (524)
T ss_pred CeEEEEEccCCceeEeecc------------CCCceEEEEecCCCcEEEecCCC--CeeEeccccc--------------
Confidence 9999999988777655543 34579999999999999998765 5677776531
Q ss_pred hhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEE
Q 000992 495 LACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1196)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~ 550 (1196)
+.. .....-.+-|..+++|. .++.+.+.-.||.|...
T Consensus 484 ---------------~~l---~~s~~~~~~Ifel~Wn~-~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 484 ---------------GKL---VKSYQGTGGIFELCWNA-AGDKLGACASDGSVCVL 520 (524)
T ss_pred ---------------hhe---eEeecCCCeEEEEEEcC-CCCEEEEEecCCCceEE
Confidence 001 12233355678899988 77888887788777654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=235.59 Aligned_cols=293 Identities=15% Similarity=0.156 Sum_probs=212.1
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
..+++...|.++.|||||+.||+++.++.+++|.... .....++.. .+|...|..++|+|||++++
T Consensus 154 ~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~--~~~~~~~~l-----------~~h~~~v~~~~fs~d~~~l~- 219 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEG--IKSNLLREL-----------SGHTRGVSDVAFSPDGSYLL- 219 (456)
T ss_pred ecccccCceEEEEEcCCCCeEEEccCCCcEEEeeccc--ccchhhccc-----------cccccceeeeEECCCCcEEE-
Confidence 3455578899999999999999999999999886411 110011111 25778899999999999999
Q ss_pred eeccccccCCCCEEEEEEC-CCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec
Q 000992 191 LSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN 268 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~-~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~ 268 (1196)
.++ .|.+|||||. ..|....++.+|...+.+++|+|+|++|+||+.|. +|++|+.. |...+. |.
T Consensus 220 s~s------~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~------tvriWd~~~~~~~~~--l~ 285 (456)
T KOG0266|consen 220 SGS------DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDG------TVRIWDVRTGECVRK--LK 285 (456)
T ss_pred Eec------CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCC------cEEEEeccCCeEEEe--ee
Confidence 565 4799999999 66789999999999999999999999999999975 69999965 444432 33
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c-EEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
. +...|..++|++||.+|++++.|+ .|++||+.+++-.+..++...... . ..+.|+|++.. +.+.+
T Consensus 286 ~-hs~~is~~~f~~d~~~l~s~s~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~------- 353 (456)
T KOG0266|consen 286 G-HSDGISGLAFSPDGNLLVSASYDG---TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSAS------- 353 (456)
T ss_pred c-cCCceEEEEECCCCCEEEEcCCCc---cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEec-------
Confidence 3 356899999999999999999999 999999998752112344433333 3 77888887764 33333
Q ss_pred EEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCC---CEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT---AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~---~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+++++++|.++...++-... .|.. .+.+..+++.+ ..+.+++.|+.|.+|+..
T Consensus 354 ------------------~d~~~~~w~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 354 ------------------LDRTLKLWDLRSGKSVGTYT----GHSNLVRCIFSPTLSTGG--KLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred ------------------CCCeEEEEEccCCcceeeec----ccCCcceeEecccccCCC--CeEEEEeCCceEEEEeCC
Confidence 33455555554322211110 1222 34455667888 899999999999999998
Q ss_pred CCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 424 APDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 424 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+......+.|+. ...+..++|.+...++++.+......+.+|..
T Consensus 410 s~~~~~~l~~h~-----------~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 410 SGGILQRLEGHS-----------KAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred ccchhhhhcCCC-----------CCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 765555555542 34678889999999999887544466777754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-20 Score=208.33 Aligned_cols=273 Identities=15% Similarity=0.167 Sum_probs=208.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|+++++.|++++.++.+..|+. ..+..... +..+ ...+..+.|+|+++.|++++.+|.|.+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~--~~~~~~~~-------~~~~----~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDL--ETGELLRT-------LKGH----TGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEe--eCCCcEEE-------EecC----CcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 7899999999999999999999999998 43332111 2222 346789999999999999999999999
Q ss_pred EECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|+..++ .+.....|...|.+++|+|+++++++++.++.|.+|+.. ....... ..|...+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----------------~~~~~~i~~~ 141 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL----------------RGHTDWVNSV 141 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe----------------ccCCCcEEEE
Confidence 999874 334444567789999999999999988889999998743 3322222 1345678999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
+|+|++++++ +++ .++.|++||..+++.......+.+.+.+++|+|+|+.|++++.+ ..|.+|+..
T Consensus 142 ~~~~~~~~l~-~~~------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~ 208 (289)
T cd00200 142 AFSPDGTFVA-SSS------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD------GTIKLWDLST 208 (289)
T ss_pred EEcCcCCEEE-EEc------CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC------CcEEEEECCC
Confidence 9999999998 554 36899999997888888888888889999999999999888874 469999965
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
+.....+ . .+...|..++|+|++.++++++.++ .|++|+..+.. ....+..+......+.|+|++.. |.++
T Consensus 209 ~~~~~~~--~-~~~~~i~~~~~~~~~~~~~~~~~~~---~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~-l~~~ 279 (289)
T cd00200 209 GKCLGTL--R-GHENGVNSVAFSPDGYLLASGSEDG---TIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKR-LASG 279 (289)
T ss_pred Cceecch--h-hcCCceEEEEEcCCCcEEEEEcCCC---cEEEEEcCCce--eEEEccccCCcEEEEEECCCCCE-EEEe
Confidence 3322222 1 2345799999999999999988777 89999998643 23344433333488999998764 6666
Q ss_pred ecCCcEE
Q 000992 339 TLDGQIT 345 (1196)
Q Consensus 339 ~~~g~~~ 345 (1196)
+.+|.+.
T Consensus 280 ~~d~~i~ 286 (289)
T cd00200 280 SADGTIR 286 (289)
T ss_pred cCCCeEE
Confidence 6677654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-21 Score=202.37 Aligned_cols=284 Identities=11% Similarity=0.048 Sum_probs=210.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
++..|-+.|.++-||||.+.|+++|.||.+++|+. .-+...-+++. ...|...+|+|.|+++|
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----------------s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----------------SSWVMTCAYSPSGNFVA 113 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC----------------ceeEEEEEECCCCCeEE
Confidence 34446889999999999999999999999999862 11222222322 24679999999999999
Q ss_pred EeeccccccCCCCEEEEEECC----CC--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000992 190 TLSEFCNSSKLHKRLKVWERD----SG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~----~G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1196)
+++. |+..-||+.. +| ...+.+.+|.+.+.+..|-+|+.+|. +|.| .+..+|+. .|++.
T Consensus 114 -cGGL------dN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT-~SGD------~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 114 -CGGL------DNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILT-GSGD------MTCALWDIETGQQT 179 (343)
T ss_pred -ecCc------CceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEe-cCCC------ceEEEEEcccceEE
Confidence 8875 4667778764 23 23445778999999999999877654 4444 46999994 57777
Q ss_pred EEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecC
Q 000992 263 SSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
..|. .|.+.|.+|+.+| |++..++++-|+ +.+|||+... +.+|.+..|..+...+.|+|+|.. +..++.|
T Consensus 180 ~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~---~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~a-fatGSDD 250 (343)
T KOG0286|consen 180 QVFH---GHTGDVMSLSLSPSDGNTFVSGGCDK---SAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGDA-FATGSDD 250 (343)
T ss_pred EEec---CCcccEEEEecCCCCCCeEEeccccc---ceeeeeccCc--ceeEeecccccccceEEEccCCCe-eeecCCC
Confidence 6653 3467899999999 999999999999 9999999876 358888888777789999999864 6666666
Q ss_pred CcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+....++..- +..+.+.. +++ ...+|++|+||..| ++|.++..|.++.+||
T Consensus 251 ~tcRlyDlRa--------------D~~~a~ys------~~~-------~~~gitSv~FS~SG--RlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 251 ATCRLYDLRA--------------DQELAVYS------HDS-------IICGITSVAFSKSG--RLLFAGYDDFTCNVWD 301 (343)
T ss_pred ceeEEEeecC--------------CcEEeeec------cCc-------ccCCceeEEEcccc--cEEEeeecCCceeEee
Confidence 6655554431 11121111 000 13468999999999 8999999999999999
Q ss_pred CCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 422 LPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 422 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
.--.+....+. +|.++|..+.-+|||.-|++++.+ +.+.+|
T Consensus 302 tlk~e~vg~L~------------GHeNRvScl~~s~DG~av~TgSWD--s~lriW 342 (343)
T KOG0286|consen 302 TLKGERVGVLA------------GHENRVSCLGVSPDGMAVATGSWD--STLRIW 342 (343)
T ss_pred ccccceEEEee------------ccCCeeEEEEECCCCcEEEecchh--Hheeec
Confidence 74333332333 456799999999999999999887 566665
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=216.99 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=200.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeE---E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NAT---E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~---e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.+.|+-+.||++|++||+||.|.+.++|.... +.+ . ++| |..+|..+.||||.++|++++.|..+.+| |.
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdryLlaCg~~e~~~lw----Dv 298 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRYLLACGFDEVLSLW----DV 298 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCeEEecCchHheeec----cC
Confidence 57899999999999999999999999998743 232 2 555 57899999999999999999999888765 44
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVL 228 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~sl 228 (1196)
-++...+.-.+ ++...+.+.+|-|||..|+ +|+ .||+|..||. +|......+++. .-++++
T Consensus 299 ~tgd~~~~y~~----------~~~~S~~sc~W~pDg~~~V-~Gs------~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 299 DTGDLRHLYPS----------GLGFSVSSCAWCPDGFRFV-TGS------PDRTIIMWDL-DGNILGNWEGVRDPKVHDL 360 (519)
T ss_pred Ccchhhhhccc----------CcCCCcceeEEccCCceeE-ecC------CCCcEEEecC-CcchhhcccccccceeEEE
Confidence 44443332221 2235678999999999999 676 4799999999 999988888765 458999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+.+|||+.+.+...|+ .|+++++....... +- ..+..|.+++.|.||++..+-..+. .|++||...
T Consensus 361 ait~Dgk~vl~v~~d~------~i~l~~~e~~~dr~--li-se~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e-- 426 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDK------KIRLYNREARVDRG--LI-SEEQPITSFSISKDGKLALVNLQDQ---EIHLWDLEE-- 426 (519)
T ss_pred EEcCCCcEEEEEeccc------ceeeechhhhhhhc--cc-cccCceeEEEEcCCCcEEEEEcccC---eeEEeecch--
Confidence 9999999887777654 58888764322110 11 1235799999999999999999988 899999984
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
|.+.+....+.. +...+....+.+ ++.-++....+.+|++|...... |. ..+
T Consensus 427 ~~lv~kY~Ghkq----------~~fiIrSCFgg~-------------~~~fiaSGSED~kvyIWhr~sgk---ll--~~L 478 (519)
T KOG0293|consen 427 NKLVRKYFGHKQ----------GHFIIRSCFGGG-------------NDKFIASGSEDSKVYIWHRISGK---LL--AVL 478 (519)
T ss_pred hhHHHHhhcccc----------cceEEEeccCCC-------------CcceEEecCCCceEEEEEccCCc---ee--Eee
Confidence 322222222111 111111111110 11112222344566666654322 12 223
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+|...|++|+|+|... .++|+++.||||+||....
T Consensus 479 sGHs~~vNcVswNP~~p-~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 SGHSKTVNCVSWNPADP-EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCcceeeEEecCCCCH-HHhhccCCCCeEEEecCCc
Confidence 4788999999999875 8899999999999998763
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=235.62 Aligned_cols=305 Identities=16% Similarity=0.167 Sum_probs=210.5
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEe--CCceEEEEeccCceee-eeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s--~d~tV~l~~~~~d~~~-~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
.++|++..|.++..+|||..+|+++ .|+.+++|+.+ ++. +.......-.+++ .|...|+..+.++.|||||+|
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~--~vl~~~~~~~~~l~k~l--~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQD--PVLDEKEEKNENLPKHL--CTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccc--cccchhhhhhcccchhh--eeeccccCceeEEEECCCCCe
Confidence 5677777899999999999999999 89999999754 221 1110000001111 223367889999999999999
Q ss_pred EEEeeccccccCCCCEEEEEECCC-------C-----------cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDS-------G-----------TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~-------G-----------~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
|| +|+ +|+.|.||.+.+ | +...++.+|++.|..++|+|++.++||++-|
T Consensus 84 lA-sGS------DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D------ 150 (942)
T KOG0973|consen 84 LA-SGS------DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD------ 150 (942)
T ss_pred Ee-ecc------CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc------
Confidence 99 776 579999999952 1 2556778899999999999999999999997
Q ss_pred CeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC----Cc--
Q 000992 250 PSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR----DG-- 322 (1196)
Q Consensus 250 ~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~----~~-- 322 (1196)
..|.+|+.. ..+.. ++++ |...|..+.|.|-|+++|+.+.|+ +|++|.+.+ |-+-+.+.-+-. ..
T Consensus 151 nsViiwn~~tF~~~~--vl~~-H~s~VKGvs~DP~Gky~ASqsdDr---tikvwrt~d--w~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 151 NSVIIWNAKTFELLK--VLRG-HQSLVKGVSWDPIGKYFASQSDDR---TLKVWRTSD--WGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred ceEEEEccccceeee--eeec-ccccccceEECCccCeeeeecCCc---eEEEEEccc--ceeeEeeccchhhCCCccee
Confidence 469999832 21111 2333 467899999999999999999999 999999877 545555542211 11
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecC
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK 402 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspd 402 (1196)
..+.|||||.. |++... + -.+..+++.++-++ |.+ ...-++|.+++..|+|+|.
T Consensus 223 ~RlSWSPDG~~-las~nA---~----------n~~~~~~~IieR~t--------Wk~----~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 223 LRLSWSPDGHH-LASPNA---V----------NGGKSTIAIIERGT--------WKV----DKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred eecccCCCcCe-ecchhh---c----------cCCcceeEEEecCC--------cee----eeeeecCCCceEEEEeChH
Confidence 56899999975 433321 0 01122344444332 111 0012478999999999984
Q ss_pred --------CCC---C----EEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 403 --------SSK---N----CLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 403 --------g~~---~----~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
|.. + .+|+|+.|++|.+|....+..+ +.-++ ....+|..++|+|||..|.+++.
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl--~vi~~---------lf~~SI~DmsWspdG~~LfacS~ 345 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL--FVIHN---------LFNKSIVDMSWSPDGFSLFACSL 345 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch--hhhhh---------hhcCceeeeeEcCCCCeEEEEec
Confidence 110 2 7899999999999998654333 11111 12247999999999988777777
Q ss_pred CCCCceEEEEee
Q 000992 468 GPRHSNYFRGAT 479 (1196)
Q Consensus 468 ~~~~~~~~~~~~ 479 (1196)
+ .++.++.+.
T Consensus 346 D--GtV~~i~Fe 355 (942)
T KOG0973|consen 346 D--GTVALIHFE 355 (942)
T ss_pred C--CeEEEEEcc
Confidence 6 577777664
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=210.28 Aligned_cols=279 Identities=14% Similarity=0.126 Sum_probs=218.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|+.+-|+|+--..+++++|++|++||..+++++ .+.+|.++|..++|+.-|++||+++.|-.+++|+.+ ... .+
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~--~~~-~c 185 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD--TFF-RC 185 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH--HHH-HH
Confidence 57999999999999999999999999999999886 444568889999999999999999999889888632 111 11
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
+... ++|+..|.++.|.|-|.+++ +++ .|++|+.|+..+|.+.+++.+|..++..++-+-||
T Consensus 186 ~ks~-----------~gh~h~vS~V~f~P~gd~il-S~s------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 186 IKSL-----------IGHEHGVSSVFFLPLGDHIL-SCS------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred HHHh-----------cCcccceeeEEEEecCCeee-ecc------cccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 1111 16777899999999999999 565 46999999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccC---------------CCeeEEEEccCCcce
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCM---------------SDLLAAVVRFEEYDS 298 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpD---------------g~~LAs~~~d~~~~~ 298 (1196)
.+|||++.+ ++|++|-.+... .. .++. ++-.|..++|-|. |++|.+++.|+ +
T Consensus 248 ti~As~s~d------qtl~vW~~~t~~~k~--~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk---t 315 (406)
T KOG0295|consen 248 TIIASCSND------QTLRVWVVATKQCKA--ELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK---T 315 (406)
T ss_pred eEEEecCCC------ceEEEEEeccchhhh--hhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccc---e
Confidence 999999986 569999743210 11 2333 3456889999875 26999999999 9
Q ss_pred EEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
|++|+++..... -+|..|.+.+..++|||-|.+ | +...|+++|++|+++..
T Consensus 316 Ik~wdv~tg~cL--~tL~ghdnwVr~~af~p~Gky-i-------------------------~ScaDDktlrvwdl~~~- 366 (406)
T KOG0295|consen 316 IKIWDVSTGMCL--FTLVGHDNWVRGVAFSPGGKY-I-------------------------LSCADDKTLRVWDLKNL- 366 (406)
T ss_pred EEEEeccCCeEE--EEEecccceeeeeEEcCCCeE-E-------------------------EEEecCCcEEEEEeccc-
Confidence 999999987643 366666555577788886654 2 22335666777766532
Q ss_pred CCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 379 MPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 379 vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
.|.+++. |+.-|++++|..+. .++.+|+-|.++++|..
T Consensus 367 ----~cmk~~~ah~hfvt~lDfh~~~--p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 367 ----QCMKTLEAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ----eeeeccCCCcceeEEEecCCCC--ceEEeccccceeeeeec
Confidence 3445553 67779999999998 79999999999999974
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-20 Score=238.45 Aligned_cols=283 Identities=9% Similarity=0.063 Sum_probs=201.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I~ 100 (1196)
.+.+++|+++++.+++++.|+.|..|+.+....... .+. .+ ... +.....|.+++|+| ++..|++++.||+|+
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-~~~-~~--~~~--~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-DIH-YP--VVE--LASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-ccc-cc--eEE--ecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 688999999999999999999999999731001110 000 00 000 11135789999987 478999999999999
Q ss_pred EEECCCCeE-EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeE
Q 000992 101 LHSVDGNAT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 101 lw~~~~~~~-e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
+||..+++. .....|.+.|++++|+| ||.+||+++.|++|++|+. .+..+.... +...+.
T Consensus 559 lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-----------------~~~~v~ 621 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-----------------TKANIC 621 (793)
T ss_pred EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-----------------cCCCeE
Confidence 999987654 45555789999999997 8999999999999999973 233332221 113568
Q ss_pred EEEE-ccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isW-spDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
++.| +++|.+|| +++ .|++|++||..++. ...+..+|.+.+..++|. +|..|++++.| ..|++|
T Consensus 622 ~v~~~~~~g~~la-tgs------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D------~~ikiW 687 (793)
T PLN00181 622 CVQFPSESGRSLA-FGS------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD------NTLKLW 687 (793)
T ss_pred EEEEeCCCCCEEE-EEe------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC------CEEEEE
Confidence 9999 56799999 676 46899999986665 456677899999999997 78899999886 469999
Q ss_pred eCCC-------eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE---------EEEec
Q 000992 256 ERNG-------LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE---------IRYLR 319 (1196)
Q Consensus 256 e~nG-------l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~---------l~~~~ 319 (1196)
+... .... .+.+ +...+..++|+|+|.+||+++.|+ +|.+|+........... +....
T Consensus 688 d~~~~~~~~~~~~l~--~~~g-h~~~i~~v~~s~~~~~lasgs~D~---~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 688 DLSMSISGINETPLH--SFMG-HTNVKNFVGLSVSDGYIATGSETN---EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred eCCCCccccCCcceE--EEcC-CCCCeeEEEEcCCCCEEEEEeCCC---EEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9641 1111 2233 356788999999999999999999 99999976432110000 00111
Q ss_pred -CC-cEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 320 -RD-GIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 320 -~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
.. ...+.|+|++.. |..++.+|.+.+++
T Consensus 762 ~~~~V~~v~ws~~~~~-lva~~~dG~I~i~~ 791 (793)
T PLN00181 762 ASQFISSVCWRGQSST-LVAANSTGNIKILE 791 (793)
T ss_pred CCcEEEEEEEcCCCCe-EEEecCCCcEEEEe
Confidence 11 267888887764 66666777776543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-18 Score=199.40 Aligned_cols=347 Identities=11% Similarity=0.082 Sum_probs=246.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+-+++|-|-.--|.+.--++.|-.||. .++.. +. .+.+| .+.|.+|+|+|++..+++|+.|-.|++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDY--RM~tl---i~----rFdeH----dGpVRgv~FH~~qplFVSGGDDykIkV 77 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDY--RMGTL---ID----RFDEH----DGPVRGVDFHPTQPLFVSGGDDYKIKV 77 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehh--hhhhH---Hh----hhhcc----CCccceeeecCCCCeEEecCCccEEEE
Confidence 5677888887777777766888999999 66654 11 13444 478999999999999999999999999
Q ss_pred EECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+.++- ..| |.+.|..+.|.|.-=++.++|.|+||++|+ |..-+.+. ... ||...|.+.
T Consensus 78 WnYk~rrclftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWN--wqsr~~ia--vlt-----------GHnHYVMcA 141 (1202)
T KOG0292|consen 78 WNYKTRRCLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWN--WQSRKCIA--VLT-----------GHNHYVMCA 141 (1202)
T ss_pred Eecccceehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEe--ccCCceEE--EEe-----------cCceEEEee
Confidence 999998774 566 588999999999999999999999999986 44333222 222 677889999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCc------------------------------EEEEeccCCCceeEEE
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT------------------------------LQASSELKAFMGAVLE 229 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~------------------------------l~~~~e~~~~~v~sla 229 (1196)
.|.|--..++ ++|. |.+|||||. .|- .-..+|+|+..|+-+|
T Consensus 142 qFhptEDlIV-SaSL------DQTVRVWDi-sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 142 QFHPTEDLIV-SASL------DQTVRVWDI-SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred ccCCccceEE-Eecc------cceEEEEee-cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 9999888898 6775 589999997 430 1235678998899999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+|.--+|+||++| ..|++|.-|-..--|. +.++ |.+.|.++-|.|.-+++.+.++|+ +|++||+....
T Consensus 214 fhpTlpliVSG~DD------RqVKlWrmnetKaWEvDtcrg-H~nnVssvlfhp~q~lIlSnsEDk---sirVwDm~kRt 283 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADD------RQVKLWRMNETKAWEVDTCRG-HYNNVSSVLFHPHQDLILSNSEDK---SIRVWDMTKRT 283 (1202)
T ss_pred ecCCcceEEecCCc------ceeeEEEeccccceeehhhhc-ccCCcceEEecCccceeEecCCCc---cEEEEeccccc
Confidence 99999999999987 4699998775332222 2334 457899999999999999999999 99999998643
Q ss_pred EEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEee---ecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 309 WYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTT---AVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 309 wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~---~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
- -|.++- .+++ +.++=||..++ ++.+..+| +.++.....- +.++.++.. +.++.|...+|+..--.+-|.
T Consensus 284 ~--v~tfrr-endRFW~laahP~lNL-fAAgHDsG-m~VFkleRErpa~~v~~n~LfY-vkd~~i~~~d~~t~~d~~v~~ 357 (1202)
T KOG0292|consen 284 S--VQTFRR-ENDRFWILAAHPELNL-FAAGHDSG-MIVFKLERERPAYAVNGNGLFY-VKDRFIRSYDLRTQKDTAVAS 357 (1202)
T ss_pred c--eeeeec-cCCeEEEEEecCCcce-eeeecCCc-eEEEEEcccCceEEEcCCEEEE-EccceEEeeeccccccceeEe
Confidence 1 122221 2344 88889998765 55555444 4443332111 133433333 346777777776532222232
Q ss_pred eeeec-CCCCEEEEEEecCCCCCEE--EEEECCCcEEEEeCC
Q 000992 385 LFSLK-FPTAVTEMAFYSKSSKNCL--AAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l~-~~~~V~~Vafspdg~~~~l--As~~~dg~v~lw~~~ 423 (1196)
.+..+ .-.++.+++|+|.- +.+ .+-..+|+..|+...
T Consensus 358 lr~~g~~~~~~~smsYNpae--~~vlics~~~n~~y~L~~ip 397 (1202)
T KOG0292|consen 358 LRRPGTLWQPPRSLSYNPAE--NAVLICSNLDNGEYELVQIP 397 (1202)
T ss_pred ccCCCcccCCcceeeecccc--CeEEEEeccCCCeEEEEEec
Confidence 22221 23567899999986 332 222356777777765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=209.60 Aligned_cols=309 Identities=17% Similarity=0.154 Sum_probs=224.8
Q ss_pred cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 98 LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 98 ~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
+-..|=+.-.... ..| |...|+.+-|-|+--++|++|.|++|++|+.. ++.... -.++|.+.+
T Consensus 90 ~~~~wipRp~l~~~l~g-~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~----tg~~e~-----------~LrGHt~sv 153 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAG-HRSSVTRVIFHPSEALVVSASEDATIKVFDTE----TGELER-----------SLRGHTDSV 153 (406)
T ss_pred ChhhcCCCCCchhhhhc-cccceeeeeeccCceEEEEecCCceEEEEEcc----chhhhh-----------hhhccccce
Confidence 3334554433333 445 68899999999999999999999999998642 221111 123777889
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.+|+|..-|+++|++++ |-.+++||.++ -++.++..+|+..+.++.|-|-|..|+|+++|. +|+.|
T Consensus 154 ~di~~~a~Gk~l~tcSs-------Dl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~------tik~W 220 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSS-------DLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN------TIKAW 220 (406)
T ss_pred eEEEEecCccEEEecCC-------ccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccccc------ceeEE
Confidence 99999999999995443 45599999843 355666778888999999999999999999974 69999
Q ss_pred eC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
|- +|.-.. +++.+ ..+|..++-+-||.++|+++.|. +|++|-+.+.. .|++++.|+.-.-+++|-|+..+.
T Consensus 221 e~~tg~cv~--t~~~h-~ewvr~v~v~~DGti~As~s~dq---tl~vW~~~t~~--~k~~lR~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 221 ECDTGYCVK--TFPGH-SEWVRMVRVNQDGTIIASCSNDQ---TLRVWVVATKQ--CKAELREHEHPVECIAWAPESSYP 292 (406)
T ss_pred ecccceeEE--eccCc-hHhEEEEEecCCeeEEEecCCCc---eEEEEEeccch--hhhhhhccccceEEEEecccccCc
Confidence 95 444333 33433 46999999999999999999999 99999999864 367777665445789999987531
Q ss_pred -EEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEE
Q 000992 335 -LICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 335 -L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
+.-.++++. .........-++++++|+ |+.|||..+| +|.++|.+++|+|.| +.|++..
T Consensus 293 ~i~~at~~~~------------~~~~l~s~SrDktIk~wd-----v~tg~cL~tL~ghdnwVr~~af~p~G--kyi~Sca 353 (406)
T KOG0295|consen 293 SISEATGSTN------------GGQVLGSGSRDKTIKIWD-----VSTGMCLFTLVGHDNWVRGVAFSPGG--KYILSCA 353 (406)
T ss_pred chhhccCCCC------------CccEEEeecccceEEEEe-----ccCCeEEEEEecccceeeeeEEcCCC--eEEEEEe
Confidence 000010000 001122233455777765 5778999999 599999999999999 9999999
Q ss_pred CCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 413 SDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 413 ~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
.|+++++|++.+..|+.+++.++ .-+..+.|..+--++.+|+-+ .++++|
T Consensus 354 DDktlrvwdl~~~~cmk~~~ah~------------hfvt~lDfh~~~p~VvTGsVd--qt~Kvw 403 (406)
T KOG0295|consen 354 DDKTLRVWDLKNLQCMKTLEAHE------------HFVTSLDFHKTAPYVVTGSVD--QTVKVW 403 (406)
T ss_pred cCCcEEEEEeccceeeeccCCCc------------ceeEEEecCCCCceEEecccc--ceeeee
Confidence 99999999999988887766442 246667777666677776654 444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-17 Score=202.29 Aligned_cols=316 Identities=17% Similarity=0.158 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHh
Q 000992 808 ECNKVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLW 887 (1196)
Q Consensus 808 ~~~KVn~iC~a~~~~l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~ 887 (1196)
.++|-+.||++.|.-|+. .++..+.+.-++.+..+.. +-+|....+++|-.= .-.=+. ++..-.+.+. .|
T Consensus 656 ~~~ka~VvLQ~~RGNLEt--I~pR~lVLa~vr~~l~~~~--y~~AF~~~RkhRidl-nii~d~---~~~~Fl~nv~--af 725 (1265)
T KOG1920|consen 656 VPQKAAVVLQMPRGNLET--IYPRILVLAKVRTLLDRLR--YKEAFEVMRKHRIDL-NIIFDY---DPKRFLKNVP--AF 725 (1265)
T ss_pred ccchhhHhHhhcCCCcee--echhhhHHHHHHHHHHHHH--HHHHHHHHHHhccCc-cchhhc---CHHHHHhhHH--HH
Confidence 457899999999999998 7899999999999998888 999999988887320 000000 1111112211 22
Q ss_pred hcChH-----HHHHHHHhccChh-HHHHHHH----Hhc--CCc----chhhH-H-HHHHhcC-ChhhhcccHHHHhhC--
Q 000992 888 LADSE-----AVYEAALGLYDLN-LAAIVAL----NSQ--RDP----KEFLP-Y-LQELESM-PPLLMRYTIDLRLQR-- 946 (1196)
Q Consensus 888 L~d~~-----~Ly~~ALg~yD~~-lal~vAq----~sq--~Dp----keYlp-f-L~~L~~l-~~~~~r~~Id~~L~r-- 946 (1196)
|=+.| .||=.+|.-=|+- .+.-.-- +++ +|| .++++ - ++-|.+. |..+..+-|-.|++.
T Consensus 726 l~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~~~~~~ilTs~vk~~~ 805 (1265)
T KOG1920|consen 726 LKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALERRAPDKFNLFILTSYVKSNP 805 (1265)
T ss_pred hccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhhcCcchhhHHHHHHHHhcCc
Confidence 22221 1343444322220 0000000 111 233 12211 1 1222222 334444556666654
Q ss_pred --HHHHHHHHHHcC----CCcHHHHHHHH----HHHhcChHHHHhhc-------------CCcHHHHHHHHHHHHHHhcc
Q 000992 947 --FENALKHIVSMG----DSYHADCLNLM----KKYAQLFPLGLKLI-------------TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 947 --y~~Al~~l~~~g----~~~~~~ale~~----~~~~~ly~~AL~L~-------------~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
-++||+.+.+.. ..-.++|++++ ... .+|+.||.+| +||+++.++++.+-. .
T Consensus 806 ~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn-~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP~L~el~~----m 880 (1265)
T KOG1920|consen 806 PEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVN-ELFNSALGTYDLDLALLVAQKSQKDPKEYLPFLNELKK----M 880 (1265)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHH-HHHHhhhcccchHHHHHHHHHhccChHHHHHHHHHHhh----c
Confidence 577777776654 23358888887 556 7788888876 499999999976652 2
Q ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000992 1004 KCFEDAATTYFCCSSLEKAMKAYRASG--NWSGVLTVAGLL----------KLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~~kAl~~y~~~g--~w~~al~la~~l----------~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1196)
--...-..+-...++|++|+....++| .|.+++.+.++. ..+++..+.++...|++|.+.++|.+||.
T Consensus 881 ~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal 960 (1265)
T KOG1920|consen 881 ETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAAL 960 (1265)
T ss_pred hhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 233444567777888888888888887 577777766654 34667778899999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC--CchhHH---HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1072 IALDYCGDVTNGISLLIDARDWEEALRVAFMHR--REDLIT---KVKHAS------LECASSLIGEYKEGLEKVGKYLT 1139 (1196)
Q Consensus 1072 i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~--~~dL~e---~v~~~l------~e~~~~~~e~l~~~~~~~~~~~~ 1139 (1196)
+|+. +|+.++|+.+|..+++|.+|+.+|.+.. +.++.. ++...| .||+....|.+.+.+++|.-+|+
T Consensus 961 ~Ye~-~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~k 1038 (1265)
T KOG1920|consen 961 MYER-CGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCK 1038 (1265)
T ss_pred HHHH-hccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhh
Confidence 9999 9999999999999999999999999644 344552 244444 67899999999999999988876
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=208.36 Aligned_cols=293 Identities=14% Similarity=0.170 Sum_probs=203.9
Q ss_pred EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
..++..|.+.|+-+.|||+|++||++|.|.|..+|....|..-+. .++.. +|..+|..|.||||.+|+
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-~~tlv-----------gh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-KKTLV-----------GHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-eeeee-----------cccCceEEEEECCCCCeE
Confidence 346677899999999999999999999999999986544432111 12221 667788999999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1196)
.+++. +..+++||..+|.+....+. +...+.+.+|.|||..+.+|+.|. .+.-|+.+|...+.+.
T Consensus 285 laCg~-------~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr------~i~~wdlDgn~~~~W~- 350 (519)
T KOG0293|consen 285 LACGF-------DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR------TIIMWDLDGNILGNWE- 350 (519)
T ss_pred EecCc-------hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC------cEEEecCCcchhhccc-
Confidence 95543 45699999999998877643 355679999999999999998864 5889999987765432
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEE
Q 000992 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
+.....|.+++.++||+.+.+...|. .|++++.....- ..+.- ...+ +++.-|.++.+ ++.+
T Consensus 351 -gvr~~~v~dlait~Dgk~vl~v~~d~---~i~l~~~e~~~d---r~lis-e~~~its~~iS~d~k~--~Lvn------- 413 (519)
T KOG0293|consen 351 -GVRDPKVHDLAITYDGKYVLLVTVDK---KIRLYNREARVD---RGLIS-EEQPITSFSISKDGKL--ALVN------- 413 (519)
T ss_pred -ccccceeEEEEEcCCCcEEEEEeccc---ceeeechhhhhh---hcccc-ccCceeEEEEcCCCcE--EEEE-------
Confidence 22234699999999999999999988 799998765211 00111 1112 44444444332 1211
Q ss_pred EEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
...+.+.+|++..+.++..-..+. ...-|..-.|.--. ...+|+|+.|+.|+||+..++.
T Consensus 414 -----------------L~~qei~LWDl~e~~lv~kY~Ghk--q~~fiIrSCFgg~~-~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 414 -----------------LQDQEIHLWDLEENKLVRKYFGHK--QGHFIIRSCFGGGN-DKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred -----------------cccCeeEEeecchhhHHHHhhccc--ccceEEEeccCCCC-cceEEecCCCceEEEEEccCCc
Confidence 123456777776443322211111 12234444454333 1689999999999999998877
Q ss_pred ccccccCCceeeeeecccccCCcEEEEEEecCC-eEEEEEecCCCCceEEEEe
Q 000992 427 MLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 427 ~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~ 478 (1196)
.+.++.|| ...|..++|.|.+ .++|+++++ +++.+|..
T Consensus 474 ll~~LsGH------------s~~vNcVswNP~~p~m~ASasDD--gtIRIWg~ 512 (519)
T KOG0293|consen 474 LLAVLSGH------------SKTVNCVSWNPADPEMFASASDD--GTIRIWGP 512 (519)
T ss_pred eeEeecCC------------cceeeEEecCCCCHHHhhccCCC--CeEEEecC
Confidence 77777775 4579999999965 678988887 78889965
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-21 Score=214.95 Aligned_cols=269 Identities=15% Similarity=0.162 Sum_probs=203.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+.|-++|..|.++|+++-+-+|+...++-+. | +-.| .+.|.++.||++|..+++|..+|.|+.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt---i------lQaH----Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET---I------LQAH----DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceeeHHH---H------hhhh----cccceeEEEccCCCEEEEcCCCceEEe
Confidence 45667899999999999999999999983222221 1 2334 357999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+++-.-+. +-++|...|++++|||...-.+++|+||+|+||+- ..... |.+..+|.-.|.++.
T Consensus 165 WqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf----~~~ke-----------e~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF----RMPKE-----------ERVLRGHGWDVKSVD 229 (464)
T ss_pred cccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec----cCCch-----------hheeccCCCCcceec
Confidence 999876555 45566688999999999999999999999999852 11111 112235555679999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
|.|.-..+| +++ .|..|++||+.+|.++.++.+|...|..+.|+|+|++|+++|+|. .+++||.. .
T Consensus 230 WHP~kgLia-sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~------~~kv~DiR-~ 295 (464)
T KOG0284|consen 230 WHPTKGLIA-SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ------SCKVFDIR-T 295 (464)
T ss_pred cCCccceeE-Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc------eEEEEehh-H
Confidence 999999999 676 357999999999999999999999999999999999999999974 68899853 1
Q ss_pred eEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-CCcEEEEEccCCCceEEEE
Q 000992 261 ERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpD-g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~-~~~~~v~Wsp~~~~~L~~~ 338 (1196)
...-|+++++ ...|.+++|+|= -.+|++++.|+ .|..|.+.... -.-++...+ ..+++++|||-|-. |+.+
T Consensus 296 mkEl~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dg---svvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhi-l~tg 368 (464)
T KOG0284|consen 296 MKELFTYRGH-KKDVTSLTWHPLNESLFTSGGSDG---SVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHI-LATG 368 (464)
T ss_pred hHHHHHhhcc-hhhheeeccccccccceeeccCCC---ceEEEeccccc--cccCCCcccccceeeeecccccee-Eeec
Confidence 1112334433 457999999995 45889999999 89999887211 011222222 23489999998853 4444
Q ss_pred e
Q 000992 339 T 339 (1196)
Q Consensus 339 ~ 339 (1196)
+
T Consensus 369 s 369 (464)
T KOG0284|consen 369 S 369 (464)
T ss_pred C
Confidence 3
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=216.77 Aligned_cols=225 Identities=13% Similarity=0.159 Sum_probs=163.9
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCC--------eEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEe
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGN--------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT 144 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~--------~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~ 144 (1196)
.+.|.+++|+| +++.|++|+.||+|++||..++ .+..+..|...|.+++|+|++ .+||+++.|++|++|+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 46899999999 8999999999999999998653 123344578899999999986 6999999999999987
Q ss_pred cc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 145 HD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 145 ~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
.. ...+.. +.+|.+.|.+++|+|||.+|| +++ .|++|||||..+|+...+..+|.+
T Consensus 155 l~tg~~~~~----------------l~~h~~~V~sla~spdG~lLa-tgs------~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 155 VERGKAVEV----------------IKCHSDQITSLEWNLDGSLLC-TTS------KDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred CCCCeEEEE----------------EcCCCCceEEEEEECCCCEEE-Eec------CCCEEEEEECCCCcEEEEEecCCC
Confidence 32 222111 225667889999999999999 565 479999999989999888888776
Q ss_pred c-eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe-ccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEE
Q 000992 224 M-GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-NEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1196)
Q Consensus 224 ~-v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l-~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~ 300 (1196)
. ...+.|.|++.+|++++.... ....|++|+...... .+.. ..+....+....|+||+.+|++++. |+ +|+
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKS--QQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCC--CCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 4 357889999998887764321 246799999542211 1111 1122235667789999999999884 77 899
Q ss_pred EEEecCCEEEEEEEEEEecCCc-EEEEEccC
Q 000992 301 ICFFSNNHWYLKYEIRYLRRDG-IRFMWHPT 330 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~ 330 (1196)
+|++.+.+.+.. ..+..... ..+.|.|.
T Consensus 286 iwdl~~~~~~~~--~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 286 CFELMNERLTFC--SSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEeeCCceEEE--eeccCCCCCcceEeccc
Confidence 999998765332 23322222 44555553
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-18 Score=199.65 Aligned_cols=450 Identities=14% Similarity=0.131 Sum_probs=269.5
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC---EEEEEECCCcEEEE
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLLLH 102 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~---~La~as~dG~I~lw 102 (1196)
.+| .-++.|.++++-. |..||. ..- ..+.+ +.+| ...|++++|.|+++ .+++|+.||.|++|
T Consensus 20 ~sw-~~~~~vafGa~~~-Iav~dp--~k~---~i~t~----l~GH----~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW 84 (764)
T KOG1063|consen 20 SSW-GPGGLVAFGAGPA-IAVADP--EKI---LIVTT----LDGH----VARVNCVHWLPTSEIVAEMVSGDSDGRVILW 84 (764)
T ss_pred ccc-cccceEEecCCce-EEEeCc--ccc---eeEEe----ccCC----ccceEEEEEcccccccceEEEccCCCcEEEE
Confidence 344 3345555555544 888887 222 11222 5555 46899999999998 89999999999999
Q ss_pred ECCC-CeEEEeeeecC-cEEEEEECCCCCEEEEEeCCceEEEEeccCcee---eee----------eccccc-Cccccc-
Q 000992 103 SVDG-NATEVVGRVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL---YEN----------PLEELA-EGFDVH- 165 (1196)
Q Consensus 103 ~~~~-~~~e~vg~~~~-~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~---~~~----------~l~~~~-~~~~Vs- 165 (1196)
.+.. ..+.+.+ +++ .+.+++++.--........|+++.+|++.-+.+ ... ++.... +..++.
T Consensus 85 ~l~~~~~~~i~~-~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla 163 (764)
T KOG1063|consen 85 KLRDEYLIKIYT-IQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA 163 (764)
T ss_pred EEeehheEEEEe-ecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE
Confidence 9874 3222222 222 456666665544444447899999998733320 000 010000 111110
Q ss_pred --------------cCccc------cCCCCeEEEEEccCCc---eEEEeeccccccCCCCEEEEEECCCCc---------
Q 000992 166 --------------EPELS------SSFSFKSPISWRGDGK---YFATLSEFCNSSKLHKRLKVWERDSGT--------- 213 (1196)
Q Consensus 166 --------------~tqf~------~~~~~v~~isWspDG~---~lAsvss~d~~~~~d~~irVWd~~~G~--------- 213 (1196)
..+|+ ||.|.|.+|+|+--|. ++| ++| .|+.||||...-+.
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~la-S~S------QD~yIRiW~i~~~~~~~~~~~e~ 236 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLA-SSS------QDRYIRIWRIVLGDDEDSNERED 236 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEE-ecC------CceEEEEEEEEecCCcccccccc
Confidence 22444 8999999999986554 666 455 68999999753221
Q ss_pred ----------------EE------EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEec
Q 000992 214 ----------------LQ------ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDIN 268 (1196)
Q Consensus 214 ----------------l~------~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~ 268 (1196)
.. ..+.+|+.+|.++-|+|.|..|.|+|.|+ ++.+|++. |.-.....+-
T Consensus 237 ~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk------smiiW~pd~~tGiWv~~vRlG 310 (764)
T KOG1063|consen 237 SLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK------SMIIWKPDENTGIWVDVVRLG 310 (764)
T ss_pred ccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc------ceEEEecCCccceEEEEEEee
Confidence 11 11238999999999999998888888875 48889863 2221111121
Q ss_pred --cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 269 --EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 269 --~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
++....-+..-|||+|..+.+.+..+ ..++|-.. +..|..-..+..|-++...+.|+|+|...|.+.+ |.+-.
T Consensus 311 e~gg~a~GF~g~lw~~n~~~ii~~g~~G---g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-DQTTR 386 (764)
T KOG1063|consen 311 EVGGSAGGFWGGLWSPNSNVIIAHGRTG---GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-DQTTR 386 (764)
T ss_pred cccccccceeeEEEcCCCCEEEEecccC---cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-cccee
Confidence 11134578899999999888888887 79999944 5667554445555455689999999986444433 22211
Q ss_pred -EEEE----EEe-ee---------------cCCCeeEEE-----------------------------------------
Q 000992 346 -TYNF----IWT-TA---------------VMENSTALV----------------------------------------- 363 (1196)
Q Consensus 346 -~~~~----~~~-~~---------------~~d~~~v~v----------------------------------------- 363 (1196)
...| .|. ++ ..+...+..
T Consensus 387 lFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vpa 466 (764)
T KOG1063|consen 387 LFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPA 466 (764)
T ss_pred eecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccc
Confidence 0111 000 00 001111111
Q ss_pred -------------EcCCEE---EEeecccc---CCCCCcee------------eeecCCCCEEEEEEecCCCCCEEEEEE
Q 000992 364 -------------IDGSKI---LVTPLSLS---LMPPPMYL------------FSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 364 -------------iDg~~l---~lt~l~~~---~vpppm~~------------~~l~~~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
.+|..- .=+|+... ...||+-- +-.+|.-.|.+++.||+| +.+|++.
T Consensus 467 LGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g--nliASaC 544 (764)
T KOG1063|consen 467 LGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG--NLIASAC 544 (764)
T ss_pred ccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC--CEEeehh
Confidence 112110 11122111 11255431 112355669999999999 8999886
Q ss_pred CC-----CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCcccc
Q 000992 413 SD-----GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLG 487 (1196)
Q Consensus 413 ~d-----g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1196)
.. .-|+||+..+-...+++.|| .-.|.+++|||||++|++.+.+ .++.+|+...+. .
T Consensus 545 KS~~~ehAvI~lw~t~~W~~~~~L~~H------------sLTVT~l~FSpdg~~LLsvsRD--Rt~sl~~~~~~~-~--- 606 (764)
T KOG1063|consen 545 KSSLKEHAVIRLWNTANWLQVQELEGH------------SLTVTRLAFSPDGRYLLSVSRD--RTVSLYEVQEDI-K--- 606 (764)
T ss_pred hhCCccceEEEEEeccchhhhheeccc------------ceEEEEEEECCCCcEEEEeecC--ceEEeeeeeccc-c---
Confidence 43 46899998875444445554 3479999999999999988876 577888763211 0
Q ss_pred chhhhhhhhcccccccccccccccceeeeeeeccCCcEE-EEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 488 FYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVI-AIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
.| ..+.. .....+|+ ...++| ++..++-.++|.+|..|...
T Consensus 607 ---~e--------------------~~fa~-~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 607 ---DE--------------------FRFAC-LKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred ---hh--------------------hhhcc-ccccceEEEEcccCc-ccceeEEecCCceEEEEecc
Confidence 00 00111 11133444 334677 77778889999999999654
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=189.55 Aligned_cols=243 Identities=11% Similarity=0.061 Sum_probs=188.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
++..+.+.+|...|..++--+ |..+|++ +++.. .+.+ +.++ ...|.+|.|..||+.+.+|++||+++|
T Consensus 42 qVNrLeiTpdk~~LAaa~~qh-vRlyD~~-S~np~--Pv~t----~e~h----~kNVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQH-VRLYDLN-SNNPN--PVAT----FEGH----TKNVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred ceeeEEEcCCcchhhhccCCe-eEEEEcc-CCCCC--ceeE----Eecc----CCceEEEEEeecCeEEEecCCCceEEE
Confidence 889999999999888777665 9999995 33321 1222 3333 468999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||...-.+. ... |..+|+++...|++.-|.++..+|.|.+|+..-+.-+.. +-+++ +..+.+++
T Consensus 110 WdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~-liPe~-------------~~~i~sl~ 174 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE-LIPED-------------DTSIQSLT 174 (311)
T ss_pred EeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc-cCCCC-------------CcceeeEE
Confidence 999885554 344 468999999999999999999999998876432222222 22221 24568999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE------eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~------~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
--|||.+++. +. ..+...||+.-+++..+- +..|.+.+..+-+|||+++||++|.|+ +|++
T Consensus 175 v~~dgsml~a-~n------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk------tv~i 241 (311)
T KOG0315|consen 175 VMPDGSMLAA-AN------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK------TVKI 241 (311)
T ss_pred EcCCCcEEEE-ec------CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc------eEEE
Confidence 9999999983 32 457899999855443333 345788889999999999999999975 6999
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+..+-...+..+.. ++.+|++.+||.||++|.+++.|. +++||++.+.+
T Consensus 242 wn~~~~~kle~~l~g-h~rWvWdc~FS~dg~YlvTassd~---~~rlW~~~~~k 291 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTG-HQRWVWDCAFSADGEYLVTASSDH---TARLWDLSAGK 291 (311)
T ss_pred EecCCceeeEEEeec-CCceEEeeeeccCccEEEecCCCC---ceeecccccCc
Confidence 998876555555554 357999999999999999999998 99999998753
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=197.81 Aligned_cols=286 Identities=12% Similarity=0.169 Sum_probs=211.0
Q ss_pred CCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEE-CCC--CCEEEEEeCCceEEEEeccC
Q 000992 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISP-SPD--GDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 72 ~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~aw-SPD--g~~LA~~s~d~tV~l~~~~~ 147 (1196)
++..+.|.+|.-. ++.+.+++-||++++|+..|..+. ++| |.+.|.+++| .+| ..++++++.|+++.+|. |
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~--~ 176 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK--W 176 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEec-CCcceeeeEEEecCCccceEEEecCCceEEEEE--e
Confidence 3445788888777 789999999999999999997665 555 6899998888 333 33699999999999985 3
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-----------------
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD----------------- 210 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~----------------- 210 (1196)
++-.. .... ..+-+||...|-+|+=.+||..|+ ++++ |.+|+||+.+
T Consensus 177 ~~~~~-~~~~--------~~~~~GHk~~V~sVsv~~sgtr~~-SgS~------D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 177 NVGEN-KVKA--------LKVCRGHKRSVDSVSVDSSGTRFC-SGSW------DTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred cCchh-hhhH--------HhHhcccccceeEEEecCCCCeEE-eecc------cceeeecccCCCccccccccchhhhhh
Confidence 32110 0000 011237888999999999999999 6774 6899999910
Q ss_pred --------CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 211 --------SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 211 --------~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
++....++++|...|.++-|++ ...+.|++.| ++|+.|+.. .+............++++.+|
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwD------HTIk~WDle---tg~~~~~~~~~ksl~~i~~~~ 310 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWD------HTIKVWDLE---TGGLKSTLTTNKSLNCISYSP 310 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-CCceEeeccc------ceEEEEEee---cccceeeeecCcceeEeeccc
Confidence 1234556788999999999999 4567788875 789999853 111111111234688999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCE-EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeE
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA 361 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~-wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v 361 (1196)
.+.+||+|+.|+ .++|||-.+.. -..+|.+..|.+-+..+.|+|.....|..++.|
T Consensus 311 ~~~Ll~~gssdr---~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D-------------------- 367 (423)
T KOG0313|consen 311 LSKLLASGSSDR---HIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYD-------------------- 367 (423)
T ss_pred ccceeeecCCCC---ceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecC--------------------
Confidence 999999999999 89999976542 234567777666568899999998766555433
Q ss_pred EEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 362 LVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 362 ~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+++++|+.|..- .|| +.+ .|.+.|.+|.|+..+ .+++|+.|++|+++.-.
T Consensus 368 -----~t~klWDvRS~k--~pl--ydI~~h~DKvl~vdW~~~~---~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 368 -----NTVKLWDVRSTK--APL--YDIAGHNDKVLSVDWNEGG---LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -----CeEEEEEeccCC--Ccc--eeeccCCceEEEEeccCCc---eEEeccCcceEEEeccc
Confidence 356777776421 255 455 589999999999875 89999999999999764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-19 Score=187.83 Aligned_cols=279 Identities=13% Similarity=0.162 Sum_probs=202.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
.+.|..+.|+|||..||+|+.|..|.||+..+.. ....| |.+.|..+.|++||..|.+++.|++|..| |..+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~gtDk~v~~w----D~~t 121 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG-HSGAVMELHGMRDGSHILSCGTDKTVRGW----DAET 121 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc-ccceeEeeeeccCCCEEEEecCCceEEEE----eccc
Confidence 4789999999999999999999999999987621 22334 69999999999999999999999999765 5545
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
+..... |++|.+-+..+.=+-=|..++ ++. ..|+++||||....+...+.+ ....+.+++|+
T Consensus 122 G~~~rk-----------~k~h~~~vNs~~p~rrg~~lv-~Sg-----sdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~ 183 (338)
T KOG0265|consen 122 GKRIRK-----------HKGHTSFVNSLDPSRRGPQLV-CSG-----SDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFK 183 (338)
T ss_pred ceeeeh-----------hccccceeeecCccccCCeEE-Eec-----CCCceEEEEeecccchhhccc-cceeEEEEEec
Confidence 544432 335556667777555677777 343 257999999997777777765 34557999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
-++..+-+|+-| +.|++|+. ++ ++.+++.++ .+.|..|+-||+|..|.+-+-|. +|++|++.-++--
T Consensus 184 d~s~qv~sggId------n~ikvWd~r~~--d~~~~lsGh-~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 184 DTSDQVISGGID------NDIKVWDLRKN--DGLYTLSGH-ADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPS 251 (338)
T ss_pred ccccceeecccc------CceeeeccccC--cceEEeecc-cCceeeEEeccCCCccccccccc---eEEEEEecccCCC
Confidence 999999999986 46999995 22 223356654 56899999999999999999998 9999999876542
Q ss_pred EE--EEEEEecC--Cc--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 311 LK--YEIRYLRR--DG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 311 lk--q~l~~~~~--~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
-. +....+.. +. ...+|+|++.. +..++.| ...++|++..- ..+
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~d----r~vyvwd~~~r----------~~l--------------- 301 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSAD----RFVYVWDTTSR----------RIL--------------- 301 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCc-ccccccc----ceEEEeecccc----------cEE---------------
Confidence 11 12222211 11 56789998865 3333322 33445554310 011
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+.+ +|.+.|++++|+|.. .+|.++++|.+|.|=+
T Consensus 302 -yklpGh~gsvn~~~Fhp~e--~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 302 -YKLPGHYGSVNEVDFHPTE--PIILSCSSDKTIYLGE 336 (338)
T ss_pred -EEcCCcceeEEEeeecCCC--cEEEEeccCceeEeec
Confidence 222 377889999999998 8999999999998743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=208.61 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=160.1
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCC----------CeE----EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEE
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDG----------NAT----EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILV 142 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~----------~~~----e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l 142 (1196)
|.....++|+..++.++.+.....|+..+ |+. ..+.+|.+.|.+++||| |+++||+++.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 44444566655555555555555555433 221 12344689999999999 9999999999999999
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
|+..-....... ..++ ..+.+|...|.+++|+|++ .+|| +++ .|++|+|||..+|+...++..|
T Consensus 103 Wdi~~~~~~~~~------~~~l--~~L~gH~~~V~~l~f~P~~~~iLa-Sgs------~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 103 WGIPEEGLTQNI------SDPI--VHLQGHTKKVGIVSFHPSAMNVLA-SAG------ADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred EecCCCcccccc------Ccce--EEecCCCCcEEEEEeCcCCCCEEE-EEe------CCCEEEEEECCCCeEEEEEcCC
Confidence 874311110000 0001 1244778889999999986 5888 565 4699999999899998888889
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceE
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSV 299 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V 299 (1196)
...+.+++|+|+|++||+++.|+ .|++|+. +|..... +..+....+..+.|+|++..|++++.++ ...+|
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg------~IrIwD~rsg~~v~t--l~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDK------KLNIIDPRDGTIVSS--VEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCC------EEEEEECCCCcEEEE--EecCCCCcceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 99999999999999999999864 6999994 4544332 3333333456789999988887765321 11289
Q ss_pred EEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEe-cCCcEEE
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWT-LDGQITT 346 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~-~~g~~~~ 346 (1196)
+|||+.+...-+ .....+.... ....|+|++.. |.++. .+|.+..
T Consensus 240 klWDlr~~~~p~-~~~~~d~~~~~~~~~~d~d~~~-L~lggkgDg~Iri 286 (493)
T PTZ00421 240 MLWDTRKMASPY-STVDLDQSSALFIPFFDEDTNL-LYIGSKGEGNIRC 286 (493)
T ss_pred EEEeCCCCCCce-eEeccCCCCceEEEEEcCCCCE-EEEEEeCCCeEEE
Confidence 999998653211 1111222222 45578888764 44443 3555543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=179.75 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=197.0
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCc--eeeeeecccccCccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWD--LLYENPLEELAEGFD 163 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d--~~~~~~l~~~~~~~~ 163 (1196)
-.||+|+-|-||++|...+|.+. .+.+-++-|+++...||++.||.|+. ..|++++. ..+ |+..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t----------- 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVAT----------- 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeE-----------
Confidence 47899999999999999999885 77777888999999999999998875 47877642 111 2222
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
|-+|...|..+.|--||++.. .|+ +|+++||||...-.++..++ +...|.++...|+..-|.++...
T Consensus 79 -----~e~h~kNVtaVgF~~dgrWMy-Tgs------eDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 79 -----FEGHTKNVTAVGFQCDGRWMY-TGS------EDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred -----EeccCCceEEEEEeecCeEEE-ecC------CCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCC
Confidence 335667789999999999999 575 58999999997766666666 55889999999987777666553
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE-----EEEEe
Q 000992 244 KSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY-----EIRYL 318 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq-----~l~~~ 318 (1196)
..|++|+.-.......-+|.. ...|.+++--|||+.||.+...+ ...+|++-+.. ...+ .+..+
T Consensus 146 ------g~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~~-~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 146 ------GNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNHQ-TASELEPVHKFQAH 214 (311)
T ss_pred ------CcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCCc---cEEEEEccCCC-ccccceEhhheecc
Confidence 469999954322221123332 35799999999999999999888 89999987621 1111 11122
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEE
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEM 397 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~V 397 (1196)
........+||++.+ |+..+.+.+ +++|....- -|-..++ .|..+||+.
T Consensus 215 ~~~il~C~lSPd~k~-lat~ssdkt-------------------------v~iwn~~~~----~kle~~l~gh~rWvWdc 264 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKY-LATCSSDKT-------------------------VKIWNTDDF----FKLELVLTGHQRWVWDC 264 (311)
T ss_pred cceEEEEEECCCCcE-EEeecCCce-------------------------EEEEecCCc----eeeEEEeecCCceEEee
Confidence 222366778888765 444444433 333322211 0111223 377899999
Q ss_pred EEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC
Q 000992 398 AFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 398 afspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g 433 (1196)
+||.|| ++|+++++|+++++|++.........+|
T Consensus 265 ~FS~dg--~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 265 AFSADG--EYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred eeccCc--cEEEecCCCCceeecccccCceeeecCC
Confidence 999999 8999999999999999987544433344
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=206.25 Aligned_cols=269 Identities=17% Similarity=0.188 Sum_probs=193.3
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
.|. -.+.|.++.+.. +|+|+. .++... . +..+. .+.|+++.|+++|..||+|..+|.|.|||...
T Consensus 184 dWs-s~n~laValg~~-vylW~~--~s~~v~-~-------l~~~~---~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 184 DWS-SANVLAVALGQS-VYLWSA--SSGSVT-E-------LCSFG---EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred hcc-cCCeEEEEecce-EEEEec--CCCceE-E-------eEecC---CCceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 454 356677766655 999999 666542 1 22221 46899999999999999999999999999876
Q ss_pred C-eEEE-eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 107 N-ATEV-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 107 ~-~~e~-vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
. .++. .++|...|-+++|+ +..|.+|+.|+.|..++.. ...... . ..++|...|+.+.|++|
T Consensus 249 ~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR----~~~~~~---------~-~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 249 QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR----ISQHVV---------S-TLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe----cchhhh---------h-hhhcccceeeeeEECCC
Confidence 3 4554 44488999999999 7799999999999775421 111110 0 13367778899999999
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-CeeE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-GLER 262 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~ 262 (1196)
|.+|| +++ .|+.+.|||...-+.......|.+.|.+++|+| +..+||+|+.-. +..|+||+.+ |.+.
T Consensus 313 ~~~lA-SGg------nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~----D~~i~fwn~~~g~~i 381 (484)
T KOG0305|consen 313 GNQLA-SGG------NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSA----DRCIKFWNTNTGARI 381 (484)
T ss_pred CCeec-cCC------CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCc----ccEEEEEEcCCCcEe
Confidence 99999 565 579999999966666777778999999999999 567999987644 5789999976 3222
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCC
Q 000992 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.. ......|.+|.||+..+-|+++....+ +.|.||....+. +..++..|..-+..++|+|++.. +.++..|.
T Consensus 382 ~~----vdtgsQVcsL~Wsk~~kEi~sthG~s~-n~i~lw~~ps~~--~~~~l~gH~~RVl~la~SPdg~~-i~t~a~DE 453 (484)
T KOG0305|consen 382 DS----VDTGSQVCSLIWSKKYKELLSTHGYSE-NQITLWKYPSMK--LVAELLGHTSRVLYLALSPDGET-IVTGAADE 453 (484)
T ss_pred cc----cccCCceeeEEEcCCCCEEEEecCCCC-CcEEEEeccccc--eeeeecCCcceeEEEEECCCCCE-EEEecccC
Confidence 21 112357999999999976666554432 269999987743 22334444333488999999754 66666565
Q ss_pred cEE
Q 000992 343 QIT 345 (1196)
Q Consensus 343 ~~~ 345 (1196)
++.
T Consensus 454 Tlr 456 (484)
T KOG0305|consen 454 TLR 456 (484)
T ss_pred cEE
Confidence 554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=183.19 Aligned_cols=266 Identities=16% Similarity=0.195 Sum_probs=195.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~I~ 100 (1196)
.+..++|..+|..+.+++-|+....|++ ........ ...++| ++.|..+.|.|. ...+++++.|.+|+
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~--e~~r~~~~-----~~~~gh----~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNL--ERDRFRKE-----LVYRGH----TDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEe--cchhhhhh-----hcccCC----CcchhhheeCCCCCcceEEecCCceEE
Confidence 6888999999999999999998999988 33321100 013334 457888899875 47899999999999
Q ss_pred EEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||...+++- .+. ..++-.-+.|||||+++|.++.|..|...+ +...+..+.+... .+..
T Consensus 91 ~wd~r~~k~~~~i~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-----------------e~ne 152 (313)
T KOG1407|consen 91 IWDIRSGKCTARIE-TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-----------------EVNE 152 (313)
T ss_pred EEEeccCcEEEEee-ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-----------------eeee
Confidence 9999876653 222 245667789999999999999998876653 4444444333222 3478
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
++|+-++.+|. ... +.++|.|-.--+-+.+.+...|+..--+|.|+|+|+++|+|+.|. -|.+|+.+
T Consensus 153 ~~w~~~nd~Ff-lt~------GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA------lvSLWD~~ 219 (313)
T KOG1407|consen 153 ISWNNSNDLFF-LTN------GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA------LVSLWDVD 219 (313)
T ss_pred eeecCCCCEEE-Eec------CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc------eeeccChh
Confidence 99998888776 332 468999988767777788888888788999999999999999975 58899977
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLIC 337 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~ 337 (1196)
.+.=-. .+ ...+-.|..|+||-||++||++++|. .|-|=.+.++.- ..++.. ++. ..|+|||..++ |+.
T Consensus 220 ELiC~R-~i-sRldwpVRTlSFS~dg~~lASaSEDh---~IDIA~vetGd~--~~eI~~--~~~t~tVAWHPk~~L-LAy 289 (313)
T KOG1407|consen 220 ELICER-CI-SRLDWPVRTLSFSHDGRMLASASEDH---FIDIAEVETGDR--VWEIPC--EGPTFTVAWHPKRPL-LAY 289 (313)
T ss_pred Hhhhhe-ee-ccccCceEEEEeccCcceeeccCccc---eEEeEecccCCe--EEEeec--cCCceeEEecCCCce-eeE
Confidence 543100 11 12356799999999999999999998 788887776541 123332 444 88999998876 555
Q ss_pred Ee
Q 000992 338 WT 339 (1196)
Q Consensus 338 ~~ 339 (1196)
..
T Consensus 290 A~ 291 (313)
T KOG1407|consen 290 AC 291 (313)
T ss_pred Ee
Confidence 44
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=206.66 Aligned_cols=226 Identities=9% Similarity=0.014 Sum_probs=157.7
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCe---------EEEeeeecCcEEEEEECCCCCE-EEEEeCCceEEEE
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNA---------TEVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVM 143 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~~---------~e~vg~~~~~I~~~awSPDg~~-LA~~s~d~tV~l~ 143 (1196)
.+.|.+++|+|+ ++.||+|+.||+|++|+..++. +..+..|.+.|.+++|+|++.. ||+++.|++|++|
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 468999999997 7999999999999999986421 1234557889999999999986 5789999999998
Q ss_pred ec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 TH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+. ....+.... +...+.+++|+|||.+|| +++ .|++|||||..+|+...++.+|.
T Consensus 154 Dl~tg~~~~~i~-----------------~~~~V~SlswspdG~lLa-t~s------~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 154 DIENEKRAFQIN-----------------MPKKLSSLKWNIKGNLLS-GTC------VGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCcEEEEEe-----------------cCCcEEEEEECCCCCEEE-EEe------cCCEEEEEECCCCcEEEEEeccc
Confidence 73 222221111 224679999999999999 565 36899999998999999888888
Q ss_pred Ccee-----EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000992 223 FMGA-----VLEWMPSGANIAAVYDRKSENKCPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 223 ~~v~-----slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
+.+. ...|+|++++|++++.+.. ....|++|+... .....+.+.. ..+.+.....+++|.++++|..|+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~- 285 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDG- 285 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCC-
Confidence 7543 3356799999999887631 124699999542 2122222221 112233333456699999999999
Q ss_pred cceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCC
Q 000992 296 YDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKP 332 (1196)
Q Consensus 296 ~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~ 332 (1196)
+|++|++....-+.-.+ +....+ ..+.|.|...
T Consensus 286 --tIr~~e~~~~~~~~l~~--~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 286 --NCRYYQHSLGSIRKVNE--YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred --eEEEEEccCCcEEeecc--cccCCCccceEEccccc
Confidence 99999987542111111 222222 5677888654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=186.12 Aligned_cols=293 Identities=14% Similarity=0.117 Sum_probs=196.2
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe------EE-EeeeecCcEEEEEECCCCCEEEEEeCC-c
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA------TE-VVGRVEGGVRFISPSPDGDLLGVTTGF-G 138 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~------~e-~vg~~~~~I~~~awSPDg~~LA~~s~d-~ 138 (1196)
|++| ++.|++++||.||+.||+++.||+|++|+.+.-+ +. .+.. +.-+.++|+||-+-+++.-.. .
T Consensus 82 LKgH----~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGH----KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhcc----CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccCC
Confidence 5555 5789999999999999999999999999987511 11 2221 235789999998877665433 3
Q ss_pred eEEEEe--ccCceeeeeecccccCccccccCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE
Q 000992 139 QILVMT--HDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ 215 (1196)
Q Consensus 139 tV~l~~--~~~d~~~~~~l~~~~~~~~Vs~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~ 215 (1196)
++.++. +.-|- ..++ +.-++....|+ -|.-.+..|.--+.++|++ +++ .|.+|.+|+. .|+++
T Consensus 156 ~l~vyk~~K~~dG--~~~~----~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im-sas------~dt~i~lw~l-kGq~L 221 (420)
T KOG2096|consen 156 KLCVYKLVKKTDG--SGSH----HFVHIDNLEFERKHQVDIINIGIAGNAKYIM-SAS------LDTKICLWDL-KGQLL 221 (420)
T ss_pred EEEEEEeeecccC--CCCc----ccccccccccchhcccceEEEeecCCceEEE-Eec------CCCcEEEEec-CCcee
Confidence 455432 11110 0000 11111112222 3445677888899999999 455 3689999999 79998
Q ss_pred EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC----CCeeE---EEEEeccCCCCcEEEEEEccCCCeeE
Q 000992 216 ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER----NGLER---SSFDINEQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 216 ~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~----nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1196)
.+...........+-||+|++||+++.- .+|++||. .|.-. ..|.|.+| ...|.+++|||+++..+
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFT------pDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFT------PDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCC------CCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeE
Confidence 8766544445778999999999999984 57999984 44321 22455554 56799999999999999
Q ss_pred EEEccCCcceEEEEEecC-CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCC
Q 000992 289 AVVRFEEYDSVKICFFSN-NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGS 367 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n-~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~ 367 (1196)
+++.|+ +++|||++- || . -+.|+.|..+.
T Consensus 295 tvSkDG---~wriwdtdVrY~----------~---------~qDpk~Lk~g~---------------------------- 324 (420)
T KOG2096|consen 295 TVSKDG---KWRIWDTDVRYE----------A---------GQDPKILKEGS---------------------------- 324 (420)
T ss_pred EEecCC---cEEEeeccceEe----------c---------CCCchHhhcCC----------------------------
Confidence 999999 999999873 22 1 11233222211
Q ss_pred EEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccC
Q 000992 368 KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 368 ~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
.|.+. ..+...-++.||+| +.||+. ...+|+++...++....++. ..+.
T Consensus 325 -------------~pl~a----ag~~p~RL~lsP~g--~~lA~s-~gs~l~~~~se~g~~~~~~e-----------~~h~ 373 (420)
T KOG2096|consen 325 -------------APLHA----AGSEPVRLELSPSG--DSLAVS-FGSDLKVFASEDGKDYPELE-----------DIHS 373 (420)
T ss_pred -------------cchhh----cCCCceEEEeCCCC--cEEEee-cCCceEEEEcccCccchhHH-----------Hhhc
Confidence 11111 11122367788999 788766 55689999887644332222 2345
Q ss_pred CcEEEEEEecCCeEEEEEec
Q 000992 448 GSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 448 ~~v~~l~~~~d~~lla~~~~ 467 (1196)
..+.+++|+++|+++|++++
T Consensus 374 ~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CceeeEEecCCCcEEeeecc
Confidence 68999999999999999876
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-18 Score=173.87 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=205.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECC------C-----C-----eEEEeeeecCcEEEEEECCCCCEEEEEeCCc
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVD------G-----N-----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~------~-----~-----~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~ 138 (1196)
...|.+|+|+|.|..-|+|+...+.++.... . . .+..-.+|.+.|.|.+|||+|++||+++.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 3579999999999999999999999995421 1 0 1234457889999999999999999999999
Q ss_pred eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc----CCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG----DGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 139 tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp----DG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
+|+++- |+.-+...... +..|.-|++.|..++|-- -|..|| +++ .+|+.|.+-|-.+|+-
T Consensus 112 ~ik~l~--fn~dt~~~~g~--------dle~nmhdgtirdl~fld~~~s~~~il~-s~g-----agdc~iy~tdc~~g~~ 175 (350)
T KOG0641|consen 112 TIKVLP--FNADTCNATGH--------DLEFNMHDGTIRDLAFLDDPESGGAILA-SAG-----AGDCKIYITDCGRGQG 175 (350)
T ss_pred eEEEEe--cccccccccCc--------ceeeeecCCceeeeEEecCCCcCceEEE-ecC-----CCcceEEEeecCCCCc
Confidence 999974 22111111111 234557888899999954 356788 555 3688999988888998
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----c--CCCCcEEEEEEccCCCeeE
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----E--QIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~--~~~~~V~~laWSpDg~~LA 288 (1196)
.....+|.|.+-++ ++=+|-++|||+.|+ +|+||+..-.. -.-++. . -....|.+++-.|.|++||
T Consensus 176 ~~a~sghtghilal-yswn~~m~~sgsqdk------tirfwdlrv~~-~v~~l~~~~~~~glessavaav~vdpsgrll~ 247 (350)
T KOG0641|consen 176 FHALSGHTGHILAL-YSWNGAMFASGSQDK------TIRFWDLRVNS-CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA 247 (350)
T ss_pred ceeecCCcccEEEE-EEecCcEEEccCCCc------eEEEEeeeccc-eeeeccCcccCCCcccceeEEEEECCCcceee
Confidence 88888999988665 344688999999874 69999842100 000111 1 1124699999999999999
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
++-.|. ...|+|+.... ..|.+.-+..+..++.|+|..-+ +...+- +..
T Consensus 248 sg~~ds---sc~lydirg~r--~iq~f~phsadir~vrfsp~a~y-llt~sy-------------------------d~~ 296 (350)
T KOG0641|consen 248 SGHADS---SCMLYDIRGGR--MIQRFHPHSADIRCVRFSPGAHY-LLTCSY-------------------------DMK 296 (350)
T ss_pred eccCCC---ceEEEEeeCCc--eeeeeCCCccceeEEEeCCCceE-EEEecc-------------------------cce
Confidence 999998 89999988664 23433333334488999996543 222211 125
Q ss_pred EEEeeccccCC--CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 369 ILVTPLSLSLM--PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 369 l~lt~l~~~~v--pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
|++|++.+... -|.| ..-+|.+.+..+.|+|.. -.+.+.+.|.++.||.++
T Consensus 297 ikltdlqgdla~el~~~--vv~ehkdk~i~~rwh~~d--~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIM--VVAEHKDKAIQCRWHPQD--FSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeecccchhhcCceE--EEEeccCceEEEEecCcc--ceeeeccCcceEEEeccC
Confidence 67777664321 2223 223688999999999998 678899999999999764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-19 Score=201.95 Aligned_cols=300 Identities=15% Similarity=0.140 Sum_probs=199.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-----EE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-----TE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-----~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
..|.++++-|.|-.+++|+-|-+|++||.++.- .. +...-...|++++|||.|.+|..+++..+.+|.+|++-.
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 458899999999999999999999999998621 11 111112369999999999999999999999999998877
Q ss_pred eeeeecccccCccccc-cCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCc-EEEEecc-----C
Q 000992 150 LYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGT-LQASSEL-----K 221 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~-----~ 221 (1196)
+.+..-.. +.|. -..-+||...+.+-+|.|+.+ .|.| ++ .|+++||||.+.-+ ....+.+ .
T Consensus 248 ~~e~~KGD----QYI~Dm~nTKGHia~lt~g~whP~~k~~FlT-~s------~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 248 IVEFSKGD----QYIRDMYNTKGHIAELTCGCWHPDNKEEFLT-CS------YDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred eeeeeccc----hhhhhhhccCCceeeeeccccccCcccceEE-ec------CCCcEEEEecCCchhheeEEeeccCCCc
Confidence 66654221 2221 111236778889999999986 3443 33 47999999985322 2223322 2
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCC--CcEEEEEEccCCCeeEEEEccCCcce
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQID--STVELLKWNCMSDLLAAVVRFEEYDS 298 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~--~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1196)
.-.+.+++|+|||++||+|..|+ .|.+|+.-++. +-.+.++..|. ..|.+|+||+||++|++-+.|. +
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DG------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---t 387 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDG------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---T 387 (641)
T ss_pred ccCceeeecCCCcchhhhcccCC------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---c
Confidence 22468999999999999999875 59999963322 22233442222 3699999999999999999998 9
Q ss_pred EEEEEecCCEEEEEEEEEEecC-CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC--CeeEEEEcCCEEEEeecc
Q 000992 299 VKICFFSNNHWYLKYEIRYLRR-DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME--NSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~-~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d--~~~v~viDg~~l~lt~l~ 375 (1196)
+++|++.|..--|.--...... ..+.+.|||+... +..++.. +.+ .+...+-|-.++-.
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kl-i~TGtS~-------------~~~~~~g~L~f~d~~t~d~---- 449 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKL-ILTGTSA-------------PNGMTAGTLFFFDRMTLDT---- 449 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCceE-EEecccc-------------cCCCCCceEEEEeccceee----
Confidence 9999999864221100000001 1267899998754 3333320 111 11122222222110
Q ss_pred ccCCCCCceeeeecC-CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 376 LSLMPPPMYLFSLKF-PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 376 ~~~vpppm~~~~l~~-~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.+.+.. ...|..+.|+|.- +.|.+++.||++++|--.+
T Consensus 450 ---------v~ki~i~~aSvv~~~WhpkL--NQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 450 ---------VYKIDISTASVVRCLWHPKL--NQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ---------EEEecCCCceEEEEeecchh--hheeeecCCCceEEEECcc
Confidence 022222 4568899999998 7899999999999986543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-16 Score=185.71 Aligned_cols=446 Identities=13% Similarity=0.094 Sum_probs=265.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++++||...+..|..+-.++.|-.|++ ...-.+..+ +.+ -+...|-+++|+ +|..|-+++.+|.|.-
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~--~~~w~~~~v------i~g---~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNL--SNNWFLEPV------IHG---PEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEcc--CCCceeeEE------Eec---CCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 7999999999999999988999999999 443221111 221 124689999999 5667778889999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee-eeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~-~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||+.+.+.. ......+.||+++.+|-+..|+++..||.+...+-.-+.+. ...+. -..+++.++
T Consensus 95 wDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~--------------rq~sRvLsl 160 (691)
T KOG2048|consen 95 WDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM--------------RQKSRVLSL 160 (691)
T ss_pred EecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc--------------cccceEEEE
Confidence 999886543 44444578999999999999999999996655443333332 11121 123688999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--------ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--------ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--------e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+|.|+|..+| .|+ .|+.||+||...|...... +...-.++++.+=-+| .||||.. .++
T Consensus 161 sw~~~~~~i~-~Gs------~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS------~G~ 226 (691)
T KOG2048|consen 161 SWNPTGTKIA-GGS------IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS------AGT 226 (691)
T ss_pred EecCCccEEE-ecc------cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecC------Cce
Confidence 9999999898 576 4689999999888766621 1123345666666555 5676644 468
Q ss_pred EEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEEecCCcEEEEEcc
Q 000992 252 IVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 252 V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
|.||+. +|.....+.. +...|.+|+-++++..+.+++.|++ ++++-...|. .|-......+|..+..+++-.+
T Consensus 227 V~FWd~~~gTLiqS~~~---h~adVl~Lav~~~~d~vfsaGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSC---HDADVLALAVADNEDRVFSAGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred EEEEcccCcchhhhhhh---hhcceeEEEEcCCCCeEEEccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999994 4433322221 3467999999999999999999982 4444444442 2532222223333332222222
Q ss_pred CCCceEEEEecCCcEEEE--------EEE-EeeecCCCe--------eEEEEcCCEEEEeeccccCCCC---C---ceee
Q 000992 330 TKPLQLICWTLDGQITTY--------NFI-WTTAVMENS--------TALVIDGSKILVTPLSLSLMPP---P---MYLF 386 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~--------~~~-~~~~~~d~~--------~v~viDg~~l~lt~l~~~~vpp---p---m~~~ 386 (1196)
. .|..+..++.+.+. +.. -...|...- +...+-...+.+|.+. ..++. + ++..
T Consensus 302 ~---~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG-S~~~~g~~~~~~Llkl 377 (691)
T KOG2048|consen 302 N---ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLG-SVILQGEYNYIHLLKL 377 (691)
T ss_pred c---eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceecc-CcccccccChhhheee
Confidence 1 11111112111110 000 000011111 1222223333333332 12222 1 2222
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc---------c----------cccCCce--------eee
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML---------E----------DLEGTEF--------VVE 439 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~---------~----------~~~g~~~--------~~~ 439 (1196)
.+.-...|.+-+.||+| +.+|.++-. .++||.+...... . +..+... .+.
T Consensus 378 ~~k~~~nIs~~aiSPdg--~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le 454 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDG--NLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLE 454 (691)
T ss_pred ecCCccceeeeccCCCC--CEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeE
Confidence 23345678999999999 899888643 4556655420000 0 0000000 000
Q ss_pred e------------ecccc-cCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccc
Q 000992 440 A------------CISET-AFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1196)
Q Consensus 440 ~------------~~~~~-~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1196)
. ....+ ....+.+++-|++|.++|+.+.. ..+.+|++. + .
T Consensus 455 ~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~--g~I~v~nl~--~------------------~----- 507 (691)
T KOG2048|consen 455 EFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR--GQIFVYNLE--T------------------L----- 507 (691)
T ss_pred EEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc--ceEEEEEcc--c------------------c-----
Confidence 0 00001 12368899999999999987743 556666652 1 0
Q ss_pred cccccceeeeee-eccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 507 TCAGWHAKVSTQ-IPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 507 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
. .... ..++..|++...+|.+.+.+++.+.|++|+.|+.+
T Consensus 508 -----~--~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 508 -----E--SHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred -----e--eecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 0 0111 24566788888886688999999999999999764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=183.11 Aligned_cols=285 Identities=12% Similarity=0.128 Sum_probs=203.4
Q ss_pred EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+...+|++.|..+.|+|||..+|+++.|..|.+|+-..|.-.-.. .++|.+.|..+.|.+||..+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~--------------lkgHsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWV--------------LKGHSGAVMELHGMRDGSHIL 106 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceee--------------eccccceeEeeeeccCCCEEE
Confidence 345567999999999999999999999999999985554322111 126778899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
+ ++ .|++|++||.++|+.......|..-++++.=+--|. ++.|+++| .++++||.- ..+ .+.
T Consensus 107 S-~g------tDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD------~t~kl~D~R---~k~-~~~ 169 (338)
T KOG0265|consen 107 S-CG------TDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD------GTLKLWDIR---KKE-AIK 169 (338)
T ss_pred E-ec------CCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC------ceEEEEeec---ccc-hhh
Confidence 4 44 379999999999999999999999999988333343 67777776 469999942 111 111
Q ss_pred -cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEE
Q 000992 269 -EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 269 -~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
.+....+.++.|+-+|....+|+-|. .||+|+..+.+- ...+..|.+..+.+.-+|+|... ..-..+.++.
T Consensus 170 t~~~kyqltAv~f~d~s~qv~sggIdn---~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~l-lsnsMd~tvr-- 241 (338)
T KOG0265|consen 170 TFENKYQLTAVGFKDTSDQVISGGIDN---DIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFL-LSNSMDNTVR-- 241 (338)
T ss_pred ccccceeEEEEEecccccceeeccccC---ceeeeccccCcc--eEEeecccCceeeEEeccCCCcc-ccccccceEE--
Confidence 11235689999999999999999998 899999865542 34666666555888888988752 2222333333
Q ss_pred EEEEeeecC--CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 348 NFIWTTAVM--ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 348 ~~~~~~~~~--d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+|++.|- ....+.+-.|.. ..+.-+-...+|||++ +.+.+++.|..+++|+....
T Consensus 242 --vwd~rp~~p~~R~v~if~g~~-------------------hnfeknlL~cswsp~~--~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 242 --VWDVRPFAPSQRCVKIFQGHI-------------------HNFEKNLLKCSWSPNG--TKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred --EEEecccCCCCceEEEeecch-------------------hhhhhhcceeeccCCC--CccccccccceEEEeecccc
Confidence 3433311 112222222221 1123345678999999 89999999999999998764
Q ss_pred CccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 426 DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 426 ~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
..+--++ ++...|.++.|.|...++.+++.+
T Consensus 299 ~~lyklp------------Gh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 299 RILYKLP------------GHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred cEEEEcC------------CcceeEEEeeecCCCcEEEEeccC
Confidence 4432233 456789999999999998887765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.5e-18 Score=198.02 Aligned_cols=368 Identities=14% Similarity=0.089 Sum_probs=244.5
Q ss_pred cceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 21 EILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 21 ~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
+.+....|-+++-.|.++|.|+.++.|-. ..+.+-|... +-.+-.+. ..+.-.+..|+|++..+..-+..|-.+
T Consensus 268 DWV~sv~W~p~~~~LLSASaDksmiiW~p--d~~tGiWv~~-vRlGe~gg---~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADKSMIIWKP--DENTGIWVDV-VRLGEVGG---SAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cceEEEEEccchhhheecccCcceEEEec--CCccceEEEE-EEeecccc---cccceeeEEEcCCCCEEEEecccCcEE
Confidence 37888999999989999999999999999 5555544322 22111110 023467889999999998889999999
Q ss_pred EEEC-CCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-----Cceeeeeeccccc---------Ccc
Q 000992 101 LHSV-DGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELA---------EGF 162 (1196)
Q Consensus 101 lw~~-~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-----~d~~~~~~l~~~~---------~~~ 162 (1196)
+|.. +.... ...++|-++|..++|+|.|++|.++|.|.|-+++.+- |-.+..-++|..+ ..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9993 22221 2344467899999999999999999999999886542 2211111111111 011
Q ss_pred ccc---cC---------------------ccc------------------------------------------------
Q 000992 163 DVH---EP---------------------ELS------------------------------------------------ 170 (1196)
Q Consensus 163 ~Vs---~t---------------------qf~------------------------------------------------ 170 (1196)
+|| |. +|.
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 121 00 000
Q ss_pred ---------------------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 171 ---------------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 171 ---------------------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
||.-.|.+++-+|+|+++| ++.... ......|++|++.+-...+.+++|+-.|..|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliA-SaCKS~-~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIA-SACKSS-LKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEe-ehhhhC-CccceEEEEEeccchhhhheecccceEEEEEE
Confidence 7888999999999999999 443211 12456799999966666667889999999999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
|||||++|+++++|. ++.+|++......+|.+. ..|..-|++..|+||+.++|+++.|+ +|++|...+.
T Consensus 580 FSpdg~~LLsvsRDR------t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK---~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDR------TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK---KVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEEeecCc------eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc---eEEEEeccCc
Confidence 999999999999975 699999643333444322 33455699999999999999999999 9999998875
Q ss_pred E-EEEEE--EEEEecCCcEEEEEcc----CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 308 H-WYLKY--EIRYLRRDGIRFMWHP----TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 308 ~-wylkq--~l~~~~~~~~~v~Wsp----~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
. -|.++ .+.+. ...+.+.|.| +....+.++...|.+..+.+- .. +....+ |.... +.+. +
T Consensus 651 ~d~~i~~~a~~~~~-~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~--~~-~~~~~~----~~~~~--~~~l---~ 717 (764)
T KOG1063|consen 651 RDKYISRFACLKFS-LAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK--RE-HRQVTV----GTFNL--DTRL---C 717 (764)
T ss_pred hhhhhhhhchhccC-CceeeEEeeccccccccceEEEEecccEEEEEecc--cc-cccccc----eeeee--cccc---c
Confidence 1 12222 12221 1225666654 444478888888887654432 11 010000 00000 1111 2
Q ss_pred CCceeeeecCCCCEEEEEEecCC--------CCCEEEEEECCCcEEEEeCC
Q 000992 381 PPMYLFSLKFPTAVTEMAFYSKS--------SKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 381 ppm~~~~l~~~~~V~~Vafspdg--------~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+- +.+.+.|+.+.|+|.- +...||+++.|.++++++++
T Consensus 718 ~~-----~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 718 AT-----IGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cc-----cChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 22 2356778999999872 11357999999999999874
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=197.28 Aligned_cols=282 Identities=14% Similarity=0.149 Sum_probs=199.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccc-cCCC--CCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHI-DLEP--GDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+.++++|+-|-.++++|-|..+..||.. . +++.++.+ .++| +..|.+++|||.|.+|.+++..-.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-g----------Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQ-G----------MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecc-c----------ccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 68899999999999999999999999983 1 11112221 1233 467999999999999999999999
Q ss_pred EEEEECCCCeE-EE-------------eeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeee-eccccc-Cc
Q 000992 99 LLLHSVDGNAT-EV-------------VGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYEN-PLEELA-EG 161 (1196)
Q Consensus 99 I~lw~~~~~~~-e~-------------vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~-~l~~~~-~~ 161 (1196)
.+|+|.++.++ |+ .| |-..++|.+|.|+.+ .+.+++.||++++|+-+- ..... -+.+-. .+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~-~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN-TKSQLQVIKTKPAGG 315 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEecCCCcEEEEecCC-chhheeEEeeccCCC
Confidence 99999998543 22 34 567899999999964 577888999999986321 11111 111111 12
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE----EEEeccCCC--ceeEEEEcCCCC
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAF--MGAVLEWMPSGA 235 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l----~~~~e~~~~--~v~slawsPdG~ 235 (1196)
+. -.+.+.+|+|||+.|| .+. .|+.|++|+. .+.. ...-..|.+ .+.+|+||+||+
T Consensus 316 ~R----------v~~tsC~~nrdg~~iA-agc------~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 316 KR----------VPVTSCAWNRDGKLIA-AGC------LDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred cc----------cCceeeecCCCcchhh-hcc------cCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccc
Confidence 22 2467899999999999 454 5799999996 3322 223345666 789999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCC---cceEEEEEecCCE
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEE---YDSVKICFFSNNH 308 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~---~~~V~lW~~~n~~ 308 (1196)
+|+|=+.| .++++|+..--. + .|. .+....-...+||||-++|.+|.+-.. ..++.+++..++.
T Consensus 378 ~LlSRg~D------~tLKvWDLrq~k--k-pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 378 YLLSRGFD------DTLKVWDLRQFK--K-PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred hhhhccCC------Cceeeeeccccc--c-chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 99998886 469999942100 0 111 111223457999999999999886542 2278999988765
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
+++.+.++..+...+.|||.-+ ++.+++.+|...+
T Consensus 449 --~v~ki~i~~aSvv~~~WhpkLN-Qi~~gsgdG~~~v 483 (641)
T KOG0772|consen 449 --TVYKIDISTASVVRCLWHPKLN-QIFAGSGDGTAHV 483 (641)
T ss_pred --eEEEecCCCceEEEEeecchhh-heeeecCCCceEE
Confidence 5677777544447789999765 4888888887764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=182.04 Aligned_cols=321 Identities=14% Similarity=0.159 Sum_probs=231.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+-+.+.+|....+.++++|..-+.|++ .+++.. . .+.+| .+.|+++.||.||.+||+|.-+|.|++
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~--~~ge~~--~-----eltgH----KDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDI--STGEFA--G-----ELTGH----KDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEc--cCCcce--e-----EecCC----CCceEEEEEccCceEEEecCCCccEEE
Confidence 5677788897777778888888999999 666632 1 15666 579999999999999999999999999
Q ss_pred EECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|...++..+ +.+. -+.|.-+.|.|-+.+|+.|+.||.|-+|...-... . .-|.+|...+.+=
T Consensus 133 ~~~stg~~~~~~~~e-~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~--------------kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQE-VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-C--------------KVMSGHNSPCTCG 196 (399)
T ss_pred EEcccCceEEEeecc-cCceEEEEecccccEEEeecCCCcEEEEECCCcce-e--------------eEecCCCCCcccc
Confidence 999987544 4433 35688899999999999999999998886321110 0 1233666777888
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-eeEEEEcCCCCeEEEEecCCC----CCCCCeEEE
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-GAVLEWMPSGANIAAVYDRKS----ENKCPSIVF 254 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-v~slawsPdG~~IAs~s~d~~----~~~~~~V~~ 254 (1196)
.|.|||+.++ +++ .|++|++||..+|+.+......++. -+.++++-.|.++..++.+.. +.....|++
T Consensus 197 ~f~pdGKr~~-tgy------~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 197 EFIPDGKRIL-TGY------DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred cccCCCceEE-EEe------cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 8999999999 676 3699999999999888766543332 478899999999888877532 111233444
Q ss_pred EeCC-CeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 255 YERN-GLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
...+ +- .+. ......|.++.||.+=.+.|+|+-|+ +|-|||.... .+.+.. -++..++.+.|.+
T Consensus 270 ~~n~~~~-----~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~iyD~a~~--~~R~~c-~he~~V~~l~w~~- 337 (399)
T KOG0296|consen 270 CNNGTVP-----ELKPSQEELDESVESIPSSSKLPLAACGSVDG---TIAIYDLAAS--TLRHIC-EHEDGVTKLKWLN- 337 (399)
T ss_pred ecCCCCc-----cccccchhhhhhhhhcccccccchhhcccccc---eEEEEecccc--hhheec-cCCCceEEEEEcC-
Confidence 3332 11 011 11235688888999999999999999 9999998753 232222 1223348899998
Q ss_pred CCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000992 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA 409 (1196)
.+. |...+.+|.+.. |+ -|.++ +.++. +|...|.+.+.+|+. +.+.
T Consensus 338 t~~-l~t~c~~g~v~~----wD---------------------aRtG~-----l~~~y~GH~~~Il~f~ls~~~--~~vv 384 (399)
T KOG0296|consen 338 TDY-LLTACANGKVRQ----WD---------------------ARTGQ-----LKFTYTGHQMGILDFALSPQK--RLVV 384 (399)
T ss_pred cch-heeeccCceEEe----ee---------------------ccccc-----eEEEEecCchheeEEEEcCCC--cEEE
Confidence 444 566666676543 22 22111 12333 588999999999999 8999
Q ss_pred EEECCCcEEEEeCC
Q 000992 410 AILSDGCLCVVDLP 423 (1196)
Q Consensus 410 s~~~dg~v~lw~~~ 423 (1196)
+++.|++.++|+.+
T Consensus 385 T~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 385 TVSDDNTALVFEVP 398 (399)
T ss_pred EecCCCeEEEEecC
Confidence 99999999999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=182.34 Aligned_cols=321 Identities=16% Similarity=0.148 Sum_probs=222.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.+.|-+++.+|+.+.+|+|+.|..-.||+..++.. ++.| |.+.|.++.||.||.+||+|.-+|.|++|.-.-.. ..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~-~~ 141 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG-EQ 141 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEecCCCccEEEEEcccCc-eE
Confidence 47899999999999999999999999999998764 4666 69999999999999999999999999998522100 00
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
..+. +.+ +.+.=+.|.|-+.+|+ .++ .|+.+.+|...++...+++.+|.....+-.|.|
T Consensus 142 ~~~~-----~e~---------~dieWl~WHp~a~ill-AG~------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 142 WKLD-----QEV---------EDIEWLKWHPRAHILL-AGS------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred EEee-----ccc---------CceEEEEecccccEEE-eec------CCCcEEEEECCCcceeeEecCCCCCcccccccC
Confidence 1110 011 2345689999999998 465 578999999977788889999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
||++|+++..|. +|++|+. .|. ..+.+.......-..++++.+|..+..+..++ .+.+-.....+-.-
T Consensus 201 dGKr~~tgy~dg------ti~~Wn~ktg~--p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~---~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 201 DGKRILTGYDDG------TIIVWNPKTGQ--PLHKITQAEGLELPCISLNLAGSTLTKGNSEG---VACGVNNGSGKVVN 269 (399)
T ss_pred CCceEEEEecCc------eEEEEecCCCc--eeEEecccccCcCCccccccccceeEeccCCc---cEEEEccccceEEE
Confidence 999999999864 6999994 452 22334322223455788899999988888887 44443332221000
Q ss_pred E-----EEEEEecCC----cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 312 K-----YEIRYLRRD----GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 312 k-----q~l~~~~~~----~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
. -++...+.. .-++.|+..-|+ ..+...|| +|.+|++..+-+
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL-------------------------~A~G~vdG-~i~iyD~a~~~~--- 320 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPL-------------------------AACGSVDG-TIAIYDLAASTL--- 320 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccch-------------------------hhcccccc-eEEEEecccchh---
Confidence 0 000000000 011222222221 11223344 456666654321
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEE
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 462 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~ll 462 (1196)
.+..+|+..|..+-|-++ ..|++++.||+|++||.-++.+..+..|| ...|..++.+|+.+++
T Consensus 321 --R~~c~he~~V~~l~w~~t---~~l~t~c~~g~v~~wDaRtG~l~~~y~GH------------~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 321 --RHICEHEDGVTKLKWLNT---DYLLTACANGKVRQWDARTGQLKFTYTGH------------QMGILDFALSPQKRLV 383 (399)
T ss_pred --heeccCCCceEEEEEcCc---chheeeccCceEEeeeccccceEEEEecC------------chheeEEEEcCCCcEE
Confidence 134578999999999995 48899999999999999887666555554 4578999999999999
Q ss_pred EEEecCCCCceEEEE
Q 000992 463 SVSHHGPRHSNYFRG 477 (1196)
Q Consensus 463 a~~~~~~~~~~~~~~ 477 (1196)
.+++++ +...++.
T Consensus 384 vT~s~D--~~a~VF~ 396 (399)
T KOG0296|consen 384 VTVSDD--NTALVFE 396 (399)
T ss_pred EEecCC--CeEEEEe
Confidence 998886 4444443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-17 Score=184.46 Aligned_cols=270 Identities=12% Similarity=0.080 Sum_probs=170.8
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEE-EEEeCCceEEEEecc-CceeeeeecccccCcccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMTHD-WDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~V 164 (1196)
..+++++.||+|.+||..++++. .... ...+.+++|||||+.| ++++.++.|.+|+.. ...+.....+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------- 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV-GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-------- 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC-CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--------
Confidence 46788899999999999886543 3332 3457889999999987 556778899988632 2222211111
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
.....++|+|||++++ ++. ..++++++||..+++.....+. .....+++|+|+|+++++++.+.
T Consensus 73 ---------~~~~~~~~~~~g~~l~-~~~-----~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~ 136 (300)
T TIGR03866 73 ---------PDPELFALHPNGKILY-IAN-----EDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETT 136 (300)
T ss_pred ---------CCccEEEECCCCCEEE-EEc-----CCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCC
Confidence 1235789999999887 443 1367999999977777666542 23357899999999999987642
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEecCCEEEEEEEEEEecC---
Q 000992 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFSNNHWYLKYEIRYLRR--- 320 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~n~~wylkq~l~~~~~--- 320 (1196)
..+.+|+.+....-. .+.. ...+..++|+|||+.|++++ .++ .|++|+..+... ...+.+...
T Consensus 137 -----~~~~~~d~~~~~~~~-~~~~--~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~~--~~~~~~~~~~~~ 203 (300)
T TIGR03866 137 -----NMAHFIDTKTYEIVD-NVLV--DQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRKV--IKKITFEIPGVH 203 (300)
T ss_pred -----CeEEEEeCCCCeEEE-EEEc--CCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCccee--eeeeeecccccc
Confidence 346677765322111 1111 22456899999999886655 466 899999987543 122322211
Q ss_pred --C--cEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEE
Q 000992 321 --D--GIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVT 395 (1196)
Q Consensus 321 --~--~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~ 395 (1196)
. ...+.|+|++.. +.+.. .++ ++.+|+...+.+ ...+.+...+.
T Consensus 204 ~~~~~~~~i~~s~dg~~-~~~~~~~~~-------------------------~i~v~d~~~~~~-----~~~~~~~~~~~ 252 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKT-AFVALGPAN-------------------------RVAVVDAKTYEV-----LDYLLVGQRVW 252 (300)
T ss_pred cccCCccceEECCCCCE-EEEEcCCCC-------------------------eEEEEECCCCcE-----EEEEEeCCCcc
Confidence 1 134677877764 22221 122 122222211100 01122345688
Q ss_pred EEEEecCCCCCEEEEEE-CCCcEEEEeCCCCCcc
Q 000992 396 EMAFYSKSSKNCLAAIL-SDGCLCVVDLPAPDML 428 (1196)
Q Consensus 396 ~Vafspdg~~~~lAs~~-~dg~v~lw~~~~~~~~ 428 (1196)
+++|+|+| +.|+++. .+|+|.+|+..+..+.
T Consensus 253 ~~~~~~~g--~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 253 QLAFTPDE--KYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred eEEECCCC--CEEEEEcCCCCeEEEEECCCCcEE
Confidence 99999999 8888764 5899999999875443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-20 Score=195.93 Aligned_cols=270 Identities=15% Similarity=0.102 Sum_probs=183.2
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
...+.|+.|||||++|+++|-||-|-+|+- .++......... ..+|.-+++.|.+|+||.|.+++| +++
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA--------qd~fMMmd~aVlci~FSRDsEMlA-sGs- 282 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA--------QDNFMMMDDAVLCISFSRDSEMLA-SGS- 282 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh--------hcceeecccceEEEeecccHHHhh-ccC-
Confidence 567999999999999999999999999862 222211111111 124556889999999999999999 676
Q ss_pred ccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCC
Q 000992 195 CNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQID 272 (1196)
Q Consensus 195 d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~ 272 (1196)
.|++|+||...+|+++..++ .|...+.+++||.|+..|.|++.| .+|++.- +.|....+| ++ +.
T Consensus 283 -----qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD------~tvRiHGlKSGK~LKEf--rG-Hs 348 (508)
T KOG0275|consen 283 -----QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD------QTVRIHGLKSGKCLKEF--RG-HS 348 (508)
T ss_pred -----cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc------ceEEEeccccchhHHHh--cC-cc
Confidence 47999999999999999987 788889999999999999999996 4688764 344433333 23 45
Q ss_pred CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c-EEEEEccCCCceEEEEecCCcEEEEEEE
Q 000992 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
..|+...|++||..+.++++|+ +|++|+.++..+ .+++...+++ . .++.--|.+|..+.+.+.++++.+.+..
T Consensus 349 Syvn~a~ft~dG~~iisaSsDg---tvkvW~~KtteC--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDG---TVKVWHGKTTEC--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred ccccceEEcCCCCeEEEecCCc---cEEEecCcchhh--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 6799999999999999999999 999999886543 1233222222 1 5555667776656555555554443321
Q ss_pred Eee----e---------------cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEE
Q 000992 351 WTT----A---------------VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAA 410 (1196)
Q Consensus 351 ~~~----~---------------~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs 410 (1196)
-.+ . |.+.-+.++..+..+.-.....+.. -+++. |...|..++-+|.. +.||+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L-----E~tl~VhEkdvIGl~HHPHq--NllAs 496 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-----ERTLPVHEKDVIGLTHHPHQ--NLLAS 496 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce-----eeeeecccccccccccCccc--chhhh
Confidence 111 0 1111112222222221111111111 12232 56667889989988 89999
Q ss_pred EECCCcEEEEe
Q 000992 411 ILSDGCLCVVD 421 (1196)
Q Consensus 411 ~~~dg~v~lw~ 421 (1196)
.+.||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-18 Score=201.11 Aligned_cols=277 Identities=16% Similarity=0.148 Sum_probs=193.2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee-cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV-EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~-~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
+.+=+.|+ -.+.||+|. +-.|.+|+..++.+..+-.. ...|+++.|+|+|..||+|+.+|+|.+|+.. .....
T Consensus 179 Y~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~----~~k~~ 252 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK----EQKKT 252 (484)
T ss_pred hhhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh----hcccc
Confidence 45667888 445777776 44799999998876432222 7889999999999999999999999998632 11111
Q ss_pred ccccCccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCC
Q 000992 156 EELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPS 233 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPd 233 (1196)
... .+ |...|-+++|+ +..+. +++ .++.|.++|...++.... ..+|...|..++|+||
T Consensus 253 ~~~-----------~~~h~~rvg~laW~--~~~ls-sGs------r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d 312 (484)
T KOG0305|consen 253 RTL-----------RGSHASRVGSLAWN--SSVLS-SGS------RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPD 312 (484)
T ss_pred ccc-----------cCCcCceeEEEecc--CceEE-Eec------CCCcEEEEEEecchhhhhhhhcccceeeeeEECCC
Confidence 111 12 56788999999 43444 554 578999999876655444 7789999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
|+++|||+.| +.+.+|+....... +.+. .|.+.|.+++|+| .+.+||+|+... ..+|++|++.+.+- .
T Consensus 313 ~~~lASGgnD------N~~~Iwd~~~~~p~-~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~-D~~i~fwn~~~g~~--i 381 (484)
T KOG0305|consen 313 GNQLASGGND------NVVFIWDGLSPEPK-FTFT-EHTAAVKALAWCPWQSGLLATGGGSA-DRCIKFWNTNTGAR--I 381 (484)
T ss_pred CCeeccCCCc------cceEeccCCCcccc-EEEe-ccceeeeEeeeCCCccCceEEcCCCc-ccEEEEEEcCCCcE--e
Confidence 9999999886 46889997433221 2222 3467899999999 567999976432 22899999997652 1
Q ss_pred EEEEEecCCc-EEEEEccCCCceEEEEec--CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 313 YEIRYLRRDG-IRFMWHPTKPLQLICWTL--DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 313 q~l~~~~~~~-~~v~Wsp~~~~~L~~~~~--~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
+.+ ...++ ..+.|++.... |....+ .+ .|.+|.+.. ..++. .-..
T Consensus 382 ~~v--dtgsQVcsL~Wsk~~kE-i~sthG~s~n-------------------------~i~lw~~ps---~~~~~-~l~g 429 (484)
T KOG0305|consen 382 DSV--DTGSQVCSLIWSKKYKE-LLSTHGYSEN-------------------------QITLWKYPS---MKLVA-ELLG 429 (484)
T ss_pred ccc--ccCCceeeEEEcCCCCE-EEEecCCCCC-------------------------cEEEEeccc---cceee-eecC
Confidence 222 12333 78999998764 322221 11 233333211 01111 1125
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
|...|..+++|||| ..+++++.|.|+++|++-+
T Consensus 430 H~~RVl~la~SPdg--~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 430 HTSRVLYLALSPDG--ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CcceeEEEEECCCC--CEEEEecccCcEEeccccC
Confidence 89999999999999 8999999999999999865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=202.96 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=153.4
Q ss_pred EECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-Cce-eeeeecccccCccccccCc
Q 000992 93 GTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDL-LYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~-~~~~~l~~~~~~~~Vs~tq 168 (1196)
|+.+|.|++|+..... +..+..|.+.|.+++|||+ +.+||+++.|++|++|+.. ... .... . .++ ..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i--~-----~p~--~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEI--K-----DPQ--CI 120 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccc--c-----cce--EE
Confidence 5567889999976543 3344457899999999997 8999999999999998632 110 1000 0 000 12
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
+.+|...|.+++|+|+|.+++.+++ .|++|+|||..+|+...... +...+.+++|+|+|++||+++.|
T Consensus 121 L~gH~~~V~sVaf~P~g~~iLaSgS------~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D----- 188 (568)
T PTZ00420 121 LKGHKKKISIIDWNPMNYYIMCSSG------FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG----- 188 (568)
T ss_pred eecCCCcEEEEEECCCCCeEEEEEe------CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC-----
Confidence 4467788999999999987641444 47999999998888776665 45678999999999999999875
Q ss_pred CCeEEEEeC-CCeeEEEEEeccCCCC----cEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCEEEEEEEEEEecCCc
Q 000992 249 CPSIVFYER-NGLERSSFDINEQIDS----TVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 249 ~~~V~~~e~-nGl~~~~f~l~~~~~~----~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~wylkq~l~~~~~~~ 322 (1196)
..|++|+. .|....+ +..|... .++...|++|+.+|++++.++. ..+|+|||+.+..--+ +.+..+....
T Consensus 189 -~~IrIwD~Rsg~~i~t--l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl-~~~~ld~~~~ 264 (568)
T PTZ00420 189 -KHMHIIDPRKQEIASS--FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL-VTMSIDNASA 264 (568)
T ss_pred -CEEEEEECCCCcEEEE--EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-EEEEecCCcc
Confidence 46999994 4444333 3333211 1334457799999999887742 1279999988632111 1222221112
Q ss_pred -EEEEEccCCCceEEEEecCCcEEEEE
Q 000992 323 -IRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 323 -~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
..-.|+++.+..+..+.+|+.+..++
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 34567777666566666666655433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-19 Score=201.67 Aligned_cols=281 Identities=14% Similarity=0.110 Sum_probs=208.2
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCC-C-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG-N-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~-~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
...|.++.|+| .+..|.+++-||.|+||+.-+ + .+.+.-+|..+|.+++||++|..+.++|-|++|++|+ +-+
T Consensus 214 ~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD----tET 289 (503)
T KOG0282|consen 214 TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD----TET 289 (503)
T ss_pred ccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec----ccc
Confidence 35899999999 889999999999999999854 3 4456666799999999999999999999999998764 334
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
+..+.... .+....++.|.||+ +.|. +|+ .++.|+-||..+|++......|-+.+.+|.|
T Consensus 290 G~~~~~f~------------~~~~~~cvkf~pd~~n~fl-~G~------sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 290 GQVLSRFH------------LDKVPTCVKFHPDNQNIFL-VGG------SDKKIRQWDIRSGKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceEEEEEe------------cCCCceeeecCCCCCcEEE-Eec------CCCcEEEEeccchHHHHHHHhhhhheeeeEE
Confidence 33332221 01234899999999 5665 564 4789999999999988877778889999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~ 308 (1196)
-|+|+..++++++. .|++||-. +-.+. +.. .+.......|.-+|++..+|..+-|. .|-++.+.+ +.
T Consensus 351 ~~~g~rFissSDdk------s~riWe~~~~v~ik-~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~~r 419 (503)
T KOG0282|consen 351 VDEGRRFISSSDDK------SVRIWENRIPVPIK-NIA-DPEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPPFR 419 (503)
T ss_pred ccCCceEeeeccCc------cEEEEEcCCCccch-hhc-chhhccCcceecCCCCCeehhhccCc---eEEEEecccccc
Confidence 99999999999975 59999842 11111 111 11223577899999999999999998 888888654 21
Q ss_pred EEEEEEEEEecCCc--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 309 WYLKYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 309 wylkq~l~~~~~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
-..|..+..|.-.+ ..+.|||||.. |+.++.+|.+.+++|. +. ++- .
T Consensus 420 ~nkkK~feGh~vaGys~~v~fSpDG~~-l~SGdsdG~v~~wdwk--t~---------------kl~-------------~ 468 (503)
T KOG0282|consen 420 LNKKKRFEGHSVAGYSCQVDFSPDGRT-LCSGDSDGKVNFWDWK--TT---------------KLV-------------S 468 (503)
T ss_pred cCHhhhhcceeccCceeeEEEcCCCCe-EEeecCCccEEEeech--hh---------------hhh-------------h
Confidence 11223333333233 77999999975 7888878877554432 11 100 1
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
.+ .|+.++..|.|+|--. +.+|+++.||.|++|+
T Consensus 469 ~lkah~~~ci~v~wHP~e~-Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 469 KLKAHDQPCIGVDWHPVEP-SKVATCGWDGLIKIWD 503 (503)
T ss_pred ccccCCcceEEEEecCCCc-ceeEecccCceeEecC
Confidence 12 2667889999999864 7899999999999996
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=202.08 Aligned_cols=268 Identities=17% Similarity=0.264 Sum_probs=200.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
..+.++||++++.|++|+.|+.|..|+-+ .-+. .|..+. . .+..|.++ .-++..|++++.+++|..
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~--sd~e------~P~ti~---~-~g~~v~~i--a~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRKWKTN--SDEE------EPETID---I-SGELVSSI--ACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEEeecC--Cccc------CCchhh---c-cCceeEEE--eecccceEEeeccceEEE
Confidence 57889999999999999999999999973 1111 121111 0 13345555 455679999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|....++-. ++..+.-+++++++|-+|+++|.||.|-.|++.+- .|.-.+ ..+++|+..|.+++
T Consensus 81 y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~-~D~s~~--------------~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL-DDSSQE--------------KVLRGHDAPVLQLS 145 (933)
T ss_pred eeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEec-cccchh--------------eeecccCCceeeee
Confidence 999887665 67778889999999999999999999999987642 222222 22447889999999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC--------CCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--------AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~--------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+.|.|++|| |++ .+++|+|||.++|.+..++.+. ......++|+|+|..+|....+ +.|
T Consensus 146 ~~p~~~fLA-vss------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d------~~V 212 (933)
T KOG1274|consen 146 YDPKGNFLA-VSS------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD------NTV 212 (933)
T ss_pred EcCCCCEEE-EEe------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC------CeE
Confidence 999999999 676 3689999999999888776543 2345788999997766666654 579
Q ss_pred EEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCC
Q 000992 253 VFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1196)
++|.++|+.+ +|.|+.. ....+..++|||.|++||++.-++ .|-+|++.. |- . ++. ...+.+.+|.|+.
T Consensus 213 kvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g---~I~vWnv~t-~~-~-~~~---~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 213 KVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG---QILVWNVDT-HE-R-HEF---KRAVCCEAWKPNA 282 (933)
T ss_pred EEEccCCcee-heeecccccccceEEEEEcCCCcEEeeeccCC---cEEEEeccc-ch-h-ccc---cceeEEEecCCCC
Confidence 9999999876 4778733 233488999999999999999999 899999986 31 1 111 1123779999998
Q ss_pred CceEEEEecCC
Q 000992 332 PLQLICWTLDG 342 (1196)
Q Consensus 332 ~~~L~~~~~~g 342 (1196)
+. +.+.+..|
T Consensus 283 n~-it~~~~~g 292 (933)
T KOG1274|consen 283 NA-ITLITALG 292 (933)
T ss_pred Ce-eEEEeecc
Confidence 74 44444334
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=181.08 Aligned_cols=282 Identities=10% Similarity=0.036 Sum_probs=207.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.++|.+|++-|-.+.+|+++.|++|+|||+.+|++. .+..|-..|..+++|+---+|.+++.|++|+.|+...+ .
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----k 226 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----K 226 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh----h
Confidence 378999999999999999999999999999999876 44446788999999999999999999999998764322 1
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
-+. .+++|-.+|.+++-.|-=..|+ .++ .|.++||||..+-....++.+|...|.++.+.|-
T Consensus 227 vIR-----------~YhGHlS~V~~L~lhPTldvl~-t~g------rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 227 VIR-----------HYHGHLSGVYCLDLHPTLDVLV-TGG------RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred hHH-----------HhccccceeEEEeccccceeEE-ecC------CcceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 111 1336667899999999999999 454 4799999999899999999999999999999997
Q ss_pred CCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
.-.|.++|.|. +|+||+ ++|..-- ++. ++...|.+++.+|.-...|+++.|. |+-|++..... -
T Consensus 289 dpqvit~S~D~------tvrlWDl~agkt~~--tlt-~hkksvral~lhP~e~~fASas~dn----ik~w~~p~g~f--~ 353 (460)
T KOG0285|consen 289 DPQVITGSHDS------TVRLWDLRAGKTMI--TLT-HHKKSVRALCLHPKENLFASASPDN----IKQWKLPEGEF--L 353 (460)
T ss_pred CCceEEecCCc------eEEEeeeccCceeE--eee-cccceeeEEecCCchhhhhccCCcc----ceeccCCccch--h
Confidence 77888999875 699999 5664422 233 3345799999999999999999997 99998875432 1
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc-------cCCCCCcee
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-------SLMPPPMYL 385 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-------~~vpppm~~ 385 (1196)
+.+..+...+..+.=..|+ .+..+..+|. +..|+++. .-++.|-+
T Consensus 354 ~nlsgh~~iintl~~nsD~--v~~~G~dng~-------------------------~~fwdwksg~nyQ~~~t~vqpGS- 405 (460)
T KOG0285|consen 354 QNLSGHNAIINTLSVNSDG--VLVSGGDNGS-------------------------IMFWDWKSGHNYQRGQTIVQPGS- 405 (460)
T ss_pred hccccccceeeeeeeccCc--eEEEcCCceE-------------------------EEEEecCcCcccccccccccCCc-
Confidence 2232221111222222222 1222222333 33333221 11223322
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+.....|.+-+|-..| ..|.++..|.+|++|.-+..
T Consensus 406 --l~sEagI~as~fDktg--~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 406 --LESEAGIFASCFDKTG--SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred --cccccceeEEeecccC--ceEEeccCCcceEEEecccc
Confidence 3445678899999999 89999999999999998753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.3e-19 Score=182.34 Aligned_cols=278 Identities=17% Similarity=0.172 Sum_probs=207.0
Q ss_pred CCEEEEEEcc---CCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLM---EKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~sp---d~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
..|+.++||| +|-.|++|+.||.=.|-+-+||.. -+...|.+.|++...+.+...-|+++.|-+-++ |+.++
T Consensus 15 rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv----w~a~t 90 (334)
T KOG0278|consen 15 RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV----WDAVT 90 (334)
T ss_pred cceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh----hhhhh
Confidence 4689999986 788999999999999988888764 355567999999999999999999999988866 55666
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaw 230 (1196)
+-.++... |..-|..++|+.|.++|. .++ .++.+||||.+.- .......+|.+.|..+-|
T Consensus 91 gdelhsf~------------hkhivk~~af~~ds~~ll-tgg------~ekllrvfdln~p~App~E~~ghtg~Ir~v~w 151 (334)
T KOG0278|consen 91 GDELHSFE------------HKHIVKAVAFSQDSNYLL-TGG------QEKLLRVFDLNRPKAPPKEISGHTGGIRTVLW 151 (334)
T ss_pred hhhhhhhh------------hhheeeeEEecccchhhh-ccc------hHHHhhhhhccCCCCCchhhcCCCCcceeEEE
Confidence 66666553 344578999999999999 565 3588999998432 233345678999999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
.-.-+.|.|+++++ +|++|+ +.|.+...+.++ ..|.++..|+||++|.++... +|++|+.++..-
T Consensus 152 c~eD~~iLSSadd~------tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~~ 217 (334)
T KOG0278|consen 152 CHEDKCILSSADDK------TVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFGL 217 (334)
T ss_pred eccCceEEeeccCC------ceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEEecCc----eeEEeccccccc
Confidence 99999999987764 699999 567665543332 358999999999999998765 499999998652
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
|| +...+ ..+.+.+-+|++. .+..+..++.+..+++. + |..+-. +.-+
T Consensus 218 -lK-s~k~P-~nV~SASL~P~k~-~fVaGged~~~~kfDy~--T------------geEi~~--------------~nkg 265 (334)
T KOG0278|consen 218 -LK-SYKMP-CNVESASLHPKKE-FFVAGGEDFKVYKFDYN--T------------GEEIGS--------------YNKG 265 (334)
T ss_pred -ee-eccCc-cccccccccCCCc-eEEecCcceEEEEEecc--C------------Cceeee--------------cccC
Confidence 22 22221 2335677899884 34554444433333322 1 111110 1124
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
|.++|.+|.||||| ...|+++.||+|+||+...
T Consensus 266 h~gpVhcVrFSPdG--E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 266 HFGPVHCVRFSPDG--ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CCCceEEEEECCCC--ceeeccCCCceEEEEEecC
Confidence 88999999999999 8999999999999999864
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=175.90 Aligned_cols=239 Identities=16% Similarity=0.127 Sum_probs=181.5
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+..++||+- .|.+++++.+..|..||. .+.+-...+. ..+.=..+.|+|+|+++|++..|..|.
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~--r~~k~~~~i~------------~~~eni~i~wsp~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDI--RSGKCTARIE------------TKGENINITWSPDGEYIAVGNKDDRIT 131 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEe--ccCcEEEEee------------ccCcceEEEEcCCCCEEEEecCcccEE
Confidence 5677788854 688888899999999998 4443212221 123456789999999999999999999
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
..|..+.++.......-.+.-++|+-++.+....++.|+|.+++ ..-+++..+. +|.....+|
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~----------------AH~snCicI 195 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK----------------AHPSNCICI 195 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccc----------------cCCcceEEE
Confidence 99988765543333455688899999999999999999998875 2223332222 556678999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
.|+|||+||| +|+. |..+-+||.++-.+..++..++-+|..|+||-||++|||+|.|. -.+|..- ..|
T Consensus 196 ~f~p~GryfA-~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~v-etG 263 (313)
T KOG1407|consen 196 EFDPDGRYFA-TGSA------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEV-ETG 263 (313)
T ss_pred EECCCCceEe-eccc------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEec-ccC
Confidence 9999999999 7874 57899999988888898888999999999999999999999874 2333322 345
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc------ceEEEEEecC
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY------DSVKICFFSN 306 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~------~~V~lW~~~n 306 (1196)
.+.-+. +.++..+.|||+|..-+||-++.|..+ .+|+|+-..|
T Consensus 264 d~~~eI----~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 264 DRVWEI----PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred CeEEEe----eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 544332 345668899999999999999998754 3777775543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-15 Score=170.10 Aligned_cols=413 Identities=13% Similarity=0.077 Sum_probs=273.6
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--------E
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--------L 99 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~--------I 99 (1196)
+=+-++.||++..-..++-|.- ..+.. ..+| ++.|.+++.+||--.+++|-..|+ |
T Consensus 73 ~lptgE~vyfvA~V~Vl~n~ee--~~Qr~----------y~GH----~ddikc~~vHPdri~vatGQ~ag~~g~~~~phv 136 (626)
T KOG2106|consen 73 LLPTGELVYFVAAVGVLYNWEE--RSQRH----------YLGH----NDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHV 136 (626)
T ss_pred EccCccEEEEeccEEEEEeehh--hhccc----------ccCC----CCceEEEeecCCceeeccCcccccCCCcCCCee
Confidence 4466788888876655665543 11111 2223 568999999999888887766664 8
Q ss_pred EEEECCC-CeEEEeeeecCcEEEEEECCC--CCEEEEEe--CCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDG-NATEVVGRVEGGVRFISPSPD--GDLLGVTT--GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~-~~~e~vg~~~~~I~~~awSPD--g~~LA~~s--~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++||..+ ..+.++|..+.||.|++||+- |.+|+... .+..+.+|+..|. ..+.+-. ...+
T Consensus 137 riWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~----~~~~~vk-----------~sne 201 (626)
T KOG2106|consen 137 RIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK----AKLGPVK-----------TSNE 201 (626)
T ss_pred eecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhh----hccCcce-----------eccc
Confidence 9999766 345678888999999999984 45555553 3444556543322 1111110 1124
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE---eccCC-CceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKA-FMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~---~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
.+....|.|-+.-+. +.. +.+.+..|+++.|.+... ++.++ ..|.+++|.|+|..|..=| ..
T Consensus 202 ~v~~a~FHPtd~nli-it~------Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS-------~G 267 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLI-ITC------GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDS-------GG 267 (626)
T ss_pred eEEEEEeccCCCcEE-EEe------CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecC-------Cc
Confidence 567889999888776 554 468999999977766553 44432 5689999999999775432 35
Q ss_pred eEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 251 SIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 251 ~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
.|.+|.+.|.+...-.. .|++.|.+|+---||++|. |+.|+ .|-+|+ .||.- .+++..+...+....--+.
T Consensus 268 ~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllS-GgKDR---ki~~Wd-~~y~k--~r~~elPe~~G~iRtv~e~ 338 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLS-GGKDR---KIILWD-DNYRK--LRETELPEQFGPIRTVAEG 338 (626)
T ss_pred eEEEEeCCCceEEeEee--ecCCceEEEEEecCccEee-cCccc---eEEecc-ccccc--cccccCchhcCCeeEEecC
Confidence 79999997766543222 3467899999999999888 99999 899999 77653 2344444332211111133
Q ss_pred CCceEEEEecCCcEEE--------------EEEEEeee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 331 KPLQLICWTLDGQITT--------------YNFIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~--------------~~~~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
++- |.+++..+.+.. .+-.|..+ |++...+.....+++.+|. ....+ ++.....++
T Consensus 339 ~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~------wt~~~~d~~ 410 (626)
T KOG2106|consen 339 KGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLE------WTKIIEDPA 410 (626)
T ss_pred CCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCcee------EEEEecCce
Confidence 332 566665443332 11234444 6666666667777888887 22211 444567889
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1196)
.+++|.|.| .+|+++..|...+.+.++..... +. .....+.-+.|+|+|.+||+++.+ +.+.
T Consensus 411 ~~~~fhpsg---~va~Gt~~G~w~V~d~e~~~lv~--------~~-----~d~~~ls~v~ysp~G~~lAvgs~d--~~iy 472 (626)
T KOG2106|consen 411 ECADFHPSG---VVAVGTATGRWFVLDTETQDLVT--------IH-----TDNEQLSVVRYSPDGAFLAVGSHD--NHIY 472 (626)
T ss_pred eEeeccCcc---eEEEeeccceEEEEecccceeEE--------EE-----ecCCceEEEEEcCCCCEEEEecCC--CeEE
Confidence 999999998 99999999999999988643331 10 113468888999999999999986 6777
Q ss_pred EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEE
Q 000992 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1196)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~ 550 (1196)
++.+.-+| .++........ ++|+.+-+|+ |++.+.-++.|=.++.|
T Consensus 473 iy~Vs~~g----------------------------~~y~r~~k~~g-s~ithLDwS~-Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 473 IYRVSANG----------------------------RKYSRVGKCSG-SPITHLDWSS-DSQFLVSNSGDYEILYW 518 (626)
T ss_pred EEEECCCC----------------------------cEEEEeeeecC-ceeEEeeecC-CCceEEeccCceEEEEE
Confidence 88775433 22322222222 7889999988 88888888888888888
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=196.53 Aligned_cols=265 Identities=9% Similarity=0.068 Sum_probs=176.5
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc----------------c-----c----------
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE----------------L-----A---------- 159 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~----------------~-----~---------- 159 (1196)
+-+.|++.|+++.|||||++||+|+.|+.|+||.-.-++........ . .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 34478999999999999999999999999999863321111000000 0 0
Q ss_pred --C--cccc-------ccCc---cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 160 --E--GFDV-------HEPE---LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 160 --~--~~~V-------s~tq---f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
+ ...+ +++- |.||.+.|..|+||-++ +|. +++ -|+|||+|++..-+++.++. |...|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLL-SSS------MDKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLL-SSS------MDKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeE-ecc------ccccEEeecCCCcceeeEEe-cCCee
Confidence 0 0000 0222 33899999999999888 455 355 37999999998889999998 78889
Q ss_pred eEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
++|+|+| |-+++.||+-| ..|++|..-..+.-.+ ..-..-|.+++|+|||+...+|+-+| ..+++++
T Consensus 413 TcVaFnPvDDryFiSGSLD------~KvRiWsI~d~~Vv~W---~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t 480 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLD------GKVRLWSISDKKVVDW---NDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDT 480 (712)
T ss_pred EEEEecccCCCcEeecccc------cceEEeecCcCeeEee---hhhhhhheeEEeccCCceEEEEEecc---EEEEEEc
Confidence 9999999 67899999986 5799998644332211 11124699999999999999999999 8999999
Q ss_pred cCCEEEEEEEEEEecC-----C-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 305 SNNHWYLKYEIRYLRR-----D-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~-----~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
.+...-....+..+.. . ++.+.+.|..+..+.+.+.|. +|+|.+.+...
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS-------------------------rIRI~d~~~~~ 535 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS-------------------------RIRIYDGRDKD 535 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC-------------------------ceEEEeccchh
Confidence 8865444444443321 1 145556555554344433333 34444332111
Q ss_pred CCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 379 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 379 vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+- +-++-..-...=....|++|| +.|++++.|..|++|+.+..
T Consensus 536 lv--~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 536 LV--HKFKGFRNTSSQISASFSSDG--KHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred hh--hhhcccccCCcceeeeEccCC--CEEEEeecCceEEEEeCCCC
Confidence 10 000001111222467899999 99999999999999998753
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=192.74 Aligned_cols=278 Identities=12% Similarity=0.094 Sum_probs=201.9
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++-|-+ -+-.+.+++-|+.|+.|++ ..... -+.| +.+| ...|.++.|+.+|..+.+++-|+.|+
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~v--y~~~~--~lrt----f~gH----~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNV--YDDRR--CLRT----FKGH----RKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEE--ecCcc--eehh----hhcc----hhhhhhhhccccCCeeeeeecceeee
Confidence 455555666 5677778888999999999 44211 1111 3344 35799999999999999999999999
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+||.+||++..-.+.+..+.|+.|.||+ +++.+|+.|+.|+.|+ |..+.+.+..- |-..+..
T Consensus 284 lwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~----------------hLg~i~~ 347 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR----------------HLGAILD 347 (503)
T ss_pred eeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh----------------hhhheee
Confidence 9999999987666556779999999999 7888888999998876 55555444321 2246789
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
|.|.++|++|+ +++ .++++|||+-..+..++. ..+......+++-+|+|+.+|.=+-+ +.|.+|+.
T Consensus 348 i~F~~~g~rFi-ssS------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d------N~i~ifs~ 414 (503)
T KOG0282|consen 348 ITFVDEGRRFI-SSS------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD------NYIAIFST 414 (503)
T ss_pred eEEccCCceEe-eec------cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC------ceEEEEec
Confidence 99999999999 565 468999999877766553 33333445799999999999987764 46888874
Q ss_pred CCeeEE--EEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 258 NGLERS--SFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 258 nGl~~~--~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
+-.-.. .-.+.++. .+--..+.|||||.+|++|..++ .+.+|++++-.- -..+..+ +.. +.+.|||..+.
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~kl--~~~lkah-~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG---KVNFWDWKTTKL--VSKLKAH-DQPCIGVDWHPVEPS 488 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc---cEEEeechhhhh--hhccccC-CcceEEEEecCCCcc
Confidence 321100 00011221 24466899999999999999999 899999986432 1233333 233 88999999988
Q ss_pred eEEEEecCCcEEE
Q 000992 334 QLICWTLDGQITT 346 (1196)
Q Consensus 334 ~L~~~~~~g~~~~ 346 (1196)
.++....+|.+.+
T Consensus 489 kvat~~w~G~Iki 501 (503)
T KOG0282|consen 489 KVATCGWDGLIKI 501 (503)
T ss_pred eeEecccCceeEe
Confidence 7777777777653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-15 Score=176.61 Aligned_cols=368 Identities=16% Similarity=0.125 Sum_probs=227.1
Q ss_pred ccccCccc-ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000992 14 LELQSKDE-ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 14 ~~~~~~~~-~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~ 92 (1196)
+.+..+.+ .+.++||- ++..||+++-++.|.+||+ .+.+-..+ +. ..++.|++|+.+|.+..+++
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl--~~lk~~~~-------~d----~~gg~IWsiai~p~~~~l~I 127 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL--HTLKQKYN-------ID----SNGGAIWSIAINPENTILAI 127 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec--ccCceeEE-------ec----CCCcceeEEEeCCccceEEe
Confidence 34444333 78899997 8999999999999999999 55543111 11 11678999999999999999
Q ss_pred EECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCc
Q 000992 93 GTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
+.+||-+...+...++++ .++...+.|.+++|+|+|..||.|+.||.|++|+ +..+.+.-.......-++
T Consensus 128 gcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k------ 201 (691)
T KOG2048|consen 128 GCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSK------ 201 (691)
T ss_pred ecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccccc------
Confidence 999997777777777775 5676678999999999999999999999998876 222222211111111000
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
....-||++.+=.||. +| ++ +..++|++||...|.+.....-|++.+.+++-.++++++.+++.|+
T Consensus 202 --~~~~iVWSv~~Lrd~t-I~-sg------DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~---- 267 (691)
T KOG2048|consen 202 --REPTIVWSVLFLRDST-IA-SG------DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP---- 267 (691)
T ss_pred --CCceEEEEEEEeecCc-EE-Ee------cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC----
Confidence 0112357777778885 45 23 2468999999999999998888999999999999999999999874
Q ss_pred CCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCC------------------------------
Q 000992 249 CPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEE------------------------------ 295 (1196)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~------------------------------ 295 (1196)
..+.+.. +|... ++... ..+...|.+++-.++ .|.+|+.|..
T Consensus 268 -~ii~~~~-~~~~~-~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~ 342 (691)
T KOG2048|consen 268 -KIIQYSL-TTNKS-EWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP 342 (691)
T ss_pred -ceEEEEe-cCCcc-ceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc
Confidence 2344433 22211 12211 223345778887776 6666666640
Q ss_pred ---------cceEEEEEecCC--------EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee----
Q 000992 296 ---------YDSVKICFFSNN--------HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---- 354 (1196)
Q Consensus 296 ---------~~~V~lW~~~n~--------~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~---- 354 (1196)
.+.+.+|.++.. ...+|-.+.- .+...+.+-+|++.. +++.+-. ...+|....+..
T Consensus 343 ~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~-~~nIs~~aiSPdg~~-Ia~st~~-~~~iy~L~~~~~vk~~ 419 (691)
T KOG2048|consen 343 ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE-KENISCAAISPDGNL-IAISTVS-RTKIYRLQPDPNVKVI 419 (691)
T ss_pred cceEEEEeccccccceeccCcccccccChhhheeeecCC-ccceeeeccCCCCCE-EEEeecc-ceEEEEeccCcceeEE
Confidence 113334443321 1011110000 001134455566543 4443321 122222222100
Q ss_pred ---------cCCCeeEEEEcCCEEEEeeccccC-----CCCCce--eeeec---CCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 355 ---------VMENSTALVIDGSKILVTPLSLSL-----MPPPMY--LFSLK---FPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 355 ---------~~d~~~v~viDg~~l~lt~l~~~~-----vpppm~--~~~l~---~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
-+-..++..+|++.+.+-+..... ...|.. ...+. .-..|..++-||+| +.||+++.+|
T Consensus 420 ~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG--~yiaa~~t~g 497 (691)
T KOG2048|consen 420 NVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDG--NYIAAISTRG 497 (691)
T ss_pred EeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCC--CEEEEEeccc
Confidence 011234566788877666522110 011111 00010 12468899999999 9999999999
Q ss_pred cEEEEeCCCC
Q 000992 416 CLCVVDLPAP 425 (1196)
Q Consensus 416 ~v~lw~~~~~ 425 (1196)
.|.+|++.+.
T Consensus 498 ~I~v~nl~~~ 507 (691)
T KOG2048|consen 498 QIFVYNLETL 507 (691)
T ss_pred eEEEEEcccc
Confidence 9999999863
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=174.38 Aligned_cols=250 Identities=18% Similarity=0.221 Sum_probs=184.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+-....|--+..|..||.|+.|...... ++ ++.+ +-.+|++| .+.|.-++|.. -|..||+++-||.|
T Consensus 13 ~IHda~lDyygkrlATcsSD~tVkIf~v~--~n-~~s~---ll~~L~Gh----~GPVwqv~wahPk~G~iLAScsYDgkV 82 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSDGTVKIFEVR--NN-GQSK---LLAELTGH----SGPVWKVAWAHPKFGTILASCSYDGKV 82 (299)
T ss_pred hhhHhhhhhhcceeeeecCCccEEEEEEc--CC-CCce---eeeEecCC----CCCeeEEeecccccCcEeeEeecCceE
Confidence 45556667778999999999977766662 21 1111 22237777 57899999976 79999999999999
Q ss_pred EEEECCCCeEE---EeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNATE---VVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~~e---~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+||...+++.. ....|+..|++++|-|. |=+||.++.||+|.+.+-+-+ +...+...+..|.-
T Consensus 83 IiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~------------g~w~t~ki~~aH~~ 150 (299)
T KOG1332|consen 83 IIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS------------GGWTTSKIVFAHEI 150 (299)
T ss_pred EEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC------------CCccchhhhhcccc
Confidence 99999887543 44557899999999998 558999999999988753211 00111112335667
Q ss_pred CeEEEEEccC---C-----------ceEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCCC----
Q 000992 175 FKSPISWRGD---G-----------KYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSG---- 234 (1196)
Q Consensus 175 ~v~~isWspD---G-----------~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPdG---- 234 (1196)
++.+++|.|- | +.|| +++ -|..|+||.-++| ++..++++|.++++.+||.|.-
T Consensus 151 GvnsVswapa~~~g~~~~~~~~~~~krlv-SgG------cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~ 223 (299)
T KOG1332|consen 151 GVNSVSWAPASAPGSLVDQGPAAKVKRLV-SGG------CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPK 223 (299)
T ss_pred ccceeeecCcCCCccccccCcccccceee-ccC------CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCc
Confidence 8999999997 6 4577 454 4789999998555 4566789999999999999986
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWY 310 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wy 310 (1196)
..|||++.|+ +|.+|..+.. ..++. +-.+....++.++||+.|.+||+++.|. .|.+|--+ +++|.
T Consensus 224 s~iAS~SqDg------~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 224 STIASCSQDG------TVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKENVDGKWE 292 (299)
T ss_pred eeeEEecCCC------cEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEeCCCCcEE
Confidence 3799999975 5999987632 22222 2122235699999999999999999998 89999876 45663
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-15 Score=169.92 Aligned_cols=393 Identities=15% Similarity=0.153 Sum_probs=248.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
-+....|-|-...|.+....+.++.|++ ..+.. .+-. ++.+-+. ...|.++.|.++|+.+ +|-++|+|.|
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~--~~~~l-~k~~----~~fek~e--kk~Vl~v~F~engdvi-TgDS~G~i~I 271 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTL--RGGSL-VKRQ----GIFEKRE--KKFVLCVTFLENGDVI-TGDSGGNILI 271 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEc--cCCce-EEEe----ecccccc--ceEEEEEEEcCCCCEE-eecCCceEEE
Confidence 4566677766655666555556999998 33322 1111 1111111 2579999999999864 7899999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc-------Cc--c-ccc-----
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-------EG--F-DVH----- 165 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~-------~~--~-~Vs----- 165 (1196)
|+..+.++. .+-.|++||.+++---||.+|- ++.|..|..|+.+...+.++.+...- +. . .|.
T Consensus 272 w~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 272 WSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred EeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 999987763 3348999999999999998876 99999999999777777776654432 11 0 110
Q ss_pred ------cCccc----cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 166 ------EPELS----SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 166 ------~tqf~----~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
+..|. +|.+..+.++-.|+...|+| ++ .|+++++|+ .-++..+-. ......++.|.|.|
T Consensus 351 iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T-~g------qdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg- 419 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLT-CG------QDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG- 419 (626)
T ss_pred EEEeeecCCceEEEEecccceeeEEcCCChhheee-cc------CcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-
Confidence 22222 78889999999999999995 54 479999999 344554432 45567899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CEEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYE 314 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~ 314 (1196)
.||.|..-+ ...+.+.. .+.-.+++.. ...+..++|||||.+||+++.|. .|.|+.++. ..-|-+-
T Consensus 420 ~va~Gt~~G------~w~V~d~e--~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~---~iyiy~Vs~~g~~y~r~- 486 (626)
T KOG2106|consen 420 VVAVGTATG------RWFVLDTE--TQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDN---HIYIYRVSANGRKYSRV- 486 (626)
T ss_pred eEEEeeccc------eEEEEecc--cceeEEEEec-CCceEEEEEcCCCCEEEEecCCC---eEEEEEECCCCcEEEEe-
Confidence 888876532 23333322 1222334433 45799999999999999999999 899999874 3323221
Q ss_pred EEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee--cCC
Q 000992 315 IRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL--KFP 391 (1196)
Q Consensus 315 l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l--~~~ 391 (1196)
-..+. +. +.+.||+|+.. |+.- +|.+.+. -|........ ..+ +.+++..-. .. +-+... .+.
T Consensus 487 ~k~~g-s~ithLDwS~Ds~~-~~~~--S~d~eiL--yW~~~~~~~~-ts~---kDvkW~t~~-c~----lGF~v~g~s~~ 551 (626)
T KOG2106|consen 487 GKCSG-SPITHLDWSSDSQF-LVSN--SGDYEIL--YWKPSECKQI-TSV---KDVKWATYT-CT----LGFEVFGGSDG 551 (626)
T ss_pred eeecC-ceeEEeeecCCCce-EEec--cCceEEE--EEccccCccc-cee---cceeeeeeE-EE----EEEEEecccCC
Confidence 11222 33 88999999875 3333 3444433 3422211111 011 111111100 00 000111 134
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCC
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRH 471 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~ 471 (1196)
..|+.++-|.+. +++|++...|+|+||..+-.... ..-++. ..+..-|.+++|+.++..+.+...+ .
T Consensus 552 t~i~a~~rs~~~--~~lA~gdd~g~v~lf~yPc~s~r--A~~he~-------~ghs~~vt~V~Fl~~d~~li~tg~D--~ 618 (626)
T KOG2106|consen 552 TDINAVARSHCE--KLLASGDDFGKVHLFSYPCSSPR--APSHEY-------GGHSSHVTNVAFLCKDSHLISTGKD--T 618 (626)
T ss_pred chHHHhhhhhhh--hhhhccccCceEEEEccccCCCc--ccceee-------ccccceeEEEEEeeCCceEEecCCC--c
Confidence 557788888888 89999999999999998632111 111111 2455679999999888766554432 5
Q ss_pred ceEEEE
Q 000992 472 SNYFRG 477 (1196)
Q Consensus 472 ~~~~~~ 477 (1196)
++..|.
T Consensus 619 Si~qW~ 624 (626)
T KOG2106|consen 619 SIMQWR 624 (626)
T ss_pred eEEEEE
Confidence 555554
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=171.67 Aligned_cols=256 Identities=9% Similarity=0.026 Sum_probs=162.6
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcEEEEECCCCeEE-
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG~I~lw~~~~~~~e- 110 (1196)
+.+++.+.++.++.||. .+++. +.+ +.. ...+.+++|+|||+.+ ++++.++.|++||..+++..
T Consensus 2 ~~~~s~~~d~~v~~~d~--~t~~~---~~~----~~~-----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT--ATLEV---TRT----FPV-----GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG 67 (300)
T ss_pred cEEEEecCCCEEEEEEC--CCCce---EEE----EEC-----CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 34556677889999998 44432 111 111 2346789999999977 56678899999999886543
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+.. ...+..++|+|||+.|++++ .+++|.+|+.. ...+..... ......++|+|||+++
T Consensus 68 ~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 68 TLPS-GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------------GVEPEGMAVSPDGKIV 129 (300)
T ss_pred eccC-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------------CCCcceEEECCCCCEE
Confidence 2322 23467899999999887664 57899888632 222221111 1124679999999999
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEe
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDI 267 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l 267 (1196)
+ +++. ....+.+||..++++..... .......++|+|+|++++.++.. ...|.+|+... .....+.+
T Consensus 130 ~-~~~~-----~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 130 V-NTSE-----TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEI-----GGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred E-EEec-----CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCC-----CCEEEEEEcCcceeeeeeee
Confidence 9 5542 23568889997777765443 23344789999999988655432 24699999653 32232222
Q ss_pred ccC----CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 268 NEQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 268 ~~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
..+ .......++|||||+.+.++..+. +.|.+|+..+++- ...+. .......+.|+|++.. |++.
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~g~~-l~~~ 266 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEV--LDYLL-VGQRVWQLAFTPDEKY-LLTT 266 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcE--EEEEE-eCCCcceEEECCCCCE-EEEE
Confidence 211 111245799999999866654322 2699999987542 22222 1223377899998875 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=178.14 Aligned_cols=281 Identities=12% Similarity=0.131 Sum_probs=205.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+..|.||++.|.++|-|+.|-.|+. .+++.... |.... ...|. -.+.|.++.||.|+++||+|+.||.|+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny--~~GKlrKD---LkYQA-qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNY--TTGKLRKD---LKYQA-QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehh--ccchhhhh---hhhhh-hcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 5677889999999999999999999998 66654211 11110 01111 147899999999999999999999999
Q ss_pred EEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+|...+|.+- .-..|..||+|++||.|+..+.+++-|.+|++-. ..++..+. .|++|...|..
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHG----lKSGK~LK-----------EfrGHsSyvn~ 353 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHG----LKSGKCLK-----------EFRGHSSYVNE 353 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEec----cccchhHH-----------HhcCccccccc
Confidence 9999998763 3336889999999999999999999999997632 12222322 35688888999
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|++||.++. +++ .|++||||+..++++++++.+ .+..+.++-.=|.. ..+..+.+ .++|.+.
T Consensus 354 a~ft~dG~~ii-saS------sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr------sntv~im 420 (508)
T KOG0275|consen 354 ATFTDDGHHII-SAS------SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR------SNTVYIM 420 (508)
T ss_pred eEEcCCCCeEE-Eec------CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC------CCeEEEE
Confidence 99999999999 454 379999999999999999875 44567777766654 35555555 3578888
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
+..|.....|.--....+.-.+.+.||-|+.+-..+.|+ .+.-+.+..+. |...+..+..++..+.-||-.+. |
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~---vlYCF~~~sG~--LE~tl~VhEkdvIGl~HHPHqNl-l 494 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG---VLYCFSVLSGK--LERTLPVHEKDVIGLTHHPHQNL-L 494 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---EEEEEEeecCc--eeeeeecccccccccccCcccch-h
Confidence 888877766643222234566778999999999999998 66666665543 44566666555555666765443 4
Q ss_pred EEEecCC
Q 000992 336 ICWTLDG 342 (1196)
Q Consensus 336 ~~~~~~g 342 (1196)
+..+.||
T Consensus 495 AsYsEDg 501 (508)
T KOG0275|consen 495 ASYSEDG 501 (508)
T ss_pred hhhcccc
Confidence 4444444
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=172.00 Aligned_cols=254 Identities=18% Similarity=0.234 Sum_probs=184.0
Q ss_pred eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc--CCceEEE
Q 000992 113 GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFAT 190 (1196)
Q Consensus 113 g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lAs 190 (1196)
..|++-|..+...-=|+.||+++.|++|+++...-+.- ...+.. ..+|.+.++.++|-- -|.+||
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-s~ll~~-----------L~Gh~GPVwqv~wahPk~G~iLA- 74 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-SKLLAE-----------LTGHSGPVWKVAWAHPKFGTILA- 74 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-ceeeeE-----------ecCCCCCeeEEeecccccCcEee-
Confidence 34677888888888899999999999998875322111 011111 227788899999987 899999
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEe--ccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeC--C-CeeEE
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYER--N-GLERS 263 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~--n-Gl~~~ 263 (1196)
+++. |++|-||.-++|+-.... ..|++.+++|+|.|. |-+||+++.|+ +|.+++- + |....
T Consensus 75 ScsY------DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG------~vsvl~~~~~g~w~t~ 142 (299)
T KOG1332|consen 75 SCSY------DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG------KVSVLTYDSSGGWTTS 142 (299)
T ss_pred Eeec------CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC------cEEEEEEcCCCCccch
Confidence 4553 689999999777544433 458889999999997 56899999875 4666653 3 22211
Q ss_pred EEEeccCCCCcEEEEEEccC---C-----------CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 264 SFDINEQIDSTVELLKWNCM---S-----------DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpD---g-----------~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+..-|+..|++++|.|- | +.||+++.|. .|+||...+..|.+-+.+..|.+-...++|.|
T Consensus 143 --ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn---~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 143 --KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN---LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred --hhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc---ceeeeecCCcchhhhhhhhhcchhhhhhhhcc
Confidence 112234567999999997 5 5699999998 99999999999988777877766668899999
Q ss_pred CCCc---eEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCC
Q 000992 330 TKPL---QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~~~---~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~ 406 (1196)
..++ +++..++||++. +|... .++..-+.|.+. +++..++.|+||+.| +
T Consensus 218 ~~gl~~s~iAS~SqDg~vi----Iwt~~---------~e~e~wk~tll~-------------~f~~~~w~vSWS~sG--n 269 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVI----IWTKD---------EEYEPWKKTLLE-------------EFPDVVWRVSWSLSG--N 269 (299)
T ss_pred ccCCCceeeEEecCCCcEE----EEEec---------CccCcccccccc-------------cCCcceEEEEEeccc--c
Confidence 8753 566677777764 34332 011111111110 267889999999999 9
Q ss_pred EEEEEECCCcEEEEeCCC
Q 000992 407 CLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~~ 424 (1196)
.||+...|+.|.+|.-+.
T Consensus 270 ~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 270 ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEecCCcEEEEEEeCC
Confidence 999999999999998764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-15 Score=176.80 Aligned_cols=384 Identities=13% Similarity=0.152 Sum_probs=245.8
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~v 112 (1196)
+.|..++..+.+..|++ .+++. |.+ +.++ .+.|+++.=+|--+.+|+|..+|+|++.|+..+++-..
T Consensus 173 NKIvvGs~~G~lql~Nv--rt~K~---v~~----f~~~----~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNV--RTGKV---VYT----FQEF----FSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred eeEEEeecCCcEEEEEe--ccCcE---EEE----eccc----ccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 55777788888999999 55544 222 3333 36899999999999999999999999999988766432
Q ss_pred eeec-CcEEEEEECCCCCE-EEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 113 GRVE-GGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 113 g~~~-~~I~~~awSPDg~~-LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
=.|+ +.|++++|.-||+- ||+++..|.+-+|+.+...+..+... .|++++....|-|.-..+.
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n--------------ah~~sv~~~~fl~~epVl~- 304 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN--------------AHYGSVTGATFLPGEPVLV- 304 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec--------------cccCCcccceecCCCceEe-
Confidence 2344 88999999999985 56666779999997654443322211 3456667777777666666
Q ss_pred eeccccccCCCCEEEEE--ECCCC--cEEEEeccCCCceeEEEEc-CCCCeEEEEecCCC----------------C---
Q 000992 191 LSEFCNSSKLHKRLKVW--ERDSG--TLQASSELKAFMGAVLEWM-PSGANIAAVYDRKS----------------E--- 246 (1196)
Q Consensus 191 vss~d~~~~~d~~irVW--d~~~G--~l~~~~e~~~~~v~slaws-PdG~~IAs~s~d~~----------------~--- 246 (1196)
.++ .|..+|+| |..+| +++..-.+|..+-.+|.|- .+|..|-+++.|.+ .
T Consensus 305 ta~------~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 305 TAG------ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred ecc------CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 344 34556655 43344 4455556677766777776 66777777665531 0
Q ss_pred ----------------------------------------CCCCeEEEEeCCCeeEEEEEecc----CCCCcEEEEEEcc
Q 000992 247 ----------------------------------------NKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNC 282 (1196)
Q Consensus 247 ----------------------------------------~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSp 282 (1196)
..+....-|+-...+.|+|.|.. +....+.+++-|+
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 00122333443333445666652 1345799999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE---EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEee------
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTT------ 353 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~---~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~------ 353 (1196)
-|....+|++.+ +|-+++++.+-. ...+. .+....+.++-+..+.. ++..+.+|.+..++|.-.+
T Consensus 459 CGNF~~IG~S~G---~Id~fNmQSGi~--r~sf~~~~ah~~~V~gla~D~~n~~-~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 459 CGNFVFIGYSKG---TIDRFNMQSGIH--RKSFGDSPAHKGEVTGLAVDGTNRL-LVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred cCceEEEeccCC---eEEEEEcccCee--ecccccCccccCceeEEEecCCCce-EEEccCcceEEEEecCCcceeeeec
Confidence 999999999999 999999986531 11120 11122255655554432 4444456766655543211
Q ss_pred -ecC--------CCe-eEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 354 -AVM--------ENS-TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 354 -~~~--------d~~-~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
..+ ..+ .+.+.|.-.|.+.+.....| .+.+ +|.+.|++.+||||| +.|++++-|++|++||+
T Consensus 533 l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-----vR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-----VREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDL 605 (910)
T ss_pred cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-----hHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEec
Confidence 100 011 12223444444444321111 1444 489999999999999 99999999999999999
Q ss_pred CCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEE
Q 000992 423 PAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1196)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1196)
.+..++ . .+- -.+.+.++.|+|+|.+||+.+-+. +.+++|.
T Consensus 606 pt~~lI---D--~~~--------vd~~~~sls~SPngD~LAT~Hvd~-~gIylWs 646 (910)
T KOG1539|consen 606 PTGTLI---D--GLL--------VDSPCTSLSFSPNGDFLATVHVDQ-NGIYLWS 646 (910)
T ss_pred cCccee---e--eEe--------cCCcceeeEECCCCCEEEEEEecC-ceEEEEE
Confidence 875333 1 111 013678999999999999988753 4566774
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-14 Score=181.54 Aligned_cols=365 Identities=17% Similarity=0.170 Sum_probs=207.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCcE----EEEECC-CCeEEEeee--------ecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLL----LLHSVD-GNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I----~lw~~~-~~~~e~vg~--------~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
..+...+|.++.+.+.++.....+ .+.... +...+.+-. -.+.|.++.+=+|.+.|..+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 357788888888777665554443 221111 111222211 1356999999999999999999999987
Q ss_pred EeccCce---eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE---
Q 000992 143 MTHDWDL---LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--- 216 (1196)
Q Consensus 143 ~~~~~d~---~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~--- 216 (1196)
...+-++ ..|.-. .-+.+|.+.+||||++.|| +.+ +++++-+-++ +-+.++
T Consensus 102 ~~~~~~~~~~~~E~VG---------------~vd~GI~a~~WSPD~Ella-~vT------~~~~l~~mt~-~fd~i~E~~ 158 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVG---------------SVDSGILAASWSPDEELLA-LVT------GEGNLLLMTR-DFDPISEVP 158 (928)
T ss_pred EEccCCCCCceeEEEE---------------EEcCcEEEEEECCCcCEEE-EEe------CCCEEEEEec-cceEEEEee
Confidence 6322111 111111 1246899999999999999 665 2344444332 111100
Q ss_pred -----------E----------e-------------cc-----------CCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 217 -----------S----------S-------------EL-----------KAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 217 -----------~----------~-------------e~-----------~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
. + ++ .+..-..|+|+.||+++|+.+-+...+.+..
T Consensus 159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~ 238 (928)
T PF04762_consen 159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRV 238 (928)
T ss_pred cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeE
Confidence 0 0 00 1223468999999999999987443223578
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c-EEEEEcc
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G-IRFMWHP 329 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~-~~v~Wsp 329 (1196)
+++|+|+|..+..- .+-.+--..|+|-|.|.++|+.-.-...+.|-+|..+..+. ---++.+.+.. . ..+.|++
T Consensus 239 iRVy~ReG~L~stS---E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrh-geF~l~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 239 IRVYSREGELQSTS---EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRH-GEFTLRFDPEEEKVIELAWNS 314 (928)
T ss_pred EEEECCCceEEecc---ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEe-eeEecCCCCCCceeeEEEECC
Confidence 99999999765421 12222334799999999999988744445788888776432 11223332222 2 7788999
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC--CCCEEEEEEecCCCCCE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF--PTAVTEMAFYSKSSKNC 407 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~--~~~V~~Vafspdg~~~~ 407 (1196)
++.. |+++..+. +. .|.+. + - =|=++ +.+.+ ...+..+.|+|... ..
T Consensus 315 ds~i-LAv~~~~~-vq----LWt~~--N--------Y----HWYLK----------qei~~~~~~~~~~~~Wdpe~p-~~ 363 (928)
T PF04762_consen 315 DSEI-LAVWLEDR-VQ----LWTRS--N--------Y----HWYLK----------QEIRFSSSESVNFVKWDPEKP-LR 363 (928)
T ss_pred CCCE-EEEEecCC-ce----EEEee--C--------C----EEEEE----------EEEEccCCCCCCceEECCCCC-CE
Confidence 8865 66665432 21 22221 0 0 01111 11222 22344588999764 77
Q ss_pred EEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC-eEEEEEecCCCCceEEEEeeccCCccc
Q 000992 408 LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGATLNEDGLL 486 (1196)
Q Consensus 408 lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~~~~~~~~~ 486 (1196)
|.+++.+|.+..+++.-.. ..|.. -.|++ -.+|+ -++ +++.+-.+..
T Consensus 364 L~v~t~~g~~~~~~~~~~v----~~s~~-------------------~~~~D~g~vaV-IDG--~~lllTpf~~------ 411 (928)
T PF04762_consen 364 LHVLTSNGQYEIYDFAWDV----SRSPG-------------------SSPNDNGTVAV-IDG--NKLLLTPFRR------ 411 (928)
T ss_pred EEEEecCCcEEEEEEEEEE----EecCC-------------------CCccCceEEEE-EeC--CeEEEecccc------
Confidence 8888888888777663110 00100 00111 11221 222 2333332211
Q ss_pred cchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 487 GFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
..+|-+++ ...+.++++|..+++++ ++..+++.+.||++..|..
T Consensus 412 -------------a~VPPPMs--------~~~l~~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 412 -------------AVVPPPMS--------SYELELPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred -------------cCCCchHh--------ceEEcCCCCcEEEEEeC-CCCeEEEEECCCCEEEEEe
Confidence 12333222 23466788999999887 6666999999999998863
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-17 Score=186.97 Aligned_cols=254 Identities=17% Similarity=0.225 Sum_probs=205.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHhcc----ChhHHHHHHHHh--cCCcchh--hHHHHHHhcCChhhhcccHHHHhhCHHHH
Q 000992 879 EEALKHLLWLADSEAVYEAALGLY----DLNLAAIVALNS--QRDPKEF--LPYLQELESMPPLLMRYTIDLRLQRFENA 950 (1196)
Q Consensus 879 ~~al~~l~~L~d~~~Ly~~ALg~y----D~~lal~vAq~s--q~DpkeY--lpfL~~L~~l~~~~~r~~Id~~L~ry~~A 950 (1196)
++-|+|+.--.=-.+||+.|=.+| ||+-|+.-.+|- ++..-|. +.|-.++-++|+.|..... +.|+|+.|
T Consensus 648 e~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~--~~~q~daa 725 (1636)
T KOG3616|consen 648 EEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLE--QIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHH--HHHhHHHH
Confidence 455666653333467888886666 455544333321 1111111 4566667777777776654 68999999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHH
Q 000992 951 LKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR 1027 (1196)
Q Consensus 951 l~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~ 1027 (1196)
+.||+++.. .-+|+|..... +.|++|+.+. .|.+.....+-..|+|+.++++|+.|..+|..++.+..|+.||.
T Consensus 726 inhfiea~~--~~kaieaai~a-kew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~ 802 (1636)
T KOG3616|consen 726 INHFIEANC--LIKAIEAAIGA-KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYG 802 (1636)
T ss_pred HHHHHHhhh--HHHHHHHHhhh-hhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHh
Confidence 999999976 79999999999 9999999998 56666677888899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000992 1028 ASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1028 ~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~d 1107 (1196)
++|.|..|+.++.+.. .++....++..-|+.|.+.|+|.||.++|.. .|.++.||.||-+.+..++.+||+.+|...-
T Consensus 803 k~~kw~da~kla~e~~-~~e~t~~~yiakaedldehgkf~eaeqlyit-i~~p~~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECH-GPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IGEPDKAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred ccccHHHHHHHHHHhc-CchhHHHHHHHhHHhHHhhcchhhhhheeEE-ccCchHHHHHHHhhCcchHHHHHHHHhChhh
Confidence 9999999999999864 7788888999999999999999999999999 9999999999999999999999999998555
Q ss_pred hHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1108 LITK---VKHAS-----LECASSLIGEYKEGLEKVGKYLT 1139 (1196)
Q Consensus 1108 L~e~---v~~~l-----~e~~~~~~e~l~~~~~~~~~~~~ 1139 (1196)
+.++ +...+ +.+++.+.-...+++..++.|+.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~ 920 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKA 920 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhh
Confidence 5555 33333 45677788889999999999975
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9e-16 Score=172.43 Aligned_cols=301 Identities=14% Similarity=0.118 Sum_probs=197.3
Q ss_pred EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec----ccccCcc-ccccCcc--ccCCCCeEEEEE
Q 000992 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL----EELAEGF-DVHEPEL--SSSFSFKSPISW 181 (1196)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l----~~~~~~~-~Vs~tqf--~~~~~~v~~isW 181 (1196)
+..++.|.-.|.+++.|||++.+.+++.+++|.-| +..++... ....-.+ +-.+.++ ..|...+.+++-
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw----~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKW----DVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeee----ehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence 55677788999999999999999999999999655 44333321 1111000 1112222 378888999999
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
|+||+||| .+. .++.|.||+.++++.++++.+|.+.|.+++|+-.-+.+-|++.|. .|++|..+-+.
T Consensus 211 S~Dgkyla-tgg------~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr------svkvw~~~~~s 277 (479)
T KOG0299|consen 211 SSDGKYLA-TGG------RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR------SVKVWSIDQLS 277 (479)
T ss_pred cCCCcEEE-ecC------CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC------ceEEEehhHhH
Confidence 99999999 565 468999999999999999999999999999999888888888864 59999865322
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC--cEEEEEccCCCceEEEEe
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~ 339 (1196)
.-+ ++.+ |+..|.+|.-..-++.+-+++.|+ |++||.+..-. | +.|.+.. .-++++=.+. .+.+++
T Consensus 278 ~ve-tlyG-Hqd~v~~IdaL~reR~vtVGgrDr---T~rlwKi~ees----q-lifrg~~~sidcv~~In~~--HfvsGS 345 (479)
T KOG0299|consen 278 YVE-TLYG-HQDGVLGIDALSRERCVTVGGRDR---TVRLWKIPEES----Q-LIFRGGEGSIDCVAFINDE--HFVSGS 345 (479)
T ss_pred HHH-HHhC-CccceeeechhcccceEEeccccc---eeEEEeccccc----e-eeeeCCCCCeeeEEEeccc--ceeecc
Confidence 111 1223 356799999999999999999999 99999985421 2 2222211 1233333222 133344
Q ss_pred cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000992 340 LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 340 ~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~l 419 (1196)
.+|.+. .|++. --+.|-+.++.....|-+ ..+.++.+|++|+-.|.. +++|+++.+|.|+|
T Consensus 346 dnG~Ia----LWs~~----------KKkplf~~~~AHgv~~~~---~~~~~~~Witsla~i~~s--dL~asGS~~G~vrL 406 (479)
T KOG0299|consen 346 DNGSIA----LWSLL----------KKKPLFTSRLAHGVIPEL---DPVNGNFWITSLAVIPGS--DLLASGSWSGCVRL 406 (479)
T ss_pred CCceEE----Eeeec----------ccCceeEeeccccccCCc---cccccccceeeeEecccC--ceEEecCCCCceEE
Confidence 444332 22221 011111112222222221 123345699999999998 89999999999999
Q ss_pred EeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEe
Q 000992 420 VDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSH 466 (1196)
Q Consensus 420 w~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~ 466 (1196)
|........ +.+..+++ -.+.|..++|+++|+.|.++.
T Consensus 407 W~i~~g~r~-------i~~l~~ls--~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 407 WKIEDGLRA-------INLLYSLS--LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEecCCccc-------cceeeecc--cccEEEEEEEccCCCEEEEec
Confidence 999753111 11111111 124789999999999666554
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=168.68 Aligned_cols=281 Identities=11% Similarity=0.059 Sum_probs=192.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC------------C-------eEEEeeeecCcEEEEEECCCCCEEEEEeC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------N-------ATEVVGRVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~------------~-------~~e~vg~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
+.+.+-+|||||..+|+|+.|-.|+|.|.+- + .+.++=.|-+.|+++.|.|-...|++++.
T Consensus 113 ~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~sr 192 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSR 192 (430)
T ss_pred cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccC
Confidence 5688999999999999999999999999851 0 12333336688999999999999999999
Q ss_pred CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE
Q 000992 137 FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 137 d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1196)
|++|++++-. ++...... +.+ .....+.+|+|.|-|.|++ +++ ...++|+||.++-++..
T Consensus 193 D~tvKlFDfs-K~saKrA~------K~~------qd~~~vrsiSfHPsGefll-vgT------dHp~~rlYdv~T~Qcfv 252 (430)
T KOG0640|consen 193 DNTVKLFDFS-KTSAKRAF------KVF------QDTEPVRSISFHPSGEFLL-VGT------DHPTLRLYDVNTYQCFV 252 (430)
T ss_pred CCeEEEEecc-cHHHHHHH------HHh------hccceeeeEeecCCCceEE-Eec------CCCceeEEeccceeEee
Confidence 9999886421 11111111 111 1123579999999999999 886 45799999998877766
Q ss_pred Eec---cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEec-cCCCCcEEEEEEccCCCeeEEEE
Q 000992 217 SSE---LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDIN-EQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 217 ~~e---~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
... .|.+.|.++.+||.|++-+++|.|+ .|++|+--..+ .. ++. .|+...|.+..|..||+++.+.+
T Consensus 253 sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG------~IklwDGVS~rCv~--t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 253 SANPDDQHTGAITQVRYSSTGSLYVTASKDG------AIKLWDGVSNRCVR--TIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred ecCcccccccceeEEEecCCccEEEEeccCC------cEEeeccccHHHHH--HHHhhcCCceeeeEEEccCCeEEeecC
Confidence 554 4778899999999999999999874 69999831111 00 111 34456799999999999999999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCc-----EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC-CeeEEEEc
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME-NSTALVID 365 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d-~~~v~viD 365 (1196)
.|. +|+||.+.+... .++.......+ +...|.....+. ..|+. ...+..||
T Consensus 325 ~DS---~vkLWEi~t~R~--l~~YtGAg~tgrq~~rtqAvFNhtEdyV------------------l~pDEas~slcsWd 381 (430)
T KOG0640|consen 325 KDS---TVKLWEISTGRM--LKEYTGAGTTGRQKHRTQAVFNHTEDYV------------------LFPDEASNSLCSWD 381 (430)
T ss_pred Ccc---eeeeeeecCCce--EEEEecCCcccchhhhhhhhhcCccceE------------------EccccccCceeecc
Confidence 999 999999988653 12222211000 111111111110 00111 11122233
Q ss_pred CC---EEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 366 GS---KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 366 g~---~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.. ++.+ ..+.|.+.|..+.-||.+ .-+.+++.|...++|-..
T Consensus 382 aRtadr~~l--------------~slgHn~a~R~i~HSP~~--p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 382 ARTADRVAL--------------LSLGHNGAVRWIVHSPVE--PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccchhhhhh--------------cccCCCCCceEEEeCCCC--Cceeeecccceeeeeeec
Confidence 22 2222 335688999999999998 789999999999999753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-16 Score=173.81 Aligned_cols=279 Identities=15% Similarity=0.146 Sum_probs=201.7
Q ss_pred CCEEEEEEccCCCE-EEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEA-LIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~-La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
+.|.+++|||.... +|++ .+-.+.||+..+... .....++..|.++.|-.||++||.|...|.|+++ |..+..
T Consensus 27 ~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf----D~k~r~ 101 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF----DMKSRV 101 (487)
T ss_pred CcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEe----ccccHH
Confidence 68999999996543 4444 455799999887543 3566788999999999999999999999999874 411111
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
.+. ++.+|...+..+.|+|++.... +++ +.|+++++||..++..+....+|...|.+.+|+|-
T Consensus 102 iLR-----------~~~ah~apv~~~~f~~~d~t~l-~s~-----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 102 ILR-----------QLYAHQAPVHVTKFSPQDNTML-VSG-----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA 164 (487)
T ss_pred HHH-----------HHhhccCceeEEEecccCCeEE-Eec-----CCCceEEEEEcCCcEEEEEecCCcceeEeeccccC
Confidence 222 3446777889999999888777 444 25799999999888776678899999999999997
Q ss_pred C-CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 G-ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G-~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
. .+++||+.| +.|++|+.--.......+ .+...|.++.+=|.|+++|+++... |++||+..+.-.+.
T Consensus 165 ~~hivvtGsYD------g~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgGn~----vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 165 NDHIVVTGSYD------GKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGGNS----VKVWDLTTGGQLLT 232 (487)
T ss_pred CCeEEEecCCC------ceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCCCe----EEEEEecCCceehh
Confidence 4 588899886 579999954322122222 2456799999999999999998775 99999875432111
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPT 392 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~ 392 (1196)
...-|....+++....++ .+|..+..||.+.+++.. + -+.+ +....++
T Consensus 233 -~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t------~--------~Kvv----------------~s~~~~~ 280 (487)
T KOG0310|consen 233 -SMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTT------N--------YKVV----------------HSWKYPG 280 (487)
T ss_pred -hhhcccceEEEEEeecCC-ceEeecccccceEEEEcc------c--------eEEE----------------Eeeeccc
Confidence 111133344788887766 457777777777654411 0 0011 3345678
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 393 ~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
+|.+++.|||+ +.+++|.+||.+.+=+.
T Consensus 281 pvLsiavs~dd--~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 281 PVLSIAVSPDD--QTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ceeeEEecCCC--ceEEEecccceeeeehh
Confidence 99999999999 89999999998876543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=157.97 Aligned_cols=295 Identities=13% Similarity=0.028 Sum_probs=198.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEEC-CCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~-~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~ 153 (1196)
-.++-|.|..+|..|-+++.|.++-+|-. ++.++-....|.+.|+|+..+-|.+.|++++.|.++++|+ ..+..+...
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 46899999999999999999999999866 6656656666799999999999999999999999998875 333433332
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-------cEEEEeccCCCcee
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-------TLQASSELKAFMGA 226 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-------~l~~~~e~~~~~v~ 226 (1196)
.. ...|..+.|+++|.+++ .++.+.. +..+.|-+++.... +.......++..+.
T Consensus 91 k~-----------------~~~Vk~~~F~~~gn~~l-~~tD~~m-g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 91 KT-----------------NSPVKRVDFSFGGNLIL-ASTDKQM-GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ec-----------------CCeeEEEeeccCCcEEE-EEehhhc-CcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 21 13568999999999988 5543222 34567888887522 22222233456678
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..-|+|-|+.|.+|..+ ..|..|+ +||+..-+ -...+...|++|.+|||.++..+++.|. +-+|||..
T Consensus 152 ~a~Wg~l~~~ii~Ghe~------G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d~T~FiT~s~Dt---takl~D~~ 220 (327)
T KOG0643|consen 152 SALWGPLGETIIAGHED------GSISIYDARTGKELVD--SDEEHSSKINDLQFSRDRTYFITGSKDT---TAKLVDVR 220 (327)
T ss_pred eeeecccCCEEEEecCC------CcEEEEEcccCceeee--chhhhccccccccccCCcceEEecccCc---cceeeecc
Confidence 88999999999999875 4699999 56644221 0112345799999999999999999999 99999998
Q ss_pred CCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe-eccccCCCCCc
Q 000992 306 NNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPM 383 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt-~l~~~~vpppm 383 (1196)
.... +| ++. ...+ .+.+.+|-... +....|+- ..+.. ..+++.=+.- .|-...... -
T Consensus 221 tl~v-~K-ty~--te~PvN~aaisP~~d~---VilgGGqe-A~dVT------------TT~~r~GKFEArFyh~i~eE-E 279 (327)
T KOG0643|consen 221 TLEV-LK-TYT--TERPVNTAAISPLLDH---VILGGGQE-AMDVT------------TTSTRAGKFEARFYHLIFEE-E 279 (327)
T ss_pred ceee-EE-Eee--ecccccceecccccce---EEecCCce-eeeee------------eecccccchhhhHHHHHHHH-H
Confidence 7543 11 221 1223 66778886654 22223331 11111 1111100000 000000000 0
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
..+.-+|=++|++|||+|+| +..++++.||.|++..++
T Consensus 280 igrvkGHFGPINsvAfhPdG--ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDG--KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred hccccccccCcceeEECCCC--cccccCCCCceEEEEEec
Confidence 00111367899999999999 999999999999998765
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.9e-16 Score=162.32 Aligned_cols=281 Identities=12% Similarity=0.098 Sum_probs=194.4
Q ss_pred CEEEEEEccC-CCEEEEE-------ECCCcEEEEECC-CCeEEEeee--ecCcEEEEEECCCCC-EEEEEeCCceEEEEe
Q 000992 77 SITAFDYLME-KEALIVG-------TSSGLLLLHSVD-GNATEVVGR--VEGGVRFISPSPDGD-LLGVTTGFGQILVMT 144 (1196)
Q Consensus 77 ~v~~v~~spd-~~~La~a-------s~dG~I~lw~~~-~~~~e~vg~--~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~ 144 (1196)
.=.++.|||= -..||+| ..+|.+.|-++. .+.+..+-+ ..+++..++||+.-+ .++++++||++++|+
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 3457888882 2344444 257899999885 433433332 258899999999855 567779999999876
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
. +..+.+++ .|+.|...|.++.|++- ++.|. +|| .|++||+|+..-++.+.|+.+|..
T Consensus 90 ~---~~~s~Pi~-----------~~kEH~~EV~Svdwn~~~r~~~l-tsS------WD~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 90 L---TMPSKPIH-----------KFKEHKREVYSVDWNTVRRRIFL-TSS------WDGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred c---CCCCcchh-----------HHHhhhhheEEeccccccceeEE-eec------cCCceEeecCCCCcceEeecCCcc
Confidence 1 22222332 35678888999999984 45566 455 469999999988899999999999
Q ss_pred ceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceE
Q 000992 224 MGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSV 299 (1196)
Q Consensus 224 ~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V 299 (1196)
.|...+||| .++++|++|.|. ..+||+.. |... .++.| ...|.+..||. |-.+||+++.|. .|
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~------~l~lwdvr~~gk~~---~i~ah-~~Eil~cdw~ky~~~vl~Tg~vd~---~v 215 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDG------TLRLWDVRSPGKFM---SIEAH-NSEILCCDWSKYNHNVLATGGVDN---LV 215 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCc------eEEEEEecCCCcee---EEEec-cceeEeecccccCCcEEEecCCCc---eE
Confidence 999999999 578999999874 69999832 3221 23333 35799999996 667899999999 99
Q ss_pred EEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
+.||+.|+.-- ..++..|.-.+..++|||-....|+..+-|- ++++|++...
T Consensus 216 r~wDir~~r~p-l~eL~gh~~AVRkvk~Sph~~~lLaSasYDm-------------------------T~riw~~~~~-- 267 (311)
T KOG0277|consen 216 RGWDIRNLRTP-LFELNGHGLAVRKVKFSPHHASLLASASYDM-------------------------TVRIWDPERQ-- 267 (311)
T ss_pred EEEehhhcccc-ceeecCCceEEEEEecCcchhhHhhhccccc-------------------------eEEecccccc--
Confidence 99999986521 1234333222377889997766555544322 2233322110
Q ss_pred CCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 380 PPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 380 pppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
--+..+. .|.+-|..+.||+-.+ ..+|+.+.|+.+.+|+.
T Consensus 268 --ds~~e~~~~HtEFv~g~Dws~~~~-~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 --DSAIETVDHHTEFVCGLDWSLFDP-GQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhhhhccceEEeccccccccC-ceeeecccccceeeecc
Confidence 0011222 2677788999998753 78999999999999984
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-14 Score=167.12 Aligned_cols=394 Identities=13% Similarity=0.139 Sum_probs=255.0
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eee
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~ 151 (1196)
++.|+++.+-+. -+.++.|+..|.++|||..+++. -...++..+|+++.=||-=..+|+|..+|+|.+.+.-++ .+.
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 345888854332 37788999999999999998765 466667899999999999999999999999999874443 333
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slaw 230 (1196)
++. ...+.|.+++||-||..+.++|. ..+.+-+||.+.-+++...+ .|.+.+....|
T Consensus 239 sFk----------------~d~g~VtslSFrtDG~p~las~~------~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f 296 (910)
T KOG1539|consen 239 SFK----------------QDWGRVTSLSFRTDGNPLLASGR------SNGDMAFWDLEKKKLINVTRNAHYGSVTGATF 296 (910)
T ss_pred EEE----------------ccccceeEEEeccCCCeeEEecc------CCceEEEEEcCCCeeeeeeeccccCCccccee
Confidence 322 11267899999999998762332 35889999996667777665 67788888999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccCC-------------
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFEE------------- 295 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~~------------- 295 (1196)
-|.--.+.+++.|+ ...+-+||. .|- -+....+..|...-..|.|- .+|..+-+++.|+.
T Consensus 297 l~~epVl~ta~~Dn----Slk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 297 LPGEPVLVTAGADN----SLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred cCCCceEeeccCCC----ceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhH
Confidence 99888888888764 344555552 121 01111222223333444443 44555555554440
Q ss_pred -------------------------------------------------cceEEEEEecCC---EEEEEEEEEEecC--C
Q 000992 296 -------------------------------------------------YDSVKICFFSNN---HWYLKYEIRYLRR--D 321 (1196)
Q Consensus 296 -------------------------------------------------~~~V~lW~~~n~---~wylkq~l~~~~~--~ 321 (1196)
....+-|+..|. .|.|+.. ++... .
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~-~~~~~~~~ 450 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK-RFKKDDIN 450 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc-cccccCcc
Confidence 003444444331 1222111 00000 1
Q ss_pred cEEEEEccCCCceEEEEecCCcEEEEEEEEeee------------------cCCC--eeEEEEcCCEEEEeeccccCCCC
Q 000992 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------------------VMEN--STALVIDGSKILVTPLSLSLMPP 381 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------------------~~d~--~~v~viDg~~l~lt~l~~~~vpp 381 (1196)
.+++.-++=|+. ..+++..|.+..++..-.+. .++. -+++..-...++.|+|+....
T Consensus 451 ~~av~vs~CGNF-~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l-- 527 (910)
T KOG1539|consen 451 ATAVCVSFCGNF-VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL-- 527 (910)
T ss_pred eEEEEEeccCce-EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--
Confidence 133444443333 34455567666555432211 1121 233333334689999987651
Q ss_pred CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeE
Q 000992 382 PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLL 461 (1196)
Q Consensus 382 pm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1196)
..++.....+..+..+... .++|++..|-.|.++|..+......+.| |.+.+..++|||||+.
T Consensus 528 ---~~~l~l~~~~~~iv~hr~s--~l~a~~~ddf~I~vvD~~t~kvvR~f~g------------h~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 528 ---KKSLRLGSSITGIVYHRVS--DLLAIALDDFSIRVVDVVTRKVVREFWG------------HGNRITDMTFSPDGRW 590 (910)
T ss_pred ---eeeeccCCCcceeeeeehh--hhhhhhcCceeEEEEEchhhhhhHHhhc------------cccceeeeEeCCCCcE
Confidence 2455667778888888887 7899999999999999987544433444 4678999999999999
Q ss_pred EEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEE
Q 000992 462 LSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQ 541 (1196)
Q Consensus 462 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 541 (1196)
|++++.+ +++.+|++.- +.+ .+-..++.+.+++++|| .++.++..
T Consensus 591 lisasmD--~tIr~wDlpt-----------------------------~~l---ID~~~vd~~~~sls~SP-ngD~LAT~ 635 (910)
T KOG1539|consen 591 LISASMD--STIRTWDLPT-----------------------------GTL---IDGLLVDSPCTSLSFSP-NGDFLATV 635 (910)
T ss_pred EEEeecC--CcEEEEeccC-----------------------------cce---eeeEecCCcceeeEECC-CCCEEEEE
Confidence 9998876 6888998731 111 23355688899999999 88999877
Q ss_pred eeC-CeEEEEe
Q 000992 542 FHG-GKISEYM 551 (1196)
Q Consensus 542 ~~d-G~v~~~~ 551 (1196)
-.| .-||.|.
T Consensus 636 Hvd~~gIylWs 646 (910)
T KOG1539|consen 636 HVDQNGIYLWS 646 (910)
T ss_pred EecCceEEEEE
Confidence 666 6688884
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-15 Score=167.76 Aligned_cols=266 Identities=13% Similarity=0.133 Sum_probs=184.5
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC---EEEEEECCCcEEEEE
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE---ALIVGTSSGLLLLHS 103 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~---~La~as~dG~I~lw~ 103 (1196)
+++.-++.|+++|-|+.+..|+. ..+.. .. +.+| .+.|.+++|.--.+ .+++|+.|.+++||-
T Consensus 110 sv~~~~~~IltgsYDg~~riWd~--~Gk~~-~~-------~~Gh----t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 110 SVKGASKWILTGSYDGTSRIWDL--KGKSI-KT-------IVGH----TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred hhcccCceEEEeecCCeeEEEec--CCceE-EE-------EecC----CcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 34455899999999999999998 22221 11 3444 46788788755444 499999999999987
Q ss_pred CCCCe--EE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc------------Cccccc
Q 000992 104 VDGNA--TE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA------------EGFDVH 165 (1196)
Q Consensus 104 ~~~~~--~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~------------~~~~Vs 165 (1196)
.+-+. .+ +-| |..+|-+++-++||..++++|.|.+|++|+..-++..+..-.... ...++
T Consensus 176 ~~~~~~~~~~~~~~~G-Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~- 253 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRG-HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL- 253 (423)
T ss_pred ecCchhhhhHHhHhcc-cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-
Confidence 76432 11 235 699999999999999999999999999998322222222111110 00111
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
....+|...|.+|-|++.+-.+- ++ .|.+||+||.++|.+..+.... ....+++.+|..++||+|+.|++
T Consensus 254 -vtl~GHt~~Vs~V~w~d~~v~yS--~S------wDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 254 -VTLEGHTEPVSSVVWSDATVIYS--VS------WDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred -EEecccccceeeEEEcCCCceEe--ec------ccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCc
Confidence 22338999999999999554443 33 4799999999999988876543 34589999999999999999764
Q ss_pred CCCCCeEEEEeC-CC--eeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC
Q 000992 246 ENKCPSIVFYER-NG--LERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD 321 (1196)
Q Consensus 246 ~~~~~~V~~~e~-nG--l~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~ 321 (1196)
+++|++ +| ... .+.+-+ |.++|.++.|||-.. +|++++.|+ ++++||+..-.--| ..|..|.+.
T Consensus 324 ------irl~DPR~~~gs~v-~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~pl-ydI~~h~DK 391 (423)
T KOG0313|consen 324 ------IRLWDPRTGDGSVV-SQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKAPL-YDIAGHNDK 391 (423)
T ss_pred ------eeecCCCCCCCcee-EEeeec-chhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCCcc-eeeccCCce
Confidence 999994 33 111 123434 457999999999776 688999999 99999987532111 234443333
Q ss_pred cEEEEEccC
Q 000992 322 GIRFMWHPT 330 (1196)
Q Consensus 322 ~~~v~Wsp~ 330 (1196)
..++.|...
T Consensus 392 vl~vdW~~~ 400 (423)
T KOG0313|consen 392 VLSVDWNEG 400 (423)
T ss_pred EEEEeccCC
Confidence 367777643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-15 Score=169.58 Aligned_cols=158 Identities=18% Similarity=0.323 Sum_probs=145.8
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHH
Q 000992 947 FENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMK 1024 (1196)
Q Consensus 947 y~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~ 1024 (1196)
|++|-.+|.+..+ |++|+|++++. .-|-+|++|. .-|++.-.+-++||+||+..++++.|..+|..|+...||++
T Consensus 664 ydkagdlfeki~d--~dkale~fkkg-daf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaie 740 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHD--FDKALECFKKG-DAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIE 740 (1636)
T ss_pred HHhhhhHHHHhhC--HHHHHHHHHcc-cHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHH
Confidence 9999999999966 99999999999 9999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000992 1025 AYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1025 ~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
+.+.+..|.+|+.+...+. +..-....+-++|++..+.|+|+-|.++|.+ .+-++.||+||-+++.|++|++|+.+..
T Consensus 741 aai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e-~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTE-ADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHh-cchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 9999999999999998764 3333345788999999999999999999999 9999999999999999999999999966
Q ss_pred CchhH
Q 000992 1105 REDLI 1109 (1196)
Q Consensus 1105 ~~dL~ 1109 (1196)
+|+-.
T Consensus 819 ~~e~t 823 (1636)
T KOG3616|consen 819 GPEAT 823 (1636)
T ss_pred CchhH
Confidence 66543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=168.33 Aligned_cols=319 Identities=13% Similarity=0.165 Sum_probs=194.3
Q ss_pred CCCEEEEEEccCCC-EEEEEECCCcEEEEECCC----C---eEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEE
Q 000992 75 GDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG----N---ATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1196)
Q Consensus 75 ~~~v~~v~~spd~~-~La~as~dG~I~lw~~~~----~---~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~ 143 (1196)
...|.++.|.+.+. .||+|+.|.+|+||-++. + .++ .++.|+..|+++.|||+|++||+|+.+|+|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35789999999887 999999999999998742 2 444 567789999999999999999999999999999
Q ss_pred eccCceeeeeeccc-cc--CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc
Q 000992 144 THDWDLLYENPLEE-LA--EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1196)
Q Consensus 144 ~~~~d~~~~~~l~~-~~--~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~ 220 (1196)
...-..+. .-.. .+ ...++.--...+|.+.+..++|+||+.+++ +++. |.++++||...|+++.+...
T Consensus 93 k~~~~~~~--~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~-s~s~------dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 93 KQGDVRIF--DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV-SGSV------DNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred EecCcCCc--cccchhhhCccceEEEEEecccccchhhhhccCCCceee-eeec------cceEEEEEeccceeEeeccc
Confidence 64311111 0000 00 011111111226788899999999999999 6764 68999999999999999999
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec----cCCC-------------CcEEEEEEccC
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN----EQID-------------STVELLKWNCM 283 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~----~~~~-------------~~V~~laWSpD 283 (1196)
|...+..++|-|-+++||+-+.|.. ......-|.+-+.+++.-.++ .+.+ ..-..++|+||
T Consensus 164 h~~yvqgvawDpl~qyv~s~s~dr~--~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPd 241 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQYVASKSSDRH--PEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPD 241 (434)
T ss_pred cccccceeecchhhhhhhhhccCcc--cceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCC
Confidence 9999999999999999999887752 011111122222222211111 0011 12446899999
Q ss_pred CCeeEEEEccC--Cc----ceEEEEEecCCEEEEEEEEEEecC--C-cEEEEEccCCCceEEEEecCCcE--EEEEEEEe
Q 000992 284 SDLLAAVVRFE--EY----DSVKICFFSNNHWYLKYEIRYLRR--D-GIRFMWHPTKPLQLICWTLDGQI--TTYNFIWT 352 (1196)
Q Consensus 284 g~~LAs~~~d~--~~----~~V~lW~~~n~~wylkq~l~~~~~--~-~~~v~Wsp~~~~~L~~~~~~g~~--~~~~~~~~ 352 (1196)
|.+|.+...-- ++ ++..+++.+. |++...-.+. . ...+.++|--- .|.-....+.+ ..|..+
T Consensus 242 G~llvtPag~~~~g~~~~~n~tYvfsrk~----l~rP~~~lp~~~k~~lavr~~pVy~-elrp~~~~~~~~~lpyrlv-- 314 (434)
T KOG1009|consen 242 GSLLVTPAGLFKVGGGVFRNTSYVFSRKD----LKRPAARLPSPKKPALAVRFSPVYY-ELRPLSSEKFLFVLPYRLV-- 314 (434)
T ss_pred CcEEEcccceeeeCCceeeceeEeecccc----ccCceeecCCCCcceEEEEeeeeEE-EeccccccccccccccceE--
Confidence 99998854321 01 1223333332 2222111110 0 13334443110 00000000000 011222
Q ss_pred eecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 353 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 353 ~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.++.--+.+++.+- ..+-|++.-.--|=.++++++||+|| +.|++.+.||-..+-.++.
T Consensus 315 --------faiAt~~svyvydt---q~~~P~~~v~nihy~~iTDiaws~dg--~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 315 --------FAIATKNSVYVYDT---QTLEPLAVVDNIHYSAITDIAWSDDG--SVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred --------EEEeecceEEEecc---ccccceEEEeeeeeeeecceeecCCC--cEEEEeccCCceEEEEEcc
Confidence 23333334444432 22345543322366789999999999 8999999999888777664
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=172.71 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=200.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee---cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~---~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
.+.|.++.|.++...|++|+.|..|++|+..+++.+..+.. -++|+++.|-||+..+..+|.|+++.+|+-+ .
T Consensus 175 ~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd----~ 250 (459)
T KOG0288|consen 175 EGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD----S 250 (459)
T ss_pred ccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----c
Confidence 47899999999999999999999999999998775533322 4669999999999999999999999888632 2
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
....+ ++.+|.+.|+++.|.-.-..++ +++ .|++||.||...+.+..+.-+.. ....|.-+
T Consensus 251 ~r~~~-----------TLsGHtdkVt~ak~~~~~~~vV-sgs------~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~ 311 (459)
T KOG0288|consen 251 LRLRH-----------TLSGHTDKVTAAKFKLSHSRVV-SGS------ADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCS 311 (459)
T ss_pred hhhhh-----------hhcccccceeeehhhcccccee-ecc------ccchhhhhhhhhhheeccccccc-cccceEec
Confidence 22222 2347888999999987766555 344 57999999997777776644322 23555555
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+..+.|+-.| .+|+||+ +.+....+ . +..+.|.+|..|+||..|.+.+.|. ++.+.++.++.
T Consensus 312 --~~~~~SgH~D------kkvRfwD~Rs~~~~~s--v--~~gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~e-- 374 (459)
T KOG0288|consen 312 --ISDVISGHFD------KKVRFWDIRSADKTRS--V--PLGGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKE-- 374 (459)
T ss_pred --ceeeeecccc------cceEEEeccCCceeeE--e--ecCcceeeEeeccCCeEEeeecCCC---ceeeeeccccc--
Confidence 5567777665 3599999 66544432 2 2345899999999999999999888 99999998865
Q ss_pred EEEEEEEec----CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 311 LKYEIRYLR----RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 311 lkq~l~~~~----~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
.++.+.... .+.+.+.|||++.+ +..++.+|.++ +|++. .|+.-++-...
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAGS~dgsv~----iW~v~----------tgKlE~~l~~s----------- 428 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSY-VAAGSADGSVY----IWSVF----------TGKLEKVLSLS----------- 428 (459)
T ss_pred EEEEeeccccccccccceeEECCCCce-eeeccCCCcEE----EEEcc----------CceEEEEeccC-----------
Confidence 234443221 12267889999987 67777778764 56553 12211110000
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
..+..|.+++|+|.| ..|++++.++.+.+|.
T Consensus 429 --~s~~aI~s~~W~~sG--~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 429 --TSNAAITSLSWNPSG--SGLLSADKQKAVTLWT 459 (459)
T ss_pred --CCCcceEEEEEcCCC--chhhcccCCcceEecC
Confidence 012269999999999 8999999999999994
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-14 Score=151.04 Aligned_cols=240 Identities=15% Similarity=0.150 Sum_probs=168.0
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+.+.|..+.|..||+|..|+++ |++||+||+-.|.++.+..+|...|-.++-+.|...+|+++.|+ .
T Consensus 16 ~qgaV~avryN~dGnY~ltcGs-------drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk------~ 82 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGS-------DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDK------A 82 (307)
T ss_pred cccceEEEEEccCCCEEEEcCC-------CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCc------e
Confidence 4467899999999999986543 79999999999999999999999999999999999999999864 5
Q ss_pred EEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 252 IVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
|.+|+.| |..... +++ |.+.|+.++||.++.++++++-|. ++|+||......--.|.+.-.
T Consensus 83 v~vwDV~TGkv~Rr--~rg-H~aqVNtV~fNeesSVv~SgsfD~---s~r~wDCRS~s~ePiQildea------------ 144 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRR--FRG-HLAQVNTVRFNEESSVVASGSFDS---SVRLWDCRSRSFEPIQILDEA------------ 144 (307)
T ss_pred EEEEEcccCeeeee--ccc-ccceeeEEEecCcceEEEeccccc---eeEEEEcccCCCCccchhhhh------------
Confidence 9999975 444333 333 357899999999999999999999 999999865221111111100
Q ss_pred CCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEE
Q 000992 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAA 410 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs 410 (1196)
.|| +-++...+.-+++-.-+.+++..+++...+ |+. .+..+|++|.||+|+ +...+
T Consensus 145 ---------~D~-------V~Si~v~~heIvaGS~DGtvRtydiR~G~l---~sD---y~g~pit~vs~s~d~--nc~La 200 (307)
T KOG0316|consen 145 ---------KDG-------VSSIDVAEHEIVAGSVDGTVRTYDIRKGTL---SSD---YFGHPITSVSFSKDG--NCSLA 200 (307)
T ss_pred ---------cCc-------eeEEEecccEEEeeccCCcEEEEEeeccee---ehh---hcCCcceeEEecCCC--CEEEE
Confidence 011 111111222333332223566666665442 111 256789999999999 88888
Q ss_pred EECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 411 ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 411 ~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
++-|++|+|-|.++...++...|+.-+ . -.+ .-++.+..+.+++++.+ ..+.+|.+
T Consensus 201 ~~l~stlrLlDk~tGklL~sYkGhkn~-e--------ykl-dc~l~qsdthV~sgSED--G~Vy~wdL 256 (307)
T KOG0316|consen 201 SSLDSTLRLLDKETGKLLKSYKGHKNM-E--------YKL-DCCLNQSDTHVFSGSED--GKVYFWDL 256 (307)
T ss_pred eeccceeeecccchhHHHHHhcccccc-e--------eee-eeeecccceeEEeccCC--ceEEEEEe
Confidence 889999999999988777666665211 0 011 12445556677776655 67888887
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-14 Score=150.75 Aligned_cols=281 Identities=14% Similarity=0.156 Sum_probs=197.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~ 151 (1196)
.+.|.+|.|+++|+.|++.++|-+++|||...++ ..++.+.+-||..++|-.....+..+|. |.+|+..+.. .
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~----d 89 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH----D 89 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee----c
Confidence 5789999999999999999999999999987764 4577777789999999877777777765 7788765421 1
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
...+ .-|.||.+.|.+|+-+|-+..|. +++ .|++||+||...-+++-... ..+ -...||.
T Consensus 90 Nkyl-----------RYF~GH~~~V~sL~~sP~~d~Fl-S~S------~D~tvrLWDlR~~~cqg~l~-~~~-~pi~AfD 149 (311)
T KOG1446|consen 90 NKYL-----------RYFPGHKKRVNSLSVSPKDDTFL-SSS------LDKTVRLWDLRVKKCQGLLN-LSG-RPIAAFD 149 (311)
T ss_pred CceE-----------EEcCCCCceEEEEEecCCCCeEE-ecc------cCCeEEeeEecCCCCceEEe-cCC-CcceeEC
Confidence 1111 14668999999999999999999 566 46999999986555544432 111 2568999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+|-++|.+... ..|++|+.---.. ..|.+..+.......|.|||||+.|......+ .+.+-|.=.+.
T Consensus 150 p~GLifA~~~~~------~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G~ 220 (311)
T KOG1446|consen 150 PEGLIFALANGS------ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDGT 220 (311)
T ss_pred CCCcEEEEecCC------CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCCc
Confidence 999999998762 3799998521111 22444433356788999999999999998887 67777754443
Q ss_pred EEEEEEEEEecCCc---EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 309 WYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 309 wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
+++.+...+... ....|.||+.. +..+..+|++.+|+ .. .|..+..|. + |
T Consensus 221 --~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~----~~----------tg~~v~~~~--~----~---- 273 (311)
T KOG1446|consen 221 --VKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWN----LE----------TGKKVAVLR--G----P---- 273 (311)
T ss_pred --EeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEE----cC----------CCcEeeEec--C----C----
Confidence 677777766443 67889999976 55666678776443 32 333332221 0 0
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+..++.++-|+|-- -++|+ ++..+.+|-.+
T Consensus 274 ----~~~~~~~~~fnP~~--~mf~s--a~s~l~fw~p~ 303 (311)
T KOG1446|consen 274 ----NGGPVSCVRFNPRY--AMFVS--ASSNLVFWLPD 303 (311)
T ss_pred ----CCCCccccccCCce--eeeee--cCceEEEEecc
Confidence 23456677799976 45554 45678888765
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=161.49 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=190.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
++-++++||-+.-+.++|.|..|..||+ -++... . + |.+| -..|..+++|+--.+|.+++.|+.|+-
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDl--atg~Lk--l-t----ltGh----i~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDL--ATGQLK--L-T----LTGH----IETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEc--ccCeEE--E-e----ecch----hheeeeeeecccCceEEEecCCCeeEE
Confidence 8899999999887777889999999999 666542 2 1 4544 247999999999999999999999999
Q ss_pred EECCCCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||++..++ . --| |-.+|.|++.-|--..|++++.|.++++|+ .-+....+... +|++.|.++
T Consensus 220 wDLe~nkvIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWD----iRtr~~V~~l~-----------GH~~~V~~V 283 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWD----IRTRASVHVLS-----------GHTNPVASV 283 (460)
T ss_pred EechhhhhHHHhcc-ccceeEEEeccccceeEEecCCcceEEEee----ecccceEEEec-----------CCCCcceeE
Confidence 99988665 3 445 568899999999999999999999998875 33333333332 778888999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
.+.|-.-.+. ++|. |.+||+||...|+...++..|...+.+++.+|.-+++||++.| .|+-|..
T Consensus 284 ~~~~~dpqvi-t~S~------D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-------nik~w~~-- 347 (460)
T KOG0285|consen 284 MCQPTDPQVI-TGSH------DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-------NIKQWKL-- 347 (460)
T ss_pred EeecCCCceE-EecC------CceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-------cceeccC--
Confidence 9998444566 4653 6899999999999999999999999999999999999999976 4777752
Q ss_pred eeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 260 LERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 260 l~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
.+|+|.-. ..+..-|+.|+-+.|| ++.+|+..+ ++.+||+...|-|.
T Consensus 348 -p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng---~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 348 -PEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG---SIMFWDWKSGHNYQ 395 (460)
T ss_pred -CccchhhccccccceeeeeeeccCc-eEEEcCCce---EEEEEecCcCcccc
Confidence 35555322 1234568999999999 566777777 89999999776553
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.4e-15 Score=162.85 Aligned_cols=250 Identities=14% Similarity=0.126 Sum_probs=183.3
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++.+-+..+.+.++..|...+..|- ..+.. +.+ +.+|. -.|+++.|+|+...+++++.|-.|++|
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~--~s~q~---l~~----~~Gh~----kki~~v~~~~~~~~v~~aSad~~i~vw 288 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDK--PSNQI---LAT----LKGHT----KKITSVKFHKDLDTVITASADEIIRVW 288 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEec--chhhh---hhh----ccCcc----eEEEEEEeccchhheeecCCcceEEee
Confidence 344444444578888888877888876 33332 222 45553 489999999999999999999999999
Q ss_pred ECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 103 SVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 103 ~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+...... ..+-.|+..|+.+.-.|.|++|.+++.|++.-+-+ +++..+.. +.++ ..+-.+.+.+
T Consensus 289 s~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~---vs~~-----------~s~v~~ts~~ 354 (506)
T KOG0289|consen 289 SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV---VSDE-----------TSDVEYTSAA 354 (506)
T ss_pred ccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE---Eeec-----------cccceeEEee
Confidence 9865433 35556899999999999999999999999986643 22222221 1111 1123578999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
|.|||-.|+ .++ .|+.+||||..++.-...+.+|.+.|.+|+|+-+|-++|++.+|. .|++||..-+
T Consensus 355 fHpDgLifg-tgt------~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~------~V~lwDLRKl 421 (506)
T KOG0289|consen 355 FHPDGLIFG-TGT------PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG------SVKLWDLRKL 421 (506)
T ss_pred EcCCceEEe-ccC------CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC------eEEEEEehhh
Confidence 999999999 565 478999999988888889999999999999999999999999874 4999995433
Q ss_pred e-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 261 E-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 261 ~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
+ ...|.+. ....|.++.|.+.|++|++++.+- +|.+..-..-.|....++..
T Consensus 422 ~n~kt~~l~--~~~~v~s~~fD~SGt~L~~~g~~l---~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 422 KNFKTIQLD--EKKEVNSLSFDQSGTYLGIAGSDL---QVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred cccceeecc--ccccceeEEEcCCCCeEEeeccee---EEEEEecccccceeeehhhh
Confidence 2 1223332 223599999999999999997765 55555555666755444443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=167.18 Aligned_cols=327 Identities=16% Similarity=0.148 Sum_probs=213.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc------------CCCE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM------------EKEA 89 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp------------d~~~ 89 (1196)
-+.++.||+.++.|-|+-.|+.||.||+-..++-+.+.. +--| ...|++|.-.| .+ .
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s------~lyH----S~ciW~Ve~~p~nv~~~~~aclp~~-c 394 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSS------MLYH----SACIWDVENLPCNVHSPTAACLPRG-C 394 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccccccccceee------eeec----cceeeeeccccccccCcccccCCcc-c
Confidence 477889999999999999999999999953333221110 1111 23455554444 33 3
Q ss_pred EEEEECCCcEEEEECCCC---eE-----------EE--------------eee----------ecCcEEEEEECCCCCEE
Q 000992 90 LIVGTSSGLLLLHSVDGN---AT-----------EV--------------VGR----------VEGGVRFISPSPDGDLL 131 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~---~~-----------e~--------------vg~----------~~~~I~~~awSPDg~~L 131 (1196)
+.+.++||||++|+++.+ .+ .+ .|. -..||.+++.||||+.|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 678899999999998751 11 00 000 12489999999999999
Q ss_pred EEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc---CCceEEEeeccccccCCCCEEEEEE
Q 000992 132 GVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG---DGKYFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 132 A~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp---DG~~lAsvss~d~~~~~d~~irVWd 208 (1196)
|+|..-|++++.+.. .+.... ..-+|+..|.++.+|- ..++|| +++ .||.|.|+|
T Consensus 475 AsGDr~GnlrVy~Lq--~l~~~~-------------~~eAHesEilcLeyS~p~~~~kLLA-Sas------rdRlIHV~D 532 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQ--ELEYTC-------------FMEAHESEILCLEYSFPVLTNKLLA-SAS------RDRLIHVYD 532 (1080)
T ss_pred cccCccCceEEEEeh--hhhhhh-------------heecccceeEEEeecCchhhhHhhh-hcc------CCceEEEEe
Confidence 999999999876421 011000 0115777889999984 236788 565 579999999
Q ss_pred CC-CCcEEEEeccCCCceeEEEEcCCC--CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC---CCcEEEEEEcc
Q 000992 209 RD-SGTLQASSELKAFMGAVLEWMPSG--ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI---DSTVELLKWNC 282 (1196)
Q Consensus 209 ~~-~G~l~~~~e~~~~~v~slawsPdG--~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~---~~~V~~laWSp 282 (1196)
.. +=.++.++.+|...|.++.|--+| ....+++.|+. ...+.+.+.|.- ..|. +.++ ...+++++--|
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADks----imFr~~qk~~~g-~~f~-r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS----IMFRVNQKASSG-RLFP-RHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchh----hheehhccccCc-eecc-ccccccccceEEEeeeCC
Confidence 83 334677888899999999999988 44555555542 122222222211 0111 1111 23689999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-c--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-G--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
..+++++++.|+ .|+|+++.+.+ +++.+..+... + ..+.-+|.+-+ |+..+.|.++-++
T Consensus 607 ~~k~v~t~cQDr---nirif~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY-~atScsdktl~~~------------ 668 (1080)
T KOG1408|consen 607 TSKLVVTVCQDR---NIRIFDIESGK--QVKSFKGSRDHEGDLIKVILDPSGIY-LATSCSDKTLCFV------------ 668 (1080)
T ss_pred CcceEEEEeccc---ceEEEeccccc--eeeeecccccCCCceEEEEECCCccE-EEEeecCCceEEE------------
Confidence 999999999999 89999999875 23444433321 2 45556665543 3333334444333
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+|...-.-..| .+|...|+.|-|++|- ++|.+++.||.|.+|+++.
T Consensus 669 -------------Df~sgEcvA~m----~GHsE~VTG~kF~nDC--kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 -------------DFVSGECVAQM----TGHSEAVTGVKFLNDC--KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -------------Eeccchhhhhh----cCcchheeeeeecccc--hhheeecCCceEEEEECch
Confidence 33222111122 3588999999999999 8999999999999999975
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-15 Score=165.55 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=170.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCE-EEEEeCCceEEEEeccCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDL-LGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~-LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.+.|.++.|-.||+.||.|.+.|-|+++|..+..+ ...-+|+.+|..+.|+|++.+ |++|+.|+.+++|..+.... .
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-Q 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-E
Confidence 36799999999999999999999999999666333 355667999999999998765 55556666776765332211 1
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.. ..+|.|.|.+.+|+|-...++.+|+ -|++||+||...- ..+..+. |...|.++-+=
T Consensus 147 ~~--------------l~~htDYVR~g~~~~~~~hivvtGs------YDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~l 205 (487)
T KOG0310|consen 147 AE--------------LSGHTDYVRCGDISPANDHIVVTGS------YDGKVRLWDTRSLTSRVVELN-HGCPVESVLAL 205 (487)
T ss_pred EE--------------ecCCcceeEeeccccCCCeEEEecC------CCceEEEEEeccCCceeEEec-CCCceeeEEEc
Confidence 11 1267789999999998764441465 4699999998543 4444443 77889999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
|+|.+||+++. +.|++||.. |-+. ......|.-.|.+|+++.||+.|.+++-|+ .|+++++.||+
T Consensus 206 psgs~iasAgG-------n~vkVWDl~~G~ql--l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~---~VKVfd~t~~K-- 271 (487)
T KOG0310|consen 206 PSGSLIASAGG-------NSVKVWDLTTGGQL--LTSMFNHNKTVTCLRLASDSTRLLSGSLDR---HVKVFDTTNYK-- 271 (487)
T ss_pred CCCCEEEEcCC-------CeEEEEEecCCcee--hhhhhcccceEEEEEeecCCceEeeccccc---ceEEEEccceE--
Confidence 99999999986 479999975 4221 111122446799999999999999999999 89999999875
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEecCCcE
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
.++.+.++. ...++.-+|++. ++.++-.+|-+
T Consensus 272 vv~s~~~~~-pvLsiavs~dd~-t~viGmsnGlv 303 (487)
T KOG0310|consen 272 VVHSWKYPG-PVLSIAVSPDDQ-TVVIGMSNGLV 303 (487)
T ss_pred EEEeeeccc-ceeeEEecCCCc-eEEEeccccee
Confidence 566676632 237778888654 46666655543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-15 Score=158.22 Aligned_cols=304 Identities=13% Similarity=0.085 Sum_probs=213.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~ 151 (1196)
.+.|+.++--.....+.++|+|.+-.||.++++.+. ...+|.+.|++++|+|.|.+++++++|++.-+|. -.|.+-.
T Consensus 148 kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~ 227 (481)
T KOG0300|consen 148 KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPS 227 (481)
T ss_pred ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCC
Confidence 367888887777788899999999999999998875 4455789999999999999999999999998885 3454322
Q ss_pred ee---eccccc----Cccc--------------cc--cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEE
Q 000992 152 EN---PLEELA----EGFD--------------VH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 152 ~~---~l~~~~----~~~~--------------Vs--~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd 208 (1196)
.. ....++ ..++ |. ...|.+|-..|....|-.-|+..+ .+++ ||+-.+||
T Consensus 228 ~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSW------DRTAnlwD 300 (481)
T KOG0300|consen 228 NNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASW------DRTANLWD 300 (481)
T ss_pred CCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeec------cccceeee
Confidence 10 000000 0011 10 345568888899999999999999 5664 69999999
Q ss_pred CCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeE
Q 000992 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1196)
.++|++...+.+|+.....++=.|..+++.++++|. +.++|+-.-..+..-.+.+ ++..|.++.|+-|-+ ++
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDt------TFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDT------TFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCc------eeEeccchhhcceeeeecc-cccceeEEEEecCCc-ee
Confidence 999999999999999889999999999999999975 5999985433333222333 467899999998875 56
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
+++.|+ +|++|++.|..--| .+++. =+|- .++.+..+ +.+... |+ |...
T Consensus 373 SgSDDr---TvKvWdLrNMRspl-ATIRt---------dS~~--NRvavs~g-~~iIAi-------Ph--------DNRq 421 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRSPL-ATIRT---------DSPA--NRVAVSKG-HPIIAI-------PH--------DNRQ 421 (481)
T ss_pred ecCCCc---eEEEeeeccccCcc-eeeec---------CCcc--ceeEeecC-CceEEe-------cc--------CCce
Confidence 888898 99999999965211 12221 0111 12333321 111100 22 4556
Q ss_pred EEEeeccccCCCC-CceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 369 ILVTPLSLSLMPP-PMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 369 l~lt~l~~~~vpp-pm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+++.++.+.-+|. |-.. .-.|..-|.++||+-+..-.-|.+++-|..+.-|+..++
T Consensus 422 vRlfDlnG~RlaRlPrts-RqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTS-RQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EEEEecCCCccccCCccc-ccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 7777776544432 2111 124677799999998764455778889999999998754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=179.95 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=162.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC--------------------------------C---------------
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG--------------------------------N--------------- 107 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~--------------------------------~--------------- 107 (1196)
.+.|+++.||+||++||+|++||-|+||.+.. .
T Consensus 267 ~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~ 346 (712)
T KOG0283|consen 267 KGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSP 346 (712)
T ss_pred CCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCc
Confidence 57899999999999999999999999997633 0
Q ss_pred ---------------eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 108 ---------------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 108 ---------------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.++..| |.+-|..++||-+ .+|.++|.|+||+|| .+-...+|... .|
T Consensus 347 ~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSKn-~fLLSSSMDKTVRLW----h~~~~~CL~~F------------~H 408 (712)
T KOG0283|consen 347 CVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSKN-NFLLSSSMDKTVRLW----HPGRKECLKVF------------SH 408 (712)
T ss_pred cccCCCccccccccchhhhhc-cchhheecccccC-CeeEeccccccEEee----cCCCcceeeEE------------ec
Confidence 001234 5788999999988 788999999999876 44455566544 47
Q ss_pred CCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 173 FSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 173 ~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
.+-|++|+|.| |-+||+ +|+. |+++|||+. ....+.-......+|++++|+|||+....|+.+ +.
T Consensus 409 ndfVTcVaFnPvDDryFi-SGSL------D~KvRiWsI-~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~------G~ 474 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFI-SGSL------DGKVRLWSI-SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN------GY 474 (712)
T ss_pred CCeeEEEEecccCCCcEe-eccc------ccceEEeec-CcCeeEeehhhhhhheeEEeccCCceEEEEEec------cE
Confidence 78889999999 778999 6886 589999999 554444444466889999999999999999985 46
Q ss_pred EEEEeCCCeeE-EEEEeccC-----CCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC--Cc
Q 000992 252 IVFYERNGLER-SSFDINEQ-----IDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DG 322 (1196)
Q Consensus 252 V~~~e~nGl~~-~~f~l~~~-----~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~--~~ 322 (1196)
.+||+..|+.. ..+.+..+ ....|..+.|.|-. ..+.+.+.|. .|||+|...-. |..-+....+ ++
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~~~~--lv~KfKG~~n~~SQ 549 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDS---RIRIYDGRDKD--LVHKFKGFRNTSSQ 549 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCC---ceEEEeccchh--hhhhhcccccCCcc
Confidence 99999888754 33444321 11369999998643 3466666777 79999984311 1112222111 22
Q ss_pred EEEEEccCCCceEEEEe
Q 000992 323 IRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~ 339 (1196)
....|+.+|.. |..++
T Consensus 550 ~~Asfs~Dgk~-IVs~s 565 (712)
T KOG0283|consen 550 ISASFSSDGKH-IVSAS 565 (712)
T ss_pred eeeeEccCCCE-EEEee
Confidence 55666666544 44444
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.4e-15 Score=180.10 Aligned_cols=291 Identities=17% Similarity=0.165 Sum_probs=192.9
Q ss_pred EEEEECCCCC-EEEEEeCCceEEEEeccCceeeeeeccccc------CccccccCccccCCCCeEEEEEccCCce----E
Q 000992 120 RFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELA------EGFDVHEPELSSSFSFKSPISWRGDGKY----F 188 (1196)
Q Consensus 120 ~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~------~~~~Vs~tqf~~~~~~v~~isWspDG~~----l 188 (1196)
...+|||++. +||+|+..+.+- ..|..-....+-..+ +-+++... ..+.+...++|.+-|.- +
T Consensus 10 a~~awSp~~~~~laagt~aq~~D---~sfst~~slEifeld~~~~~~dlk~~~s~---~s~~rF~kL~W~~~g~~~~GlI 83 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFD---ASFSTSASLEIFELDFSDESSDLKPVGSL---QSSNRFNKLAWGSYGSHSHGLI 83 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccc---cccccccccceeeecccCccccccccccc---cccccceeeeecccCCCcccee
Confidence 4578999998 788887665542 222111111111111 11333100 12345689999988876 5
Q ss_pred EEeeccccccCCCCEEEEEECCC---C---cEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDS---G---TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~---G---~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
| ++ .+|+.|-+||... + +++.+...|.|.|..|.|+|.+. ++|||..+ ..|.|||.|...
T Consensus 84 a--GG-----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------geI~iWDlnn~~ 150 (1049)
T KOG0307|consen 84 A--GG-----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------GEILIWDLNKPE 150 (1049)
T ss_pred e--cc-----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------CcEEEeccCCcC
Confidence 5 44 3689999999843 1 23445567999999999999765 99999875 479999988632
Q ss_pred EEEEEeccC-CCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC--c--EEEEEccCCCceE
Q 000992 262 RSSFDINEQ-IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--G--IRFMWHPTKPLQL 335 (1196)
Q Consensus 262 ~~~f~l~~~-~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~--~--~~v~Wsp~~~~~L 335 (1196)
..|+.... ....|..|+||- ...+||+++.++ .+-|||+... ++.+.+.... . ..+.|||+...++
T Consensus 151 -tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg---~~~iWDlr~~----~pii~ls~~~~~~~~S~l~WhP~~aTql 222 (1049)
T KOG0307|consen 151 -TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSG---RAVIWDLRKK----KPIIKLSDTPGRMHCSVLAWHPDHATQL 222 (1049)
T ss_pred -CCCCCCCCCCcccceEeccchhhhHHhhccCCCC---CceeccccCC----CcccccccCCCccceeeeeeCCCCceee
Confidence 22333211 235799999996 577999999998 7999999864 2344443222 1 5799999999888
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECC
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSD 414 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~d 414 (1196)
.+.+.+.+ .-.|++|++|-...|- +.+ .|...|.+++|++.++ .+|++.+.|
T Consensus 223 ~~As~dd~----------------------~PviqlWDlR~assP~----k~~~~H~~GilslsWc~~D~-~lllSsgkD 275 (1049)
T KOG0307|consen 223 LVASGDDS----------------------APVIQLWDLRFASSPL----KILEGHQRGILSLSWCPQDP-RLLLSSGKD 275 (1049)
T ss_pred eeecCCCC----------------------CceeEeecccccCCch----hhhcccccceeeeccCCCCc-hhhhcccCC
Confidence 88775421 1257788888766543 334 4888899999999984 678899999
Q ss_pred CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCe-EEEEEecCCCCceEEEEe
Q 000992 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL-LLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 415 g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~-lla~~~~~~~~~~~~~~~ 478 (1196)
+.|.+|+.++.+.+..+. ...+++..+.|.|.+- ++|+++-+ +.+-++++
T Consensus 276 ~~ii~wN~~tgEvl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfd--gkI~I~sl 326 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFD--GKISIYSL 326 (1049)
T ss_pred CCeeEecCCCceEeeecC------------CCCcceeeeeecCCCcchhhhheec--cceeeeee
Confidence 999999998754442221 1346899999988654 45544332 34555554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-14 Score=156.55 Aligned_cols=261 Identities=18% Similarity=0.093 Sum_probs=170.0
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
+.+|.+.|++++||.||+.||++++|++|++|+ ++|....-.++... | ..+.-+.+.|+||.+-++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-----v-------e~dhpT~V~FapDc~s~v- 148 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-----V-------EYDHPTRVVFAPDCKSVV- 148 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-----c-------cCCCceEEEECCCcceEE-
Confidence 445789999999999999999999999999997 56543222222111 1 012337899999999888
Q ss_pred eeccccccCCCCEEEEEEC---CCCcEEEEecc---------CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 191 LSEFCNSSKLHKRLKVWER---DSGTLQASSEL---------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~---~~G~l~~~~e~---------~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
++-.. ..+++||-. .+|.....+-+ |.-.+.++-.--.+.+|+|++.|. +|.+|+..
T Consensus 149 v~~~~-----g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt------~i~lw~lk 217 (420)
T KOG2096|consen 149 VSVKR-----GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDT------KICLWDLK 217 (420)
T ss_pred EEEcc-----CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCC------cEEEEecC
Confidence 66532 368888854 24543333222 333456777788899999999864 69999987
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
|...+..... ...-...+-||||++||+++-.. -|++|.. .|
T Consensus 218 Gq~L~~idtn---q~~n~~aavSP~GRFia~~gFTp---DVkVwE~-----------~f--------------------- 259 (420)
T KOG2096|consen 218 GQLLQSIDTN---QSSNYDAAVSPDGRFIAVSGFTP---DVKVWEP-----------IF--------------------- 259 (420)
T ss_pred Cceeeeeccc---cccccceeeCCCCcEEEEecCCC---CceEEEE-----------Ee---------------------
Confidence 8665533211 22344678999999999988766 5888742 12
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v 417 (1196)
+.+|++....-+ ++| +|.+.|...+||++. ..+++++.||++
T Consensus 260 ~kdG~fqev~rv-----------------------------------f~LkGH~saV~~~aFsn~S--~r~vtvSkDG~w 302 (420)
T KOG2096|consen 260 TKDGTFQEVKRV-----------------------------------FSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKW 302 (420)
T ss_pred ccCcchhhhhhh-----------------------------------heeccchhheeeeeeCCCc--ceeEEEecCCcE
Confidence 112322100000 123 478899999999999 899999999999
Q ss_pred EEEeCCCCCccccccCCceeeeeec--c-cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 418 CVVDLPAPDMLEDLEGTEFVVEACI--S-ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~--~-~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+||+.+-.-. .|...+++... + .........++.+|+|+.||+++. +.+.++..
T Consensus 303 riwdtdVrY~----~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~s 359 (420)
T KOG2096|consen 303 RIWDTDVRYE----AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFAS 359 (420)
T ss_pred EEeeccceEe----cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEc
Confidence 9999864211 11122211111 1 011124457899999999998775 45555543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=173.48 Aligned_cols=273 Identities=17% Similarity=0.160 Sum_probs=190.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC--eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~--~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
++-+.|.|-|+|+.|++++.||.|++|+.... ..++.-. .+....+..-++..+++++.+++|.+.+.. ....+.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp-s~~~~~ 90 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--SGELVSSIACYSNHFLTGSEQNTVLRYKFP-SGEEDT 90 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc--cCceeEEEeecccceEEeeccceEEEeeCC-CCCccc
Confidence 56899999999999999999999999997653 2232221 334455556677899999999999886521 000000
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
-+. ...-.+..++++++|+++| .++ .|-.|++-+..++....++++|++.|.+|.|.|.
T Consensus 91 iL~--------------Rftlp~r~~~v~g~g~~ia-ags------dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~ 149 (933)
T KOG1274|consen 91 ILA--------------RFTLPIRDLAVSGSGKMIA-AGS------DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPK 149 (933)
T ss_pred eee--------------eeeccceEEEEecCCcEEE-eec------CceeEEEEeccccchheeecccCCceeeeeEcCC
Confidence 000 0112457899999999999 576 4688999999888888999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEecc--C----C-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE--Q----I-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~--~----~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
|+++|+++-++ .|.+|+.. |... +++.+ + . ...+..++|+|+|-.||+...|+ +|++++..
T Consensus 150 ~~fLAvss~dG------~v~iw~~~~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~ 218 (933)
T KOG1274|consen 150 GNFLAVSSCDG------KVQIWDLQDGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN---TVKVYSRK 218 (933)
T ss_pred CCEEEEEecCc------eEEEEEcccchhh--hhcccCCccccccccceeeeeeecCCCCeEEeeccCC---eEEEEccC
Confidence 99999999864 69999954 2111 12220 1 0 22367899999988888888887 89999999
Q ss_pred CCEEEEEEEEEEec-CC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 306 NNHWYLKYEIRYLR-RD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 306 n~~wylkq~l~~~~-~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
+|.- -..++... .. ...+.|+|.|.+ |+..+.+|++.+ |++. +
T Consensus 219 ~we~--~f~Lr~~~~ss~~~~~~wsPnG~Y-iAAs~~~g~I~v----Wnv~-------------t--------------- 263 (933)
T KOG1274|consen 219 GWEL--QFKLRDKLSSSKFSDLQWSPNGKY-IAASTLDGQILV----WNVD-------------T--------------- 263 (933)
T ss_pred Ccee--heeecccccccceEEEEEcCCCcE-EeeeccCCcEEE----Eecc-------------c---------------
Confidence 8643 22222211 12 267899999765 777777777653 3322 1
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+..-+....|.+.+|-|+. +.+-..+..|+..+|-
T Consensus 264 -~~~~~~~~~Vc~~aw~p~~--n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 264 -HERHEFKRAVCCEAWKPNA--NAITLITALGTLGVSP 298 (933)
T ss_pred -chhccccceeEEEecCCCC--CeeEEEeeccccccCh
Confidence 0112245678899999998 6777666666665553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=154.52 Aligned_cols=113 Identities=17% Similarity=0.263 Sum_probs=86.2
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
.-++|.|---+|| |++..++ ..+.|-||-- +|+.+.--+ .+-.+.+++|+|.--.+|++=. -..+.+|.
T Consensus 19 ti~SWHPsePlfA-VA~fS~e--r~GSVtIfad-tGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe------~g~~~v~~ 87 (1416)
T KOG3617|consen 19 TISSWHPSEPLFA-VASFSPE--RGGSVTIFAD-TGEPQRDVT-YPVHATSLCWHPEEFVLAQGWE------MGVSDVQK 87 (1416)
T ss_pred cccccCCCCceeE-EEEecCC--CCceEEEEec-CCCCCcccc-cceehhhhccChHHHHHhhccc------cceeEEEe
Confidence 4468999999999 8988775 4578999877 888654322 1223478999999988888754 34678888
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.|..... +.+.++...|.-|.|||||..|.++..-+ .|.+|...
T Consensus 88 ~~~~e~h--tv~~th~a~i~~l~wS~~G~~l~t~d~~g---~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETH--TVVETHPAPIQGLDWSHDGTVLMTLDNPG---SVHLWRYD 131 (1416)
T ss_pred cCCceee--eeccCCCCCceeEEecCCCCeEEEcCCCc---eeEEEEee
Confidence 7743222 44556677899999999999999998888 89999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-14 Score=153.67 Aligned_cols=285 Identities=15% Similarity=0.118 Sum_probs=177.2
Q ss_pred eEEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 108 ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 108 ~~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
-.|+-+.-++.|.+++||| +..+|+.+|.|++|++|.-.-. +.... ..-+.|+..+.+++|+-||.
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~---g~~~~----------ka~~~~~~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS---GQLVP----------KAQQSHDGPVLDVCWSDDGS 85 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecC---Ccccc----------hhhhccCCCeEEEEEccCCc
Confidence 3455566678999999999 5566668889999988753211 01000 01124567889999999998
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC--eEEEEecCCCCCCCCeEEEEeC-CCeeEE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRKSENKCPSIVFYER-NGLERS 263 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~--~IAs~s~d~~~~~~~~V~~~e~-nGl~~~ 263 (1196)
.++ +++ -|+.+++||..+|+....- .|++.+..+.|=+-.+ .|++||.|+ +|+|||. +-...
T Consensus 86 kVf-~g~------~Dk~~k~wDL~S~Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDK------TlKfWD~R~~~pv- 150 (347)
T KOG0647|consen 86 KVF-SGG------CDKQAKLWDLASGQVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDK------TLKFWDTRSSNPV- 150 (347)
T ss_pred eEE-eec------cCCceEEEEccCCCeeeee-ecccceeEEEEecCCCcceeEeccccc------ceeecccCCCCee-
Confidence 777 565 3689999999999776654 4999999999988887 899999986 5999994 22211
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCC
Q 000992 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g 342 (1196)
+++..| ++|+++ .---.+++++..++ .|.++++.|.--..| .+..+-+.. .+++-.+++.. .++++-.|
T Consensus 151 -~t~~LP--eRvYa~--Dv~~pm~vVata~r---~i~vynL~n~~te~k-~~~SpLk~Q~R~va~f~d~~~-~alGsiEG 220 (347)
T KOG0647|consen 151 -ATLQLP--ERVYAA--DVLYPMAVVATAER---HIAVYNLENPPTEFK-RIESPLKWQTRCVACFQDKDG-FALGSIEG 220 (347)
T ss_pred -eeeecc--ceeeeh--hccCceeEEEecCC---cEEEEEcCCCcchhh-hhcCcccceeeEEEEEecCCc-eEeeeecc
Confidence 223333 234433 22345788898888 799999987531111 111111112 45555555544 25555455
Q ss_pred cEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCC---CEEEEEEecCCCCCEEEEEECCCcEE
Q 000992 343 QITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT---AVTEMAFYSKSSKNCLAAILSDGCLC 418 (1196)
Q Consensus 343 ~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~---~V~~Vafspdg~~~~lAs~~~dg~v~ 418 (1196)
.+.+. .++ +++...=.+|+ |+++-. ..+ .|++|+|+|.- ..|+++++||++.
T Consensus 221 rv~iq----~id----------~~~~~~nFtFk--------CHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsDGtf~ 276 (347)
T KOG0647|consen 221 RVAIQ----YID----------DPNPKDNFTFK--------CHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSDGTFS 276 (347)
T ss_pred eEEEE----ecC----------CCCccCceeEE--------EeccCCCCCCceEEecceEeeccc--ceEEEecCCceEE
Confidence 44322 111 11100000111 222111 111 47899999987 8999999999999
Q ss_pred EEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEe
Q 000992 419 VVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSH 466 (1196)
Q Consensus 419 lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~ 466 (1196)
+||-+....+.+- +.+...+..-+|..+|.++|.+.
T Consensus 277 FWDkdar~kLk~s------------~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 277 FWDKDARTKLKTS------------ETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred Eecchhhhhhhcc------------CcCCCccceeEecCCCCEEEEEe
Confidence 9998764333110 12223566778899999887654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.9e-15 Score=169.06 Aligned_cols=308 Identities=14% Similarity=0.133 Sum_probs=201.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCE--EEEEeCCceEEEEeccCc-eee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDL--LGVTTGFGQILVMTHDWD-LLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~--LA~~s~d~tV~l~~~~~d-~~~ 151 (1196)
.+.|++|.-.|-|+.||+|+.||+|++|.+.|+.+--.-..++.|.|++|+|.+.. ||++.++. +.+.+..+- -+.
T Consensus 400 tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 400 TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE 478 (733)
T ss_pred CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence 47899999999999999999999999999999887533335788999999999875 66666654 544432221 111
Q ss_pred ----eeeccccc-----Cccccc-----cCccc-------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC
Q 000992 152 ----ENPLEELA-----EGFDVH-----EPELS-------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1196)
Q Consensus 152 ----~~~l~~~~-----~~~~Vs-----~tqf~-------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~ 210 (1196)
...+.... ..+.+. ..|.. .|...|.+++|..+|.|||+|.. + ++.+.|-|.+..
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~-~---~~~~~VliHQLS 554 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMP-D---SGNKSVLIHQLS 554 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEecc-C---CCcceEEEEecc
Confidence 01111110 111111 00111 46778899999999999996543 3 356789999986
Q ss_pred CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEE
Q 000992 211 SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 211 ~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs 289 (1196)
.+..+.-+....|.+..+.|+|.-.++..++. ..|++|+..- ++.+-. .++.-+|.+++.+|.|.-|..
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-------~~vRiYdL~k---qelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-------RSVRIYDLSK---QELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEEec-------cceEEEehhH---HHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 66666666667889999999999987777664 3599998531 111000 233457999999999999999
Q ss_pred EEccCCcceEEEEEecC-CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 290 VVRFEEYDSVKICFFSN-NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n-~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
++.|+ .+..+|+.- .+-| +.+..|......|++|+-=|+ ++.++.||.+.++.-. + -+|. -++
T Consensus 625 gs~d~---k~~WfDldlsskPy--k~lr~H~~avr~Va~H~ryPL-fas~sdDgtv~Vfhg~--V-Y~Dl-------~qn 688 (733)
T KOG0650|consen 625 GSYDK---KMCWFDLDLSSKPY--KTLRLHEKAVRSVAFHKRYPL-FASGSDDGTVIVFHGM--V-YNDL-------LQN 688 (733)
T ss_pred ecCCC---eeEEEEcccCcchh--HHhhhhhhhhhhhhhccccce-eeeecCCCcEEEEeee--e-ehhh-------hcC
Confidence 99998 677777651 1111 355566555688999998775 6777777876542211 0 0000 001
Q ss_pred EEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 369 l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
-++-|++. +..+...-.-.|.++.|+|.- -.|.+++.||+|++|.
T Consensus 689 pliVPlK~------L~gH~~~~~~gVLd~~wHP~q--pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 689 PLIVPLKR------LRGHEKTNDLGVLDTIWHPRQ--PWLFSAGADGTIRLFT 733 (733)
T ss_pred CceEeeee------ccCceeecccceEeecccCCC--ceEEecCCCceEEeeC
Confidence 12333321 001111122348899999998 7999999999999983
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=164.62 Aligned_cols=275 Identities=12% Similarity=0.090 Sum_probs=193.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.|+-|| .+.+.+++.|+.|..||.+ .... ..+ |.+| .+.|.+++|- .+.|++||+|.||++
T Consensus 199 gVYClQYD--D~kiVSGlrDnTikiWD~n--~~~c-~~~------L~GH----tGSVLCLqyd--~rviisGSSDsTvrv 261 (499)
T KOG0281|consen 199 GVYCLQYD--DEKIVSGLRDNTIKIWDKN--SLEC-LKI------LTGH----TGSVLCLQYD--ERVIVSGSSDSTVRV 261 (499)
T ss_pred ceEEEEec--chhhhcccccCceEEeccc--cHHH-HHh------hhcC----CCcEEeeecc--ceEEEecCCCceEEE
Confidence 56666665 4678888899999999984 2222 112 4555 4789999986 469999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||.+++++ .+.=+|...|..+.||. .+++++|.|.++.+|... .|......+.. .||-..|..+.
T Consensus 262 WDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~-sps~it~rrVL-----------vGHrAaVNvVd 327 (499)
T KOG0281|consen 262 WDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMA-SPTDITLRRVL-----------VGHRAAVNVVD 327 (499)
T ss_pred EeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEecc-CchHHHHHHHH-----------hhhhhheeeec
Confidence 99999875 34445678899999985 499999999999998532 11111111111 15556677888
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-C
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-G 259 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-G 259 (1196)
|+ .+|++ ++| +|||||+|+..++++..+..+|...+.++.+ .|++++|||.| ++|++||.. |
T Consensus 328 fd--~kyIV-sAS------gDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSD------ntIRlwdi~~G 390 (499)
T KOG0281|consen 328 FD--DKYIV-SAS------GDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD------NTIRLWDIECG 390 (499)
T ss_pred cc--cceEE-Eec------CCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCC------ceEEEEecccc
Confidence 84 56998 465 6899999999999999999999877777655 58999999986 579999953 3
Q ss_pred eeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 260 LERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 260 l~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
. .|+ ..++.-|..|.| |.+.+++|..|+ +|++|+..... .+.. |.+..+|..
T Consensus 391 ~-----cLRvLeGHEeLvRciRF--d~krIVSGaYDG---kikvWdl~aal---------dpra-------~~~~~Cl~~ 444 (499)
T KOG0281|consen 391 A-----CLRVLEGHEELVRCIRF--DNKRIVSGAYDG---KIKVWDLQAAL---------DPRA-------PASTLCLRT 444 (499)
T ss_pred H-----HHHHHhchHHhhhheee--cCceeeeccccc---eEEEEeccccc---------CCcc-------cccchHHHh
Confidence 2 233 234567889998 567899999999 99999987531 0000 112222211
Q ss_pred Ee-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc
Q 000992 338 WT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 338 ~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
.. .+|.+ |...+++..+++...++++++|+|-.
T Consensus 445 lv~hsgRV------FrLQFD~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 445 LVEHSGRV------FRLQFDEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred hhhcccee------EEEeecceEEEeccCCCeEEEEEcCC
Confidence 11 13333 33334566778888888999999853
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-14 Score=149.31 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=198.0
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+.| |+.+|+-+.++.||.+|.+++.|.+..+|= .+++.+-+ .. +|.+.|+++.-.-|.+++.
T Consensus 6 l~G-HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt-----y~-----------GHtGavW~~Did~~s~~li 68 (327)
T KOG0643|consen 6 LQG-HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT-----YD-----------GHTGAVWCCDIDWDSKHLI 68 (327)
T ss_pred ccc-CccccceEEecCCCcEEEEecCCCCceEEEecCCceeee-----ec-----------CCCceEEEEEecCCcceee
Confidence 344 699999999999999999999999998883 24443333 22 6778899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee----EEE-
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE----RSS- 264 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~----~~~- 264 (1196)
.++ .|.++|+||..+|+.+.+.+ ....+..+.|+++|++++.+.++. ......|-+|+..... ..+
T Consensus 69 -TGS------AD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~-mg~~~~v~~fdi~~~~~~~~s~ep 139 (327)
T KOG0643|consen 69 -TGS------ADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQ-MGYTCFVSVFDIRDDSSDIDSEEP 139 (327)
T ss_pred -ecc------ccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhh-cCcceEEEEEEccCChhhhcccCc
Confidence 576 46899999999999999887 556789999999999998887653 2234567788743111 111
Q ss_pred -EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 265 -FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 265 -f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
..++.+ +..+...-|+|-|+.|.++.+++ .|.+||..|..- +.+....|......+.++|+... +..++.
T Consensus 140 ~~kI~t~-~skit~a~Wg~l~~~ii~Ghe~G---~is~~da~~g~~-~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~--- 210 (327)
T KOG0643|consen 140 YLKIPTP-DSKITSALWGPLGETIIAGHEDG---SISIYDARTGKE-LVDSDEEHSSKINDLQFSRDRTY-FITGSK--- 210 (327)
T ss_pred eEEecCC-ccceeeeeecccCCEEEEecCCC---cEEEEEcccCce-eeechhhhccccccccccCCcce-EEeccc---
Confidence 123333 46799999999999999999999 899999998642 23333333333366777777643 222221
Q ss_pred EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+.+-+++++. .-++.++.....||++.|++|-. ..+..++...-.-+-...
T Consensus 211 ----------------------Dttakl~D~~-----tl~v~Kty~te~PvN~aaisP~~--d~VilgGGqeA~dVTTT~ 261 (327)
T KOG0643|consen 211 ----------------------DTTAKLVDVR-----TLEVLKTYTTERPVNTAAISPLL--DHVILGGGQEAMDVTTTS 261 (327)
T ss_pred ----------------------Cccceeeecc-----ceeeEEEeeecccccceeccccc--ceEEecCCceeeeeeeec
Confidence 1233333332 12344566678899999999987 555555433222222211
Q ss_pred CCCccccccCCceeee-------eec--ccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 424 APDMLEDLEGTEFVVE-------ACI--SETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 424 ~~~~~~~~~g~~~~~~-------~~~--~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+ ..|+ |..- ..+ ..+|.+.+..++|+|+|+..++++-+ ..+.++.+
T Consensus 262 ~------r~GK-FEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGED--G~VR~h~F 316 (327)
T KOG0643|consen 262 T------RAGK-FEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGED--GYVRLHHF 316 (327)
T ss_pred c------cccc-hhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCC--ceEEEEEe
Confidence 1 1221 1100 011 14678899999999999988876554 56666655
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=154.62 Aligned_cols=246 Identities=10% Similarity=0.071 Sum_probs=178.7
Q ss_pred cceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 21 EILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 21 ~~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
+.+.+++|.|..+.+.+++. |+.+..|++. ..+.. .|....++ .+.|.++.|+-||..+.+|+.||.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq-~~g~~------~~ka~~~~----~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQ-NSGQL------VPKAQQSH----DGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEe-cCCcc------cchhhhcc----CCCeEEEEEccCCceEEeeccCCce
Confidence 38999999998887887755 9999999983 11211 11112222 4789999999999999999999999
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCC--EEEEEeCCceEEEEe-ccCceeeeeeccccc--------------Ccc
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGD--LLGVTTGFGQILVMT-HDWDLLYENPLEELA--------------EGF 162 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~--~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~--------------~~~ 162 (1196)
++||+.+++...+|.|+++|.++.|=+-.. .|++||.|+||+.|+ |.-.++..+.+..-- ...
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 999999999999999999999999977665 899999999999986 655666655443221 011
Q ss_pred cc---c----cCcccc----CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--------cEEEEeccCC-
Q 000992 163 DV---H----EPELSS----SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--------TLQASSELKA- 222 (1196)
Q Consensus 163 ~V---s----~tqf~~----~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--------~l~~~~e~~~- 222 (1196)
+| + .++|+. -.-.+.+|+-..|++-+| +++++ +.+-|...+.+ ++++...+..
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-lGsiE------Grv~iq~id~~~~~~nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-LGSIE------GRVAIQYIDDPNPKDNFTFKCHRSTNSVND 249 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-eeeec------ceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence 11 1 344552 233578999999999889 89864 56667666555 2333222222
Q ss_pred --CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000992 223 --FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 223 --~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
..|++|+|.|.-..||+++.|+ +..|||++-. +.-++. ..+...|..-+||.+|.++|-+..
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDG------tf~FWDkdar-~kLk~s-~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDG------TFSFWDKDAR-TKLKTS-ETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceEEecceEeecccceEEEecCCc------eEEEecchhh-hhhhcc-CcCCCccceeEecCCCCEEEEEee
Confidence 2478999999999999998864 6999998642 221111 234567999999999999998864
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-15 Score=178.22 Aligned_cols=218 Identities=14% Similarity=0.064 Sum_probs=135.9
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~ 151 (1196)
..+.+..|||||+.|+.++.+ .+|.+||..+++...+....+...+++|||||+.||+++ .+|.+.+|..+-+.-.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT 283 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC
Confidence 468999999999999988754 369999999876554444445566899999999999875 5777766632211000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slaw 230 (1196)
...+. .+...+..++|+|||+.+++++. .++..+||+.+ .|...... .+.+ ..++|
T Consensus 284 ~~~lt--------------~~~~~~~~~~wSpDG~~i~f~s~------~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~ 340 (429)
T PRK01742 284 PSQLT--------------SGAGNNTEPSWSPDGQSILFTSD------RSGSPQVYRMSASGGGASLV-GGRG--YSAQI 340 (429)
T ss_pred eEeec--------------cCCCCcCCEEECCCCCEEEEEEC------CCCCceEEEEECCCCCeEEe-cCCC--CCccC
Confidence 01111 12234578999999998884332 23456666542 23222222 2333 46789
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
||||+.||.++.+ .+..|+..+..... +..+ ....+++|||||+.|+.++.++ .+++|.+-+....
T Consensus 341 SpDG~~ia~~~~~-------~i~~~Dl~~g~~~~--lt~~--~~~~~~~~sPdG~~i~~~s~~g---~~~~l~~~~~~G~ 406 (429)
T PRK01742 341 SADGKTLVMINGD-------NVVKQDLTSGSTEV--LSST--FLDESPSISPNGIMIIYSSTQG---LGKVLQLVSADGR 406 (429)
T ss_pred CCCCCEEEEEcCC-------CEEEEECCCCCeEE--ecCC--CCCCCceECCCCCEEEEEEcCC---CceEEEEEECCCC
Confidence 9999999988753 35667754322111 2111 1245789999999999999887 5666664322222
Q ss_pred EEEEEEEecCCcEEEEEccC
Q 000992 311 LKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~ 330 (1196)
..+.+..+........|||-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 34455433222366788874
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=165.46 Aligned_cols=264 Identities=13% Similarity=0.081 Sum_probs=186.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+.|=..+++++.+..|..|..|+. .....+ .+.+ |.+- .+.|+++.|-+++..+..++.|++.++
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v--~~~k~~-~~~t----LaGs----~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNV--LGEKSE-LIST----LAGS----LGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhc--ccchhh-hhhh----hhcc----CCCcceeeecCCCceEEeecCCCceee
Confidence 5666778888899999988888999998 333321 2232 3322 467999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||.+..+. ..+..|.+.|+++.|.-+...+++++.|.+|++ ||.-...+..+.- .+ ..+..|.
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~----WDl~k~~C~kt~l----------~~--S~cnDI~ 309 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKL----WDLQKAYCSKTVL----------PG--SQCNDIV 309 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhh----hhhhhhheecccc----------cc--ccccceE
Confidence 99998655 344448999999999999888999999999965 5544444333211 00 1122333
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
-+ +..++ |++ .|++||.||...+.+...-+ ..|.+.++..+++|..|.++++|. ++.+++..+.
T Consensus 310 ~~--~~~~~--SgH-----~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~~g~~lLsssRDd------tl~viDlRt~ 373 (459)
T KOG0288|consen 310 CS--ISDVI--SGH-----FDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSMDGLELLSSSRDD------TLKVIDLRTK 373 (459)
T ss_pred ec--ceeee--ecc-----cccceEEEeccCCceeeEee-cCcceeeEeeccCCeEEeeecCCC------ceeeeecccc
Confidence 33 33444 343 46889999965777777655 456899999999999999988864 5777875443
Q ss_pred eE-EEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC--cEEEEEccCCCc
Q 000992 261 ER-SSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPL 333 (1196)
Q Consensus 261 ~~-~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~ 333 (1196)
.. +.|.-.+ .-...+..+.|||||.++|.|+.|+ .|.||++.+.+. -..+..+... ++++.|+|.|..
T Consensus 374 eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg---sv~iW~v~tgKl--E~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 374 EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG---SVYIWSVFTGKL--EKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred cEEEEeeccccccccccceeEECCCCceeeeccCCC---cEEEEEccCceE--EEEeccCCCCcceEEEEEcCCCch
Confidence 32 2222111 0122478899999999999999999 999999988753 1222222222 388999998865
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=170.83 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=188.2
Q ss_pred eeecCCCE-EEEEeCCCcEEEEeccccccc-ccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 27 ALDIEQNR-LFFASSANNIYSAQLSSFQNE-RASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 27 ~~d~~~~~-l~~~s~~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
-.|.-++. ||+++-|+.|+.|+.+...++ .+.-+.+ +..| .++|.++..--+|+.|+++|.|-+|++|+.
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~as----me~H----sDWVNDiiL~~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIAS----MEHH----SDWVNDIILCGNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccccccCCcccchhhh----hhhh----HhHHhhHHhhcCCCceEEecCCceEEEeec
Confidence 35655555 999999999999998411111 1100111 3333 479999999999999999999999999998
Q ss_pred CCC---eEEEeeeecCcEEEEEE-CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 105 DGN---ATEVVGRVEGGVRFISP-SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 105 ~~~---~~e~vg~~~~~I~~~aw-SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
..+ -+.++|.|++.|.|++. -++.+++|+|+-|+.|.+|+.. ...+...+... ...++.+ -.++.+++.+++
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin--~~~~~l~~s~n-~~t~~sl-~sG~k~siYSLA 178 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN--TGTATLVASFN-NVTVNSL-GSGPKDSIYSLA 178 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc--Ccchhhhhhcc-ccccccC-CCCCccceeeee
Confidence 754 23588999999999999 9999999999999999998643 11111111111 0011000 015667899999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
=.+.|..|+ .|+ -.+.+|+||..+++-...+.+|..-|..|--++||+.+.|+|.|+ +|++|+.+ .
T Consensus 179 ~N~t~t~iv-sGg------tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg------tIrlWdLg-q 244 (735)
T KOG0308|consen 179 MNQTGTIIV-SGG------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG------TIRLWDLG-Q 244 (735)
T ss_pred cCCcceEEE-ecC------cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc------eEEeeecc-c
Confidence 999997777 454 248899999999999999999999999999999999999999975 69999985 3
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++-.+++..|. ..|+++.-||+=+.+-+|+.|+ .|..=++.|+
T Consensus 245 QrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~---~i~~Tdl~n~ 287 (735)
T KOG0308|consen 245 QRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDG---NIYRTDLRNP 287 (735)
T ss_pred cceeeeEEecc-CceEEEeeCCCcceEEecCCCC---cEEecccCCc
Confidence 44445555553 4599999999999999999999 7777777775
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=164.64 Aligned_cols=272 Identities=14% Similarity=0.192 Sum_probs=187.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
...|.+++|- .+.+++|+.|.||++||.++..+. ++-+|.+.|.|+.+ |.+.|++||.|.||++|+ .-++.
T Consensus 197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWD----v~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWD----VNTGE 268 (499)
T ss_pred CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEe----ccCCc
Confidence 4679999884 678999999999999999986653 44457999999998 567999999999999875 22333
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slaw 230 (1196)
++.+.- +|.+.|..+.|+ +| |++| +| .|++++|||...- .+...+-+|...|+.+.|
T Consensus 269 ~l~tli-----------hHceaVLhlrf~-ng-~mvt-cS------kDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf 328 (499)
T KOG0281|consen 269 PLNTLI-----------HHCEAVLHLRFS-NG-YMVT-CS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 328 (499)
T ss_pred hhhHHh-----------hhcceeEEEEEe-CC-EEEE-ec------CCceeEEEeccCchHHHHHHHHhhhhhheeeecc
Confidence 333222 455677888887 34 5663 44 4799999998322 222345578888999998
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEE--eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFD--INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~--l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+.. +|+|+|.|. +|+.|+.. .++|. +.++ ...|-.+.+ .|+++++|++|. ||+||+...+.
T Consensus 329 d~k--yIVsASgDR------TikvW~~s---t~efvRtl~gH-kRGIAClQY--r~rlvVSGSSDn---tIRlwdi~~G~ 391 (499)
T KOG0281|consen 329 DDK--YIVSASGDR------TIKVWSTS---TCEFVRTLNGH-KRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA 391 (499)
T ss_pred ccc--eEEEecCCc------eEEEEecc---ceeeehhhhcc-cccceehhc--cCeEEEecCCCc---eEEEEeccccH
Confidence 654 999999864 69999965 45553 2233 234555544 689999999999 99999988654
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC----CCce
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP----PPMY 384 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp----ppm~ 384 (1196)
. -..+..|..-..++.|+.+ ++..+.-|| ++++|+|..+.-| ..+|
T Consensus 392 c--LRvLeGHEeLvRciRFd~k---rIVSGaYDG-------------------------kikvWdl~aaldpra~~~~~C 441 (499)
T KOG0281|consen 392 C--LRVLEGHEELVRCIRFDNK---RIVSGAYDG-------------------------KIKVWDLQAALDPRAPASTLC 441 (499)
T ss_pred H--HHHHhchHHhhhheeecCc---eeeeccccc-------------------------eEEEEecccccCCcccccchH
Confidence 2 1233333322355556542 233332233 4566666554443 2355
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..++ +|.+.|..+-|-. ..+.+.++|.+|-+|++.+.
T Consensus 442 l~~lv~hsgRVFrLQFD~----fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 442 LRTLVEHSGRVFRLQFDE----FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred HHhhhhccceeEEEeecc----eEEEeccCCCeEEEEEcCCC
Confidence 5555 6888999888764 57888889999999999753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-14 Score=145.15 Aligned_cols=267 Identities=9% Similarity=0.003 Sum_probs=195.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+.-|+.||+-...|..|..+..|++ -.+.. |.| ..+| +..|.+++-+.|...+|+++.|..|.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp--~rg~l---ikt----Ysgh----G~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNP--LRGAL---IKT----YSGH----GHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecc--cccce---eee----ecCC----CceeeeccccccccccccCCCCceEEE
Confidence 6888899999999999999999999998 44433 232 3445 458999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe---ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~---~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
||.+||++ ...+.|.+.|++++|+-+...+++++-|.++++|+ +.++|+.-.. ...++|.
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild----------------ea~D~V~ 149 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD----------------EAKDGVS 149 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh----------------hhcCcee
Confidence 99999876 46777899999999999999999999999999996 4455542211 1235677
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+|.-.. .-++ .+|+ |+++|.||...|++.+-. ...++++++|||||+....++-+ .++++.++
T Consensus 150 Si~v~~--heIv-aGS~------DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~------stlrLlDk 212 (307)
T KOG0316|consen 150 SIDVAE--HEIV-AGSV------DGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLD------STLRLLDK 212 (307)
T ss_pred EEEecc--cEEE-eecc------CCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeecc------ceeeeccc
Confidence 777653 3344 3553 689999999889876533 34568999999999988777775 46999986
Q ss_pred C-CeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-cEEEEEccCCCce
Q 000992 258 N-GLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQ 334 (1196)
Q Consensus 258 n-Gl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~ 334 (1196)
. |...+.+. ++. ...=...+++..-+.++++++|+ .|.+|++-+.+-..|- ..+..- ...+.+||..+.
T Consensus 213 ~tGklL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd~~~~sk~--~~~~~v~v~dl~~hp~~~~- 284 (307)
T KOG0316|consen 213 ETGKLLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVDETQISKL--SVVSTVIVTDLSCHPTMDD- 284 (307)
T ss_pred chhHHHHHhc--ccccceeeeeeeecccceeEEeccCCc---eEEEEEeccceeeeee--ccCCceeEEeeecccCccc-
Confidence 4 43322221 111 11123567788888999999999 8999999987643322 222111 267899998765
Q ss_pred EEEEecCC
Q 000992 335 LICWTLDG 342 (1196)
Q Consensus 335 L~~~~~~g 342 (1196)
+++.+..+
T Consensus 285 f~~A~~~~ 292 (307)
T KOG0316|consen 285 FITATGHG 292 (307)
T ss_pred eeEecCCc
Confidence 66665433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-15 Score=154.26 Aligned_cols=236 Identities=14% Similarity=0.091 Sum_probs=171.8
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEECCC--CeEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCcee
Q 000992 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDG--NATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~--~~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
.+.+-+|+|++.- .++++++.||.++|||..- +.+.+...|...|.++-|++- ++.+++.|-|+||++|.. .
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~----~ 135 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDP----N 135 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecC----C
Confidence 5789999999976 4677889999999999542 445567778999999999985 566777789999988753 2
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~sl 228 (1196)
....+ ..|.+|.+.|....||| ++..|| +.| +|+++|+||.+ .|+.+. .+.|...+-+.
T Consensus 136 r~~Sv-----------~Tf~gh~~~Iy~a~~sp~~~nlfa-s~S------gd~~l~lwdvr~~gk~~~-i~ah~~Eil~c 196 (311)
T KOG0277|consen 136 RPNSV-----------QTFNGHNSCIYQAAFSPHIPNLFA-SAS------GDGTLRLWDVRSPGKFMS-IEAHNSEILCC 196 (311)
T ss_pred CCcce-----------EeecCCccEEEEEecCCCCCCeEE-Ecc------CCceEEEEEecCCCceeE-EEeccceeEee
Confidence 22222 23668889999999999 566788 444 57999999975 577766 67788788999
Q ss_pred EEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecC
Q 000992 229 EWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 229 awsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.|+.- -+++|+++.| ..|+.|+...++.-.|.|.+ ++-.|..|.|||-. .+||+++.|- |++||+...
T Consensus 197 dw~ky~~~vl~Tg~vd------~~vr~wDir~~r~pl~eL~g-h~~AVRkvk~Sph~~~lLaSasYDm---T~riw~~~~ 266 (311)
T KOG0277|consen 197 DWSKYNHNVLATGGVD------NLVRGWDIRNLRTPLFELNG-HGLAVRKVKFSPHHASLLASASYDM---TVRIWDPER 266 (311)
T ss_pred cccccCCcEEEecCCC------ceEEEEehhhccccceeecC-CceEEEEEecCcchhhHhhhccccc---eEEeccccc
Confidence 99985 4677888775 46999997666666677754 35679999999964 6999999999 999999763
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcE
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
.+- ++....-|......+.|++-.+..++....|+.+
T Consensus 267 ~ds-~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 267 QDS-AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred chh-hhhhhhccceEEeccccccccCceeeecccccce
Confidence 321 1111111111124577888766555544444444
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.9e-15 Score=163.74 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=189.5
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.++|.+++=+|.. ..+++|+.||.|+|||.....+ .....|.|-|..++++- +...+++.|++|+.|..+..++..
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~t 143 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHT 143 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCccee
Confidence 3788899989987 7899999999999999988654 36777899999999987 788999999999999877655544
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
+.... .+..|.=.--+..||| ++ ..|-|||.+--..++.+.-....+.++.|+|
T Consensus 144 ilg~s-----------------~~~gIdh~~~~~~FaT-cG--------e~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 144 ILGKS-----------------VYLGIDHHRKNSVFAT-CG--------EQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred eeccc-----------------cccccccccccccccc-cC--------ceeeecccccCCccceeecCCCceeEEecCC
Confidence 33221 2233443344556884 33 5799999865556666655555679999999
Q ss_pred CCC-eEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 SGA-NIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 dG~-~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
--. .||++..|. .|++|| |.+.......+. -.-+.|+|||.+-...++.+|- .+..+|+.+.+
T Consensus 198 vETsILas~~sDr------sIvLyD~R~~~Pl~KVi~~----mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~-- 262 (433)
T KOG0268|consen 198 VETSILASCASDR------SIVLYDLRQASPLKKVILT----MRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLS-- 262 (433)
T ss_pred CcchheeeeccCC------ceEEEecccCCccceeeee----ccccceecCccccceeeccccc---cceehhhhhhc--
Confidence 764 678776654 588998 333322222222 2356899999999999999998 89999988754
Q ss_pred EEEEEEEecC---CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 311 LKYEIRYLRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 311 lkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
..+..+.+ ....+.|||.|.. +..++-|-++ ++.+.+.. -.+.
T Consensus 263 --~p~~v~~dhvsAV~dVdfsptG~E-fvsgsyDksI-------------------------RIf~~~~~------~SRd 308 (433)
T KOG0268|consen 263 --RPLNVHKDHVSAVMDVDFSPTGQE-FVSGSYDKSI-------------------------RIFPVNHG------HSRD 308 (433)
T ss_pred --ccchhhcccceeEEEeccCCCcch-hccccccceE-------------------------EEeecCCC------cchh
Confidence 33333322 2378899998865 4444433333 33333211 0111
Q ss_pred ecCC---CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 388 LKFP---TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 388 l~~~---~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
+-|. ..|.+|.||.|. +.+.+||.|+.|+||.....+
T Consensus 309 iYhtkRMq~V~~Vk~S~Ds--kyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYSMDS--KYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred hhhHhhhheeeEEEEeccc--cEEEecCCCcceeeeecchhh
Confidence 2221 258999999999 999999999999999986543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=158.14 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=187.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEee---eecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCcee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
.+.|++|+|+|..+.|.+|+-||+++||.++++.-+.+. -...+|.+++|.|+|+ .++++|.-.-+.. ||..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys----yDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS----YDLE 288 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE----eecc
Confidence 578999999999999999999999999999885322222 2246899999999999 6666555554544 4433
Q ss_pred eee--ecccccCccccccCccccC-CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 151 YEN--PLEELAEGFDVHEPELSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 151 ~~~--~l~~~~~~~~Vs~tqf~~~-~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
+.. .+++.- ++ ...+....-|+||+|+| ..+ ..+.|.+-...+++++.++. ..|.+..
T Consensus 289 ~ak~~k~~~~~-----------g~e~~~~e~FeVShd~~fia-~~G------~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 289 TAKVTKLKPPY-----------GVEEKSMERFEVSHDSNFIA-IAG------NNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred ccccccccCCC-----------CcccchhheeEecCCCCeEE-Ecc------cCceEEeehhhhhhhhheee-eccEEee
Confidence 221 111111 11 12345677899999999 665 35789999888999888776 6788999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
+.|+.||+.|.+++.+ ..|.+|+.+-. +-.......+...-.+++-|++|.+||+|+..| .|-||+.++.
T Consensus 350 ~~fsSdsk~l~~~~~~------GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G---iVNIYd~~s~ 419 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGT------GEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG---IVNIYDGNSC 419 (514)
T ss_pred EEEecCCcEEEEEcCC------ceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcc---eEEEeccchh
Confidence 9999999987766654 46999986532 111111112222345789999999999999999 9999997642
Q ss_pred EEE-EEEEEE-Eec--CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 308 HWY-LKYEIR-YLR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 308 ~wy-lkq~l~-~~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
.-- -.+.+. +.. ..+.++.|+|++.. |++.+. +.-.....+.- |+ .|-|+-| |++-
T Consensus 420 ~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi-LAiaS~-~~knalrLVHv--PS--------------~TVFsNf--P~~n 479 (514)
T KOG2055|consen 420 FASTNPKPIKTVDNLTTAITSLQFNHDAQI-LAIASR-VKKNALRLVHV--PS--------------CTVFSNF--PTSN 479 (514)
T ss_pred hccCCCCchhhhhhhheeeeeeeeCcchhh-hhhhhh-ccccceEEEec--cc--------------eeeeccC--CCCC
Confidence 100 000000 000 12367889998764 555542 11111111111 00 1223322 3221
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.. -+.|.||+|||.| ..||+|..+|.|.||.+.
T Consensus 480 --~~---vg~vtc~aFSP~s--G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 --TK---VGHVTCMAFSPNS--GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred --Cc---ccceEEEEecCCC--ceEEeecCCCceeeEeec
Confidence 11 1458999999988 799999999999999874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=165.94 Aligned_cols=255 Identities=14% Similarity=0.087 Sum_probs=192.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEE-EEEcc-CCCEEEEEECCCcEEEEECCCCeE
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITA-FDYLM-EKEALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~-v~~sp-d~~~La~as~dG~I~lw~~~~~~~ 109 (1196)
-.+.++|.|+.+..|.. -.++- +..+++. |.+.|.. +.|.+ |+-.|++|+.|++|.+|.+.+...
T Consensus 26 ~~i~s~sRd~t~~vw~~--~~~~~----------l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P 93 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAK--KGKQY----------LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP 93 (745)
T ss_pred eEEeecCCCCceeeeec--cCccc----------ccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCc
Confidence 35667777888888987 22221 2223343 3455655 88885 556799999999999999988643
Q ss_pred -EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 110 -EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 110 -e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.++-.|+..|.|++---|+. |+++|.|.|+++|. ..+..... ++|...|+.+..-|++.|+
T Consensus 94 ~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~-~~~l~~~l----------------~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 94 LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR-IGELVYSL----------------QGHTASVWAVASLPENTYV 155 (745)
T ss_pred hhhhhccccceeeeecCCcCc-eEecccccceEEec-chhhhccc----------------CCcchheeeeeecCCCcEE
Confidence 45555799999999998987 99999999999994 33443332 2677789999999999554
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
+++ .|++||+|.- |++++++.+|..-|+.++.=|++. ++|++.| ..|++|+..|....+ ..
T Consensus 156 --Tgs------aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsND------g~Ir~w~~~ge~l~~--~~ 216 (745)
T KOG0301|consen 156 --TGS------ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSND------GSIRLWDLDGEVLLE--MH 216 (745)
T ss_pred --ecc------CcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCC------ceEEEEeccCceeee--ee
Confidence 365 4799999986 889999999999999999999976 5566665 469999987754332 12
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.+++.|++++-.++++.++++++|+ +++||.... +.|.|..+..+.+++..=+.|. +.+++.||.+++
T Consensus 217 -ghtn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~e----~~q~I~lPttsiWsa~~L~NgD--Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 217 -GHTNFVYSISMALSDGLIVSTGEDR---TLRIWKKDE----CVQVITLPTTSIWSAKVLLNGD--IVVGGSDGRVRV 284 (745)
T ss_pred -ccceEEEEEEecCCCCeEEEecCCc---eEEEeecCc----eEEEEecCccceEEEEEeeCCC--EEEeccCceEEE
Confidence 2467899999999999999999999 999999883 6788887665655554444454 678888887653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=159.40 Aligned_cols=277 Identities=13% Similarity=0.166 Sum_probs=195.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~dG~I~ 100 (1196)
.++++-|-+-.-.|.++.-|+.+..+++..-.+..-..+. |..+ .|....|.|+|. .+++++...-..
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-----l~~f------Pi~~a~f~p~G~~~i~~s~rrky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-----LEKF------PIQKAEFAPNGHSVIFTSGRRKYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-----eccC------ccceeeecCCCceEEEecccceEEE
Confidence 7888899998899999988886555555212222211121 3433 578899999999 788888777788
Q ss_pred EEECCCCeEE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCC
Q 000992 101 LHSVDGNATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 101 lw~~~~~~~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.||+.+.++. ..|.-+..+.....||||++||+++..|-|.+.. +..+.+....+. +.
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie-----------------G~ 346 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE-----------------GV 346 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec-----------------cE
Confidence 8999987654 2343345788999999999999999999998874 444444444432 45
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc--eeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM--GAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~--v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
+..+.|+.||+.|. +++ +++.|.|||...-.++..+.. +|. -.+++-|++|.++|+||. .+.|-
T Consensus 347 v~~~~fsSdsk~l~-~~~------~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~------~GiVN 412 (514)
T KOG2055|consen 347 VSDFTFSSDSKELL-ASG------GTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSD------SGIVN 412 (514)
T ss_pred EeeEEEecCCcEEE-EEc------CCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccC------cceEE
Confidence 68999999999887 443 468999999977777777642 222 268888999999999997 45788
Q ss_pred EEeCCCeeEEEEEeccC------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC-----Cc
Q 000992 254 FYERNGLERSSFDINEQ------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR-----DG 322 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~-----~~ 322 (1196)
+|+.|.-..+. -|.| ....|.+|+||||+++||+++.-. .+.++|-++....-|- .|+.. .+
T Consensus 413 IYd~~s~~~s~--~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-knalrLVHvPS~TVFs----NfP~~n~~vg~v 485 (514)
T KOG2055|consen 413 IYDGNSCFAST--NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNALRLVHVPSCTVFS----NFPTSNTKVGHV 485 (514)
T ss_pred EeccchhhccC--CCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccceEEEeccceeeec----cCCCCCCcccce
Confidence 99866432221 1111 124699999999999999998764 3468888776432110 12221 12
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEE
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
+++.|||.++. +++++..|++..+.
T Consensus 486 tc~aFSP~sG~-lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 486 TCMAFSPNSGY-LAVGNEAGRVHLFK 510 (514)
T ss_pred EEEEecCCCce-EEeecCCCceeeEe
Confidence 88999998887 88998888876443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=163.75 Aligned_cols=263 Identities=13% Similarity=0.168 Sum_probs=185.8
Q ss_pred CCCCEEEEEEccCCC-EEEEEECCCcEEEEECCC--------Ce----EEEeeeecCcEEEEEECCCCC-EEEEEeCCce
Q 000992 74 PGDSITAFDYLMEKE-ALIVGTSSGLLLLHSVDG--------NA----TEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQ 139 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~-~La~as~dG~I~lw~~~~--------~~----~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~t 139 (1196)
..+.|+.+.|.|... .+|+.+.+|+|.|||... +. +.+.|| ++.=..++||+..+ .|++++.|++
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH-EKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee-cccccccccccccceeEeeccCCCc
Confidence 357788888988764 566778999999999753 11 235665 44447799999865 6888899999
Q ss_pred EEEEeccCceeeeeecccccCccccc-cCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECC--CCcEE
Q 000992 140 ILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERD--SGTLQ 215 (1196)
Q Consensus 140 V~l~~~~~d~~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~--~G~l~ 215 (1196)
|.+|+..-.... .+.+. -+-|++|.+.|..++|.+--+ .|++|+ .|+.+.|||.+ +-+..
T Consensus 202 i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~-------dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 202 ICLWDINAESKE---------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG-------DDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred EEEEeccccccC---------CccccceEEeecCCcceehhhccccchhhheeec-------CCCeEEEEEcCCCCCCCc
Confidence 998864322111 11111 234778999999999999665 555332 47999999987 44555
Q ss_pred EEeccCCCceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEcc
Q 000992 216 ASSELKAFMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRF 293 (1196)
Q Consensus 216 ~~~e~~~~~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d 293 (1196)
.+-++|++.+++++|+|- +.+||++|.|+ +|.+|++..+.+.-.++.. +...|..|.|||.- ++||+.+.|
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~------tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADK------TVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCC------cEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccC
Confidence 666789999999999995 56789999875 6999997555543233333 45689999999974 689999999
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
+ .+.+||++.-. + .. + |+..
T Consensus 339 ~---rl~vWDls~ig-----~------eq-~----~eda----------------------------------------- 358 (422)
T KOG0264|consen 339 R---RLNVWDLSRIG-----E------EQ-S----PEDA----------------------------------------- 358 (422)
T ss_pred C---cEEEEeccccc-----c------cc-C----hhhh-----------------------------------------
Confidence 9 99999987411 0 00 0 1100
Q ss_pred ccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 374 l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
..-||-+-+..-+|.+.|.+.+|+|... -.+||++.|+.++||+...
T Consensus 359 ---~dgppEllF~HgGH~~kV~DfsWnp~eP-W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 ---EDGPPELLFIHGGHTAKVSDFSWNPNEP-WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ---ccCCcceeEEecCcccccccccCCCCCC-eEEEEecCCceEEEeeccc
Confidence 0113333333335778899999999874 6799999999999999873
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-13 Score=146.63 Aligned_cols=286 Identities=12% Similarity=0.044 Sum_probs=188.4
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC 195 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d 195 (1196)
.+.|+++.||+||+.|++++.|.++++.+ ...+..++... .+.-++-.+.|--....+. .|+-
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd----~~~g~~~~ti~-----------skkyG~~~~~Fth~~~~~i-~sSt- 76 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYD----SLSGKQVKTIN-----------SKKYGVDLACFTHHSNTVI-HSST- 76 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEE----cCCCceeeEee-----------cccccccEEEEecCCceEE-EccC-
Confidence 46799999999999999999999998865 23333322221 1112455677765555555 3432
Q ss_pred cccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCc
Q 000992 196 NSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDST 274 (1196)
Q Consensus 196 ~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~ 274 (1196)
..|.+||.-+..+.+.++.+.+|...|.+|+-+|-+....|++.|+ +|++|+..-.. .|-..+..
T Consensus 77 ---k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~------tvrLWDlR~~~cqg~l~~~~----- 142 (311)
T KOG1446|consen 77 ---KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDK------TVRLWDLRVKKCQGLLNLSG----- 142 (311)
T ss_pred ---CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCC------eEEeeEecCCCCceEEecCC-----
Confidence 2578999999999999999999999999999999999999999975 69999954221 12111211
Q ss_pred EEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe--cCCc-EEEEEccCCCceEEEEecCCcEEEEEEEE
Q 000992 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL--RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIW 351 (1196)
Q Consensus 275 V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~--~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~ 351 (1196)
-.-.||.|.|-++|++.... .|+|+|+..+.---.+.+... .... ..+.|||+|.. +.+.+..+.+...
T Consensus 143 ~pi~AfDp~GLifA~~~~~~---~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~l---- 214 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSE---LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLL---- 214 (311)
T ss_pred CcceeECCCCcEEEEecCCC---eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEE----
Confidence 22589999999999999886 799999987632111222222 1122 77999999975 5555554433221
Q ss_pred eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc
Q 000992 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL 431 (1196)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~ 431 (1196)
-+.+|. + +..|.. +.-...-+ .+.+|+||+ +.+.+++.||+|.+|+..++.....+
T Consensus 215 ----------DAf~G~-~-~~tfs~---------~~~~~~~~-~~a~ftPds--~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 215 ----------DAFDGT-V-KSTFSG---------YPNAGNLP-LSATFTPDS--KFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ----------EccCCc-E-eeeEee---------ccCCCCcc-eeEEECCCC--cEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 122443 1 112211 00001111 577899999 89999999999999999876555444
Q ss_pred cCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 432 EGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.|+ ....+..+.|.|--..+++++ +.+.+|...
T Consensus 271 ~~~-----------~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~ 303 (311)
T KOG1446|consen 271 RGP-----------NGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD 303 (311)
T ss_pred cCC-----------CCCCccccccCCceeeeeecC----ceEEEEecc
Confidence 442 123455566888766666543 577788663
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-14 Score=156.73 Aligned_cols=255 Identities=11% Similarity=0.108 Sum_probs=183.7
Q ss_pred ccceecccccccccccCccc--ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEE
Q 000992 2 NNLKLCAEVPLNLELQSKDE--ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT 79 (1196)
Q Consensus 2 rNL~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 79 (1196)
+|+++++...-++-...+|. .|+...+.++.+.+..+|.|..|+.|... .... ..+ ++-| ...|+
T Consensus 241 ~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~--~~s~-~~~------~~~h----~~~V~ 307 (506)
T KOG0289|consen 241 KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVP--LSSE-PTS------SRPH----EEPVT 307 (506)
T ss_pred CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccc--cccC-ccc------cccc----cccce
Confidence 35556554443432233343 68888999999999999999999999984 2211 111 2222 46899
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeec---CcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeec
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVE---GGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPL 155 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~---~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l 155 (1196)
.++-+|.|++|.+++.||++...|..++..-++-.++ -.+.+++|.|||-++++++.|+.|++|+. ..+.
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~------ 381 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN------ 381 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc------
Confidence 9999999999999999999999999988765544443 45999999999999999999999998752 2111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSG 234 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG 234 (1196)
...|.+|...|..|+|+-+|.|+| ++. +|+.|++||.+.-+...+..-.+ ..+.+++|-++|
T Consensus 382 ----------~a~Fpght~~vk~i~FsENGY~La-t~a------dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 382 ----------VAKFPGHTGPVKAISFSENGYWLA-TAA------DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred ----------cccCCCCCCceeEEEeccCceEEE-EEe------cCCeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence 135668889999999999999999 675 45779999986666555553222 257899999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
.+++.++.+ ..|-.+.+....-.+. .+.. +.+....+.|..+-++||+++-|. ..+++
T Consensus 445 t~L~~~g~~------l~Vy~~~k~~k~W~~~~~~~~-~sg~st~v~Fg~~aq~l~s~smd~---~l~~~ 503 (506)
T KOG0289|consen 445 TYLGIAGSD------LQVYICKKKTKSWTEIKELAD-HSGLSTGVRFGEHAQYLASTSMDA---ILRLY 503 (506)
T ss_pred CeEEeecce------eEEEEEecccccceeeehhhh-cccccceeeecccceEEeeccchh---heEEe
Confidence 999988653 4455555321111110 1111 234677899999999999999998 66654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-14 Score=150.06 Aligned_cols=259 Identities=13% Similarity=0.136 Sum_probs=182.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+.+||.-|+.+.+||.|..+..||. ....+.|.+. +.-+.| .+.|..|.|.+ =|+.+|+++.|+++
T Consensus 15 lihdVs~D~~GRRmAtCSsDq~vkI~d~--~~~s~~W~~T---s~Wrah----~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 15 LIHDVSFDFYGRRMATCSSDQTVKIWDS--TSDSGTWSCT---SSWRAH----DGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred eeeeeeecccCceeeeccCCCcEEEEec--cCCCCceEEe---eeEEec----CCcEEEEEecCccccceEEEEecCCce
Confidence 7899999999999999999999999997 4444445543 123333 47899999955 38999999999999
Q ss_pred EEEECCC-------CeE---EEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEe-------ccCceeeeeecccccC
Q 000992 100 LLHSVDG-------NAT---EVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMT-------HDWDLLYENPLEELAE 160 (1196)
Q Consensus 100 ~lw~~~~-------~~~---e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~-------~~~d~~~~~~l~~~~~ 160 (1196)
.||..+. .+. .++-.-.+.|+.+.|+|- |=.||+++.||+|+++. +.|....|+..-..+-
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9998732 111 122222567999999997 66899999999999863 3466666555333221
Q ss_pred ccccccCccccCCCCeEEEEEccC---CceEEEeeccccccCCCCEEEEEECCC-C-cEEE--EeccCCCceeEEEEcCC
Q 000992 161 GFDVHEPELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWERDS-G-TLQA--SSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWspD---G~~lAsvss~d~~~~~d~~irVWd~~~-G-~l~~--~~e~~~~~v~slawsPd 233 (1196)
+ .+.....+++|+|- -++|| +++.+ .+..-+.++||...+ | +.+. ++..|..+|.+|+|.|+
T Consensus 166 ~---------~~~~~~~CvsWn~sr~~~p~iA-vgs~e-~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 166 G---------KNKQPCFCVSWNPSRMHEPLIA-VGSDE-DAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred c---------cccCcceEEeeccccccCceEE-EEccc-CCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 1 11234579999963 34899 88743 123446789998753 3 3333 45578899999999997
Q ss_pred -C---CeEEEEecCCCCCCCCeEEEEeCCCee-------------EEEEEec-----cCCCCcEEEEEEccCCCeeEEEE
Q 000992 234 -G---ANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDIN-----EQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 234 -G---~~IAs~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~-----~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
| .+||+++.|+ |++|...+.+ .+.+.+. ..|.+.|+.+.||--|.+|++.+
T Consensus 235 ~Gr~y~~lAvA~kDg-------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTG 307 (361)
T ss_pred cCCceeeEEEeecCc-------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecC
Confidence 3 4799998752 8888754322 1111111 23456899999999999999999
Q ss_pred ccCCcceEEEEEec-CCEEE
Q 000992 292 RFEEYDSVKICFFS-NNHWY 310 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~-n~~wy 310 (1196)
.|| .|+||..+ |..|-
T Consensus 308 dDG---~VRLWkany~n~~k 324 (361)
T KOG2445|consen 308 DDG---CVRLWKANYNNLWK 324 (361)
T ss_pred CCc---eeeehhhhhhhhhe
Confidence 999 99999876 44453
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=168.93 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=184.9
Q ss_pred cCCCEEEEEECCCcEEEEECCC--Ce-----EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 85 MEKEALIVGTSSGLLLLHSVDG--NA-----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~--~~-----~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
|.+++|.+|+.||.|++|+... ++ +....+|.++|+.++.--+|+.|+++|.|-||++|+..-+. ..+...
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--TFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--chhHhh
Confidence 4567799999999999999854 22 22456789999999999999999999999999998743221 123222
Q ss_pred ccCccccccCccccCCCCeEEEEE-ccCCceEEEeeccccccCCCCEEEEEECCCC--cEEEEec---------cCCCce
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSE---------LKAFMG 225 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isW-spDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e---------~~~~~v 225 (1196)
.. .|++.|.+++. -++...+| +++. |+.|.|||.++| ++..+++ ++...+
T Consensus 113 ir-----------~H~DYVkcla~~ak~~~lva-SgGL------D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 113 IR-----------THKDYVKCLAYIAKNNELVA-SGGL------DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred hh-----------cccchheeeeecccCceeEE-ecCC------CccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 22 57788999999 88888888 6764 699999999877 3333322 344567
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.++|-+|.|..|++|+-. ..++||+. .+.+. ..|++ |+..|..|--++||+.+.++++|+ +|+||++
T Consensus 175 YSLA~N~t~t~ivsGgte------k~lr~wDprt~~ki--mkLrG-HTdNVr~ll~~dDGt~~ls~sSDg---tIrlWdL 242 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTE------KDLRLWDPRTCKKI--MKLRG-HTDNVRVLLVNDDGTRLLSASSDG---TIRLWDL 242 (735)
T ss_pred eeeecCCcceEEEecCcc------cceEEeccccccce--eeeec-cccceEEEEEcCCCCeEeecCCCc---eEEeeec
Confidence 999999999999998874 57999994 33332 34554 467899999999999999999999 9999999
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
+..+. .+++..|.++.+.+.=+|.= ..++.+..+| .|..|+++.- --+
T Consensus 243 gqQrC--l~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~-------------------------~i~~Tdl~n~----~~~ 290 (735)
T KOG0308|consen 243 GQQRC--LATYIVHKEGVWALQSSPSF-THVYSGGRDG-------------------------NIYRTDLRNP----AKS 290 (735)
T ss_pred cccce--eeeEEeccCceEEEeeCCCc-ceEEecCCCC-------------------------cEEecccCCc----hhh
Confidence 98764 23455544332222222211 1122222222 3344454421 111
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
..-.+-+.+|..+..+-+. +.+-+++.|+.|+-|...
T Consensus 291 tlick~daPv~~l~~~~~~--~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLHEHD--NSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred eEeecCCCchhhhhhcccc--CCceeeeccccceecCCc
Confidence 1112334566666655443 445677788889888765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=152.37 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=202.6
Q ss_pred EeeeecCcEEEEEEC---CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 111 VVGRVEGGVRFISPS---PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 111 ~vg~~~~~I~~~awS---PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
+-| |..+|..++|| |||=.|.+++.|+.=.+ |.++. +.+| ..|.+|.+.|++.+-.-+...
T Consensus 10 c~g-htrpvvdl~~s~itp~g~flisa~kd~~pml--r~g~t-----------gdwi--gtfeghkgavw~~~l~~na~~ 73 (334)
T KOG0278|consen 10 CHG-HTRPVVDLAFSPITPDGYFLISASKDGKPML--RNGDT-----------GDWI--GTFEGHKGAVWSATLNKNATR 73 (334)
T ss_pred EcC-CCcceeEEeccCCCCCceEEEEeccCCCchh--ccCCC-----------CCcE--EeeeccCcceeeeecCchhhh
Confidence 455 58899999998 59999999999986533 43331 1222 245578888888888877765
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1196)
-| +++ .|-+-+|||.-+|..+.+++ |...|.+++|+.|.+.|.+|+..+ -+++|+.|-..-.--.+
T Consensus 74 aa-saa------adftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ek------llrvfdln~p~App~E~ 139 (334)
T KOG0278|consen 74 AA-SAA------ADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEK------LLRVFDLNRPKAPPKEI 139 (334)
T ss_pred hh-hhc------ccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHH------HhhhhhccCCCCCchhh
Confidence 55 454 46789999998999888887 778899999999999999998754 57888876432110011
Q ss_pred ccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEE
Q 000992 268 NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
..+.+.|..+-|--.-+.+.+.+.|+ +|||||..+.. ..|.|.+.. .+.++--|++|..
T Consensus 140 -~ghtg~Ir~v~wc~eD~~iLSSadd~---tVRLWD~rTgt--~v~sL~~~s-~VtSlEvs~dG~i-------------- 198 (334)
T KOG0278|consen 140 -SGHTGGIRTVLWCHEDKCILSSADDK---TVRLWDHRTGT--EVQSLEFNS-PVTSLEVSQDGRI-------------- 198 (334)
T ss_pred -cCCCCcceeEEEeccCceEEeeccCC---ceEEEEeccCc--EEEEEecCC-CCcceeeccCCCE--------------
Confidence 12457899999987666666668888 99999998764 356666632 1244444555432
Q ss_pred EEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 348 NFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 348 ~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
+...+|..|+.|+-..-. + .++...|.+|.+.+.+|+. ..+++++.|..++-||..+...
T Consensus 199 -------------lTia~gssV~Fwdaksf~---~--lKs~k~P~nV~SASL~P~k--~~fVaGged~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 199 -------------LTIAYGSSVKFWDAKSFG---L--LKSYKMPCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGEE 258 (334)
T ss_pred -------------EEEecCceeEEecccccc---c--eeeccCccccccccccCCC--ceEEecCcceEEEEEeccCCce
Confidence 222345555555432100 0 1344578899999999998 8999999999999999988655
Q ss_pred cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+.. .++|.+.|..+.|+|||.+.|+++.+ .++.+|..+
T Consensus 259 i~~~-----------nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt~ 297 (334)
T KOG0278|consen 259 IGSY-----------NKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQTT 297 (334)
T ss_pred eeec-----------ccCCCCceEEEEECCCCceeeccCCC--ceEEEEEec
Confidence 5221 12456789999999999999998876 688999875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-11 Score=140.06 Aligned_cols=367 Identities=16% Similarity=0.165 Sum_probs=231.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ccCCC-EEEEEEC-CCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LMEKE-ALIVGTS-SGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-spd~~-~La~as~-dG~ 98 (1196)
.+....++..+..+.+.+.++.+..|+. ..... .+.. +.... ...+..+.+ ++++. .++..+. |+.
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~--~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~ 135 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDL--DNGEK--LIKS----LEGLH---DSSVSKLALSSPDGNSILLASSSLDGT 135 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEc--CCCce--eEEE----EeccC---CCceeeEEEECCCcceEEeccCCCCcc
Confidence 6778889999999999998888999998 33321 1111 11110 125677777 88888 5555444 999
Q ss_pred EEEEECCC--CeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccC-ceeeeeecccccCccccccCccccCCC
Q 000992 99 LLLHSVDG--NATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 99 I~lw~~~~--~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+.+|+..+ ........|...|.+++|+|+++.+++++. |+++.+|+... ..+.. +.+|..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 199 (466)
T COG2319 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----------------LAGHTD 199 (466)
T ss_pred EEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe----------------eccCCC
Confidence 99999986 444455557889999999999999999986 99999986432 11111 113556
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.+..++|+|+|.+++ ++. ..+++|++||...|.... ...+|.... ...|+|+|.++++++.+ ..++
T Consensus 200 ~v~~~~~~~~~~~~~-~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d------~~~~ 266 (466)
T COG2319 200 PVSSLAFSPDGGLLI-ASG-----SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD------GTIR 266 (466)
T ss_pred ceEEEEEcCCcceEE-EEe-----cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC------CcEE
Confidence 789999999998444 231 146899999987788887 566666654 33899999888888775 4699
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
+|+..........+ ..+...|..+.|+|++..+++++.|+ .+++|+..+...........+......+.| +....
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 341 (466)
T COG2319 267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGS 341 (466)
T ss_pred EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCC
Confidence 99865433311222 22356899999999999999988886 799998776432111110111111244555 32212
Q ss_pred eEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000992 334 QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1196)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~ 413 (1196)
.+..... .| ..+.+|++.... ..........+..+.|++ . .........
T Consensus 342 ~~~~~~~-----------------------~d-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~ 390 (466)
T COG2319 342 LLVSGGS-----------------------DD-GTIRLWDLRTGK-----PLKTLEGHSNVLSVSFSP-D-GRVVSSGST 390 (466)
T ss_pred EEEEeec-----------------------CC-CcEEeeecCCCc-----eeEEecCCceEEEEEECC-C-CCEEEEecC
Confidence 1222210 11 223333332211 111122223378899999 6 355566889
Q ss_pred CCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 414 DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 414 dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
++.+.+|+...........+ ....+....+++++..++.+..+ ..+.+|..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 441 (466)
T COG2319 391 DGTVRLWDLSTGSLLRNLDG------------HTSRVTSLDFSPDGKSLASGSSD--NTIRLWDL 441 (466)
T ss_pred CCceEEEecccCeeeeeccC------------CCCcEEEEEECCCCcEEEEecCC--CcEEEEec
Confidence 99999999976433211111 00467888889999887764332 45555554
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-12 Score=135.33 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=171.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc-ceeeccc-cccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA-SIKTAIS-AEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+-+.+|-|.+....++|.++.+.........+... -+....| +-+..-.--..+.|.+.+|||+|+.||+|+.|.+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~i 113 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTI 113 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceE
Confidence 566778888888666666665433322210000000 0000011 00100000004789999999999999999999999
Q ss_pred EEE--ECCCC-----eEEEeeeecCcEEEEEEC----CCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccC
Q 000992 100 LLH--SVDGN-----ATEVVGRVEGGVRFISPS----PDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 100 ~lw--~~~~~-----~~e~vg~~~~~I~~~awS----PDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
++. |.+|. .+| +.-|++.|..++|= .-|.+||+++ +|-+|.+- |.-.+..++...
T Consensus 114 k~l~fn~dt~~~~g~dle-~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~t----dc~~g~~~~a~s-------- 180 (350)
T KOG0641|consen 114 KVLPFNADTCNATGHDLE-FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYIT----DCGRGQGFHALS-------- 180 (350)
T ss_pred EEEecccccccccCccee-eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEe----ecCCCCcceeec--------
Confidence 984 44442 233 34479999999993 3466788876 34444332 222334444333
Q ss_pred ccccCCCCeEE-EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CC-----CceeEEEEcCCCCeEEE
Q 000992 168 ELSSSFSFKSP-ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KA-----FMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 168 qf~~~~~~v~~-isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~-----~~v~slawsPdG~~IAs 239 (1196)
+|.+.+.. .+| +|.+|| +++ .|.+||.||..-..+..+... |+ ..|.+++--|.|+++|+
T Consensus 181 ---ghtghilalysw--n~~m~~-sgs------qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 181 ---GHTGHILALYSW--NGAMFA-SGS------QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred ---CCcccEEEEEEe--cCcEEE-ccC------CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 45555554 366 478899 676 579999999866666666532 22 34689999999999999
Q ss_pred EecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE--
Q 000992 240 VYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-- 316 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~-- 316 (1196)
|..|. .-.+|+..|.+ .+.| -|+...|.++.|||..-+|.+++.|. .|++=|+... |.+++.
T Consensus 249 g~~ds------sc~lydirg~r~iq~f---~phsadir~vrfsp~a~yllt~syd~---~ikltdlqgd---la~el~~~ 313 (350)
T KOG0641|consen 249 GHADS------SCMLYDIRGGRMIQRF---HPHSADIRCVRFSPGAHYLLTCSYDM---KIKLTDLQGD---LAHELPIM 313 (350)
T ss_pred ccCCC------ceEEEEeeCCceeeee---CCCccceeEEEeCCCceEEEEecccc---eEEEeecccc---hhhcCceE
Confidence 99874 46788865544 3333 25677899999999999999999999 8999998752 233332
Q ss_pred --EecCCc-EEEEEccCC
Q 000992 317 --YLRRDG-IRFMWHPTK 331 (1196)
Q Consensus 317 --~~~~~~-~~v~Wsp~~ 331 (1196)
....+. ..+.|||+.
T Consensus 314 vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred EEEeccCceEEEEecCcc
Confidence 222333 677898875
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=164.61 Aligned_cols=223 Identities=12% Similarity=0.034 Sum_probs=143.2
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~--tV~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+..+. +..|.+|+..+++.+.+....+.+.+.+|||||+.||.+. .++ .|.+|+.....
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 46889999999999997653 3468999999887765555556677899999999999873 344 46555432111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+...+...+|+|||+.|++ ++.. .+...|.++|..+|+...... ..+.....+
T Consensus 279 ~~--~lt--------------~~~~~~~~~~wSPDG~~I~f-~s~~---~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~ 337 (429)
T PRK03629 279 IR--QVT--------------DGRSNNTEPTWFPDSQNLAY-TSDQ---AGRPQVYKVNINGGAPQRITW-EGSQNQDAD 337 (429)
T ss_pred EE--Ecc--------------CCCCCcCceEECCCCCEEEE-EeCC---CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 11 111 11124568999999999984 4421 112355556775665544322 233446789
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|||||+.||.++.+.+ ...|.+|+..+..... +... ....+.+|||||+.|+..+.++....+.+|++....
T Consensus 338 ~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~--Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~- 409 (429)
T PRK03629 338 VSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQV--LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF- 409 (429)
T ss_pred ECCCCCEEEEEEccCC---CceEEEEECCCCCeEE--eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-
Confidence 9999999998876432 4568888865433322 2211 224578999999999999988754567778775432
Q ss_pred EEEEEEEEecCCcEEEEEcc
Q 000992 310 YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+.+..+........|+|
T Consensus 410 --~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 --KARLPATDGQVKFPAWSP 427 (429)
T ss_pred --eEECccCCCCcCCcccCC
Confidence 233433222335677887
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=164.64 Aligned_cols=203 Identities=16% Similarity=0.101 Sum_probs=136.6
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCce--EEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~t--V~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+.++. +++|.+||+.+++...+..+.+.+.+.+|||||+.||.. +.++. |.+|+.....
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 47899999999999998864 468999999998777666667778899999999998765 44555 4444422111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
. ..+. .+.......+|+|||+++++ .+.. .+...|.+||..+|+...... ..+.....+
T Consensus 282 ~--~~Lt--------------~~~~~~~~~~~spDG~~i~f-~s~~---~g~~~Iy~~d~~g~~~~~lt~-~~~~~~~~~ 340 (435)
T PRK05137 282 T--TRLT--------------DSPAIDTSPSYSPDGSQIVF-ESDR---SGSPQLYVMNADGSNPRRISF-GGGRYSTPV 340 (435)
T ss_pred e--EEcc--------------CCCCccCceeEcCCCCEEEE-EECC---CCCCeEEEEECCCCCeEEeec-CCCcccCeE
Confidence 1 1111 11123357899999999994 4321 134578999986666655443 244556789
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc---ceEEEEEecC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY---DSVKICFFSN 306 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~---~~V~lW~~~n 306 (1196)
|||||+.||..+.+.+ ...|.+|+.+|..... +.. ...+.+++|||||+.|+..+.+... ..+.+.++.+
T Consensus 341 ~SpdG~~ia~~~~~~~---~~~i~~~d~~~~~~~~--lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG---QFSIGVMKPDGSGERI--LTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred ECCCCCEEEEEEcCCC---ceEEEEEECCCCceEe--ccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 9999999998876432 4578888876543322 221 2246789999999999987765422 2355555544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-12 Score=152.88 Aligned_cols=388 Identities=12% Similarity=0.091 Sum_probs=239.6
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccc------ccccc-----c---cCCC--CCCEEEEEEccCCCE
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAIS------AEIEH-----I---DLEP--GDSITAFDYLMEKEA 89 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~-----~---~~~~--~~~v~~v~~spd~~~ 89 (1196)
-++-+-++.|++++.++.|..++.. +-+ -+.||| ++.+. + ...| ...-+++.|.|..+.
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~--tL~---y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~k 338 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPE--TLD---YAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDK 338 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcc--hhh---hccccccccccccchhhcccccccccccCcccCCceeEEEecCCCce
Confidence 3455567889999999977777662 211 122333 11100 0 0001 123578899999999
Q ss_pred EEEEECCCcEEEEECCC----CeEEEeeeecCcEEEEEECC------CC-----CEEEEEeCCceEEEEeccC----cee
Q 000992 90 LIVGTSSGLLLLHSVDG----NATEVVGRVEGGVRFISPSP------DG-----DLLGVTTGFGQILVMTHDW----DLL 150 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~----~~~e~vg~~~~~I~~~awSP------Dg-----~~LA~~s~d~tV~l~~~~~----d~~ 150 (1196)
|.....|..+.+||++. +++...=.|...||.+.-=| .. .-..+++.|+||++|+..+ +..
T Consensus 339 lscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vy 418 (1080)
T KOG1408|consen 339 LSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVY 418 (1080)
T ss_pred EEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccccccee
Confidence 99999999999999975 44443344677787766544 11 2367889999999998776 221
Q ss_pred eeeecccccCccccc---cCccc----------------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 151 YENPLEELAEGFDVH---EPELS----------------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs---~tqf~----------------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
..-.+..+ -.+.+. ++||. ....++.+|+-||||++|| ++. .-+++|||+..+
T Consensus 419 rRNils~~-l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA-sGD------r~GnlrVy~Lq~ 490 (1080)
T KOG1408|consen 419 RRNILSAN-LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA-SGD------RGGNLRVYDLQE 490 (1080)
T ss_pred ecccchhh-hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec-ccC------ccCceEEEEehh
Confidence 11111111 011111 23332 2335789999999999999 453 347999999988
Q ss_pred CcEEEEeccCCCceeEEEEcCC---CCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEeccCCCCcEEEEEEccCC--
Q 000992 212 GTLQASSELKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS-- 284 (1196)
Q Consensus 212 G~l~~~~e~~~~~v~slawsPd---G~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg-- 284 (1196)
-+.....|.|+..|-++.||-- .++|||+++|. -|.+|+. |=...+ +|.+ |...|.+|.|-..|
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR------lIHV~Dv~rny~l~q--tld~-HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR------LIHVYDVKRNYDLVQ--TLDG-HSSSITSVKFACNGLN 561 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCc------eEEEEecccccchhh--hhcc-cccceeEEEEeecCCc
Confidence 7777788999999999999852 46899999974 5888884 322111 2222 35689999999988
Q ss_pred CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEE
Q 000992 285 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVI 364 (1196)
Q Consensus 285 ~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~vi 364 (1196)
..+.+++.|+ .| .+++.. |. .++.. .|.+..++ +.-..|+. .++|...-++.+.
T Consensus 562 ~~MiscGADk---si-mFr~~q-----k~------~~g~~---f~r~t~t~------~ktTlYDm--~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 562 RKMISCGADK---SI-MFRVNQ-----KA------SSGRL---FPRHTQTL------SKTTLYDM--AVDPTSKLVVTVC 615 (1080)
T ss_pred eEEEeccCch---hh-heehhc-----cc------cCcee---cccccccc------ccceEEEe--eeCCCcceEEEEe
Confidence 6777777887 33 333221 00 00000 01111100 01111111 1223333444555
Q ss_pred cCCEEEEeeccccCCCCCceee-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecc
Q 000992 365 DGSKILVTPLSLSLMPPPMYLF-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS 443 (1196)
Q Consensus 365 Dg~~l~lt~l~~~~vpppm~~~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~ 443 (1196)
.+.+|++..+.-+-.- -.++ .-.+.+....|..-|.| .+||+..+|.++.++|+.+.+|+....||
T Consensus 616 QDrnirif~i~sgKq~--k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl~~~Df~sgEcvA~m~GH--------- 682 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQV--KSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTLCFVDFVSGECVAQMTGH--------- 682 (1080)
T ss_pred cccceEEEecccccee--eeecccccCCCceEEEEECCCc--cEEEEeecCCceEEEEeccchhhhhhcCc---------
Confidence 5555555544321100 0000 11356677889999999 89999999999999999988888666665
Q ss_pred cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 444 ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 444 ~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
...|..+-|+||-+.|.+.+.+ .=+.+|.+.
T Consensus 683 ---sE~VTG~kF~nDCkHlISvsgD--gCIFvW~lp 713 (1080)
T KOG1408|consen 683 ---SEAVTGVKFLNDCKHLISVSGD--GCIFVWKLP 713 (1080)
T ss_pred ---chheeeeeecccchhheeecCC--ceEEEEECc
Confidence 4578999999999888777654 456667664
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-13 Score=152.58 Aligned_cols=278 Identities=13% Similarity=0.069 Sum_probs=201.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc--cc--cccCC-----CCCCEEEEEEccCCCEEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE--IE--HIDLE-----PGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~--l~--~~~~~-----~~~~v~~v~~spd~~~La~ 92 (1196)
.+++++..++...+|+++.++.|.+|++ .++...-.+ ++.+ ++ ..++. +...+.+++.||||++||+
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v--~tgk~~~~i--~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDV--LTGKKDRYI--IERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeeh--hcCcccccc--cccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 6889999999999999999999999999 555432111 1111 11 11111 1367999999999999999
Q ss_pred EECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 93 GTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|..|..|.||+.++.+. .....|.+.|.+++|=-.-..|-+++.|.+|++|+.+-.... ..+.+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v---------------etlyG 284 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV---------------ETLYG 284 (479)
T ss_pred cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH---------------HHHhC
Confidence 99999999999998653 455667999999999888888999999999999975311111 12337
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
|.+.|..|.=..-++.+- |++ .||++|+|.. .-+.+-++.++.+.+.+++|=-+- .+++||++ ..
T Consensus 285 Hqd~v~~IdaL~reR~vt-VGg------rDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSdn------G~ 349 (479)
T KOG0299|consen 285 HQDGVLGIDALSRERCVT-VGG------RDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSDN------GS 349 (479)
T ss_pred CccceeeechhcccceEE-ecc------ccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccCC------ce
Confidence 778899998877776544 765 5799999999 777777788888889999997664 56778875 46
Q ss_pred EEEEeCCCeeEEEEEeccC---------C--CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE--EEEEEEEEEe
Q 000992 252 IVFYERNGLERSSFDINEQ---------I--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH--WYLKYEIRYL 318 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~---------~--~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~--wylkq~l~~~ 318 (1196)
|.+|..--.+ --|+.+.. . ..+|.+|+-.|.+.++|+++.++ .|+||-++..- -.+..++.+.
T Consensus 350 IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G---~vrLW~i~~g~r~i~~l~~ls~~ 425 (479)
T KOG0299|consen 350 IALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG---CVRLWKIEDGLRAINLLYSLSLV 425 (479)
T ss_pred EEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC---ceEEEEecCCccccceeeecccc
Confidence 9999843211 12322211 1 12899999999999999999999 99999998542 1233344331
Q ss_pred cCCcEEEEEccCCCceEEEEe
Q 000992 319 RRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.-+..+.|++++.. +.++.
T Consensus 426 -GfVNsl~f~~sgk~-ivagi 444 (479)
T KOG0299|consen 426 -GFVNSLAFSNSGKR-IVAGI 444 (479)
T ss_pred -cEEEEEEEccCCCE-EEEec
Confidence 12377889998874 44443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-14 Score=158.32 Aligned_cols=241 Identities=13% Similarity=0.139 Sum_probs=181.8
Q ss_pred ccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCC-CCCCEEEEEEccCCCEEEEEECCCc
Q 000992 20 DEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLE-PGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 20 ~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
|+.+++.++...+..||.+..-. |..||++ ......-++.|| .+ +...|.+...+|||+.|.+|++-.+
T Consensus 419 GEvVcAvtIS~~trhVyTgGkgc-VKVWdis--~pg~k~PvsqLd-------cl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGGKGC-VKVWDIS--QPGNKSPVSQLD-------CLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred CcEEEEEEecCCcceeEecCCCe-EEEeecc--CCCCCCcccccc-------ccCcccceeeeEecCCCceEEeccccce
Confidence 44678888999999999988776 9999994 332222233322 22 3578999999999999999999999
Q ss_pred EEEEECCCC--eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGN--ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~--~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+.|||+..- .+. .+..-.-.-.+++.|||.+++.++-.||+|.+|+.. .+... .||++|.++
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh----nq~~V-----------rqfqGhtDG 553 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----NQTLV-----------RQFQGHTDG 553 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc----cceee-----------ecccCCCCC
Confidence 999999753 232 222212346789999999999999999999887532 22222 378899999
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+.+|..|+||.-|= .++. |.+||-||..+|..+.... ....|.++..+|.|.++|.|-.. ..|.+.
T Consensus 554 ascIdis~dGtklW-TGGl------DntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMen------s~vevl 619 (705)
T KOG0639|consen 554 ASCIDISKDGTKLW-TGGL------DNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMEN------SNVEVL 619 (705)
T ss_pred ceeEEecCCCceee-cCCC------ccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeeccc------CcEEEE
Confidence 99999999999998 5764 6899999998886554322 23457999999999999999764 346666
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..+|....+ |.. ++.-|.+|.|++-|+..++.+.|. -+-.|.+.
T Consensus 620 h~skp~kyq--lhl-heScVLSlKFa~cGkwfvStGkDn---lLnawrtP 663 (705)
T KOG0639|consen 620 HTSKPEKYQ--LHL-HESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTP 663 (705)
T ss_pred ecCCcccee--ecc-cccEEEEEEecccCceeeecCchh---hhhhccCc
Confidence 666654443 332 356799999999999999999998 77778765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=148.54 Aligned_cols=309 Identities=14% Similarity=0.229 Sum_probs=191.1
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I 99 (1196)
.++.+-|-.|+.-+.|+ ..+..+..|++ .+.+=..+| ++| .+.+.++.|||||+.|. ...-+-.|
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl--~Qpew~ckI---deg--------~agls~~~WSPdgrhiL~tseF~lri 116 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSL--VQPEWYCKI---DEG--------QAGLSSISWSPDGRHILLTSEFDLRI 116 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEe--ecceeEEEe---ccC--------CCcceeeeECCCcceEeeeecceeEE
Confidence 56667788888777776 56878999999 666643333 222 36799999999996555 44557778
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCce---EEEE-eccCceeeeeecccccCccccccCccccCCCC
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ---ILVM-THDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t---V~l~-~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+|++.+.....+.+...++..++|.|||+..|+++.-.. |.+. -+.|..+.+..+.+.+
T Consensus 117 TVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D---------------- 180 (447)
T KOG4497|consen 117 TVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID---------------- 180 (447)
T ss_pred EEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc----------------
Confidence 8899999888878877888999999999999999986422 2233 2557776666655443
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC----------
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---------- 245 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~---------- 245 (1196)
...|.|||||..+| |= |.. -+-+|..|.+..| +-.++|||.|++||.|+.|+-
T Consensus 181 ltgieWsPdg~~la-Vw--d~~--Leykv~aYe~~lG------------~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 181 LTGIEWSPDGNWLA-VW--DNV--LEYKVYAYERGLG------------LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred ccCceECCCCcEEE-Ee--cch--hhheeeeeeeccc------------eeEEEeccccceEEeeccchhhhhhceeeee
Confidence 36788999999988 52 211 2334555555222 367889999999999887621
Q ss_pred ---------CCCCCe---------------------------EEEEeCCCeeEEE------E-Eec------cCCCCcEE
Q 000992 246 ---------ENKCPS---------------------------IVFYERNGLERSS------F-DIN------EQIDSTVE 276 (1196)
Q Consensus 246 ---------~~~~~~---------------------------V~~~e~nGl~~~~------f-~l~------~~~~~~V~ 276 (1196)
.-.+.+ ...|+....+..+ + .++ .| --.+.
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP-k~g~g 322 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP-KCGAG 322 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc-ccccc
Confidence 000000 0001100000000 0 011 01 12477
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeec
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1196)
-|+||+|++++|+-.+.- -+.+.|||+.|.+- ... ..+..+ ..+.|||..+. |.+.++. ...| .|..+
T Consensus 323 ~lafs~Ds~y~aTrnd~~-PnalW~Wdlq~l~l--~av--LiQk~piraf~WdP~~pr-L~vctg~--srLY--~W~ps- 391 (447)
T KOG4497|consen 323 KLAFSCDSTYAATRNDKY-PNALWLWDLQNLKL--HAV--LIQKHPIRAFEWDPGRPR-LVVCTGK--SRLY--FWAPS- 391 (447)
T ss_pred eeeecCCceEEeeecCCC-CceEEEEechhhhh--hhh--hhhccceeEEEeCCCCce-EEEEcCC--ceEE--EEcCC-
Confidence 899999999999976543 23799999998431 001 112233 67899998886 6666632 2222 33321
Q ss_pred CCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
+-..| .+|.|- -+|.++-|..+| ..++..+.|.
T Consensus 392 -g~~~V----------------~vP~~G--------F~i~~l~W~~~g--~~i~l~~kDa 424 (447)
T KOG4497|consen 392 -GPRVV----------------GVPKKG--------FNIQKLQWLQPG--EFIVLCGKDA 424 (447)
T ss_pred -CceEE----------------ecCCCC--------ceeeeEEecCCC--cEEEEEcCCc
Confidence 11111 112221 257889999999 7777777764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-13 Score=144.16 Aligned_cols=266 Identities=15% Similarity=0.219 Sum_probs=174.9
Q ss_pred ecCcEEEEEECCCCCEEEEEeCCceEEEEec-c----CceeeeeecccccCccccccCccccCCCCeEEEEEcc--CCce
Q 000992 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTH-D----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKY 187 (1196)
Q Consensus 115 ~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~----~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~ 187 (1196)
|++=|.++.|.+-|+.+|+++.|++|++|.. . |... ..++.|++.|+.|.|-+ =|+.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T----------------s~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT----------------SSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe----------------eeEEecCCcEEEEEecCccccce
Confidence 4677999999999999999999999999862 1 2211 13457888999999965 5889
Q ss_pred EEEeeccccccCCCCEEEEEECCCC---------cEEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEe
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSG---------TLQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G---------~l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+|+ .+ .||+++||.-..- ....++....+.+.+|.|.|. |-.+|+++.|+ .+++||
T Consensus 76 vA~-cS------~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG------~lRIYE 142 (361)
T KOG2445|consen 76 VAT-CS------YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG------ILRIYE 142 (361)
T ss_pred EEE-Ee------cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc------EEEEEe
Confidence 994 54 3799999976211 122334445567899999996 77899999864 699998
Q ss_pred C-CCeeEEEEEec----------cCCCCcEEEEEEccC---CCeeEEEEccCC--cceEEEEEecC-C-EEEEEEEEEEe
Q 000992 257 R-NGLERSSFDIN----------EQIDSTVELLKWNCM---SDLLAAVVRFEE--YDSVKICFFSN-N-HWYLKYEIRYL 318 (1196)
Q Consensus 257 ~-nGl~~~~f~l~----------~~~~~~V~~laWSpD---g~~LAs~~~d~~--~~~V~lW~~~n-~-~wylkq~l~~~ 318 (1196)
. +-.-..+++|. +.......+|.|+|. .+.||+|+.+.. -+.++||..+. . +|....++..+
T Consensus 143 A~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~ 222 (361)
T KOG2445|consen 143 APDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH 222 (361)
T ss_pred cCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC
Confidence 3 21111222221 112345779999974 468999998732 22599999763 3 56555667644
Q ss_pred cCCcEEEEEccCCCc---eEEEEecCCcEEEEEEEEeeec-CCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCC
Q 000992 319 RRDGIRFMWHPTKPL---QLICWTLDGQITTYNFIWTTAV-MENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTA 393 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~---~L~~~~~~g~~~~~~~~~~~~~-~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~ 393 (1196)
.+-...++|.|.-+. .|++++.+| +.++...-.-.+ ..... -++. .++.+.... ..++ .|.+.
T Consensus 223 ~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~---~~~~--~~~~l~v~~------vs~~~~H~~~ 290 (361)
T KOG2445|consen 223 TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEV---LAPD--LMTDLPVEK------VSELDDHNGE 290 (361)
T ss_pred CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcc---cCCC--CccccceEE------eeeccCCCCc
Confidence 333489999998763 577888887 654433210000 00000 0000 011111100 1123 38889
Q ss_pred EEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 394 VTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 394 V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
||.|.|.-.| .+|++.+.||+|++|+..
T Consensus 291 VWrv~wNmtG--tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 291 VWRVRWNMTG--TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEEEEeeee--eEEeecCCCceeeehhhh
Confidence 9999999999 899999999999999875
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-11 Score=139.69 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=111.7
Q ss_pred ccHHHHhhCHHHHHHHHHHcCC--------------CcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcc
Q 000992 938 YTIDLRLQRFENALKHIVSMGD--------------SYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~--------------~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
-.|..|+|+-+||.+.-.+.|+ ..+.+|+.++.+. +-|.-|++|++.......++.. --+...
T Consensus 945 VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA-qafsnAIRlcKEnd~~d~L~nl--al~s~~ 1021 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRA-QAFSNAIRLCKENDMKDRLANL--ALMSGG 1021 (1416)
T ss_pred eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHH--HhhcCc
Confidence 3566667777777665444442 1256777777777 7888888887111111112211 123344
Q ss_pred cCHHHHHHHHHhCC-CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH---HHHHHHHHhcCC
Q 000992 1004 KCFEDAATTYFCCS-SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG---EAAKIALDYCGD 1079 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag-~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~---eAa~i~~~yl~d 1079 (1196)
.+.-.||.+|+.+| +..+|+..|.++|..-+|+.+|-+-.. -..+.-+|+.|....+.+ -++..|.. -..
T Consensus 1022 ~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQ-----f~aL~lIa~DLd~~sDp~ll~RcadFF~~-~~q 1095 (1416)
T KOG3617|consen 1022 SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQ-----FSALDLIAKDLDAGSDPKLLRRCADFFEN-NQQ 1095 (1416)
T ss_pred hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcc-----cHHHHHHHHhcCCCCCHHHHHHHHHHHHh-HHH
Confidence 55667777777776 777777777777777777777754321 123444555554433333 34444444 567
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHhcCCc---hhHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 000992 1080 VTNGISLLIDARDWEEALRVAFMHRRE---DLITKVKHAS-----LECASSLIGEYKEGLEKVG 1135 (1196)
Q Consensus 1080 ~~~Ai~~y~~~~~w~eA~rla~~~~~~---dL~e~v~~~l-----~e~~~~~~e~l~~~~~~~~ 1135 (1196)
++.||.++|.+++|++|+.||...+.+ ++-|.+-|.- .+.-.+++++++|+-.|=.
T Consensus 1096 yekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG 1159 (1416)
T KOG3617|consen 1096 YEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQG 1159 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999876632 2222232222 2334556777777654433
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-13 Score=145.50 Aligned_cols=241 Identities=17% Similarity=0.163 Sum_probs=168.6
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc--eEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK--YFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~--~lA 189 (1196)
..+|.+.|+|+|-| |.++|+||.|.+|.+++ ......+.... .|.+.++.+.|.|+-. .|.
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYD----m~k~~qlg~ll-----------~HagsitaL~F~~~~S~shLl 101 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYD----MRKRKQLGILL-----------SHAGSITALKFYPPLSKSHLL 101 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEe----ccchhhhccee-----------ccccceEEEEecCCcchhhee
Confidence 45688999999986 89999999999998754 33333332222 4567889999999985 565
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~ 268 (1196)
+++ .|+.|-||+...-++..++.+|.+.|+.|+.+|+|++-.+.++| ..++.|+. +|. +-|.++
T Consensus 102 -S~s------dDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D------~~lr~WNLV~Gr--~a~v~~ 166 (362)
T KOG0294|consen 102 -SGS------DDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGD------QVLRTWNLVRGR--VAFVLN 166 (362)
T ss_pred -eec------CCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCC------ceeeeehhhcCc--cceeec
Confidence 354 47999999998889999999999999999999999998888886 46999994 442 346666
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
..+. -..|.|+|.|++.++.+.++ |-+|.+.+-+-+ .++..+ ....++.|...+ .|.++.
T Consensus 167 L~~~--at~v~w~~~Gd~F~v~~~~~----i~i~q~d~A~v~--~~i~~~-~r~l~~~~l~~~--~L~vG~--------- 226 (362)
T KOG0294|consen 167 LKNK--ATLVSWSPQGDHFVVSGRNK----IDIYQLDNASVF--REIENP-KRILCATFLDGS--ELLVGG--------- 226 (362)
T ss_pred cCCc--ceeeEEcCCCCEEEEEeccE----EEEEecccHhHh--hhhhcc-ccceeeeecCCc--eEEEec---------
Confidence 4332 33499999999999999997 999999875421 122221 112344444322 123332
Q ss_pred EEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 349 FIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 349 ~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
|...+++++-.. .. |.+ .-+.|+..|.++.+--+..+.+|+++++||.|++|+.+.
T Consensus 227 ----------------d~~~i~~~D~ds-~~--~~~-~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 227 ----------------DNEWISLKDTDS-DT--PLT-EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred ----------------CCceEEEeccCC-Cc--cce-eeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 222333333221 11 112 234699999999876554347999999999999999974
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-13 Score=145.54 Aligned_cols=285 Identities=17% Similarity=0.142 Sum_probs=178.9
Q ss_pred EEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccc-cCCCCeEEEEEc-------cCCceEEE
Q 000992 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWR-------GDGKYFAT 190 (1196)
Q Consensus 119 I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~-~~~~~v~~isWs-------pDG~~lAs 190 (1196)
.....|||||..|.+-+.|+.+.+|+.-++...+..-....-.++.+ .+ .....|...+|- |+..++|
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~---~r~~eg~tvydy~wYs~M~s~qP~t~l~a- 127 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLS---YRYQEGETVYDYCWYSRMKSDQPSTNLFA- 127 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcccccccee---EEeccCCEEEEEEeeeccccCCCccceee-
Confidence 44567999999999999999999998665554433111110000000 00 112456888996 8889999
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEeccCCCc-----eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS 263 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-----v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~ 263 (1196)
+++ .+.-|++||..+|++.......+.. -.+|+|||||..|-+|- +..|++|+. -|..-.
T Consensus 128 ~ss------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------krcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 128 VSS------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------KRCIRVFDTSRPGRDCP 194 (406)
T ss_pred ecc------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-------cceEEEeeccCCCCCCc
Confidence 676 4578999999999998877654332 37999999999998764 357999984 332211
Q ss_pred EEEeccC----CCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 264 SFDINEQ----IDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 264 ~f~l~~~----~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
.+....+ ..+-+..++||| |++.||+++..+ ++-|+...+..- -+.+..+..+++.+.|+++|.. |..+
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q---~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~-lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ---RVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNK-LFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccc---eeeeEecCCCCc--eeeecccCCCeeeEEeccCcCe-eccc
Confidence 1111111 123477899999 567999999887 777777665432 2334444444589999999974 4443
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCC-CEEEEEE--ecCCCCCEEEEEECC
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT-AVTEMAF--YSKSSKNCLAAILSD 414 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~-~V~~Vaf--spdg~~~~lAs~~~d 414 (1196)
.. -...|+.|++|...- |. +.|+ |.+ .-.-|-| .|+| +.||+++.|
T Consensus 269 aR------------------------k~dkIl~WDiR~~~~--pv--~~L~rhv~~TNQRI~FDld~~~--~~LasG~td 318 (406)
T KOG2919|consen 269 AR------------------------KDDKILCWDIRYSRD--PV--YALERHVGDTNQRILFDLDPKG--EILASGDTD 318 (406)
T ss_pred cc------------------------CCCeEEEEeehhccc--hh--hhhhhhccCccceEEEecCCCC--ceeeccCCC
Confidence 32 112455555553221 21 2222 222 1122333 3667 899999999
Q ss_pred CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 415 GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 415 g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
|.|++|++.+.-.+ .. ....+.+.+..+++.|-=.++|+++.
T Consensus 319 G~V~vwdlk~~gn~-------~s----v~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNE-------VS----VTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred ccEEEEecCCCCCc-------cc----ccccccccccceecCcccceeeeccC
Confidence 99999999863221 11 01134567888888888777887765
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8e-13 Score=141.19 Aligned_cols=310 Identities=12% Similarity=0.091 Sum_probs=192.7
Q ss_pred ceeEEeee-cCCCEEEEEeCCCcEEEEeccccc-ccccceee-ccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCC
Q 000992 22 ILQFSALD-IEQNRLFFASSANNIYSAQLSSFQ-NERASIKT-AISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d-~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG 97 (1196)
.++.+.+| +++..+.++..|+.|..||+...+ ++..--|. ++-.--+.|+-...-.|.++.|.| |.-++.++|-|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 78888998 567888888889999999983111 11100010 000000112111123689999999 566888899999
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCC---EEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGD---LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~---~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++++||.+|-+.-..=..++.|.+-+|||=.. ++|.|+.+-+|++ -|..++..-|... +|.+
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrL----CDi~SGs~sH~Ls-----------GHr~ 189 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL----CDIASGSFSHTLS-----------GHRD 189 (397)
T ss_pred eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEE----EeccCCcceeeec-----------cccC
Confidence 99999999865543334578899999999654 7888888888866 3444444444433 8889
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
+|..+.|+|-.+|+...++ .|+.||+||.... -+..++..|.
T Consensus 190 ~vlaV~Wsp~~e~vLatgs------aDg~irlWDiRrasgcf~~lD~hn------------------------------- 232 (397)
T KOG4283|consen 190 GVLAVEWSPSSEWVLATGS------ADGAIRLWDIRRASGCFRVLDQHN------------------------------- 232 (397)
T ss_pred ceEEEEeccCceeEEEecC------CCceEEEEEeecccceeEEeeccc-------------------------------
Confidence 9999999999998764555 4799999998321 1222222221
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
|.+......+..+.+.|+.+||++||.+|++.+.|. .+++|+..++.=.++.--....+....+.++
T Consensus 233 -----~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~----- 299 (397)
T KOG4283|consen 233 -----TKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNTLREFGPIIHNQTTSFAVH----- 299 (397)
T ss_pred -----CccCccccccccccceeeeeeecccchhhhhccCcc---ceEEeecccCcccccccccccccccccceEE-----
Confidence 111110011112356799999999999999998887 8999999876533332111111111222222
Q ss_pred eEEEEecCCcEEEEEEEEeeecCCCee--EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEE
Q 000992 334 QLICWTLDGQITTYNFIWTTAVMENST--ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAI 411 (1196)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~--v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~ 411 (1196)
+-+.+-.+ |+. -|.+.++ ..+-.|..|.++.. |-.+|.+-+|.|+- +..-++
T Consensus 300 ---~~~~~s~v----fv~--~p~~~~lall~~~sgs~ir~l~~---------------h~k~i~c~~~~~~f--q~~~tg 353 (397)
T KOG4283|consen 300 ---IQSMDSDV----FVL--FPNDGSLALLNLLEGSFVRRLST---------------HLKRINCAAYRPDF--EQCFTG 353 (397)
T ss_pred ---Eeecccce----EEE--EecCCeEEEEEccCceEEEeeec---------------ccceeeEEeecCch--hhhhcc
Confidence 11111111 111 1333222 33446666655543 34568899999998 788999
Q ss_pred ECCCcEEEEeC
Q 000992 412 LSDGCLCVVDL 422 (1196)
Q Consensus 412 ~~dg~v~lw~~ 422 (1196)
.-|+.|.-|..
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99999999987
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=145.77 Aligned_cols=240 Identities=14% Similarity=0.092 Sum_probs=165.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENP 154 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~ 154 (1196)
.-.++.|++-|..||+|-.||.|.|||..|..+ .++++|-.+|.+++|||||+.|.++|.|..|++|+ ..++++.++.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 378899999999999999999999999999665 47888899999999999999999999999999987 4455555544
Q ss_pred ccc---------ccCcccc-c-------cCccc-------cC-CC-----CeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 155 LEE---------LAEGFDV-H-------EPELS-------SS-FS-----FKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 155 l~~---------~~~~~~V-s-------~tqf~-------~~-~~-----~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
+.. ....+.| + -.+|. +. ++ .-.+..|.+-|+|+. +|. +.+.+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGt------sKGkl 177 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TGT------SKGKL 177 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE-Eec------CcceE
Confidence 321 1111111 0 00111 00 00 011234778899998 564 46899
Q ss_pred EEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE----EEEEeccCCC-----Cc
Q 000992 205 KVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER----SSFDINEQID-----ST 274 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~----~~f~l~~~~~-----~~ 274 (1196)
-|++.++-++...+.-.. ..+.+|-++-.|+.++.-+.| ..|+.++.....+ ++....-.-. ..
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD------RvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD------RVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC------ceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999998888888776444 567899999999999987775 4688888532211 1211100001 12
Q ss_pred EEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 275 VELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 275 V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
-..++||.||.++..++.. +|.+.||..+.+. |.+.+.+....- ..+.|||-.+.
T Consensus 252 Wk~ccfs~dgeYv~a~s~~--aHaLYIWE~~~Gs--LVKILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSAR--AHALYIWEKSIGS--LVKILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred hhheeecCCccEEEecccc--ceeEEEEecCCcc--eeeeecCCchhheeecccccceee
Confidence 3467889999999988843 5789999987653 455555533233 67889998775
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-13 Score=160.32 Aligned_cols=233 Identities=11% Similarity=0.031 Sum_probs=175.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.+.-|. .+.+..++.++.|..|+. .++.. +...+.+| .+.|.+++|..-+..|++|+.|.++++|
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~--~~~~~------i~~~l~GH----~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDL--NNGYL------ILTRLVGH----FGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeec--ccceE------EEeeccCC----CCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 3444444 566778888888889998 55443 22225556 4789999999888999999999999999
Q ss_pred ECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 103 SVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
|..++.+. +...|.+.|.++..-| -.+++||.|.+|++|+-. +...++... +|.+.|.++..
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~----n~~~l~l~~-----------~h~~~V~~v~~ 339 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT----NGACLNLLR-----------GHTGPVNCVQL 339 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEecc----CcceEEEec-----------cccccEEEEEe
Confidence 99998875 4445788898887754 588889999999998643 333343332 46678899988
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
. +.+++ +++ .|++|+||+..+|++++++.+|.+.|.++.+.+. +.+.+|+-|+ .|+.|+..+.+
T Consensus 340 ~--~~~lv-sgs------~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~------~IkvWdl~~~~ 403 (537)
T KOG0274|consen 340 D--EPLLV-SGS------YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT------TIKVWDLRTKR 403 (537)
T ss_pred c--CCEEE-EEe------cCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc------ceEeecCCchh
Confidence 7 66777 465 3679999999999999999999999999987776 8999999875 59999987652
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.-..++..+ ...|. .....+++|.+++.|+ +|++||..++.
T Consensus 404 ~c~~tl~~h-~~~v~--~l~~~~~~Lvs~~aD~---~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 404 KCIHTLQGH-TSLVS--SLLLRDNFLVSSSADG---TIKLWDAEEGE 444 (537)
T ss_pred hhhhhhcCC-ccccc--ccccccceeEeccccc---cEEEeecccCc
Confidence 001123332 33443 3456789999999999 99999988764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=151.71 Aligned_cols=278 Identities=11% Similarity=0.126 Sum_probs=185.4
Q ss_pred eecCcEEEEEECCCC-CEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEee
Q 000992 114 RVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 114 ~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvs 192 (1196)
.|.+||.|++=.|.. .++|+|+.||.|++|+.. ...++. .|++|.+.|..|+..- +.+|- +|
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls----qR~~~~-----------~f~AH~G~V~Gi~v~~-~~~~t-vg 126 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS----QRECIR-----------TFKAHEGLVRGICVTQ-TSFFT-VG 126 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehh----hhhhhh-----------eeecccCceeeEEecc-cceEE-ec
Confidence 368899999999998 899999999999998632 111111 2446777888888887 54444 55
Q ss_pred ccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCC
Q 000992 193 EFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQI 271 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~ 271 (1196)
.|++||.|-. +|....+..+ ++.+..|.-+--++..|+++. .|.+|+.+-.. ...+.. +
T Consensus 127 -------dDKtvK~wk~-~~~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--------~i~IWD~~R~~Pv~smsw---G 186 (433)
T KOG0268|consen 127 -------DDKTVKQWKI-DGPPLHTILG-KSVYLGIDHHRKNSVFATCGE--------QIDIWDEQRDNPVSSMSW---G 186 (433)
T ss_pred -------CCcceeeeec-cCCcceeeec-cccccccccccccccccccCc--------eeeecccccCCccceeec---C
Confidence 4799999999 8866665543 333466666667788898876 48889864211 112221 2
Q ss_pred CCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEE
Q 000992 272 DSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 272 ~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
...|.++.|||--+ +||++.+|+ +|-|+|+....-..|-.+.. ....++|+|+. ..+.+++.|-.
T Consensus 187 ~Dti~svkfNpvETsILas~~sDr---sIvLyD~R~~~Pl~KVi~~m---RTN~IswnPea-fnF~~a~ED~n------- 252 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDR---SIVLYDLRQASPLKKVILTM---RTNTICWNPEA-FNFVAANEDHN------- 252 (433)
T ss_pred CCceeEEecCCCcchheeeeccCC---ceEEEecccCCccceeeeec---cccceecCccc-cceeecccccc-------
Confidence 35689999999765 788888999 89999987654322212211 11568999954 33444444322
Q ss_pred EeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcccc
Q 000992 351 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED 430 (1196)
Q Consensus 351 ~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~ 430 (1196)
+.+.+.+ ++-.|.-.+ ..|-+.|.+|+|||.| +-+++++-|.+|+||.......-..
T Consensus 253 ------------------lY~~DmR--~l~~p~~v~-~dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 253 ------------------LYTYDMR--NLSRPLNVH-KDHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred ------------------ceehhhh--hhcccchhh-cccceeEEEeccCCCc--chhccccccceEEEeecCCCcchhh
Confidence 2222322 222222211 2578899999999999 8999999999999999874211100
Q ss_pred ccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
..- ..-..|.++.||-|.+++.+|+++ ..+.+|..
T Consensus 310 Yht-----------kRMq~V~~Vk~S~Dskyi~SGSdd--~nvRlWka 344 (433)
T KOG0268|consen 310 YHT-----------KRMQHVFCVKYSMDSKYIISGSDD--GNVRLWKA 344 (433)
T ss_pred hhH-----------hhhheeeEEEEeccccEEEecCCC--cceeeeec
Confidence 000 011268999999999999999987 46778864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-13 Score=142.79 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=114.0
Q ss_pred EEEEEEccCCCEEEEEEC----------CCcEEEEEC--CCCeEEEeee-ecCcEEEEEECCCCCEEEEEeC--CceEEE
Q 000992 78 ITAFDYLMEKEALIVGTS----------SGLLLLHSV--DGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG--FGQILV 142 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~----------dG~I~lw~~--~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~--d~tV~l 142 (1196)
=..+.|+|+|+.||+-.. -|+..||-. .+...+.+.- .++.|.+++|||+|+.+|++.+ +++|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 357899999999987654 133444443 4444443332 2456999999999999988864 468888
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
|+...+++.... ...+..|.|||+|+++| +++.+. ..+.+++||.++.+.+.+.+..
T Consensus 88 yd~~~~~i~~~~------------------~~~~n~i~wsP~G~~l~-~~g~~n---~~G~l~~wd~~~~~~i~~~~~~- 144 (194)
T PF08662_consen 88 YDVKGKKIFSFG------------------TQPRNTISWSPDGRFLV-LAGFGN---LNGDLEFWDVRKKKKISTFEHS- 144 (194)
T ss_pred EcCcccEeEeec------------------CCCceEEEECCCCCEEE-EEEccC---CCcEEEEEECCCCEEeeccccC-
Confidence 876555444332 12457899999999999 676432 3478999999888888776633
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
....++|||||+++|++...+....+..+++|+-+|....
T Consensus 145 -~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~ 184 (194)
T PF08662_consen 145 -DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLY 184 (194)
T ss_pred -cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeE
Confidence 3689999999999999875422223467899998886544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7e-13 Score=159.52 Aligned_cols=225 Identities=13% Similarity=0.076 Sum_probs=137.0
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~ 151 (1196)
..+.+.+|||||+.|+.++.. ..|.+||+.+++...+....+.+.+.+|||||+.||.+ +.++...+|..+-+.-.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468899999999999988743 35999999988766554456677899999999999864 56777666643211100
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
...+. .+.......+|+|||+++++ .+.. .+...|.+.+..+|....... ..+.....+||
T Consensus 276 ~~~lt--------------~~~~~~~~~~wSpDG~~l~f-~s~~---~g~~~Iy~~~~~~g~~~~lt~-~g~~~~~~~~S 336 (427)
T PRK02889 276 LRRLT--------------QSSGIDTEPFFSPDGRSIYF-TSDR---GGAPQIYRMPASGGAAQRVTF-TGSYNTSPRIS 336 (427)
T ss_pred cEECC--------------CCCCCCcCeEEcCCCCEEEE-EecC---CCCcEEEEEECCCCceEEEec-CCCCcCceEEC
Confidence 11111 11123356889999999984 3311 122344444554555444332 12233568999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
|||++||.++...+ ...|.+|+..+..... +.. .......+|||||+.|+..+.++....+.+-+.... .
T Consensus 337 pDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~--lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~---~ 406 (427)
T PRK02889 337 PDGKLLAYISRVGG---AFKLYVQDLATGQVTA--LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR---I 406 (427)
T ss_pred CCCCEEEEEEccCC---cEEEEEEECCCCCeEE--ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCC---c
Confidence 99999998876432 3468889865433222 221 123467899999999999987764333333333321 1
Q ss_pred EEEEEEecCCcEEEEEcc
Q 000992 312 KYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp 329 (1196)
.+.+..+........|+|
T Consensus 407 ~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGP 424 (427)
T ss_pred eEEeecCCCCCCCCccCC
Confidence 223322222224567776
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-12 Score=136.05 Aligned_cols=283 Identities=14% Similarity=0.131 Sum_probs=181.8
Q ss_pred CCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 73 EPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 73 ~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
.|.+.|.+|.|+|.++.|.+++=||++++|+..+..+...=.|..+|.+.+|-++ ..+++++-||+|++.+..... +
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--c
Confidence 3468999999999999999999999999999988655433346889999999986 788999999999876533211 1
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.|...|+..+.+|..++--..++ +++ .|++|++||..+-...-+++. ...|.++ +-
T Consensus 88 --------------~~igth~~~i~ci~~~~~~~~vI-sgs------WD~~ik~wD~R~~~~~~~~d~-~kkVy~~--~v 143 (323)
T KOG1036|consen 88 --------------DQIGTHDEGIRCIEYSYEVGCVI-SGS------WDKTIKFWDPRNKVVVGTFDQ-GKKVYCM--DV 143 (323)
T ss_pred --------------eeeccCCCceEEEEeeccCCeEE-Ecc------cCccEEEEecccccccccccc-CceEEEE--ec
Confidence 12225667889999986444455 355 469999999954333333332 2234444 45
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
.|+.|..|..+ ..|.+|+.-.+.. -|..+ ......+.+|+.-|+++=-|+++-+| .|-+
T Consensus 144 ~g~~LvVg~~~------r~v~iyDLRn~~~-~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG---RVav---------- 203 (323)
T KOG1036|consen 144 SGNRLVVGTSD------RKVLIYDLRNLDE-PFQRRESSLKYQTRCVALVPNGEGYVVSSIEG---RVAV---------- 203 (323)
T ss_pred cCCEEEEeecC------ceEEEEEcccccc-hhhhccccceeEEEEEEEecCCCceEEEeecc---eEEE----------
Confidence 67777776654 3588898422211 11111 11124588999999888888888777 3321
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCC
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFP 391 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~ 391 (1196)
.|...+ ++... ..++|.-... .-+|.. .+
T Consensus 204 ----E~~d~s-------~~~~s-------------kkyaFkCHr~------~~~~~~-~~-------------------- 232 (323)
T KOG1036|consen 204 ----EYFDDS-------EEAQS-------------KKYAFKCHRL------SEKDTE-II-------------------- 232 (323)
T ss_pred ----EccCCc-------hHHhh-------------hceeEEeeec------ccCCce-EE--------------------
Confidence 110000 00000 0011110000 001111 11
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
-+|++++|+|-. +.||+|++||.|-+|+..+...+..+.+. ..+|..++|+.||..||+++.
T Consensus 233 yPVNai~Fhp~~--~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~------------~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 233 YPVNAIAFHPIH--GTFATGGSDGIVNIWDLFNRKRLKQLAKY------------ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeceeEecccc--ceEEecCCCceEEEccCcchhhhhhccCC------------CCceEEEEeccCCCeEEEEec
Confidence 268999999987 89999999999999999875544223221 246999999999999999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-13 Score=159.52 Aligned_cols=223 Identities=16% Similarity=0.139 Sum_probs=141.5
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~--tV~l~~~~~d~ 149 (1196)
..+.+.+|+|||+.|+.++.. ..|.+||..+++...+..+.+...+.+|||||+.|+.+ +.++ .|.+|+.....
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 468899999999999988743 46999999988766555445556689999999988765 4454 46666532211
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
+. .+. .+......++|+|||++|+ .++.. .+...|.++|..+|+...... .......++
T Consensus 284 ~~--~lt--------------~~~~~~~~~~~spDG~~l~-f~sd~---~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~ 342 (433)
T PRK04922 284 LT--RLT--------------NHFGIDTEPTWAPDGKSIY-FTSDR---GGRPQIYRVAASGGSAERLTF-QGNYNARAS 342 (433)
T ss_pred eE--ECc--------------cCCCCccceEECCCCCEEE-EEECC---CCCceEEEEECCCCCeEEeec-CCCCccCEE
Confidence 11 111 1112235789999999998 44421 123457777876676554332 223345789
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|||||+.||..+.+.+ ...|.+|+..+..... +. + .....+.+|||||+.|+..+.+++...+.+|+..+..
T Consensus 343 ~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~~--Lt-~-~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~- 414 (433)
T PRK04922 343 VSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVRT--LT-P-GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV- 414 (433)
T ss_pred ECCCCCEEEEEECCCC---ceeEEEEECCCCCeEE--CC-C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc-
Confidence 9999999998765422 4578899975433322 22 1 1235578999999999988876544467777775421
Q ss_pred EEEEEEEEecCCcEEEEEcc
Q 000992 310 YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+.+..+........|+|
T Consensus 415 --~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 --RQRLVSADGEVREPAWSP 432 (433)
T ss_pred --eEEcccCCCCCCCCccCC
Confidence 233332212225567776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=153.91 Aligned_cols=205 Identities=12% Similarity=0.057 Sum_probs=134.2
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC---CceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.+||.++.....+..+...|.+.+|||||+.||.++. +.+|.+|+...... ..+. .+..
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~--------------~~~g 246 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVG--------------NFPG 246 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEee--------------cCCC
Confidence 788899988766655555778999999999999999873 45777775321111 1111 1123
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+...+|||||+.|+.+.+. .+...|.+||..+|++.. +..+.+.....+|+|||+.||.++.... ...|.+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g---~~~Iy~ 318 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQ----GGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSG---SPQLYV 318 (435)
T ss_pred cccCcEECCCCCEEEEEEec----CCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCC---CCeEEE
Confidence 44678999999988733332 134568888997776654 3335556678999999999998875422 356777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
++.+|.....++. ....+...+|||||+.||....+.+...|.+|+...... +.+.. ........|+|++..
T Consensus 319 ~d~~g~~~~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~-~~~~~~p~~spDG~~ 390 (435)
T PRK05137 319 MNADGSNPRRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE---RILTS-GFLVEGPTWAPNGRV 390 (435)
T ss_pred EECCCCCeEEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce---EeccC-CCCCCCCeECCCCCE
Confidence 8877643332221 123466789999999999987654334688888754322 11211 111245789999875
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-12 Score=155.17 Aligned_cols=272 Identities=12% Similarity=0.034 Sum_probs=186.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-E-eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~-vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
..++...|. ...+.+++.+++|++|+..++... . .-.|.++|+++++.--+..|.+|+.|.|+++|+ ..++.
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd----~~sg~ 282 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD----CSTGE 282 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe----cCCCc
Confidence 457777777 567888999999999999887543 2 334699999999988789999999999999876 22334
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
+.+... +|.+.+.++.-. +-+++ +++ .|.+||||+.++|+++.++.+|.+.|.++...
T Consensus 283 C~~~l~-----------gh~stv~~~~~~--~~~~~-sgs------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 283 CTHSLQ-----------GHTSSVRCLTID--PFLLV-SGS------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-- 340 (537)
T ss_pred EEEEec-----------CCCceEEEEEcc--CceEe-ecc------CCceEEEEeccCcceEEEeccccccEEEEEec--
Confidence 433322 555666666643 33455 344 57999999998899999999999999999988
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE--EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSSF--DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f--~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
+.++.+|+.|. .|++|+.. .+++ .+.+ |..+|.++.+.+. ..+.+|+.|+ +|++||..+.. .+
T Consensus 341 ~~~lvsgs~d~------~v~VW~~~---~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-~c 405 (537)
T KOG0274|consen 341 EPLLVSGSYDG------TVKVWDPR---TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-KC 405 (537)
T ss_pred CCEEEEEecCc------eEEEEEhh---hceeeeeecC-CcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-hh
Confidence 88999999863 69999965 3332 2334 5788999987776 9999999998 99999999852 12
Q ss_pred EEEEEEecCCcEEEEEccCC-CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 312 KYEIRYLRRDGIRFMWHPTK-PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~-~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
.+.+..|. .+.++-.- ...|...+ .|| +|++|+..... +.++++.
T Consensus 406 ~~tl~~h~----~~v~~l~~~~~~Lvs~~------------------------aD~-~Ik~WD~~~~~-----~~~~~~~ 451 (537)
T KOG0274|consen 406 IHTLQGHT----SLVSSLLLRDNFLVSSS------------------------ADG-TIKLWDAEEGE-----CLRTLEG 451 (537)
T ss_pred hhhhcCCc----ccccccccccceeEecc------------------------ccc-cEEEeecccCc-----eeeeecc
Confidence 22232211 11100000 01111111 233 56666554322 3344433
Q ss_pred --CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 391 --PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 391 --~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
...|..+++. + ..+++++.||++++|++.+..+.
T Consensus 452 ~~~~~v~~l~~~-~---~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 452 RHVGGVSALALG-K---EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred CCcccEEEeecC-c---ceEEEEecCCeeEEEecccCchh
Confidence 3678888877 2 47888889999999999864433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=146.68 Aligned_cols=322 Identities=15% Similarity=0.157 Sum_probs=189.9
Q ss_pred EEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCC
Q 000992 121 FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 121 ~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~ 200 (1196)
-.+|||+|+++|+++.-. +++ |+-+.+ .++..- .--+.|..|-|+.|..++. ++.. .
T Consensus 13 ~c~fSp~g~yiAs~~~yr-lvi--Rd~~tl---q~~qlf-----------~cldki~yieW~ads~~il-C~~y-----k 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR-LVI--RDSETL---QLHQLF-----------LCLDKIVYIEWKADSCHIL-CVAY-----K 69 (447)
T ss_pred ceeECCCCCeeeeeeeeE-EEE--eccchh---hHHHHH-----------HHHHHhhheeeeccceeee-eeee-----c
Confidence 467999999999998763 333 432211 111100 0013567899999999988 4432 3
Q ss_pred CCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEE
Q 000992 201 HKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~la 279 (1196)
+..|.+|+...-+-... -++..|+ .+++|||||+.|...+.. ...|.+|..|...- .-++-+. ..+..++
T Consensus 70 ~~~vqvwsl~Qpew~ckIdeg~agl-s~~~WSPdgrhiL~tseF-----~lriTVWSL~t~~~--~~~~~pK-~~~kg~~ 140 (447)
T KOG4497|consen 70 DPKVQVWSLVQPEWYCKIDEGQAGL-SSISWSPDGRHILLTSEF-----DLRITVWSLNTQKG--YLLPHPK-TNVKGYA 140 (447)
T ss_pred cceEEEEEeecceeEEEeccCCCcc-eeeeECCCcceEeeeecc-----eeEEEEEEecccee--EEecccc-cCceeEE
Confidence 57999999854444333 3555554 899999999877766654 35788899875332 2233222 3478999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
|+|||++.|..+.....+.|+|...+. |.+-.+...+..+-+.+.|+|+|.. |++|..--.+.++.+
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~--W~ll~~f~~dT~DltgieWsPdg~~-laVwd~~Leykv~aY---------- 207 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKA--WILLKEFKLDTIDLTGIEWSPDGNW-LAVWDNVLEYKVYAY---------- 207 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHH--HHHHHhcCCCcccccCceECCCCcE-EEEecchhhheeeee----------
Confidence 999999999998765333455543332 3333333332222366889999865 666642111111100
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-------------
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD------------- 426 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~------------- 426 (1196)
+..-.+..|+|||.+ +.||+|+.|+.+++-+--+-.
T Consensus 208 -----------------------------e~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d 256 (447)
T KOG4497|consen 208 -----------------------------ERGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD 256 (447)
T ss_pred -----------------------------eeccceeEEEecccc--ceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence 112246788999988 899999999888775422100
Q ss_pred -cccccc---------CC-ceeeee----------------------ec--c------cccCCcEEEEEEecCCeEEEEE
Q 000992 427 -MLEDLE---------GT-EFVVEA----------------------CI--S------ETAFGSVIHLIWLGSHLLLSVS 465 (1196)
Q Consensus 427 -~~~~~~---------g~-~~~~~~----------------------~~--~------~~~~~~v~~l~~~~d~~lla~~ 465 (1196)
+...+. ++ .....+ .+ . ....-.+--++|++|.+++|+-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 000000 00 000000 00 0 1112256789999999999998
Q ss_pred ecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCC
Q 000992 466 HHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGG 545 (1196)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG 545 (1196)
.+...+-+++|++..- ++ .....-..+|.+..+.| ..-.+++-+..-
T Consensus 337 nd~~PnalW~Wdlq~l----------~l----------------------~avLiQk~piraf~WdP-~~prL~vctg~s 383 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNL----------KL----------------------HAVLIQKHPIRAFEWDP-GRPRLVVCTGKS 383 (447)
T ss_pred cCCCCceEEEEechhh----------hh----------------------hhhhhhccceeEEEeCC-CCceEEEEcCCc
Confidence 8877788888887210 00 00112245677777777 555666666666
Q ss_pred eEEEEe
Q 000992 546 KISEYM 551 (1196)
Q Consensus 546 ~v~~~~ 551 (1196)
++|.|.
T Consensus 384 rLY~W~ 389 (447)
T KOG4497|consen 384 RLYFWA 389 (447)
T ss_pred eEEEEc
Confidence 777774
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-10 Score=129.63 Aligned_cols=286 Identities=19% Similarity=0.248 Sum_probs=186.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe--EEEeeeec-CcEEEEEE-CCCCC-EEEEEeC-CceEEEEeccC-
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--TEVVGRVE-GGVRFISP-SPDGD-LLGVTTG-FGQILVMTHDW- 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~--~e~vg~~~-~~I~~~aw-SPDg~-~LA~~s~-d~tV~l~~~~~- 147 (1196)
.+.+..+.|.+.+..++.++.|+.+.+|+...+. ...+.... ..+..+.+ +|++. .++..+. |+++.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 4689999999999999999999999999998763 44333323 36888888 99998 5555555 88999887542
Q ss_pred -ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 148 -DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 148 -d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
....... .|...+..++|+|+|++++ +++. .++.+++|+..++....+..+|...+.
T Consensus 145 ~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~ 202 (466)
T COG2319 145 GKLIRTLE----------------GHSESVTSLAFSPDGKLLA-SGSS-----LDGTIKLWDLRTGKPLSTLAGHTDPVS 202 (466)
T ss_pred CeEEEEEe----------------cCcccEEEEEECCCCCEEE-ecCC-----CCCceEEEEcCCCceEEeeccCCCceE
Confidence 2222221 4456678999999999887 4431 268999999977888888888999999
Q ss_pred EEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 227 VLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 227 slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.++|+|+|. .+++++.+ ..|.+|+.. |..... .+..+ ...+ -..|+|++..+++++.++ .+++|+.
T Consensus 203 ~~~~~~~~~~~~~~~~~d------~~i~~wd~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~d~---~~~~~~~ 270 (466)
T COG2319 203 SLAFSPDGGLLIASGSSD------GTIRLWDLSTGKLLRS-TLSGH-SDSV-VSSFSPDGSLLASGSSDG---TIRLWDL 270 (466)
T ss_pred EEEEcCCcceEEEEecCC------CcEEEEECCCCcEEee-ecCCC-Ccce-eEeECCCCCEEEEecCCC---cEEEeee
Confidence 999999998 66664554 468899644 322221 12222 2222 228999999999999998 9999998
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
..... ....+..+......+.|+|++.. +.....++. +.+|++........+.
T Consensus 271 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~d~~-------------------------~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 271 RSSSS-LLRTLSGHSSSVLSVAFSPDGKL-LASGSSDGT-------------------------VRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCc-EEEEEecCCccEEEEEECCCCCE-EEEeeCCCc-------------------------EEEEEcCCCceEEEee
Confidence 75432 11122222222366788885554 333433332 2222221111111111
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEE-ECCCcEEEEeCCCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAI-LSDGCLCVVDLPAP 425 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~-~~dg~v~lw~~~~~ 425 (1196)
...|...|..+.|++++ ..++.+ ..|+.+.+|+....
T Consensus 324 --~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 361 (466)
T COG2319 324 --LKGHEGPVSSLSFSPDG--SLLVSGGSDDGTIRLWDLRTG 361 (466)
T ss_pred --ecccCCceEEEEECCCC--CEEEEeecCCCcEEeeecCCC
Confidence 12355568899994342 355555 68899999998753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-08 Score=117.64 Aligned_cols=251 Identities=14% Similarity=0.151 Sum_probs=160.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+....|+..++.|++...++-|+.|-+ +.+. |--. +. .-...+.|.+|.|..||..+|++.+||.|++
T Consensus 73 sV~vvTWNe~~QKLTtSDt~GlIiVWml--ykgs--W~EE-----Mi--NnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 73 SVMVVTWNENNQKLTTSDTSGLIIVWML--YKGS--WCEE-----MI--NNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred eEEEEEeccccccccccCCCceEEEEee--eccc--HHHH-----Hh--hCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 6777889998898988878888999988 5543 2110 10 0111356999999999999999999999999
Q ss_pred EECCCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee----------------------eeecc
Q 000992 102 HSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY----------------------ENPLE 156 (1196)
Q Consensus 102 w~~~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~----------------------~~~l~ 156 (1196)
=++++.++ +..|.+ ...+.||||.+.+..+-.+|...+.+..++-.. ++.+.
T Consensus 142 GsvdGNRIwgKeLkg~~---l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQL---LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred Eeeccceecchhcchhe---ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 88888765 344443 335679999999888888887777654332211 11111
Q ss_pred cccCccccc-----------cCccc-------------cCCCCeEEEEEccCCceEEEeeccccc---cCCCCEEEEEEC
Q 000992 157 ELAEGFDVH-----------EPELS-------------SSFSFKSPISWRGDGKYFATLSEFCNS---SKLHKRLKVWER 209 (1196)
Q Consensus 157 ~~~~~~~Vs-----------~tqf~-------------~~~~~v~~isWspDG~~lAsvss~d~~---~~~d~~irVWd~ 209 (1196)
+.+ -++|- ....+ ...-.++.+.|+++|..|| +.+.+.. ++..+.|..|.+
T Consensus 219 ~g~-~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLA-vcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 219 TGP-YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLA-VCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred cCc-cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEE-EccCcccccCccccceEEEecc
Confidence 111 00010 00000 0112467789999999999 7764422 133458999999
Q ss_pred CCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 210 DSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 210 ~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
-|+...++.-...-+++++|--.|-.||-+-+. .|-|=+ ++ | ...|-.-.+.++-
T Consensus 297 -~G~i~gtlkvpg~~It~lsWEg~gLriA~Avds-------fiyfan----------IR-P------~ykWgy~e~TvVy 351 (1189)
T KOG2041|consen 297 -YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS-------FIYFAN----------IR-P------EYKWGYIEETVVY 351 (1189)
T ss_pred -chhheEEEecCCceeeeeEEcCCceEEEEEecc-------eEEEEe----------ec-c------cceEEEeeeEEEE
Confidence 999999998767778999999999999887542 232211 11 1 1223332333332
Q ss_pred EE--ccCCcceEEEEEecCCEEEEEE
Q 000992 290 VV--RFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 290 ~~--~d~~~~~V~lW~~~n~~wylkq 313 (1196)
.. .+.+...|.+||+.+..-|+|.
T Consensus 352 ~y~~~e~p~y~i~Fwdtk~nek~vK~ 377 (1189)
T KOG2041|consen 352 VYQKEELPQYGIMFWDTKTNEKTVKT 377 (1189)
T ss_pred EEccCCCcceEEEEEecccChhhhhh
Confidence 22 2334457999999987666653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=157.50 Aligned_cols=221 Identities=13% Similarity=0.126 Sum_probs=146.1
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG 97 (1196)
.+...+|.+|+..|++++. ..+|+.|++ ..++.. . +..+ .+.+.++.|||||+.|+.+ +.+|
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl--~~G~~~-~-------l~~~----~~~~~~~~~SPDG~~La~~~~~~g 265 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTL--ANGAVR-Q-------VASF----PRHNGAPAFSPDGSKLAFALSKTG 265 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEEC--CCCCeE-E-------ccCC----CCCcCCeEECCCCCEEEEEEcCCC
Confidence 6778999999999988753 447999998 444321 1 1111 1234568999999999876 4455
Q ss_pred --cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC-ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+|.+||.+++.+..+......+...+|||||+.|+.++.+ +...+|..+-+.-....+.. ...
T Consensus 266 ~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~--------------~~~ 331 (429)
T PRK03629 266 SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW--------------EGS 331 (429)
T ss_pred CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec--------------CCC
Confidence 4888999988776444335568899999999999998864 34444432111100011110 011
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.....+|||||+++|+++. + .+...|.+||..+|+....... ....+.+|||||+.|+.++.+.. ...+.+
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~-~---~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~ 402 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSS-N---GGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGM---GSVLNL 402 (429)
T ss_pred CccCEEECCCCCEEEEEEc-c---CCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 2356899999999984333 2 1346799999978876654432 23457899999999999987643 345777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
++.+|.... .++. +.+.+...+|||
T Consensus 403 ~~~~G~~~~--~l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 403 VSTDGRFKA--RLPA-TDGQVKFPAWSP 427 (429)
T ss_pred EECCCCCeE--ECcc-CCCCcCCcccCC
Confidence 888876543 3443 245688999998
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-11 Score=141.25 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=164.5
Q ss_pred EEEECCCcEEEEECCC-CeEEEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCc-eeeeeecccccCccccc
Q 000992 91 IVGTSSGLLLLHSVDG-NATEVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWD-LLYENPLEELAEGFDVH 165 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~-~~~e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs 165 (1196)
++...+|.|.+|+..+ ++++.+... .+....+++||||+.|.+++. ++.|.+|..+-+ .+.......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-------- 77 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-------- 77 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--------
Confidence 3446789999999964 444433322 356788999999999987754 677877753211 011110000
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCc---EEEEeccCCCceeEEEEcCCCCeEEEEe
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGT---LQASSELKAFMGAVLEWMPSGANIAAVY 241 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~---l~~~~e~~~~~v~slawsPdG~~IAs~s 241 (1196)
.......++|+|||+++. +++. .++.|.+|+.+ .|. ......+. ...+.++++|+|+++.++.
T Consensus 78 ------~~~~p~~i~~~~~g~~l~-v~~~-----~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~ 144 (330)
T PRK11028 78 ------LPGSPTHISTDHQGRFLF-SASY-----NANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPC 144 (330)
T ss_pred ------CCCCceEEEECCCCCEEE-EEEc-----CCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEee
Confidence 012346899999999988 5552 35899999885 343 22332222 2347789999999997766
Q ss_pred cCCCCCCCCeEEEEeCC--CeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecC--CEEEEEEE
Q 000992 242 DRKSENKCPSIVFYERN--GLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSN--NHWYLKYE 314 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~n--Gl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n--~~wylkq~ 314 (1196)
.. ...|.+|+.+ |..... ...+.+.......++|+|||++|.++.. ++ +|.+|++.. ....+.+.
T Consensus 145 ~~-----~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~---~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 145 LK-----EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNS---SVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CC-----CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCC---EEEEEEEeCCCCCEEEEEE
Confidence 54 3579999864 322100 0011111234678999999999999876 44 899999973 34434455
Q ss_pred EEEecCC------cEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 315 IRYLRRD------GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 315 l~~~~~~------~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
+...+.. ...+.++|++.. +.+.+. ++.+.+ |+++. ++..+++... +|
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~-lyv~~~~~~~I~v----~~i~~---------~~~~~~~~~~----~~------- 271 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRH-LYACDRTASLISV----FSVSE---------DGSVLSFEGH----QP------- 271 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCE-EEEecCCCCeEEE----EEEeC---------CCCeEEEeEE----Ee-------
Confidence 4322211 135788998865 555543 333332 22221 2222222111 11
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCC
Q 000992 388 LKFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1196)
Q Consensus 388 l~~~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~ 424 (1196)
.....+.++|+||| +.|+++.. +++|.+|+++.
T Consensus 272 --~~~~p~~~~~~~dg--~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 272 --TETQPRGFNIDHSG--KYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred --ccccCCceEECCCC--CEEEEEEccCCcEEEEEEcC
Confidence 11233568999999 78877665 89999998863
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=153.36 Aligned_cols=228 Identities=11% Similarity=0.090 Sum_probs=178.3
Q ss_pred Eeee-cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 26 SALD-IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 26 ~~~d-~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
.+|. .|+..+++++.|..|+.|.+ .+.+- +.+ |++| ...|.+++..-++. |+++|=|.|+++|-.
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~--~~~~P---~~~----LkgH----~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKL--SQAEP---LYT----LKGH----KSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred ceeccccCcceEeecccceEEEEec--CCCCc---hhh----hhcc----ccceeeeecCCcCc-eEecccccceEEecc
Confidence 4566 67778999999999999988 33321 222 6666 46899998888887 899999999999987
Q ss_pred CCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 105 DGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
....-. ...|...|++++.=|++ .+++||.|++|++|.- ...+. .|.+|.+-|..++.=++
T Consensus 130 ~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~----------------tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 130 GELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLK----------------TFSGHTDCVRGLAVLDD 190 (745)
T ss_pred hhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccC-Cchhh----------------hhccchhheeeeEEecC
Confidence 643223 44479999999999998 8899999999999853 22221 35588899999999999
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
+.++. ++ .|+.||.|+. +|+++....+|...+.+++-.+++..|+|++.|. ++++|... .....
T Consensus 191 ~~flS-cs-------NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDr------tlriW~~~-e~~q~ 254 (745)
T KOG0301|consen 191 SHFLS-CS-------NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDR------TLRIWKKD-ECVQV 254 (745)
T ss_pred CCeEe-ec-------CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCc------eEEEeecC-ceEEE
Confidence 87665 44 4799999999 9999999999999999999999999999999874 69999865 33333
Q ss_pred EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
.++| .-.||++..=++|.+ ++|++|+ .|++|+...-.|
T Consensus 255 I~lP---ttsiWsa~~L~NgDI-vvg~SDG---~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 255 ITLP---TTSIWSAKVLLNGDI-VVGGSDG---RVRVFTVDKDRK 292 (745)
T ss_pred EecC---ccceEEEEEeeCCCE-EEeccCc---eEEEEEeccccc
Confidence 3343 336999999899985 5666777 899999875443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-13 Score=159.36 Aligned_cols=215 Identities=15% Similarity=0.133 Sum_probs=140.5
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.+...+|.+|++.|++++.+ .+|+.||+ .+++.+ .+.. +. +...+++|+|||+.|++++ .+|
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl--~tg~~~-~l~~----~~-------g~~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDL--RSGARK-VVAS----FR-------GHNGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeC--CCCceE-EEec----CC-------CccCceeECCCCCEEEEEEecCC
Confidence 57788999999999988653 36999998 444321 1111 11 2344689999999999875 688
Q ss_pred cEEE--EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLL--HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~l--w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.+.| ||.+++.+..+..+...+.+.+|||||+.|+.++ .++...+|..+-+......+ ++..
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l---------------~~~~ 335 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV---------------GGRG 335 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe---------------cCCC
Confidence 7655 5777776654444456688999999999998876 46777776422111000001 0111
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
..++|||||++|+ ..+ .++ +.+||..+|+......+. ...+++|+|||++|++++.+.+ ...+.+
T Consensus 336 --~~~~~SpDG~~ia-~~~------~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~---~~~l~~ 400 (429)
T PRK01742 336 --YSAQISADGKTLV-MIN------GDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGL---GKVLQL 400 (429)
T ss_pred --CCccCCCCCCEEE-EEc------CCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCC---ceEEEE
Confidence 3578999999998 444 234 445898788765544332 2367899999999999987543 223444
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccC
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCM 283 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpD 283 (1196)
++.+|..... ++. +.+.+...+|||-
T Consensus 401 ~~~~G~~~~~--l~~-~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKAR--LPG-SDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEE--ccC-CCCCCCCcccCCC
Confidence 5667765443 332 2456889999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=139.58 Aligned_cols=231 Identities=15% Similarity=0.156 Sum_probs=160.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC--EEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE--ALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~--~La~as~dG~I 99 (1196)
.+.++|. ++--+.++|.|-.|..||. ..+.. ..+ +..| .+.|+++.|.+... .|.+|++||.|
T Consensus 45 sitavAV--s~~~~aSGssDetI~IYDm--~k~~q-lg~------ll~H----agsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSDETIHIYDM--RKRKQ-LGI------LLSH----AGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ceeEEEe--cceeEeccCCCCcEEEEec--cchhh-hcc------eecc----ccceEEEEecCCcchhheeeecCCCcE
Confidence 4555555 3455666677888999998 33221 111 2222 57999999999876 89999999999
Q ss_pred EEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeE
Q 000992 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.+|+...=+ +...-.|.+.|+.++..|.|++-.++++|+.+.+|+. .+....-..+... -.
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-----------------at 172 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-----------------AT 172 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc-----------------ce
Confidence 999987532 2344457888999999999999999999999977651 1221112222221 14
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
.|.|+|.|.+|+ ++. ++.|-||..++..+....+.. ..+.++-|= +++.+++|.++ ..|.+||.
T Consensus 173 ~v~w~~~Gd~F~-v~~-------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~------~~i~~~D~ 236 (362)
T KOG0294|consen 173 LVSWSPQGDHFV-VSG-------RNKIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDN------EWISLKDT 236 (362)
T ss_pred eeEEcCCCCEEE-EEe-------ccEEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCC------ceEEEecc
Confidence 599999999999 765 578999999666555544322 223455553 55566777665 36999998
Q ss_pred C-CeeEEEEEeccCCCCcEEEEEE--ccCCCeeEEEEccCCcceEEEEEecC
Q 000992 258 N-GLERSSFDINEQIDSTVELLKW--NCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 258 n-Gl~~~~f~l~~~~~~~V~~laW--SpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+ +.-..+| ..|+.+|.++.+ +|++.+|+++++|| .|++|++.-
T Consensus 237 ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~ 282 (362)
T KOG0294|consen 237 DSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDM 282 (362)
T ss_pred CCCccceee---ecchhheeeeEEEecCCceEEEEeccCc---eEEEEEccc
Confidence 7 3333333 235678999884 79999999999999 999999863
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.5e-11 Score=138.93 Aligned_cols=274 Identities=13% Similarity=0.088 Sum_probs=165.6
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECC-CCeE
Q 000992 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLLLLHSVD-GNAT 109 (1196)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG~I~lw~~~-~~~~ 109 (1196)
..+|++ ..+++|..|++. ..+... .+.+ .+. .+.+..++++||++.|.+++ .++.|..|+.+ ++.+
T Consensus 2 ~~~y~~~~~~~~I~~~~~~-~~g~l~-~~~~-------~~~--~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l 70 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLN-HEGALT-LLQV-------VDV--PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL 70 (330)
T ss_pred eEEEEEcCCCCCEEEEEEC-CCCcee-eeeE-------Eec--CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce
Confidence 357887 447889999993 222211 1121 111 24677899999999987764 57889999986 3455
Q ss_pred EEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 110 EVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 110 e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
..++.+ .+....++|+|||++|.+++. ++.|.+|..+-+.......... .+......++++|||+
T Consensus 71 ~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~p~g~ 138 (330)
T PRK11028 71 TFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII------------EGLEGCHSANIDPDNR 138 (330)
T ss_pred EEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec------------cCCCcccEeEeCCCCC
Confidence 433322 235678999999999998874 7788887532111000011000 0011235788999999
Q ss_pred eEEEeeccccccCCCCEEEEEECCC-CcEEE------EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDS-GTLQA------SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~-G~l~~------~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
++. ++.. ++.+|+|||.++ |.+.. .... ......++|+|||++++++... ..+|.+|+.+
T Consensus 139 ~l~-v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~ 206 (330)
T PRK11028 139 TLW-VPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKD 206 (330)
T ss_pred EEE-EeeC-----CCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeC
Confidence 987 5542 468999999855 44421 1111 2234789999999999888663 3589999864
Q ss_pred --CeeEEEEEec-cC----CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC--CEEEEEEEEEEecCCcEEEEEcc
Q 000992 259 --GLERSSFDIN-EQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 259 --Gl~~~~f~l~-~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n--~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
|...-...+. .+ +......+.++|||++|.++... .++|.+|++.. ..+.+.+.+... ..+..+.|+|
T Consensus 207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~--~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~ 283 (330)
T PRK11028 207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT--ASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH 283 (330)
T ss_pred CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC--CCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC
Confidence 3221111121 11 11234469999999999998542 23899999853 233333333221 1235688999
Q ss_pred CCCceEEEEec-CCcEE
Q 000992 330 TKPLQLICWTL-DGQIT 345 (1196)
Q Consensus 330 ~~~~~L~~~~~-~g~~~ 345 (1196)
++.. |.+... ++.+.
T Consensus 284 dg~~-l~va~~~~~~v~ 299 (330)
T PRK11028 284 SGKY-LIAAGQKSHHIS 299 (330)
T ss_pred CCCE-EEEEEccCCcEE
Confidence 8876 555553 45443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-12 Score=138.78 Aligned_cols=268 Identities=10% Similarity=0.089 Sum_probs=189.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+-|++.++.|.+.|=|+.+..++.. ..+. +.. +..+..+++.+|.++. .+++|+.||.|++
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~--~~~l--~~~----------~~~~~plL~c~F~d~~-~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVP--ANSL--KLK----------FKHGAPLLDCAFADES-TIVTGGLDGQVRR 79 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEecc--chhh--hhh----------eecCCceeeeeccCCc-eEEEeccCceEEE
Confidence 88899999999999999889989999883 2222 111 1124679999999865 6678999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
+|++++....+|.|..+|.|+..+|--..+++||.|++|++|+ +-........+. ...|.+++-
T Consensus 80 ~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD----~R~~~~~~~~d~------------~kkVy~~~v 143 (323)
T KOG1036|consen 80 YDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD----PRNKVVVGTFDQ------------GKKVYCMDV 143 (323)
T ss_pred EEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEe----cccccccccccc------------CceEEEEec
Confidence 9999999889999999999999999999999999999999875 222222111111 124566665
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
+ |..|+ |+. .++.+.+||..+-...... .+....+.+|+.-|+|.=.|++|-++ +..|-++|..-
T Consensus 144 ~--g~~Lv-Vg~------~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG----RVavE~~d~s~ 210 (323)
T KOG1036|consen 144 S--GNRLV-VGT------SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG----RVAVEYFDDSE 210 (323)
T ss_pred c--CCEEE-Eee------cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc----eEEEEccCCch
Confidence 5 44566 665 4699999998554322211 23456789999999888777777764 56666777541
Q ss_pred ---eeEEEEEec---cCC---CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 260 ---LERSSFDIN---EQI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 260 ---l~~~~f~l~---~~~---~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
.+..-|..+ ..+ -..|++|+|+|-.+.||+|+.|| .|-+|+..|.+- ++|--.+ +++..+++|+-+
T Consensus 211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG---~V~~Wd~~~rKr-l~q~~~~-~~SI~slsfs~d 285 (323)
T KOG1036|consen 211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG---IVNIWDLFNRKR-LKQLAKY-ETSISSLSFSMD 285 (323)
T ss_pred HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc---eEEEccCcchhh-hhhccCC-CCceEEEEeccC
Confidence 112223322 111 13699999999999999999999 999999998542 2221112 234477889988
Q ss_pred CCceEEEEe
Q 000992 331 KPLQLICWT 339 (1196)
Q Consensus 331 ~~~~L~~~~ 339 (1196)
|.. |++++
T Consensus 286 G~~-LAia~ 293 (323)
T KOG1036|consen 286 GSL-LAIAS 293 (323)
T ss_pred CCe-EEEEe
Confidence 864 77766
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-14 Score=165.41 Aligned_cols=226 Identities=11% Similarity=0.139 Sum_probs=168.4
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
+.-+..-+..+.++.++...-+|..+. -.. +. .+.+| ...|-++.|+++-..|+.|+++|+|++||+
T Consensus 33 ~lk~~~s~r~~~~Gg~~~k~~L~~i~k--p~~---i~----S~~~h----espIeSl~f~~~E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGGEDEKVNLWAIGK--PNA---IT----SLTGH----ESPIESLTFDTSERLLAAGSASGTIKVWDL 99 (825)
T ss_pred eeeeeccceeeccCCCceeeccccccC--Cch---hh----eeecc----CCcceeeecCcchhhhcccccCCceeeeeh
Confidence 333434445566666666565666621 111 11 13444 357999999999999999999999999999
Q ss_pred CCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 105 DGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 105 ~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
+..++ ..+..|...+..+.|+|=|++.|+++.|..+++|+.-. .-+.+. |.+|...+..+.|+|
T Consensus 100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk----~Gc~~~-----------~~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK----KGCSHT-----------YKSHTRVVDVLRLSP 164 (825)
T ss_pred hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc----cCceee-----------ecCCcceeEEEeecC
Confidence 87653 44444578899999999999999999999998875221 111111 224555678899999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
||++++ +++ +|.+++|||...|++...++.|.+.+.++-|.|.--++|+|+.|. +|+||+.. .-
T Consensus 165 ~Gr~v~-~g~------ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~------tv~f~dle---tf 228 (825)
T KOG0267|consen 165 DGRWVA-SGG------EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR------TVRFWDLE---TF 228 (825)
T ss_pred CCceee-ccC------CcceeeeecccccccccccccccccccccccCchhhhhccCCCCc------eeeeeccc---ee
Confidence 999999 664 479999999989999999999999999999999999999999864 69999853 11
Q ss_pred EEEec-cCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 264 SFDIN-EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 264 ~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+..-. .+....|.+++|+|||..+++|....
T Consensus 229 e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 229 EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 11111 33356799999999999999988765
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-12 Score=146.51 Aligned_cols=238 Identities=13% Similarity=0.208 Sum_probs=165.1
Q ss_pred CEEEEEeCCCcEEEEecccccccccceee--ccc-cccccccCCCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKT--AIS-AEIEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNA 108 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~ 108 (1196)
.+|.+.+..+.++.||.+ ......... -.| -.|++|. +.=.++.|++.. -.|++++.|++|.+||++...
T Consensus 138 ~iVAt~t~~~dv~Vfd~t--k~~s~~~~~~~~~Pdl~L~gH~----~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~ 211 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYT--KHPSKPKASGECRPDLRLKGHE----KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAES 211 (422)
T ss_pred cEEEecCCCCCEEEEEec--cCCCcccccccCCCceEEEeec----ccccccccccccceeEeeccCCCcEEEEeccccc
Confidence 445555777789999983 332211110 000 0144442 234568898865 378899999999999996421
Q ss_pred -----E---EEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 109 -----T---EVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 109 -----~---e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+ .....|++.|..++|.|- ..++++++.|+.+.||+ |.| .....+.. .+|+..+.+
T Consensus 212 ~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---~~~~~~~~-----------~ah~~~vn~ 277 (422)
T KOG0264|consen 212 KEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---TSKPSHSV-----------KAHSAEVNC 277 (422)
T ss_pred cCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC---CCCCcccc-----------cccCCceeE
Confidence 1 244557899999999996 56789999999999986 443 22222222 267788999
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e 256 (1196)
++|+|=+.++.+++| .|++|++||+++- +.+.++++|...|..|.|||.-. .+||++.| ..+.+|+
T Consensus 278 ~~fnp~~~~ilAT~S------~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D------~rl~vWD 345 (422)
T KOG0264|consen 278 VAFNPFNEFILATGS------ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD------RRLNVWD 345 (422)
T ss_pred EEeCCCCCceEEecc------CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC------CcEEEEe
Confidence 999997765542455 4799999998643 46778899999999999999876 56777765 4688998
Q ss_pred CC--CeeEE---------E--EEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecC
Q 000992 257 RN--GLERS---------S--FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 257 ~n--Gl~~~---------~--f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+ |.... + | +++.|...|..++|+|+-. .+|+++.|. ++|||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF-~HgGH~~kV~DfsWnp~ePW~I~SvaeDN---~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLF-IHGGHTAKVSDFSWNPNEPWTIASVAEDN---ILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeE-EecCcccccccccCCCCCCeEEEEecCCc---eEEEeeccc
Confidence 54 22110 1 2 2234567899999999876 678888887 999999875
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.5e-13 Score=156.71 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=197.1
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC--CeEEE---eee---ecCcEEEEEECC-CCCEEEEEeCCceEEEEeccC
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG--NATEV---VGR---VEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~--~~~e~---vg~---~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~ 147 (1196)
..++|+-.++-.+|+.|+.. ..+||..+. ....+ .+. ..-.+..+.|+. +.++||+++..|.|.+|+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln- 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN- 118 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC-
Confidence 46677777888888888744 566766543 11111 121 112356688863 56899999999999998743
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
.++.+..+ +-|..|.-.+.++.|++--.++. +++ ..|++||+||.....-..++.+-...+..
T Consensus 119 k~~rnk~l-----------~~f~EH~Rs~~~ldfh~tep~il-iSG-----SQDg~vK~~DlR~~~S~~t~~~nSESiRD 181 (839)
T KOG0269|consen 119 KSIRNKLL-----------TVFNEHERSANKLDFHSTEPNIL-ISG-----SQDGTVKCWDLRSKKSKSTFRSNSESIRD 181 (839)
T ss_pred ccccchhh-----------hHhhhhccceeeeeeccCCccEE-Eec-----CCCceEEEEeeecccccccccccchhhhc
Confidence 11222221 23556777889999998777666 454 36899999998777777777666677899
Q ss_pred EEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 228 LEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 228 lawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+.|+|. |+.+|++.+. +.+++||.--...-++.+. .|.+.|..+.|+|++.+||+|+.|+ .|+||++..
T Consensus 182 V~fsp~~~~~F~s~~ds------G~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~ 251 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDS------GYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTD 251 (839)
T ss_pred eeeccCCCceEEEecCC------ceEEEeeccCchhHHHHhh-cccCceEEEeecCCCceeeecCCCc---cEEEEeccC
Confidence 999994 7788887663 5799998532222222232 3467899999999999999999999 999999986
Q ss_pred CEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 307 NHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
.....+..+. ...+ ..|+|-|+.+..|++.. .++...|.+|+++.--+|--+.
T Consensus 252 ~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcs-----------------------mv~dtsV~VWDvrRPYIP~~t~- 305 (839)
T KOG0269|consen 252 SRAKPKHTIN--TIAPVGRVKWRPARSYHLATCS-----------------------MVVDTSVHVWDVRRPYIPYATF- 305 (839)
T ss_pred CCccceeEEe--ecceeeeeeeccCccchhhhhh-----------------------ccccceEEEEeeccccccceee-
Confidence 5433333332 2334 77999999886544432 2244467888888766654332
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.+|.+.|..++|-.... ..|-+++.||+|..-.+.
T Consensus 306 --~eH~~~vt~i~W~~~d~-~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 306 --LEHTDSVTGIAWDSGDR-INLWSCSKDGTVLQHLFK 340 (839)
T ss_pred --eccCccccceeccCCCc-eeeEeecCccHHHHhhhh
Confidence 36889999999977331 567888888887654443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=139.64 Aligned_cols=242 Identities=13% Similarity=0.128 Sum_probs=176.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.++++.|-|-..+|.++|.|+.+..+|.+ |.. .+-. ++- |.....|.++.|+|.|++|++|+.--+++|
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfs---K~s-aKrA-----~K~--~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFS---KTS-AKRA-----FKV--FQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecc---cHH-HHHH-----HHH--hhccceeeeEeecCCCceEEEecCCCceeE
Confidence 67888999999999999999999999974 221 0100 111 222357999999999999999999999999
Q ss_pred EECCCCeEEE----eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC-CCe
Q 000992 102 HSVDGNATEV----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF-SFK 176 (1196)
Q Consensus 102 w~~~~~~~e~----vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~-~~v 176 (1196)
||.+|-++-. -..|.++|+++.+||.|++-+++|.||.|++| |-++..++.+.. .+|+ ..|
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~Iklw----DGVS~rCv~t~~----------~AH~gsev 308 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLW----DGVSNRCVRTIG----------NAHGGSEV 308 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEee----ccccHHHHHHHH----------hhcCCcee
Confidence 9999866532 23468899999999999999999999999775 556655554433 0222 357
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CCCc---eeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFM---GAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~---v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
++.-|.-||+|+. +|+ .|.++++|...+|..+....+ ..|. -..-.|+-.-.++...... ...
T Consensus 309 cSa~Ftkn~kyiL-sSG------~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa-----s~s 376 (430)
T KOG0640|consen 309 CSAVFTKNGKYIL-SSG------KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA-----SNS 376 (430)
T ss_pred eeEEEccCCeEEe-ecC------CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc-----cCc
Confidence 8999999999999 454 478999999999998876543 2221 1333455555555443322 245
Q ss_pred EEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 252 IVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 252 V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+.-|+ ||+.+..- +...+.+.|..+.-||.+....+++.|. .+++|...
T Consensus 377 lcsWdaRtadr~~l--~slgHn~a~R~i~HSP~~p~FmTcsdD~---raRFWyrr 426 (430)
T KOG0640|consen 377 LCSWDARTADRVAL--LSLGHNGAVRWIVHSPVEPAFMTCSDDF---RARFWYRR 426 (430)
T ss_pred eeeccccchhhhhh--cccCCCCCceEEEeCCCCCceeeecccc---eeeeeeec
Confidence 66677 66655442 2334567899999999999999999998 89999754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-12 Score=146.70 Aligned_cols=279 Identities=20% Similarity=0.225 Sum_probs=185.1
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC--eEEEEecCC-
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA--NIAAVYDRK- 244 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~--~IAs~s~d~- 244 (1196)
-|++|.+.|.+|+-.|-|++|| +|+ .|++||||...+|.++.+.. .++.|.+|+|+|.++ +||++-...
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wla-sGs------dDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLA-SGS------DDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eEeccCCeEEEEEecCCcceee-ecC------CCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCce
Confidence 4569999999999999999999 676 57999999999999999887 677899999999987 355442211
Q ss_pred ---------------C----------CCCCCeEEEEeCCCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 245 ---------------S----------ENKCPSIVFYERNGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 245 ---------------~----------~~~~~~V~~~e~nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
+ ......|+.|.+..+..++ ..+...+...|.+|.|.-+|.+||+...++...
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 0 1113456677664222111 122223445799999999999999999887555
Q ss_pred eEEEEEecCCEEEEEEEEEEecCC--cEEEEEccCCCceEEEEecCCcEEEEEEE---------------Eeee--cCCC
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWTLDGQITTYNFI---------------WTTA--VMEN 358 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~---------------~~~~--~~d~ 358 (1196)
.|-|.+++... .| ..|.... +..+.|||..+. |.+.++ ..+.+|++. -..+ +.+.
T Consensus 547 ~VliHQLSK~~---sQ-~PF~kskG~vq~v~FHPs~p~-lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 547 SVLIHQLSKRK---SQ-SPFRKSKGLVQRVKFHPSKPY-LFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred eEEEEeccccc---cc-CchhhcCCceeEEEecCCCce-EEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCC
Confidence 78887776532 12 3342222 278999999886 667665 567777653 1222 4344
Q ss_pred eeEEEEcCCEEEEeeccccCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC-c--------c
Q 000992 359 STALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD-M--------L 428 (1196)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~-~--------~ 428 (1196)
.+++..-.+++.+.++....-|= +++. |...|.+|+|++.- .++|+++.||++.++--.--. . +
T Consensus 621 nli~gs~d~k~~WfDldlsskPy----k~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl 694 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPY----KTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL 694 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchh----HHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEee
Confidence 45555555566666766543321 2343 67889999999998 899999999999999642100 0 1
Q ss_pred ccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
..+.||.. .....|.+..|+|..-.|.+++.+ +++.+|
T Consensus 695 K~L~gH~~--------~~~~gVLd~~wHP~qpWLfsAGAd--~tirlf 732 (733)
T KOG0650|consen 695 KRLRGHEK--------TNDLGVLDTIWHPRQPWLFSAGAD--GTIRLF 732 (733)
T ss_pred eeccCcee--------ecccceEeecccCCCceEEecCCC--ceEEee
Confidence 11222211 111268888999988777776554 455554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=146.82 Aligned_cols=276 Identities=14% Similarity=0.138 Sum_probs=190.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-------eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~ 147 (1196)
+.-|.++.+|...+.+.+++ .|.|++||+... .+.+... ++.|++...+|||++|.+|+.-.+|.||+
T Consensus 419 GEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~r-dnyiRSckL~pdgrtLivGGeastlsiWD--- 493 (705)
T KOG0639|consen 419 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNR-DNYIRSCKLLPDGRTLIVGGEASTLSIWD--- 493 (705)
T ss_pred CcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCc-ccceeeeEecCCCceEEeccccceeeeee---
Confidence 44577799999999988776 678999998641 2334443 67899999999999999999999998865
Q ss_pred ceeeeee-cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 148 DLLYENP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 148 d~~~~~~-l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
..+... +..+..+ ..-....++-|||.+..-++. .|+.|+|||..+-.+...+.+|.....
T Consensus 494 -LAapTprikaelts----------sapaCyALa~spDakvcFscc-------sdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 494 -LAAPTPRIKAELTS----------SAPACYALAISPDAKVCFSCC-------SDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred -ccCCCcchhhhcCC----------cchhhhhhhcCCccceeeeec-------cCCcEEEEEcccceeeecccCCCCCce
Confidence 322211 1100000 001235688999999654232 368999999988888999999999999
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|..|+||..|=+|+-| ++|+-|+. .|....+.. ....|.+|..+|.++.||+|...+ .|.+-.+.
T Consensus 556 cIdis~dGtklWTGGlD------ntvRcWDlregrqlqqhd----F~SQIfSLg~cP~~dWlavGMens---~vevlh~s 622 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLD------NTVRCWDLREGRQLQQHD----FSSQIFSLGYCPTGDWLAVGMENS---NVEVLHTS 622 (705)
T ss_pred eEEecCCCceeecCCCc------cceeehhhhhhhhhhhhh----hhhhheecccCCCccceeeecccC---cEEEEecC
Confidence 99999999999999886 46999993 343222111 135699999999999999999998 67777776
Q ss_pred CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
..+-| .+..+..-+.++.|.+-|.. .+.+ | -++-| ..|-.|-..+.
T Consensus 623 kp~ky---qlhlheScVLSlKFa~cGkw--fvSt--G----------------------kDnlL-----nawrtPyGasi 668 (705)
T KOG0639|consen 623 KPEKY---QLHLHESCVLSLKFAYCGKW--FVST--G----------------------KDNLL-----NAWRTPYGASI 668 (705)
T ss_pred Cccce---eecccccEEEEEEecccCce--eeec--C----------------------chhhh-----hhccCccccce
Confidence 54422 33332212267777776543 1111 1 11111 12222333334
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
++..-.++|.+...|.|. +++++++.|..-.+|.+
T Consensus 669 FqskE~SsVlsCDIS~dd--kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSKESSSVLSCDISFDD--KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccccCcceeeeeccCc--eEEEecCCCcceEEEEE
Confidence 555566789999999998 89999999988888764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-12 Score=151.40 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=135.9
Q ss_pred CEEEEEEccCCCEEEE---EECCC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccCcee
Q 000992 77 SITAFDYLMEKEALIV---GTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLL 150 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~---as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~ 150 (1196)
...+=.|||||+.+++ ...+| .|.+.++++++...+....+.....+|||||+.||..+. +|.-.+|...|+.-
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 3456689999987543 33343 577789988877666666777788999999999998864 33222222223221
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~sla 229 (1196)
..... ....++. +........+|||||++||+++..+ +...|.+++.. .|..........+.+...+
T Consensus 266 ~g~~g----~~~~lt~----~~~~~~~~p~wSPDG~~Laf~s~~~----g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 266 TGAIG----KPRRLLN----EAFGTQGNPSFSPDGTRLVFVSNKD----GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPA 333 (428)
T ss_pred cCCCC----cceEeec----CCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECcccccceEEeccCCCCcccee
Confidence 10000 0000100 0112235689999999999443221 22345555542 1222222222334557889
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|||||+.||..+...+ ...|.+|+..+..... +.. ....+...+|||||+.|+....+.....|.+|++.+...
T Consensus 334 wSPDG~~Laf~~~~~g---~~~I~v~dl~~g~~~~--Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 334 WSPDGKKIAFCSVIKG---VRQICVYDLATGRDYQ--LTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred ECCCCCEEEEEEcCCC---CcEEEEEECCCCCeEE--ccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 9999999998876432 4578899976543332 221 123567899999999998776654344688888876543
Q ss_pred EEEEEEEEecCCcEEEEEccC
Q 000992 310 YLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
..+...........|+|-
T Consensus 408 ---~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 408 ---RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ---EEeecCCCcccCceecCC
Confidence 122211111245678774
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=155.34 Aligned_cols=281 Identities=12% Similarity=0.140 Sum_probs=181.3
Q ss_pred eeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCCCEEEEEECCCcEE
Q 000992 23 LQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLLL 100 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-pd~~~La~as~dG~I~ 100 (1196)
.++++..++-..|.++.- -..+|..+.+ .....+.+. .++-+-. .-...+|.|. -+.+.||+++.+|.|.
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~--~~~~~~~~~-----~k~kqn~-~~S~~DVkW~~~~~NlIAT~s~nG~i~ 113 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPN--DFSEKCNHR-----FKTKQNK-FYSAADVKWGQLYSNLIATCSTNGVIS 113 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcc--cCCcceeee-----cccccce-eeehhhcccccchhhhheeecCCCcEE
Confidence 345555566555555533 3357777763 333223322 1110000 1235566775 3568999999999999
Q ss_pred EEECCC----CeEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCC
Q 000992 101 LHSVDG----NATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 101 lw~~~~----~~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+||+.- ..+.....|+..|.++.|++-. .+|++||.||+|++|+ |.-+... .|.+...
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~----------------t~~~nSE 177 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS----------------TFRSNSE 177 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc----------------cccccch
Confidence 999864 2334666789999999998864 5788999999999876 2211111 2334456
Q ss_pred CeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 175 FKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 175 ~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.|..|.|+| +|.+|| +.. ..|.++.||.. ..++...+..|.|.|.++.|+|++.+||+|++|+ .|
T Consensus 178 SiRDV~fsp~~~~~F~-s~~------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK------~v 244 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFA-SIH------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK------MV 244 (839)
T ss_pred hhhceeeccCCCceEE-Eec------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc------cE
Confidence 788999997 567787 343 35899999974 3445555678999999999999999999999975 69
Q ss_pred EEEeCCCeeEEE-EEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEE-EEEEecCCcEEEEEcc
Q 000992 253 VFYERNGLERSS-FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKY-EIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 253 ~~~e~nGl~~~~-f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq-~l~~~~~~~~~v~Wsp 329 (1196)
++|+..+-+-+. .++. ....|..|.|-|+-+ .||+++.-. ...|.+||+.-. |+.. .+.-|.+..+.+.|..
T Consensus 245 kiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv~-dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 245 KIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMVV-DTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred EEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhccc-cceEEEEeeccc--cccceeeeccCccccceeccC
Confidence 999976533322 2222 235689999999876 466655322 237999998742 3322 3333333337788987
Q ss_pred CCCceEEEEecCCcEE
Q 000992 330 TKPLQLICWTLDGQIT 345 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~ 345 (1196)
.....|...+.||.+.
T Consensus 320 ~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVL 335 (839)
T ss_pred CCceeeEeecCccHHH
Confidence 5554455555566543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-12 Score=144.72 Aligned_cols=209 Identities=15% Similarity=0.050 Sum_probs=150.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++-+|+|.+|+.++..|+|.+|.+.+|.+- +...|-..|+|+.||-||..+.++|.||-|.+|.... .+...
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-LVSAD 159 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-ecccc
Confidence 368999999999999999889999999999998764 5667788999999999999999999999999985321 11100
Q ss_pred ecccccCccccccCccccCCCCeEEEEE--ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
.-+ ..++ .-.|..|.-.|+.+-- .|-..++. ++| .|+++|+||...|.++.+.. .+..+.+++..
T Consensus 160 ~~~---~~~p--~~~f~~HtlsITDl~ig~Gg~~~rl~-TaS------~D~t~k~wdlS~g~LLlti~-fp~si~av~lD 226 (476)
T KOG0646|consen 160 NDH---SVKP--LHIFSDHTLSITDLQIGSGGTNARLY-TAS------EDRTIKLWDLSLGVLLLTIT-FPSSIKAVALD 226 (476)
T ss_pred cCC---Cccc--eeeeccCcceeEEEEecCCCccceEE-Eec------CCceEEEEEeccceeeEEEe-cCCcceeEEEc
Confidence 000 0011 1234556666665544 43334666 354 57999999998899887764 45567999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCe---eE----EEEE-----ec--cCCCC--cEEEEEEccCCCeeEEEEccCC
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGL---ER----SSFD-----IN--EQIDS--TVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl---~~----~~f~-----l~--~~~~~--~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
|.+..+-.|+.++ .|-+...+++ +. +.+. ++ ..+.+ .|..|+.|-||++|++|+.|+
T Consensus 227 pae~~~yiGt~~G------~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 227 PAERVVYIGTEEG------KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred ccccEEEecCCcc------eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-
Confidence 9999999988764 3433322211 11 1111 11 12233 799999999999999999999
Q ss_pred cceEEEEEecC
Q 000992 296 YDSVKICFFSN 306 (1196)
Q Consensus 296 ~~~V~lW~~~n 306 (1196)
.|.+|+...
T Consensus 300 --~VcvWdi~S 308 (476)
T KOG0646|consen 300 --KVCVWDIYS 308 (476)
T ss_pred --CEEEEecch
Confidence 899999875
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.7e-12 Score=152.75 Aligned_cols=219 Identities=15% Similarity=0.168 Sum_probs=142.8
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG 97 (1196)
.+...+|.+|++.|++++. ..+|+.|++ ..++.+ . +..+ .+...+.+|+|||+.|+.+ +.+|
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl--~~g~~~-~-------l~~~----~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDL--ATGQRE-L-------VASF----RGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEEC--CCCCEE-E-------eccC----CCCccCceECCCCCEEEEEEeCCC
Confidence 5677899999999999874 346999998 444331 1 2111 1234578999999988754 5566
Q ss_pred --cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-Cce--EEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~t--V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+|.+||..++.+..+..+.......+|||||+.|++++. ++. |.+++....... .+. +.+
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt------------~~g- 335 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--RLT------------FQG- 335 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Eee------------cCC-
Confidence 599999998877655444444568899999999998875 344 433332111111 111 111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.....++|||||+++| ..+.+ .+...|.+||..+|+......+ ....+.+|+|||++|+.++.+.. ...+
T Consensus 336 -~~~~~~~~SpDG~~Ia-~~~~~---~~~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~g---~~~L 405 (433)
T PRK04922 336 -NYNARASVSPDGKKIA-MVHGS---GGQYRIAVMDLSTGSVRTLTPG--SLDESPSFAPNGSMVLYATREGG---RGVL 405 (433)
T ss_pred -CCccCEEECCCCCEEE-EEECC---CCceeEEEEECCCCCeEECCCC--CCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 1224689999999999 44322 1345799999977776643332 24567899999999988876532 4567
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
..++.+|..... +..+ .+.+...+|||
T Consensus 406 ~~~~~~g~~~~~--l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 406 AAVSTDGRVRQR--LVSA-DGEVREPAWSP 432 (433)
T ss_pred EEEECCCCceEE--cccC-CCCCCCCccCC
Confidence 778887754332 3322 34577889997
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-12 Score=134.49 Aligned_cols=118 Identities=15% Similarity=0.233 Sum_probs=85.9
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
+.|..++|+|+|+.||.+.+ ..++.|++||. .++...++. ......|.|||+|++||.++.+.. ...|.
T Consensus 60 ~~I~~~~WsP~g~~favi~g-----~~~~~v~lyd~-~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~---~G~l~ 128 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYG-----SMPAKVTLYDV-KGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNL---NGDLE 128 (194)
T ss_pred CceEEEEECcCCCEEEEEEc-----cCCcccEEEcC-cccEeEeec--CCCceEEEECCCCCEEEEEEccCC---CcEEE
Confidence 35899999999999983333 13469999999 688777764 345688999999999999986432 46799
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC---CcceEEEEEecC
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE---EYDSVKICFFSN 306 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~---~~~~V~lW~~~n 306 (1196)
||+.+... .+.......+..++|||||++||++.... -...++||+...
T Consensus 129 ~wd~~~~~----~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 129 FWDVRKKK----KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEECCCCE----EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 99976321 11111223578999999999999988641 122689998865
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-13 Score=159.74 Aligned_cols=216 Identities=14% Similarity=0.196 Sum_probs=165.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
.|..+..-..++.++.|+.|-.+-||....-- +-.+-.|+++|.++.|++++.+||.|+.+|+|++|+ ......+
T Consensus 30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wD----leeAk~v 105 (825)
T KOG0267|consen 30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWD----LEEAKIV 105 (825)
T ss_pred hhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeee----hhhhhhh
Confidence 45555555667888888888888788865311 112344699999999999999999999999998864 3344444
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
+++. +|-..+.++.|+|-|.|+| .++ .|+-+++||..---+.++..+|.+.+..+.|+|+|+
T Consensus 106 rtLt-----------gh~~~~~sv~f~P~~~~~a-~gS------tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr 167 (825)
T KOG0267|consen 106 RTLT-----------GHLLNITSVDFHPYGEFFA-SGS------TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR 167 (825)
T ss_pred hhhh-----------ccccCcceeeeccceEEec-ccc------ccccceehhhhccCceeeecCCcceeEEEeecCCCc
Confidence 4433 5666789999999999999 566 368899999865668888888999999999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
++|+++.| ..|++|+. .|....+|. .+++.|.++.|.|-.-+||.|+.|+ +|++|++.+..
T Consensus 168 ~v~~g~ed------~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~---tv~f~dletfe------ 229 (825)
T KOG0267|consen 168 WVASGGED------NTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDR---TVRFWDLETFE------ 229 (825)
T ss_pred eeeccCCc------ceeeeecccccccccccc---cccccccccccCchhhhhccCCCCc---eeeeeccceeE------
Confidence 99999885 57999995 455544443 2467899999999999999999999 99999998642
Q ss_pred EEEec----CCcEEEEEccCCC
Q 000992 315 IRYLR----RDGIRFMWHPTKP 332 (1196)
Q Consensus 315 l~~~~----~~~~~v~Wsp~~~ 332 (1196)
+.... .++.+..|+|++.
T Consensus 230 ~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 230 VISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred EeeccCCccCCceeeeecCCce
Confidence 22111 2237788999875
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=137.27 Aligned_cols=284 Identities=12% Similarity=0.115 Sum_probs=172.3
Q ss_pred ceeEEeeecCCC-EEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQN-RLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+..+.|-..+. .+.++..|+.|..|.++. ..+.+..+|. .-+.|..| ...|+.|.|+|+|+.||+|+++|+|
T Consensus 15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~-y~s~Ls~H----~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVE-YLSSLSRH----TRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEE-EeecccCC----cceeEEEEEcCCcCeeeecCCCceE
Confidence 333333433333 788888899999999851 1111112222 11123333 4689999999999999999999999
Q ss_pred EEEECC--------C-----C---eE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCc
Q 000992 100 LLHSVD--------G-----N---AT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEG 161 (1196)
Q Consensus 100 ~lw~~~--------~-----~---~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~ 161 (1196)
.||-.. + . .+ ..++.|...|..++||||+..|++++.|+++++|+ ..|.... ..+
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~-----~~~-- 162 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA-----ILD-- 162 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe-----ecc--
Confidence 999875 3 1 11 25566788999999999999999999999998765 3343332 222
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC---------------------CCcEEEEecc
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD---------------------SGTLQASSEL 220 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~---------------------~G~l~~~~e~ 220 (1196)
+|...+.-++|-|-++|+++ -+. ||..++++.. +|...+.+
T Consensus 163 ---------dh~~yvqgvawDpl~qyv~s-~s~------dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf-- 224 (434)
T KOG1009|consen 163 ---------DHEHYVQGVAWDPLNQYVAS-KSS------DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF-- 224 (434)
T ss_pred ---------ccccccceeecchhhhhhhh-hcc------CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee--
Confidence 45667789999999999994 443 3333333221 11111111
Q ss_pred CCC----ceeEEEEcCCCCeEEEEecCC--CC-CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-----------
Q 000992 221 KAF----MGAVLEWMPSGANIAAVYDRK--SE-NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC----------- 282 (1196)
Q Consensus 221 ~~~----~v~slawsPdG~~IAs~s~d~--~~-~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp----------- 282 (1196)
|+. .-.-++|+|||.++.+..+-- ++ ...++.-.|.+.-+.+--+.|+.+. ..+..+.++|
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~-k~~lavr~~pVy~elrp~~~~ 303 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK-KPALAVRFSPVYYELRPLSSE 303 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC-cceEEEEeeeeEEEecccccc
Confidence 111 126789999999998765421 10 1123333455443333333333221 1234444443
Q ss_pred -------CCCeeEEEEccCCcceEEEEEecCCEE-EEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 283 -------MSDLLAAVVRFEEYDSVKICFFSNNHW-YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 283 -------Dg~~LAs~~~d~~~~~V~lW~~~n~~w-ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
-+-+.|+++.+. |.+++++...- +....|.++ ..+.++|+++|.. |.+.+.||-
T Consensus 304 ~~~~~lpyrlvfaiAt~~s----vyvydtq~~~P~~~v~nihy~--~iTDiaws~dg~~-l~vSS~DGy 365 (434)
T KOG1009|consen 304 KFLFVLPYRLVFAIATKNS----VYVYDTQTLEPLAVVDNIHYS--AITDIAWSDDGSV-LLVSSTDGF 365 (434)
T ss_pred ccccccccceEEEEeecce----EEEeccccccceEEEeeeeee--eecceeecCCCcE-EEEeccCCc
Confidence 445788888886 99999886332 222344442 2377999999876 555566774
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7e-12 Score=150.89 Aligned_cols=221 Identities=16% Similarity=0.138 Sum_probs=140.8
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG 97 (1196)
.+...+|.+|++.|++++.. ..|+.||+ .+++.. .+ ... .+.+.+.+|||||+.|+. .+.+|
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl--~~g~~~-~l-------~~~----~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDL--ATGRRR-VV-------ANF----KGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEEC--CCCCEE-Ee-------ecC----CCCccceEECCCCCEEEEEEccCC
Confidence 67788999999999988753 36999999 555431 11 111 134668899999999985 46677
Q ss_pred cEEEE--ECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLH--SVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw--~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
...|| |..++....+..+.+.+...+|||||+.|+.++. ++...+|..+-+.-....+. |.+ .
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt------------~~g--~ 328 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT------------FTG--S 328 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe------------cCC--C
Confidence 76665 5666666555444455677899999999998875 34555543221100000110 111 1
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.....+|||||+++|. .+.+ .+...|.+||..+|+....... +....++|+|||+.|+.++.+.+ ...+..
T Consensus 329 ~~~~~~~SpDG~~Ia~-~s~~---~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g---~~~l~~ 399 (427)
T PRK02889 329 YNTSPRISPDGKLLAY-ISRV---GGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGG---RSVLAA 399 (427)
T ss_pred CcCceEECCCCCEEEE-EEcc---CCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCC---CEEEEE
Confidence 2246899999999994 4322 1235799999977776544332 23468899999999999887543 334555
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
.+.+|.... .++.+ .+.+...+|||
T Consensus 400 ~~~~g~~~~--~l~~~-~g~~~~p~wsp 424 (427)
T PRK02889 400 VSSDGRIKQ--RLSVQ-GGDVREPSWGP 424 (427)
T ss_pred EECCCCceE--EeecC-CCCCCCCccCC
Confidence 566675433 23322 34577889998
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.8e-11 Score=145.98 Aligned_cols=203 Identities=13% Similarity=0.091 Sum_probs=130.7
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~--tV~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+..+.+ ..|.+|+.++++.+.+....+.+.+.+|||||+.||.. +.++ .|.+|+.....
T Consensus 199 ~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 199 EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 468899999999999877643 36888999988776555445566789999999999865 3444 35554432211
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+.......+|+|||+.++ .++.. .+...|.+|+..+|+....... .......+
T Consensus 279 ~~--~lt--------------~~~~~~~~~~~spDg~~i~-f~s~~---~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~ 337 (430)
T PRK00178 279 LS--RVT--------------NHPAIDTEPFWGKDGRTLY-FTSDR---GGKPQIYKVNVNGGRAERVTFV-GNYNARPR 337 (430)
T ss_pred eE--Ecc--------------cCCCCcCCeEECCCCCEEE-EEECC---CCCceEEEEECCCCCEEEeecC-CCCccceE
Confidence 11 111 1112235689999999988 44421 1345788889877776544321 12235679
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|||||+.|+..+...+ ...|.+++..+..... +... ......+|||||+.|+..+.+++...+.+++...
T Consensus 338 ~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~--lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 338 LSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRI--LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ECCCCCEEEEEEccCC---ceEEEEEECCCCCEEE--ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 9999999998876432 3467788865433222 2211 1223568999999999988765434566666643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-11 Score=150.06 Aligned_cols=223 Identities=13% Similarity=0.085 Sum_probs=134.8
Q ss_pred CCEEEEEEccCCCEEEEEEC-CC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCce--EEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTS-SG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQ--ILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~-dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~t--V~l~~~~~d~ 149 (1196)
..+.+..|||||+.|+.++. +| .|.+||+.+++...+....+...+.+|||||+.||.+ +.++. |.+|+.....
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 35778999999999998754 33 5888999887765444445556688999999999875 45565 4444322111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+.......+|+|||+++++ .+.. .+...|.++|..+|+...... ........+
T Consensus 298 ~~--~lt--------------~~~~~~~~p~wSpDG~~I~f-~s~~---~g~~~Iy~~dl~~g~~~~Lt~-~g~~~~~~~ 356 (448)
T PRK04792 298 LT--RIT--------------RHRAIDTEPSWHPDGKSLIF-TSER---GGKPQIYRVNLASGKVSRLTF-EGEQNLGGS 356 (448)
T ss_pred eE--ECc--------------cCCCCccceEECCCCCEEEE-EECC---CCCceEEEEECCCCCEEEEec-CCCCCcCee
Confidence 11 111 11123367899999999984 4321 134578888887777655431 112234579
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|+|||+.|+..+...+ ...|..++..+..... +... ....+.+|||||+.|+..+.++....+.+++... .+
T Consensus 357 ~SpDG~~l~~~~~~~g---~~~I~~~dl~~g~~~~--lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~~ 428 (448)
T PRK04792 357 ITPDGRSMIMVNRTNG---KFNIARQDLETGAMQV--LTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-RF 428 (448)
T ss_pred ECCCCCEEEEEEecCC---ceEEEEEECCCCCeEE--ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-Cc
Confidence 9999999998876432 3456556654432221 2211 1223568999999999888765434566666543 22
Q ss_pred EEEEEEEEecCCcEEEEEcc
Q 000992 310 YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp 329 (1196)
++.+..+........|+|
T Consensus 429 --~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 429 --KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --eEECcCCCCCcCCCccCC
Confidence 223322212224567776
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=140.17 Aligned_cols=297 Identities=16% Similarity=0.129 Sum_probs=188.3
Q ss_pred EEEEECCCcEEEEECCCC--eEEEeee-ecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeeeecccccCccccc
Q 000992 90 LIVGTSSGLLLLHSVDGN--ATEVVGR-VEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH 165 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~--~~e~vg~-~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs 165 (1196)
|-+++...+++|||.... .-+.+.+ -+.||.++.|+.... .+|+.++|..|.+|-+++. .-+++......+..
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd~-- 81 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGDN-- 81 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccch--
Confidence 445677778999998643 2222221 245799999998864 2344467888999987765 33333322220000
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
+ .-+.++++| .|++ +++ ..++|+|||....-++..+..|...|..+.++-.-.+||+++..
T Consensus 82 --~-----~Cv~~~s~S---~y~~-sgG------~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~g-- 142 (673)
T KOG4378|consen 82 --A-----FCVACASQS---LYEI-SGG------QSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDG-- 142 (673)
T ss_pred --H-----HHHhhhhcc---eeee-ccC------cCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccC--
Confidence 0 012344444 7887 454 35899999995444556678899999999999999999999874
Q ss_pred CCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeE-EEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-
Q 000992 246 ENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLA-AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG- 322 (1196)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA-s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~- 322 (1196)
.+|.+.. ..+++..+|... ....|.-|.+||-.+.|. +++.++ +|.|||+....-|... ...| ..+
T Consensus 143 ----Gdiiih~~~t~~~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G---~VtlwDv~g~sp~~~~-~~~H-sAP~ 211 (673)
T KOG4378|consen 143 ----GDIIIHGTKTKQKTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKG---AVTLWDVQGMSPIFHA-SEAH-SAPC 211 (673)
T ss_pred ----CcEEEEecccCccccceecC--CCCeEEEeecccccceeeEeeccCC---eEEEEeccCCCcccch-hhhc-cCCc
Confidence 4677776 456666666543 234678999999998655 566666 9999999864321100 0111 122
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecC
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSK 402 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspd 402 (1196)
..+.|+|-+...|+....|-.+..|+. +-. -+...+.-..+...|+|+++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~-------------------------~s~-----~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDI-------------------------RSQ-----ASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred CcceecCCccceEEEecccceEEEeec-------------------------ccc-----cccceeeecCCcceeeecCC
Confidence 557889988775555544444443332 110 01122334456789999999
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEE
Q 000992 403 SSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLL 462 (1196)
Q Consensus 403 g~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~ll 462 (1196)
| .+|++|++.|.|..||+-....+ ..+. ..|...|..++|-+..++|
T Consensus 262 G--~~L~aG~s~G~~i~YD~R~~k~P-------v~v~----sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 262 G--TYLCAGNSKGELIAYDMRSTKAP-------VAVR----SAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred c--eEEEeecCCceEEEEecccCCCC-------ceEe----eecccceeEEEeeecceee
Confidence 9 89999999999999998642221 1111 1244579999999887544
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=128.16 Aligned_cols=228 Identities=17% Similarity=0.130 Sum_probs=153.4
Q ss_pred eecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCccccc--cCc-cccCCCCeEEEEEcc-CCceE
Q 000992 114 RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH--EPE-LSSSFSFKSPISWRG-DGKYF 188 (1196)
Q Consensus 114 ~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs--~tq-f~~~~~~v~~isWsp-DG~~l 188 (1196)
.|.++|+++..-|- |+++.+|+.||.|.+|+..--.-++... . ..+++. ..| -.+|.-.|.++-|-| |--+|
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--l-i~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--L-IAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--c-eeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 35678888888774 8899999999999998632111011100 0 011111 000 014556788999998 44567
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC---CeEEEEecCCCCCCCCeEEEEeC-CCeeEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG---ANIAAVYDRKSENKCPSIVFYER-NGLERSS 264 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG---~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~ 264 (1196)
. +++. |.++||||.++-+....+. .++.|.+-+|||=. -+||+|.++ ..|++++. .|--..
T Consensus 118 t-ssSF------DhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~------~~VrLCDi~SGs~sH- 182 (397)
T KOG4283|consen 118 T-SSSF------DHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRD------VQVRLCDIASGSFSH- 182 (397)
T ss_pred e-cccc------cceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCC------CcEEEEeccCCccee-
Confidence 6 5663 6999999998877766665 56778899999954 489999886 46999995 332211
Q ss_pred EEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 265 FDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
+|.+ |.+.|.++.|||.++ +||+|+.|+ +|+|||+..- + + ++.+.....
T Consensus 183 -~LsG-Hr~~vlaV~Wsp~~e~vLatgsaDg---~irlWDiRra-------------s---------g--cf~~lD~hn- 232 (397)
T KOG4283|consen 183 -TLSG-HRDGVLAVEWSPSSEWVLATGSADG---AIRLWDIRRA-------------S---------G--CFRVLDQHN- 232 (397)
T ss_pred -eecc-ccCceEEEEeccCceeEEEecCCCc---eEEEEEeecc-------------c---------c--eeEEeeccc-
Confidence 3444 357899999999998 689999999 9999997631 0 0 122222110
Q ss_pred EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
++ -||.---...|.+.|+.++|+.|| ..+++.+.|..+++|+..
T Consensus 233 ----------------------~k------------~~p~~~~n~ah~gkvngla~tSd~--~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 233 ----------------------TK------------RPPILKTNTAHYGKVNGLAWTSDA--RYLASCGTDDRIRVWNME 276 (397)
T ss_pred ----------------------Cc------------cCccccccccccceeeeeeecccc--hhhhhccCccceEEeecc
Confidence 00 011111123478899999999999 899999999999999987
Q ss_pred CC
Q 000992 424 AP 425 (1196)
Q Consensus 424 ~~ 425 (1196)
.+
T Consensus 277 ~G 278 (397)
T KOG4283|consen 277 SG 278 (397)
T ss_pred cC
Confidence 54
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-11 Score=130.47 Aligned_cols=248 Identities=11% Similarity=0.053 Sum_probs=161.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.-.++-|.+-|+.|.+++.++.+..||. .+... .++ +..|- -.|.+++||+||+.|.++|.|..|++
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~--~T~~i-ar~------lsaH~----~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDF--DTFRI-ARM------LSAHV----RPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEc--cccch-hhh------hhccc----cceeEEEecCCCCEeeeecCCceeEE
Confidence 3456779999999999999999999999 33332 122 33442 36999999999999999999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC--C-ceEEEEeccCceeeeeeccccc---------------Cccc
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG--F-GQILVMTHDWDLLYENPLEELA---------------EGFD 163 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~--d-~tV~l~~~~~d~~~~~~l~~~~---------------~~~~ 163 (1196)
||+..|.+---=.++.+|+.+.|.|--...++++- . -+|...+ ++... .+..++ .++.
T Consensus 92 wDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s---~~~h~-~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS---DPKHS-VLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred EeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEec---CCcee-eccCCCccccccccccccccCCCCE
Confidence 99976654311235788999999987666666542 1 1222111 12211 111111 1122
Q ss_pred c-c------------cCc-----cccC-CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE----Eecc
Q 000992 164 V-H------------EPE-----LSSS-FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA----SSEL 220 (1196)
Q Consensus 164 V-s------------~tq-----f~~~-~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~----~~e~ 220 (1196)
| + +|+ |+-. ...|-+|-++-.|++|+ +.+ .||+||+|+..+ -... ..++
T Consensus 168 IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~li-iNt------sDRvIR~ye~~d-i~~~~r~~e~e~ 239 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLI-INT------SDRVIRTYEISD-IDDEGRDGEVEP 239 (405)
T ss_pred EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEE-Eec------CCceEEEEehhh-hcccCccCCcCh
Confidence 1 0 110 1111 14567889999999999 775 579999998731 1111 0010
Q ss_pred ---CCCce-----eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 221 ---KAFMG-----AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 221 ---~~~~v-----~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
....| .++.||-+|.+|..++.. .+.+-+||++ |.... .|.+.......++.|.|-..++|+-.
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~-----aHaLYIWE~~~GsLVK--ILhG~kgE~l~DV~whp~rp~i~si~ 312 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSAR-----AHALYIWEKSIGSLVK--ILHGTKGEELLDVNWHPVRPIIASIA 312 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEecccc-----ceeEEEEecCCcceee--eecCCchhheeecccccceeeeeecc
Confidence 00111 578899999999888754 4789999986 43333 34444334577899999999999985
Q ss_pred ccCCcceEEEEEec
Q 000992 292 RFEEYDSVKICFFS 305 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~ 305 (1196)
++ +|.+|...
T Consensus 313 sg----~v~iw~~~ 322 (405)
T KOG1273|consen 313 SG----VVYIWAVV 322 (405)
T ss_pred CC----ceEEEEee
Confidence 44 69999965
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=145.08 Aligned_cols=260 Identities=17% Similarity=0.190 Sum_probs=167.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEE-CCCCeEEEeeeecCcEEEEEE--------CCCCCEEEEEeCCceEEEEeccC
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHS-VDGNATEVVGRVEGGVRFISP--------SPDGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~-~~~~~~e~vg~~~~~I~~~aw--------SPDg~~LA~~s~d~tV~l~~~~~ 147 (1196)
.|.++.|+...+.+-+ ++|..+.+|+ ..+...++.--.++-|...-+ --..+.++++|.||.+.+.++..
T Consensus 16 ~vc~v~w~~~eei~~~-~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~ 94 (737)
T KOG1524|consen 16 KVCCVDWSSNEEIYFV-SDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSA 94 (737)
T ss_pred eEEeecccccceEEEe-ccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccc
Confidence 5678899988776655 4555666654 433221111000110100000 11235799999999999988876
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
.+-..+. +|...+.+-.|+|||.=|.| ++ +|+.||||++ +|-+.++.......+.+
T Consensus 95 rVE~sv~----------------AH~~A~~~gRW~~dGtgLlt-~G------EDG~iKiWSr-sGMLRStl~Q~~~~v~c 150 (737)
T KOG1524|consen 95 RVERSIS----------------AHAAAISSGRWSPDGAGLLT-AG------EDGVIKIWSR-SGMLRSTVVQNEESIRC 150 (737)
T ss_pred hhhhhhh----------------hhhhhhhhcccCCCCceeee-ec------CCceEEEEec-cchHHHHHhhcCceeEE
Confidence 6543332 34456788899999999984 44 5899999999 99999988777778999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++|-|+.+-|.-++.+. ..|+=...|-.. ...+ .|++-|.++.|||.+.++|+|++|- ..++||....
T Consensus 151 ~~W~p~S~~vl~c~g~h-----~~IKpL~~n~k~---i~Wk-AHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~ 218 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQGGH-----ISIKPLAANSKI---IRWR-AHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGA 218 (737)
T ss_pred EEECCCCCceEEecCCe-----EEEeecccccce---eEEe-ccCcEEEEeecCccccceeecCCce---eEEeecccCc
Confidence 99999999888876642 223222223211 1112 2457799999999999999999998 8999997642
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
.-|-. ..+....++++|.||.. ..+|+- ++++ |.. |
T Consensus 219 ~Lf~S---~~~ey~ITSva~npd~~--~~v~S~--------------------------nt~R---~~~-----p----- 254 (737)
T KOG1524|consen 219 NLFTS---AAEEYAITSVAFNPEKD--YLLWSY--------------------------NTAR---FSS-----P----- 254 (737)
T ss_pred ccccC---Chhccceeeeeeccccc--eeeeee--------------------------eeee---ecC-----C-----
Confidence 21110 01111238999999943 344431 0111 111 1
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 388 LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 388 l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
-.+.|..++||||| ..+|.+++.|.+.+--
T Consensus 255 --~~GSifnlsWS~DG--TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 255 --RVGSIFNLSWSADG--TQATCGTSTGQLIVAY 284 (737)
T ss_pred --CccceEEEEEcCCC--ceeeccccCceEEEee
Confidence 13578899999999 8999999999776543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=148.96 Aligned_cols=244 Identities=15% Similarity=0.168 Sum_probs=156.4
Q ss_pred ccCCCEEEE--EECCCcEEEEECCC-CeEE--E-eeee-cCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 84 LMEKEALIV--GTSSGLLLLHSVDG-NATE--V-VGRV-EGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 84 spd~~~La~--as~dG~I~lw~~~~-~~~e--~-vg~~-~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
..+.+..|+ ++..|.|-|++++. |++. . -|-+ ...|+.+.|.| |.+.||+++.||.|.+|-..-+-+.+...
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEM 667 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccC
Confidence 444555553 56689999999863 3332 1 1111 23599999999 78999999999999998533222222221
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.+ ++....|.+.|+++.|.|=.. .|| +++ .|-+|++||..++++...+.+|.+.|.++||||||
T Consensus 668 tP--------e~~lt~h~eKI~slRfHPLAadvLa-~as------yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 668 TP--------EKILTIHGEKITSLRFHPLAADVLA-VAS------YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDG 732 (1012)
T ss_pred Cc--------ceeeecccceEEEEEecchhhhHhh-hhh------ccceeeeeehhhhhhhheeccCcCceeEEEECCCC
Confidence 11 223336778899999999543 566 565 36899999999999999999999999999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCE--EEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNH--WYL 311 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~--wyl 311 (1196)
++||+.+.|+ +|++++........+.-+++...+--.|-|-.||.++.+.+-|.. ...|++|+..... -.-
T Consensus 733 r~~AtVcKDg------~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~ 806 (1012)
T KOG1445|consen 733 RRIATVCKDG------TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLY 806 (1012)
T ss_pred cceeeeecCc------eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcce
Confidence 9999999864 699998431111101111222233446899999999999887763 2268888866421 011
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF 349 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~ 349 (1196)
.+.+...+ +...-.+++|....+..+.+|..+.+|..
T Consensus 807 t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 807 TQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred eeeecccC-ccccccccCCCceEEEecCCCceEEEEEe
Confidence 22332211 22334567777654444443444444433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=159.32 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=176.8
Q ss_pred ceeEEeeecCCCE----EEEEeCCCcEEEEecccccccccce-eeccccccccccCCCCCCEEEEEEccCCC-EEEEEEC
Q 000992 22 ILQFSALDIEQNR----LFFASSANNIYSAQLSSFQNERASI-KTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~----l~~~s~~~~i~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~ 95 (1196)
....++|-.-++. |.-+.+|++|..|+.....+..... +.+ ...| .+.|.++.|.|.+. .||+|..
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~----~~~h----~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT----KSKH----TGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh----hccc----CCceeeeeccccCCceeeccCC
Confidence 6788888877665 6777889999999995321111111 111 1112 47899999999887 9999999
Q ss_pred CCcEEEEECCCCeEE-Eeee--ecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccc
Q 000992 96 SGLLLLHSVDGNATE-VVGR--VEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 96 dG~I~lw~~~~~~~e-~vg~--~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
||+|.|||+..-... ..|. ..+.|.+++|+-. ...||+++.+|.+.+|+.. -.++.....+.
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~------------- 204 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP------------- 204 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC-------------
Confidence 999999999752222 2322 3467999999875 6689999999999887622 12222222111
Q ss_pred cCCCCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCC
Q 000992 171 SSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSEN 247 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~ 247 (1196)
....+..|+|.||+.. ++ +++-| +..-.|++||.+ .-..++++++|...+-+++|+|.+ .+++|++.|
T Consensus 205 -~~~~~S~l~WhP~~aTql~-~As~d---d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD---- 275 (1049)
T KOG0307|consen 205 -GRMHCSVLAWHPDHATQLL-VASGD---DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKD---- 275 (1049)
T ss_pred -CccceeeeeeCCCCceeee-eecCC---CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCC----
Confidence 1123578999999974 34 45533 345689999943 445667778899999999999998 778888775
Q ss_pred CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEE
Q 000992 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
++|..|+.| |...++| +. ..++++.+.|+|--- ++|+++-|+ .|.|+.+.+..|+
T Consensus 276 --~~ii~wN~~tgEvl~~~--p~-~~nW~fdv~w~pr~P~~~A~asfdg---kI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 276 --NRIICWNPNTGEVLGEL--PA-QGNWCFDVQWCPRNPSVMAAASFDG---KISIYSLQGTDTD 332 (1049)
T ss_pred --CCeeEecCCCceEeeec--CC-CCcceeeeeecCCCcchhhhheecc---ceeeeeeecCCcc
Confidence 468899976 4444433 32 347899999999665 999999999 8999988775543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-11 Score=142.71 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=131.2
Q ss_pred CCEEEEEEccCCCEEEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCc--eEEEEeccCce
Q 000992 76 DSITAFDYLMEKEALIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFG--QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~--tV~l~~~~~d~ 149 (1196)
..+.+..|+|||+.|+.++.. .+|.+|+..+++...+..+.+.+.+++|||||+.|+... .++ .|.+|+.....
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 458889999999999987754 479999999886665555566778899999999888654 344 45555432111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
.. .+. .+.......+|+|||++|++ .+.. .+...|.+||..+|+...... .......++
T Consensus 270 ~~--~l~--------------~~~~~~~~~~~s~dg~~l~~-~s~~---~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~ 328 (417)
T TIGR02800 270 LT--RLT--------------NGPGIDTEPSWSPDGKSIAF-TSDR---GGSPQIYMMDADGGEVRRLTF-RGGYNASPS 328 (417)
T ss_pred EE--ECC--------------CCCCCCCCEEECCCCCEEEE-EECC---CCCceEEEEECCCCCEEEeec-CCCCccCeE
Confidence 11 111 11122346799999999883 4322 133578889986676554432 334457889
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
|+|+|++|+.+..+.+ ...|.+|+.++.... .+.. .......+|||||+.|+..+.++....+.+.+.
T Consensus 329 ~spdg~~i~~~~~~~~---~~~i~~~d~~~~~~~--~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 329 WSPDGDLIAFVHREGG---GFNIAVMDLDGGGER--VLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ECCCCCEEEEEEccCC---ceEEEEEeCCCCCeE--EccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 9999999999887532 456888886553222 1221 123456799999999999888763333444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=128.86 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=170.2
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
+|.++|+.++=-.--..++ .++ .|.+-+||..++|.++.+..+|.|.+++|.|+|+|.++++++.|.+
T Consensus 146 GHkDGiW~Vaa~~tqpi~g-tAS------ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t----- 213 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICG-TAS------ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET----- 213 (481)
T ss_pred ccccceeeehhhcCCccee-ecc------cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc-----
Confidence 7888999988655444555 344 4689999999999999999999999999999999999999998743
Q ss_pred eEEEEe-------------------------------C------CCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 251 SIVFYE-------------------------------R------NGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 251 ~V~~~e-------------------------------~------nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
-.+|. + +|..... ..|. .+.+.|....|=.-|+.+.+++
T Consensus 214 -aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt-gH~~vV~a~dWL~gg~Q~vTaS 291 (481)
T KOG0300|consen 214 -AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT-GHRAVVSACDWLAGGQQMVTAS 291 (481)
T ss_pred -hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee-ccccceEehhhhcCcceeeeee
Confidence 22221 0 0100000 0111 2345688889999999999999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEe---ee--------------
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWT---TA-------------- 354 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~---~~-------------- 354 (1196)
.|+ +--|||+.... +.+.+..|..+-+.+.=||...+ +...+.|-++..++|.-. ++
T Consensus 292 WDR---TAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrL-VvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF 365 (481)
T KOG0300|consen 292 WDR---TANLWDVETGE--VVNILTGHDSELTHCSTHPTQRL-VVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVF 365 (481)
T ss_pred ccc---cceeeeeccCc--eeccccCcchhccccccCCcceE-EEEeccCceeEeccchhhcceeeeecccccceeEEEE
Confidence 999 99999998764 23444443322244444554322 122222333332332100 00
Q ss_pred cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCC
Q 000992 355 VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGT 434 (1196)
Q Consensus 355 ~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~ 434 (1196)
.-|..+|...|+.++++|+++ |+-.|+. ++..+++++-|+.|..+ .++|.--.+..|+|||+++.... .++..
T Consensus 366 ~~dd~vVSgSDDrTvKvWdLr--NMRsplA--TIRtdS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~Rla-RlPrt 438 (481)
T KOG0300|consen 366 NTDDRVVSGSDDRTVKVWDLR--NMRSPLA--TIRTDSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLA-RLPRT 438 (481)
T ss_pred ecCCceeecCCCceEEEeeec--cccCcce--eeecCCccceeEeecCC--ceEEeccCCceEEEEecCCCccc-cCCcc
Confidence 124567777899999999997 5556664 57789999999999988 79999988889999999863211 22211
Q ss_pred ceeeeeecccccCCcEEEEEEecCCeE
Q 000992 435 EFVVEACISETAFGSVIHLIWLGSHLL 461 (1196)
Q Consensus 435 ~~~~~~~~~~~~~~~v~~l~~~~d~~l 461 (1196)
...+|..-|.+.+|+.+.-.
T Consensus 439 -------sRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 439 -------SRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred -------cccccceeeeeeeccccCcc
Confidence 11233345778888877643
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-09 Score=132.92 Aligned_cols=334 Identities=13% Similarity=0.104 Sum_probs=203.0
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
..+++...+...+++-..+ ++.|... .+. +.. ...+ -..|.+ .++.+++||.++.+|+|-.||.|.+|
T Consensus 164 ~~I~~~~~ge~~~i~~~~~-~~~~~v~--~~~--~~~--~~~~~~~~Htf----~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCK-IHIYFVP--KHT--KHT--SSRDITVHHTF----NITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred ccEEEcCCceEEEEEEeee-EEEEEec--ccc--eee--ccchhhhhhcc----cceeEEeccccceEEEeccCCcEEEE
Confidence 3345555555555555444 7777763 211 111 1111 122433 37899999999999999999999999
Q ss_pred ECCC--C---eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 103 SVDG--N---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 103 ~~~~--~---~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.--+ + .+.+.-=|.+.|.+++||+||.+|.+|+.++.+.+|...-.. .+-+.. -...+.
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPR--------------Lgs~I~ 296 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPR--------------LGSPIL 296 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccc--------------cCCeeE
Confidence 8654 1 234555577899999999999999999999999998643111 111111 124678
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccC--------CCceeEEEEcCCCCeEEEEecCCCC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELK--------AFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~--------~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
.+.|||||.+.+ +.. +|..|.+-...+-+...+- ++. .++...+++.|.-+.++-.+.
T Consensus 297 ~i~vS~ds~~~s-l~~------~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~---- 365 (792)
T KOG1963|consen 297 HIVVSPDSDLYS-LVL------EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH---- 365 (792)
T ss_pred EEEEcCCCCeEE-EEe------cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC----
Confidence 999999999998 553 5788888877444443332 222 456688899996555555444
Q ss_pred CCCCeEEEEeCCC-eeEEEEEec--cCC------CCcEEEEEEccCCCeeEEEEccCC-------cceEEEEEec--CCE
Q 000992 247 NKCPSIVFYERNG-LERSSFDIN--EQI------DSTVELLKWNCMSDLLAAVVRFEE-------YDSVKICFFS--NNH 308 (1196)
Q Consensus 247 ~~~~~V~~~e~nG-l~~~~f~l~--~~~------~~~V~~laWSpDg~~LAs~~~d~~-------~~~V~lW~~~--n~~ 308 (1196)
...|.||+.-- ....++..- ... ...+.+++.+.+|..+|+.-...+ ...+|+|..+ .-.
T Consensus 366 --~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt 443 (792)
T KOG1963|consen 366 --PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKT 443 (792)
T ss_pred --CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcce
Confidence 35799998421 111222211 111 134788999999999998764321 2378999875 245
Q ss_pred EEEEEEEEEecCCc-E-EEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc-cCCCCCc--
Q 000992 309 WYLKYEIRYLRRDG-I-RFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPM-- 383 (1196)
Q Consensus 309 wylkq~l~~~~~~~-~-~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-~~vpppm-- 383 (1196)
|.|.-.+.-+++.. . .+..+|....+......+|.+ ++|-|.. .++-|.-
T Consensus 444 ~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~-------------------------KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 444 FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF-------------------------KIWVFTDDSNIYKKSSN 498 (792)
T ss_pred eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeE-------------------------EEEEEecccccCcCccc
Confidence 66776666554433 2 233333332123333334444 3333310 0110100
Q ss_pred -eeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 384 -YLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 384 -~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
+...+ -|..++.+.+||.|| ..||++ .|++|.+|+..+.
T Consensus 499 W~c~~i~sy~k~~i~a~~fs~dG--slla~s-~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 499 WTCKAIGSYHKTPITALCFSQDG--SLLAVS-FDDTITIWDYDTK 540 (792)
T ss_pred eEEeeeeccccCcccchhhcCCC--cEEEEe-cCCEEEEecCCCh
Confidence 11111 256788999999999 666666 7789999999874
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=130.24 Aligned_cols=201 Identities=12% Similarity=0.145 Sum_probs=137.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
-.+..++|++--..+|++..|-.|++|+........+.+ ....|.|++|-|-+..-.+++--+-|-+|+.+........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 468899999988888999999999999987743333332 2467999999998765444444456889975433222221
Q ss_pred ccccc-CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 155 LEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 155 l~~~~-~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
..... +-..| .+..+| ..|.++.|.+||..++ .++. +++.|+|||+++|..+..-....|.+.-+-||||
T Consensus 179 ~~~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~-tAS~-----gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 179 IRMMSTHHLQV--LQDPGH-NPVTSMQWNEDGTILV-TASF-----GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred cccccccchhh--eeCCCC-ceeeEEEEcCCCCEEe-eccc-----CcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 11000 00001 112233 6789999999999999 5664 5789999999999877654334456688999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLERSS-FDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
|..|-.++.|. .-++|..|-.-..+ +.+ ..+.|..-+|||+|..|..++...
T Consensus 250 gd~lfaAt~da------vfrlw~e~q~wt~erw~l---gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 250 GDVLFAATCDA------VFRLWQENQSWTKERWIL---GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred CCEEEEecccc------eeeeehhcccceecceec---cCCceeeeeecCCCCEEEEEEcCC
Confidence 99998887764 58889443222211 111 235899999999999888877654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=133.85 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=133.5
Q ss_pred CCEEEEEEccC--CCEEEEEECCCcEEEEECCC-----------------CeEEEeeeecCcEEEEEECCCCC-EEEEEe
Q 000992 76 DSITAFDYLME--KEALIVGTSSGLLLLHSVDG-----------------NATEVVGRVEGGVRFISPSPDGD-LLGVTT 135 (1196)
Q Consensus 76 ~~v~~v~~spd--~~~La~as~dG~I~lw~~~~-----------------~~~e~vg~~~~~I~~~awSPDg~-~LA~~s 135 (1196)
+.++-+.-++- .-..|+=++.|.|.+|+... ..+-.++.|.+.=.++.|||--. .|++|.
T Consensus 152 g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGD 231 (440)
T KOG0302|consen 152 GGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGD 231 (440)
T ss_pred cccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCc
Confidence 44555444444 44556668999999999742 12234555677778999999311 244554
Q ss_pred CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCC--
Q 000992 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSG-- 212 (1196)
Q Consensus 136 ~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G-- 212 (1196)
.-+.|.+|. +..+ .+.. ...-|.+|...|-.+.|||.-. .|| ++|. |++|||||.+.|
T Consensus 232 c~~~I~lw~----~~~g-~W~v-------d~~Pf~gH~~SVEDLqWSptE~~vfa-ScS~------DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 232 CVKGIHLWE----PSTG-SWKV-------DQRPFTGHTKSVEDLQWSPTEDGVFA-SCSC------DGSIRIWDIRSGPK 292 (440)
T ss_pred cccceEeee----eccC-ceee-------cCccccccccchhhhccCCccCceEE-eeec------CceEEEEEecCCCc
Confidence 455676653 3221 1111 1233557888899999999654 667 4543 689999999888
Q ss_pred -cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE----EEEeccCCCCcEEEEEEccC-CCe
Q 000992 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS----SFDINEQIDSTVELLKWNCM-SDL 286 (1196)
Q Consensus 213 -~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~----~f~l~~~~~~~V~~laWSpD-g~~ 286 (1196)
.++.+ ..|.+-|+.|+|+-.-.+||||++++ ++.+|+..-...+ +|+. |...|.+|.|+|. ..+
T Consensus 293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdG------t~~iwDLR~~~~~~pVA~fk~---Hk~pItsieW~p~e~s~ 362 (440)
T KOG0302|consen 293 KAAVST-KAHNSDVNVISWNRREPLLASGGDDG------TLSIWDLRQFKSGQPVATFKY---HKAPITSIEWHPHEDSV 362 (440)
T ss_pred cceeEe-eccCCceeeEEccCCcceeeecCCCc------eEEEEEhhhccCCCcceeEEe---ccCCeeEEEeccccCce
Confidence 44444 67889999999999988999999864 6999994322222 3432 3567999999984 446
Q ss_pred eEEEEccCCcceEEEEEec
Q 000992 287 LAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 287 LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|+++.|. +|.|||+.
T Consensus 363 iaasg~D~---QitiWDls 378 (440)
T KOG0302|consen 363 IAASGEDN---QITIWDLS 378 (440)
T ss_pred EEeccCCC---cEEEEEee
Confidence 66666666 79999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.2e-10 Score=124.60 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=163.7
Q ss_pred ceeEEeeecCCCEEEEEeCCC-cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--
Q 000992 22 ILQFSALDIEQNRLFFASSAN-NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL-- 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~-~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~-- 98 (1196)
.+..+.|+-|.-.|..++.++ .++.-+. +.+-. +...++-.|+-+-||. ..+|+++.+..
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~--~~k~~-------------~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~ 69 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKDGYKIFSCSP--FEKCF-------------SKDTEGVSIVEMLFSS--SLVAIVSIKQPRK 69 (391)
T ss_pred ceeeeeeccceeEEEccCCCceeEEecCc--hHHhh-------------cccCCCeEEEEeeccc--ceeEEEecCCCce
Confidence 667777888888888888887 3433333 22211 1112234677777775 45666665443
Q ss_pred EEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.++++..-+.+-+-=.....|.++.++-+ .|++.=.+. |.+.+ ++-.+ +|+.+ ...++..++.
T Consensus 70 Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~Mkl-----LhTI~--------t~~~n~~gl~ 133 (391)
T KOG2110|consen 70 LKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKL-----LHTIE--------TTPPNPKGLC 133 (391)
T ss_pred EEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEccc-EEEEeccccee-----ehhhh--------ccCCCccceE
Confidence 77888764332222234678999999876 455454443 77765 22222 33222 0012335678
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE- 256 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e- 256 (1196)
.++.++++.|+| .-+- ...+.|.|||..+-+...+.+.|.+.+.+++|+|+|.+||++|.+++ .|++|.
T Consensus 134 AlS~n~~n~ylA-yp~s----~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT-----VIRVf~v 203 (391)
T KOG2110|consen 134 ALSPNNANCYLA-YPGS----TTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT-----VIRVFSV 203 (391)
T ss_pred eeccCCCCceEE-ecCC----CCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce-----EEEEEEc
Confidence 888889999999 3321 24578999999888888889999999999999999999999999754 677777
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+|.+..||. ++.-...|.+|+||||+++|++.+..+ ||.++.++.
T Consensus 204 ~~G~kl~eFR-RG~~~~~IySL~Fs~ds~~L~~sS~Te---TVHiFKL~~ 249 (391)
T KOG2110|consen 204 PEGQKLYEFR-RGTYPVSIYSLSFSPDSQFLAASSNTE---TVHIFKLEK 249 (391)
T ss_pred CCccEeeeee-CCceeeEEEEEEECCCCCeEEEecCCC---eEEEEEecc
Confidence 6888877764 222235799999999999999999998 999998764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=125.49 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=179.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccc--cccc--ccceeeccccccccccCCCCCCEEEEEEc-------cCCCEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSS--FQNE--RASIKTAISAEIEHIDLEPGDSITAFDYL-------MEKEAL 90 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-------pd~~~L 90 (1196)
-.-++-|.|||..|.+-++|+.+-.|++.. ..++ ...... .. .+.-...++.|.+-.|- |+....
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~---~~-~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS---KH-LSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccc---cc-eeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 355677999999999999999899999851 1111 000000 00 00112225678887775 788899
Q ss_pred EEEECCCcEEEEECCCCeEEE----eeeec--CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcccc
Q 000992 91 IVGTSSGLLLLHSVDGNATEV----VGRVE--GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~----vg~~~--~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
|+.+.+.-|+|||.-+|++.. ..+.+ .+-.+++|||||+.|..| -..+|++++.. . +....+ +
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~----R--pGr~c~----v 195 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTS----R--PGRDCP----V 195 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeecc----C--CCCCCc----c
Confidence 999999999999999887642 11111 134689999999999754 55689876421 0 000000 0
Q ss_pred ccCccc---cCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 165 HEPELS---SSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 165 s~tqf~---~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
-.|.++ +..+-+.+++|+|- .+.+| +++. .+++-||+-..+..+..+-+|.|-|+.+.|.|+|+.+-||
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a-~gsY------~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLA-VGSY------GQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCccee-eecc------cceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 001111 23456789999995 45889 8875 3678888876778888888999999999999999999999
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEeccCC--CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEE
Q 000992 241 YDRKSENKCPSIVFYERNGLERSSFDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRY 317 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~--~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~ 317 (1196)
.+. ...|-.|+..--+.-.+.|..+- ++.=.-...-|+|++||+|+.|+ .|++|+++.+ .|. ..+
T Consensus 269 aRk-----~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG---~V~vwdlk~~gn~~----sv~ 336 (406)
T KOG2919|consen 269 ARK-----DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG---SVRVWDLKDLGNEV----SVT 336 (406)
T ss_pred ccC-----CCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc---cEEEEecCCCCCcc----ccc
Confidence 986 45788898421111111222111 22222344469999999999999 9999999863 221 111
Q ss_pred ec-CC-cEEEEEccCCCc
Q 000992 318 LR-RD-GIRFMWHPTKPL 333 (1196)
Q Consensus 318 ~~-~~-~~~v~Wsp~~~~ 333 (1196)
.. .. ...|+.+|--|.
T Consensus 337 ~~~sd~vNgvslnP~mpi 354 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPIMPI 354 (406)
T ss_pred ccccccccceecCcccce
Confidence 11 12 256888887553
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-11 Score=128.31 Aligned_cols=293 Identities=16% Similarity=0.178 Sum_probs=171.1
Q ss_pred CCCcEEEEECC--CCeE--EEeeeecCcEEEEEECCC-CCEEEEEeC---Cc----eEEEEeccCceeeeeecccccCcc
Q 000992 95 SSGLLLLHSVD--GNAT--EVVGRVEGGVRFISPSPD-GDLLGVTTG---FG----QILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 95 ~dG~I~lw~~~--~~~~--e~vg~~~~~I~~~awSPD-g~~LA~~s~---d~----tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
.+..|.+...+ ++.+ +.+-++.+.|+.++=||- ..+||++.. |. .+-+|+.- ++.......+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ip-e~~~~S~~~tlE--- 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIP-EPLGQSNSSTLE--- 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecc-cccCccccchhh---
Confidence 34556554443 3333 355677888999999995 556777754 22 23344311 111110000000
Q ss_pred ccc--cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EEEe-----ccCCCceeEEEEcC--
Q 000992 163 DVH--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASS-----ELKAFMGAVLEWMP-- 232 (1196)
Q Consensus 163 ~Vs--~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~-----e~~~~~v~slawsP-- 232 (1196)
.|. +| .+-+.+.+|-|-|++.-+|+ - .+..|.+|+++++.. .... ..+...-.+-+|||
T Consensus 114 ~v~~Ldt---eavg~i~cvew~Pns~klas-m-------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 114 CVASLDT---EAVGKINCVEWEPNSDKLAS-M-------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred HhhcCCH---HHhCceeeEEEcCCCCeeEE-e-------ccCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 000 00 11247899999999999993 2 257899999987755 2211 11233347789999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
||+.+|++++ .++.+|+.. ..+..+.++..+...|.++.|||+-+ +||+++.|+ .|+|||+.+-.. -
T Consensus 183 dgnqv~tt~d-------~tl~~~D~R-T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdg---yvriWD~R~tk~-p 250 (370)
T KOG1007|consen 183 DGNQVATTSD-------STLQFWDLR-TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDG---YVRIWDTRKTKF-P 250 (370)
T ss_pred ccceEEEeCC-------CcEEEEEcc-chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCc---cEEEEeccCCCc-c
Confidence 8999999886 469999953 12222334433345699999999988 688888888 899999987542 2
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcC-------CEEEEeeccccCCCCCce
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG-------SKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg-------~~l~lt~l~~~~vpppm~ 384 (1196)
.+++..|..-.+.|.|+|.-.+.+..+..|-.+. ....-++. +...+.+--|- ..=+.-|+....
T Consensus 251 v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~-Lsca~svS-SE~qi~~~~dese~e~~dseer~kpL~dg~------ 322 (370)
T KOG1007|consen 251 VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN-LSCASSVS-SEQQIEFEDDESESEDEDSEERVKPLQDGQ------ 322 (370)
T ss_pred ccccCCCceEEEEEEecCccceEEEecCCCceeE-EEeccccc-cccccccccccccCcchhhHHhcccccccc------
Confidence 2455444444588999999887544444443332 11111111 11111110010 011111222111
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
..++ +|.+.|.+++||.-.+ =++|+++.||.+.|=+++
T Consensus 323 l~tydehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 323 LETYDEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccceEEEeeccCCC-eeEEEeccCceEEeecCC
Confidence 1334 5899999999998763 578999999999887765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-10 Score=137.75 Aligned_cols=210 Identities=10% Similarity=0.052 Sum_probs=120.1
Q ss_pred CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEE--EeC-Cc--eEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGV--TTG-FG--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~--~s~-d~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
+.|.+.|.+++....+......+.+-+|||||+.++. .+. ++ .|.+++.... ....+. .|.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--~~~~lt-----------~~~- 230 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--AGKKIL-----------ALQ- 230 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC--CceEee-----------cCC-
Confidence 3677788887655433333455788999999987443 443 33 3444332211 111111 111
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC---CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~---G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
......+|||||+.||.++...+ ..+-.+.+|+... |+.........+.....+|||||+.||..+...+
T Consensus 231 --g~~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 231 --GNQLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred --CCccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 22356899999999995443211 1233455577644 3444444433344567899999999998875321
Q ss_pred CCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEE
Q 000992 249 CPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 249 ~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~ 326 (1196)
...|..++.++ .... .+.. ....+...+|||||+.||....+.+...|.+|+..+... ..+...........
T Consensus 304 ~~~ly~~~~~~~g~~~~--~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~ 377 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPR--LLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPS 377 (428)
T ss_pred CceEEEEECcccccceE--Eecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceE
Confidence 23444444432 1111 1221 123567899999999999887654334699999877643 22221111225688
Q ss_pred EccCCCc
Q 000992 327 WHPTKPL 333 (1196)
Q Consensus 327 Wsp~~~~ 333 (1196)
|+|++..
T Consensus 378 wSpDG~~ 384 (428)
T PRK01029 378 WAIDSLH 384 (428)
T ss_pred ECCCCCE
Confidence 9999875
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=137.47 Aligned_cols=197 Identities=16% Similarity=0.101 Sum_probs=131.4
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEE-CCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 79 TAFDYLMEKEALIVGTSSGLLLLHS-VDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 79 ~~v~~spd~~~La~as~dG~I~lw~-~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
..|+|++||..|++++.||++++|+ ++-..+...-.|.+.|.++.|||||+.||+.|.| ...+|+.. .+..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~----~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN----TGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec----cCchhhh
Confidence 7799999999999999999999999 4433332333457889999999999999999999 78887632 2222221
Q ss_pred cc-CccccccCccccCCCCeEEEEEccCC---c-eEEEeeccccc-cCCCCEEEEEECCCCcEEEEecc--CCCceeEEE
Q 000992 158 LA-EGFDVHEPELSSSFSFKSPISWRGDG---K-YFATLSEFCNS-SKLHKRLKVWERDSGTLQASSEL--KAFMGAVLE 229 (1196)
Q Consensus 158 ~~-~~~~Vs~tqf~~~~~~v~~isWspDG---~-~lAsvss~d~~-~~~d~~irVWd~~~G~l~~~~e~--~~~~v~sla 229 (1196)
.. . ..+-....+.|+-|+ . ++|++- .+. ...-..+.+|+. . ..+..... ....+.+++
T Consensus 223 ~t~~----------~k~~~~~~cRF~~d~~~~~l~laa~~--~~~~~v~~~~~~~w~~-~-~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 223 KTPF----------SKDEMFSSCRFSVDNAQETLRLAASQ--FPGGGVRLCDISLWSG-S-NFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred cCCc----------ccchhhhhceecccCCCceEEEEEec--CCCCceeEEEeeeecc-c-cccchhhhhhccCcceeEE
Confidence 11 0 111234567788777 2 333122 221 011123445665 2 33332222 223479999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
-|+||+++|.|+.+ +.|.+++..-++.-++ .+.-|...|..|.|+||++.+++.+.+. +..+-.+
T Consensus 289 VS~dGkf~AlGT~d------GsVai~~~~~lq~~~~-vk~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l 353 (398)
T KOG0771|consen 289 VSDDGKFLALGTMD------GSVAIYDAKSLQRLQY-VKEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKL 353 (398)
T ss_pred EcCCCcEEEEeccC------CcEEEEEeceeeeeEe-ehhhheeeeeeEEEcCCcCcccccccCC---ceeEEEE
Confidence 99999999999986 4699998766655444 2333456899999999999999988887 5555443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=126.01 Aligned_cols=249 Identities=17% Similarity=0.313 Sum_probs=164.0
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
..|.+.+|++|+..+| ++- ....|.||....+ +...++..|+..|..|.|+|.++.|.+++.|.+
T Consensus 11 ~pitchAwn~drt~iA-v~~------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn----- 78 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIA-VSP------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN----- 78 (361)
T ss_pred CceeeeeecCCCceEE-ecc------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC-----
Confidence 4678999999999999 764 3467999988433 245677789999999999999999999998753
Q ss_pred eEEEEeC-CCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCc-EEEE
Q 000992 251 SIVFYER-NGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDG-IRFM 326 (1196)
Q Consensus 251 ~V~~~e~-nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~-~~v~ 326 (1196)
--+|+. .|-. .....|- .....+..|.|||.+..+|+++..+ .|-+|... ...|+..+.+.-+-.+. .++.
T Consensus 79 -ayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 79 -AYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred -ccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeeee
Confidence 445765 3321 1122221 1234588999999999999999888 89999865 33454433343332333 8899
Q ss_pred EccCCCceEEEEecCCcEEEEE-EEEeee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCC
Q 000992 327 WHPTKPLQLICWTLDGQITTYN-FIWTTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~-~~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg 403 (1196)
|||.+-+ |..++.|+...+.. ++-.++ |.. ..+ |++ .||.. -|+-+. ...++|..|.|||+|
T Consensus 154 WhpnnVL-laaGs~D~k~rVfSayIK~Vdekpap----~pW-gsk---~PFG~-----lm~E~~-~~ggwvh~v~fs~sG 218 (361)
T KOG1523|consen 154 WHPNNVL-LAAGSTDGKCRVFSAYIKGVDEKPAP----TPW-GSK---MPFGQ-----LMSEAS-SSGGWVHGVLFSPSG 218 (361)
T ss_pred ccCCcce-ecccccCcceeEEEEeeeccccCCCC----CCC-ccC---CcHHH-----HHHhhc-cCCCceeeeEeCCCC
Confidence 9998764 77777777655321 111111 100 000 111 01110 122111 346789999999999
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCc-cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 404 SKNCLAAILSDGCLCVVDLPAPDM-LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 404 ~~~~lAs~~~dg~v~lw~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
+.||=.++|.++.+-+...+.. .+.+ ....-..+.+.|..+..+++.+.++
T Consensus 219 --~~lawv~Hds~v~~~da~~p~~~v~~~------------~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 219 --NRLAWVGHDSTVSFVDAAGPSERVQSV------------ATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred --CEeeEecCCCceEEeecCCCchhccch------------hhccCCceeeEeecCCceeecCCCC
Confidence 8999999999999998876431 1111 1112357888999999988877663
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=125.74 Aligned_cols=313 Identities=12% Similarity=0.052 Sum_probs=185.9
Q ss_pred eecCcEEEEEECC-----CCCEEEEEeCCceEEEEeccCceeeeeec-ccccCccccccCccccCCCCeEEEEEccCCc-
Q 000992 114 RVEGGVRFISPSP-----DGDLLGVTTGFGQILVMTHDWDLLYENPL-EELAEGFDVHEPELSSSFSFKSPISWRGDGK- 186 (1196)
Q Consensus 114 ~~~~~I~~~awSP-----Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l-~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~- 186 (1196)
.|...|..++|++ +-+.+|+++++ .+.+..-..+. +..+ +...+. .++.....++|+-|-.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~--~ir~lq~y~D~---------d~~Esfytcsw~yd~~~ 103 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDG--GIRLLQSYADE---------DHDESFYTCSWSYDSNT 103 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCcc--ceeeeeeccCC---------CCCcceEEEEEEecCCC
Confidence 4556788888873 33455665554 66666543332 1111 100000 2445668999987755
Q ss_pred ---eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEEeCC-Cee
Q 000992 187 ---YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYERN-GLE 261 (1196)
Q Consensus 187 ---~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~e~n-Gl~ 261 (1196)
++| +++ ..+.|||.|...+++.....+|.+.++.|.+.|+- ++|.|+|.| +.|++|+.. +.-
T Consensus 104 ~~p~la-~~G------~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD------~svRlwnI~~~~C 170 (385)
T KOG1034|consen 104 GNPFLA-AGG------YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD------HSVRLWNIQTDVC 170 (385)
T ss_pred CCeeEE-eec------ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC------ceEEEEeccCCeE
Confidence 677 565 35899999999999999999999999999999986 788999986 579999953 221
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC--EEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~--~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.-.|---+.|.+.|.++.||+||..+|+++-|. ++++|+++.. +-++. .+.-|+|++..+ .+-+
T Consensus 171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh---slk~W~l~~~~f~~~lE----------~s~~~~~~~t~~-pfpt 236 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH---SLKLWRLNVKEFKNKLE----------LSITYSPNKTTR-PFPT 236 (385)
T ss_pred EEEecccccccCcEEEEEEcCCCCeeeccCCcc---eEEEEecChhHHhhhhh----------hhcccCCCCccC-cCCc
Confidence 111111123467899999999999999999998 9999999832 11121 234455555321 0111
Q ss_pred cCCcEEEEEEE------Eeee---cCCCeeEEEEcCCEEEEeec-c----ccCCCCCceeeee----cC-CCCEEEEEEe
Q 000992 340 LDGQITTYNFI------WTTA---VMENSTALVIDGSKILVTPL-S----LSLMPPPMYLFSL----KF-PTAVTEMAFY 400 (1196)
Q Consensus 340 ~~g~~~~~~~~------~~~~---~~d~~~v~viDg~~l~lt~l-~----~~~vpppm~~~~l----~~-~~~V~~Vafs 400 (1196)
. .....+|. .-++ +-+.-++.-.-++.|..|-. + .-++-||-+..++ .. ...||-|-|+
T Consensus 237 ~--~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~ 314 (385)
T KOG1034|consen 237 P--KTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFA 314 (385)
T ss_pred c--ccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEe
Confidence 0 00001110 0001 11122222233445555533 1 1134344333333 12 3357877777
Q ss_pred cCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEE
Q 000992 401 SKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRG 477 (1196)
Q Consensus 401 pdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~ 477 (1196)
-|.-.++||.+...|.|.+|+++..+.. ..+.+.. ......|+|.+|+.|+.+|....++ ..++=|+
T Consensus 315 ~d~~~~~la~gnq~g~v~vwdL~~~ep~------~~ttl~~--s~~~~tVRQ~sfS~dgs~lv~vcdd--~~Vwrwd 381 (385)
T KOG1034|consen 315 FDPWQKMLALGNQSGKVYVWDLDNNEPP------KCTTLTH--SKSGSTVRQTSFSRDGSILVLVCDD--GTVWRWD 381 (385)
T ss_pred ecHHHHHHhhccCCCcEEEEECCCCCCc------cCceEEe--ccccceeeeeeecccCcEEEEEeCC--CcEEEEE
Confidence 6653378999999999999999863322 0000000 1223489999999999887766554 3444443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=141.08 Aligned_cols=219 Identities=14% Similarity=0.116 Sum_probs=138.0
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG 97 (1196)
.+...+|.+|+..|++++.+ ..|+.||+ .+++.. .+ ... .+...+..|||||+.|+.+ +.+|
T Consensus 219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl--~tg~~~-~l-------t~~----~g~~~~~~wSPDG~~La~~~~~~g 284 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDI--YTQVRE-KV-------TSF----PGINGAPRFSPDGKKLALVLSKDG 284 (448)
T ss_pred cccCceECCCCCEEEEEEecCCCcEEEEEEC--CCCCeE-Ee-------cCC----CCCcCCeeECCCCCEEEEEEeCCC
Confidence 45678999999999888642 36999998 444321 11 111 1234468999999998864 5566
Q ss_pred c--EEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-Cce--EEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 L--LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 ~--I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~t--V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
. |.+||.++++...+..+...+...+|||||+.|+..+. ++. |.+++........ +. |.+.
T Consensus 285 ~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~--Lt------------~~g~ 350 (448)
T PRK04792 285 QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR--LT------------FEGE 350 (448)
T ss_pred CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--Ee------------cCCC
Confidence 5 77789988877654444455678999999999998874 333 4333321111111 11 0111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.....+|+|||++++ ..+.. .+...|.++|..+|+....... ....+.+|+|||+.|+.++.+.. ...+
T Consensus 351 --~~~~~~~SpDG~~l~-~~~~~---~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~~~g---~~~l 419 (448)
T PRK04792 351 --QNLGGSITPDGRSMI-MVNRT---NGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTTYQG---KQVL 419 (448)
T ss_pred --CCcCeeECCCCCEEE-EEEec---CCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEecCC---ceEE
Confidence 124579999999998 44422 1223566678877776544332 23345689999999988776432 3457
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
.+++.+|..... ++.+ .+.+...+|||
T Consensus 420 ~~~~~~G~~~~~--l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 420 AAVSIDGRFKAR--LPAG-QGEVKSPAWSP 446 (448)
T ss_pred EEEECCCCceEE--CcCC-CCCcCCCccCC
Confidence 778888865443 3322 34577889998
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=128.87 Aligned_cols=214 Identities=12% Similarity=0.087 Sum_probs=143.2
Q ss_pred EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 111 VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
.+.+|.+.|..++|+|- .+.||+||+|-+|.+|..--+-+. .. ...+|- ...+|.-.|-.|.|.|-..-+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~-----ltepvv--~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RD-----LTEPVV--ELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cC-----cccceE--EEeecceeEEEEeecccchhhH
Confidence 66678999999999994 578999999999999963211111 00 011110 1126677889999999876443
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~ 268 (1196)
.+++ .|.+|.|||..+|+-+-++. |+..+.+++|+-||++++++++|+ .|++|+ |.|....+- .
T Consensus 148 lsag------~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDK------kvRv~dpr~~~~v~e~--~ 212 (472)
T KOG0303|consen 148 LSAG------SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDK------KVRVIDPRRGTVVSEG--V 212 (472)
T ss_pred hhcc------CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccc------eeEEEcCCCCcEeeec--c
Confidence 1333 57999999999999888877 999999999999999999999975 699999 445443331 2
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE-EEEEEEEecCCc-EEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy-lkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.|....-..+-|=.+|.++.+|-+......+-||+..|..-- .-+++. ..++ ..=.|+|++...-.++.+||.+.-
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 222234456778899996655554333337999999885321 112222 1233 555788888764444445666654
Q ss_pred EEE
Q 000992 347 YNF 349 (1196)
Q Consensus 347 ~~~ 349 (1196)
+.+
T Consensus 291 yEi 293 (472)
T KOG0303|consen 291 FEI 293 (472)
T ss_pred EEe
Confidence 443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.7e-10 Score=133.20 Aligned_cols=208 Identities=18% Similarity=0.143 Sum_probs=130.5
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.++|.+++....+-.+...+.+.+|||||+.||.++.+ .+|.+|+..-... ..+. .+..
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~--------------~~~~ 234 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVA--------------SFPG 234 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEee--------------cCCC
Confidence 5788888776554333345568999999999999998743 3677765321111 1111 1112
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+..++|+|||+.|+ .+... .+...|.+||..+|+..... .+.+.....+|+|||+.|+.++...+ ...|-.
T Consensus 235 ~~~~~~~spDg~~l~-~~~~~---~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g---~~~iy~ 306 (417)
T TIGR02800 235 MNGAPAFSPDGSKLA-VSLSK---DGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGG---SPQIYM 306 (417)
T ss_pred CccceEECCCCCEEE-EEECC---CCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCC---CceEEE
Confidence 345789999999887 43311 23467999999667654433 34445567899999999988776432 346777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
++.++.....+.. ....+..++|||||+.|+....+.+...|.+|+..+..+ +.+.- ........|+|++...
T Consensus 307 ~d~~~~~~~~l~~---~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~---~~l~~-~~~~~~p~~spdg~~l 379 (417)
T TIGR02800 307 MDADGGEVRRLTF---RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE---RVLTD-TGLDESPSFAPNGRMI 379 (417)
T ss_pred EECCCCCEEEeec---CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe---EEccC-CCCCCCceECCCCCEE
Confidence 7765433222211 123467889999999999998775444688888876433 11211 1111345799998763
Q ss_pred EE
Q 000992 335 LI 336 (1196)
Q Consensus 335 L~ 336 (1196)
+.
T Consensus 380 ~~ 381 (417)
T TIGR02800 380 LY 381 (417)
T ss_pred EE
Confidence 33
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=127.95 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=169.5
Q ss_pred EeeeecCcEEEEEECCCC--CEEEEEeCCceEEEEeccCceeeeee---ccccc-CccccccCccccCCCCeEEEEEcc-
Q 000992 111 VVGRVEGGVRFISPSPDG--DLLGVTTGFGQILVMTHDWDLLYENP---LEELA-EGFDVHEPELSSSFSFKSPISWRG- 183 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg--~~LA~~s~d~tV~l~~~~~d~~~~~~---l~~~~-~~~~Vs~tqf~~~~~~v~~isWsp- 183 (1196)
.++ |.++|+.+.-+|-| -+.|+=+..|.|.+|+.. ..+.... +.... ...+| -.|.+|...=..+.|||
T Consensus 147 ~i~-h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~-~~l~~l~~~~~~~~~s~~~Pl--~t~~ghk~EGy~LdWSp~ 222 (440)
T KOG0302|consen 147 SIP-HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLA-PHLNALSEPGLEVKDSEFRPL--FTFNGHKGEGYGLDWSPI 222 (440)
T ss_pred ccc-cccccceeeecccCCcceeeeecccCcEEEEEch-hhhhhhcCccccccccccCce--EEecccCccceeeecccc
Confidence 344 46777777777765 455555788999998632 1111110 00000 11111 12335666668999999
Q ss_pred -CCceEEEeeccccccCCCCEEEEEECCCCcEEEE---eccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEEe-C
Q 000992 184 -DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYE-R 257 (1196)
Q Consensus 184 -DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~---~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~e-~ 257 (1196)
.|. |+ ++. -.+.|++|.+.+|.-..- +.+|...|..|+|||.- ..+||+|.|+ .|++|+ |
T Consensus 223 ~~g~-Ll-sGD------c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg------sIrIWDiR 288 (440)
T KOG0302|consen 223 KTGR-LL-SGD------CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG------SIRIWDIR 288 (440)
T ss_pred cccc-cc-cCc------cccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc------eEEEEEec
Confidence 443 23 121 236799999988764432 34577889999999975 5899999975 699999 6
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE-EEEEEEEecCCcEEEEEccCCCceEE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY-LKYEIRYLRRDGIRFMWHPTKPLQLI 336 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy-lkq~l~~~~~~~~~v~Wsp~~~~~L~ 336 (1196)
+|....-. +...+...|+-|+||-+-.+||+|+.|+ +++|||+.+..-- -..++.+|..-.+++.|||.....++
T Consensus 289 s~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdG---t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~ia 364 (440)
T KOG0302|consen 289 SGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDG---TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIA 364 (440)
T ss_pred CCCcccee-EeeccCCceeeEEccCCcceeeecCCCc---eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEE
Confidence 66433322 2223456799999999999999999999 9999999875321 01245555444599999999888888
Q ss_pred EEecCCcEEEEEEEEeeecCCCee-EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 337 CWTLDGQITTYNFIWTTAVMENST-ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 337 ~~~~~g~~~~~~~~~~~~~~d~~~-v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
+...|.++.+++..-. .+.... .-...| ...+|| +-.+.-+-+.-|..|.|++.-+ .+|++.+.||
T Consensus 365 asg~D~QitiWDlsvE--~D~ee~~~~a~~~---------L~dlPp-QLLFVHqGQke~KevhWH~QiP-G~lvsTa~dG 431 (440)
T KOG0302|consen 365 ASGEDNQITIWDLSVE--ADEEEIDQEAAEG---------LQDLPP-QLLFVHQGQKEVKEVHWHRQIP-GLLVSTAIDG 431 (440)
T ss_pred eccCCCcEEEEEeecc--CChhhhccccccc---------hhcCCc-eeEEEecchhHhhhheeccCCC-CeEEEecccc
Confidence 8888888875444322 221110 011111 123444 3333322344588999999874 5667766675
Q ss_pred cEEEE
Q 000992 416 CLCVV 420 (1196)
Q Consensus 416 ~v~lw 420 (1196)
+.+|
T Consensus 432 -fnVf 435 (440)
T KOG0302|consen 432 -FNVF 435 (440)
T ss_pred -eeEE
Confidence 3344
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=132.33 Aligned_cols=205 Identities=15% Similarity=0.071 Sum_probs=125.3
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.++|.+++....+..+...+...+|||||+.||.++.+ ..|.+|+.... ....+.. + ..
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--~~~~l~~-----------~---~g 243 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--RREQITN-----------F---EG 243 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--CEEEccC-----------C---CC
Confidence 3777888876554343346778999999999999998744 24555542211 1111111 1 12
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.....+|||||+.|| .+... .++..|.+||..+|+..... .+.+.....+|+|||+.|+..+...+ ...|-.
T Consensus 244 ~~~~~~~SpDG~~la-~~~~~---~g~~~Iy~~d~~~~~~~~lt-~~~~~~~~~~~spDg~~i~f~s~~~g---~~~iy~ 315 (430)
T PRK00178 244 LNGAPAWSPDGSKLA-FVLSK---DGNPEIYVMDLASRQLSRVT-NHPAIDTEPFWGKDGRTLYFTSDRGG---KPQIYK 315 (430)
T ss_pred CcCCeEECCCCCEEE-EEEcc---CCCceEEEEECCCCCeEEcc-cCCCCcCCeEECCCCCEEEEEECCCC---CceEEE
Confidence 234689999999998 43311 23457999999777765433 34455677899999999988875422 346766
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
++.++......+... ......+|||||+.|+....+.....|.+|+..+.... .+.. ........|+|++..
T Consensus 316 ~d~~~g~~~~lt~~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~---~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 316 VNVNGGRAERVTFVG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR---ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EECCCCCEEEeecCC---CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE---EccC-CCCCCCceECCCCCE
Confidence 775433222222211 12346789999999999876543335778887765431 1211 111134589998875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.7e-10 Score=125.44 Aligned_cols=206 Identities=15% Similarity=0.174 Sum_probs=150.0
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCCC---------eEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEE
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDGN---------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVM 143 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~---------~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~ 143 (1196)
.+.|.+++|.|- .+.||+||+|-+|++|....+ ..++.| |...|--++|.|-- +.|++++.|.+|.+|
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-HQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-cceeEEEEeecccchhhHhhccCCceEEEE
Confidence 368999999994 578999999999999997531 124555 58899999999984 578999999999998
Q ss_pred eccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 144 THDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 144 ~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
+-. ++..+-.. .|.+.|.+++|+-||.+|+| .. .|++|||||..+|++.+...+|.|
T Consensus 160 nv~----tgeali~l------------~hpd~i~S~sfn~dGs~l~T-tc------kDKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 160 NVG----TGEALITL------------DHPDMVYSMSFNRDGSLLCT-TC------KDKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred ecc----CCceeeec------------CCCCeEEEEEeccCCceeee-ec------ccceeEEEcCCCCcEeeecccccC
Confidence 742 21111111 26688999999999999994 44 479999999999999988767776
Q ss_pred ce-eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEc-cCCcceEE
Q 000992 224 MG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1196)
Q Consensus 224 ~v-~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~ 300 (1196)
.- .-.-|=-+|. |++++... .....+.+|+.+.+.... .+. ....+.|.==-|.||..++-.++. |+ .|+
T Consensus 217 ~k~~Raifl~~g~-i~tTGfsr--~seRq~aLwdp~nl~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~---~IR 289 (472)
T KOG0303|consen 217 AKPARAIFLASGK-IFTTGFSR--MSERQIALWDPNNLEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGKGDS---SIR 289 (472)
T ss_pred CCcceeEEeccCc-eeeecccc--ccccceeccCcccccCcc-eeEEeccCCceEEeeecCCCCEEEEEecCCc---ceE
Confidence 42 4566888999 66665532 235678999977554321 111 112345766779999999887764 34 799
Q ss_pred EEEecCCEEEE
Q 000992 301 ICFFSNNHWYL 311 (1196)
Q Consensus 301 lW~~~n~~wyl 311 (1196)
-+.+.|-.-|+
T Consensus 290 YyEit~d~P~~ 300 (472)
T KOG0303|consen 290 YFEITNEPPFV 300 (472)
T ss_pred EEEecCCCcee
Confidence 99988755443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=126.65 Aligned_cols=198 Identities=12% Similarity=0.066 Sum_probs=150.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec----cC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~----~~ 147 (1196)
..|++.+|++|+.++|++-.+.+|.||...+.. . .++..|+..|+++.|+|.+..|++++.|.+-.+|+. .|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 469999999999999999999999999988755 2 356668999999999999999999999999999975 34
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-----EeccCC
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-----SSELKA 222 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-----~~e~~~ 222 (1196)
.+.-.+. .++....+|.|+|.+.-|| +++ +.+.|-||-- +++-.. +-.|+.
T Consensus 91 kptlvLl----------------RiNrAAt~V~WsP~enkFA-VgS------gar~isVcy~-E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 91 KPTLVLL----------------RINRAATCVKWSPKENKFA-VGS------GARLISVCYY-EQENDWWVSKHIKKPIR 146 (361)
T ss_pred ccceeEE----------------EeccceeeEeecCcCceEE-ecc------CccEEEEEEE-ecccceehhhhhCCccc
Confidence 4432221 1234568999999999999 887 4589999988 666554 456778
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-----------CCee----EEEEEec-cCCCCcEEEEEEccCCCe
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-----------NGLE----RSSFDIN-EQIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-----------nGl~----~~~f~l~-~~~~~~V~~laWSpDg~~ 286 (1196)
..|.+++|.|++-++|.|+.|. ..++|.. +++- -|+.... ....++|..+.|||+|..
T Consensus 147 Stv~sldWhpnnVLlaaGs~D~------k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 147 STVTSLDWHPNNVLLAAGSTDG------KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred cceeeeeccCCcceecccccCc------ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 8899999999999999999763 4555531 1000 0110000 122468999999999999
Q ss_pred eEEEEccCCcceEEEEEecC
Q 000992 287 LAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 287 LAs~~~d~~~~~V~lW~~~n 306 (1196)
||-.+.|. +|-+=|-.+
T Consensus 221 lawv~Hds---~v~~~da~~ 237 (361)
T KOG1523|consen 221 LAWVGHDS---TVSFVDAAG 237 (361)
T ss_pred eeEecCCC---ceEEeecCC
Confidence 99999998 776665544
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=138.03 Aligned_cols=164 Identities=20% Similarity=0.235 Sum_probs=121.2
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccC-CCEEEEEECCCc
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLME-KEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~ 98 (1196)
.+.++.||+ |...|.++++|++|..|.+ ..+...- ...-|+. |..| +++|.++.|+|- .+.|++++.|-+
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~--~a~gl~e-~~~tPe~~lt~h----~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRL--TANGLPE-NEMTPEKILTIH----GEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEe--ccCCCCc-ccCCcceeeecc----cceEEEEEecchhhhHhhhhhccce
Confidence 678889995 5688999999999999999 4433321 1122322 3333 479999999996 478999999999
Q ss_pred EEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee-eeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY-ENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~-~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|+|||+.+++. ..+| |.+.|..++|||||+.+|++..||+|++.. +.+ +.++.... .+| ..+
T Consensus 702 i~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~----Prs~e~pv~Eg~--gpv--------gtR 766 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYE----PRSREQPVYEGK--GPV--------GTR 766 (1012)
T ss_pred eeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCceEEEeC----CCCCCCccccCC--CCc--------cCc
Confidence 99999988654 4677 589999999999999999999999998864 211 12221111 112 123
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD 210 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~ 210 (1196)
-..|-|-=||++++ |.+.+.. ..|+|.+||.+
T Consensus 767 gARi~wacdgr~vi-v~Gfdk~--SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 767 GARILWACDGRIVI-VVGFDKS--SERQVQMYDAQ 798 (1012)
T ss_pred ceeEEEEecCcEEE-Eeccccc--chhhhhhhhhh
Confidence 46899999999999 7777654 57899999984
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7e-10 Score=125.16 Aligned_cols=237 Identities=11% Similarity=0.052 Sum_probs=153.4
Q ss_pred ccCCCCCCEEEEEEccC-------CCEEEEEECCCcEEEEECCCC-e---EEEee------------------eecCcEE
Q 000992 70 IDLEPGDSITAFDYLME-------KEALIVGTSSGLLLLHSVDGN-A---TEVVG------------------RVEGGVR 120 (1196)
Q Consensus 70 ~~~~~~~~v~~v~~spd-------~~~La~as~dG~I~lw~~~~~-~---~e~vg------------------~~~~~I~ 120 (1196)
|++.-...+.+++|.-- |+++|+|+-+-+|.|||++-. . +-++| +|.+.|.
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl 247 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL 247 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH
Confidence 44444456677777543 589999999999999998631 1 11333 4778889
Q ss_pred EEEECCC-CCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccc
Q 000992 121 FISPSPD-GDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNS 197 (1196)
Q Consensus 121 ~~awSPD-g~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~ 197 (1196)
+++|+-. -..||+||.|.||++|+- ..++...+. .|.+.|.++.|.|.- ++|. +|+
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------------~~~k~Vq~l~wh~~~p~~LL-sGs---- 306 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------------HHGKKVQTLEWHPYEPSVLL-SGS---- 306 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehh----------------hcCCceeEEEecCCCceEEE-ecc----
Confidence 9999877 457999999999999763 233332222 244567999999865 4566 455
Q ss_pred cCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000992 198 SKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 198 ~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1196)
.|+++++.|... +..-... ..++.|..++|.|.......++.+ .++|+-|+......-.|++..| .+.|.
T Consensus 307 --~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td-----dG~v~~~D~R~~~~~vwt~~AH-d~~IS 377 (463)
T KOG0270|consen 307 --YDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD-----DGTVYYFDIRNPGKPVWTLKAH-DDEIS 377 (463)
T ss_pred --ccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC-----CceEEeeecCCCCCceeEEEec-cCCcc
Confidence 469999999743 2111111 256778999999988776666544 3578888842221233555554 56899
Q ss_pred EEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEec
Q 000992 277 LLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 277 ~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~ 340 (1196)
.|++|+.-. +|++++.|+ +|+||++..-.-....+-.+.- ++ .+++..|+-+..++++..
T Consensus 378 gl~~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~~v~~~~~~~-~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDK---VVKLWKFDVDSPKSVKEHSFKL-GRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred eEEecCCCCcceeeccccc---eEEEEeecCCCCcccccccccc-cceeecccCCCcceEEEecCc
Confidence 999998654 688888998 9999998753211111111100 12 445666766665555443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-10 Score=130.72 Aligned_cols=273 Identities=15% Similarity=0.138 Sum_probs=175.3
Q ss_pred EEECC---CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccccc
Q 000992 122 ISPSP---DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1196)
Q Consensus 122 ~awSP---Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~ 198 (1196)
..|++ ....||.+.+||.|.+.+.. .+....+. .+. -.|..|.+.|..+.|-| |+... |+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~-----~~~fr~ee-~~l---k~~~aH~nAifDl~wap-ge~~l-Vsa----- 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTK-----SIVFRLEE-RQL---KKPLAHKNAIFDLKWAP-GESLL-VSA----- 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecch-----hhhcchhh-hhh---cccccccceeEeeccCC-CceeE-EEc-----
Confidence 56655 35689999999999886421 11111110 000 12337899999999999 77655 332
Q ss_pred CCCCEEEEEECCCCcEEEE--eccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC--CCeeEE-EEE------
Q 000992 199 KLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--NGLERS-SFD------ 266 (1196)
Q Consensus 199 ~~d~~irVWd~~~G~l~~~--~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~--nGl~~~-~f~------ 266 (1196)
.+|.++|+||..++.+.-. .-+|.+.+.+++|+|... .+++|++|+ .|.+|+. |+..+- +|.
T Consensus 119 sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg------~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDG------EILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCC------cEEEEEEeccchhhHHHHhhhhhcc
Confidence 2689999999988888876 678999999999999765 678888864 6999983 331000 000
Q ss_pred --------------ec--cCCCCcEEE---EEEccCCCeeEEEEc-cCCcceEEEEEec-CCEEEEEEEEE---EecC--
Q 000992 267 --------------IN--EQIDSTVEL---LKWNCMSDLLAAVVR-FEEYDSVKICFFS-NNHWYLKYEIR---YLRR-- 320 (1196)
Q Consensus 267 --------------l~--~~~~~~V~~---laWSpDg~~LAs~~~-d~~~~~V~lW~~~-n~~wylkq~l~---~~~~-- 320 (1196)
++ .-+...|.+ +-+.-|...||+++. |+ +|++||+. ||.-|..+.+. ++..
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~---~iKVWDLRk~~~~~r~ep~~~~~~~t~sk 269 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADS---TIKVWDLRKNYTAYRQEPRGSDKYPTHSK 269 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCc---ceEEEeecccccccccCCCcccCccCccc
Confidence 00 001234555 667788889999888 77 99999976 55555443332 1111
Q ss_pred -C--cEEEEEccCCCceEEEEecCCcEEEEEEEE-eee--------------------cCCCeeEEEEcCCEEEEeeccc
Q 000992 321 -D--GIRFMWHPTKPLQLICWTLDGQITTYNFIW-TTA--------------------VMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 321 -~--~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~-~~~--------------------~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
. .+.+.-|.-|.+ |...+.|+.++.|+..- ++. +++..++...-....++|-+..
T Consensus 270 rs~G~~nL~lDssGt~-L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 270 RSVGQVNLILDSSGTY-LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred ceeeeEEEEecCCCCe-EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 1 256666766676 44455588887665421 000 4444444433344567777766
Q ss_pred cCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 377 SLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 377 ~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...||-.. +.|.-.|.+|.|.|... .-+|+.+.|.++++|++..
T Consensus 349 ~e~~~~~l---~Ght~eVt~V~w~pS~~-t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 349 PEAPPALL---LGHTREVTTVRWLPSAT-TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccCChhhh---hCcceEEEEEeeccccC-CCceeeccCcceEEEeccC
Confidence 55554432 45777899999999873 4567779999999999954
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-08 Score=113.57 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=165.8
Q ss_pred EEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----CCcEEEEECC
Q 000992 34 RLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----SGLLLLHSVD 105 (1196)
Q Consensus 34 ~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~----dG~I~lw~~~ 105 (1196)
++|+++-+ ++|+.++.+ ...+++... .. +.....+..++++|+++.|.++.+ +|.|..|..+
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d--~~~g~l~~~------~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~ 70 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFD--EETGTLTLV------QT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRID 70 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEE--TTTTEEEEE------EE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEc--CCCCCceEe------ee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEEC
Confidence 35666544 578888773 333322211 00 011356788999999999999987 4688887664
Q ss_pred C--CeEEEeeeec---CcEEEEEECCCCCEEEEEe-CCceEEEEeccC--ceeeeeecccccCccccccCccccCCCCeE
Q 000992 106 G--NATEVVGRVE---GGVRFISPSPDGDLLGVTT-GFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 106 ~--~~~e~vg~~~---~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~--d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
. +.++.++... .+-..++.+|||++|.++. .+|+|.++..+- .+.............+....|. .....
T Consensus 71 ~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~---~~h~H 147 (345)
T PF10282_consen 71 PDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE---GPHPH 147 (345)
T ss_dssp TTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS---STCEE
T ss_pred CCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccc---cccce
Confidence 3 6665444332 3456799999999999997 588888775332 1111111100000000000111 12346
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCc--EEE----EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQA----SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~----~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
++.|+|||+++. +... +...|++|+.+.+. +.. ......| -+.++|+|||+++...... ...
T Consensus 148 ~v~~~pdg~~v~-v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e~-----s~~ 215 (345)
T PF10282_consen 148 QVVFSPDGRFVY-VPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNEL-----SNT 215 (345)
T ss_dssp EEEE-TTSSEEE-EEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEETT-----TTE
T ss_pred eEEECCCCCEEE-EEec-----CCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecCC-----CCc
Confidence 899999999988 6543 34578898875443 533 1222333 4899999999998887765 357
Q ss_pred EEEEeCC---CeeEEEEEec-c----CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec--CCEEEEEEEEEEecCC
Q 000992 252 IVFYERN---GLERSSFDIN-E----QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRYLRRD 321 (1196)
Q Consensus 252 V~~~e~n---Gl~~~~f~l~-~----~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~--n~~wylkq~l~~~~~~ 321 (1196)
|..|+.+ |.......+. . ........|+.||||++|-++.... ++|-++++. +....+.+.+......
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l~~~~~~~~~G~~ 293 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTLTLVQTVPTGGKF 293 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTEEEEEEEEESSSS
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCceEEEEEEeCCCCC
Confidence 8877754 3222111222 1 1123588999999999998877653 589999983 3443344444442233
Q ss_pred cEEEEEccCCCceEEEEec-CCcEE
Q 000992 322 GIRFMWHPTKPLQLICWTL-DGQIT 345 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~-~g~~~ 345 (1196)
+..+.++|++.. |.+.++ ++.+.
T Consensus 294 Pr~~~~s~~g~~-l~Va~~~s~~v~ 317 (345)
T PF10282_consen 294 PRHFAFSPDGRY-LYVANQDSNTVS 317 (345)
T ss_dssp EEEEEE-TTSSE-EEEEETTTTEEE
T ss_pred ccEEEEeCCCCE-EEEEecCCCeEE
Confidence 588999999876 555554 44443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-10 Score=126.38 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=163.3
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeecccc---------ccccccCCC-CCCEEEEEEccCC-CEEEEEECCCcE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISA---------EIEHIDLEP-GDSITAFDYLMEK-EALIVGTSSGLL 99 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~-~~~v~~v~~spd~-~~La~as~dG~I 99 (1196)
-++.+.+++=+..|-.||+. ...... ...+|-+ +-+++...- .+.|.+++|.-.- ..||+||+|.||
T Consensus 191 ~gNyvAiGtmdp~IeIWDLD-I~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLD-IVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccc-cccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 46788888889999999984 222110 0001110 001110000 3456777776654 589999999999
Q ss_pred EEEECCCCeEE-EeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATE-VVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e-~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
++||++++++. +..+|.+.|.+++|.|. .+.|.+||-|++|.+-+ |+- .-....+. .++.|
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~-~~s~~~wk---------------~~g~V 332 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP-SNSGKEWK---------------FDGEV 332 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc-cccCceEE---------------eccce
Confidence 99999998875 66778899999999987 67899999999998854 210 00111111 23567
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~ 254 (1196)
-.++|.|-......+++ .|++++=+|.+ .|++..+...|++.|.+|++++.- +++++++.+ ..|++
T Consensus 333 Ekv~w~~~se~~f~~~t------ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d------~~Vkl 400 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVST------DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD------KVVKL 400 (463)
T ss_pred EEEEecCCCceeEEEec------CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc------ceEEE
Confidence 89999998876552443 57999999964 679999999999999999999975 467777775 46999
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCE
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|...+..-+...-+.-.-+...+.++.|+-- +||.|+... .+++|++.+++
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~---~~~vwd~~~~~ 452 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA---VLRVWDIFTNS 452 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCccc---eEEEeecccCh
Confidence 9854432211000000012344566666644 677777776 89999987754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-09 Score=125.82 Aligned_cols=285 Identities=15% Similarity=0.161 Sum_probs=185.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccc-ccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQ-NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+++.++.+.++.+.++..|++|..|.- +. .....+... +-+| .+.|.+++||+||..|.+|+.-|.+.
T Consensus 207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d--~~~~~~~~t~t~----lHWH----~~~V~~L~fS~~G~~LlSGG~E~VLv 276 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGDSDGRILVWRD--FGSSDDSETCTL----LHWH----HDEVNSLSFSSDGAYLLSGGREGVLV 276 (792)
T ss_pred cceeEEeccccceEEEeccCCcEEEEec--cccccccccceE----EEec----ccccceeEEecCCceEeecccceEEE
Confidence 3577888999999998888999999987 33 121112211 5566 46899999999999999999999999
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccc-cCccccCCCCeEEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~i 179 (1196)
+|...|++-+.+....+.|..+.|||||++.++..+|+.|.+.... +......+... ++.+ ++. ....+-...+
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~-dl~~k~tIsgi---~~~~~~~k-~~~~~l~t~~ 351 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS-DLEIKSTISGI---KPPTPSTK-TRPQSLTTGV 351 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc-chhhhhhccCc---cCCCcccc-ccccccceeE
Confidence 9999998766677777889999999999999999999999876431 11111111100 0000 000 0011233567
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-----cCCC------ceeEEEEcCCCCeEEEEecCCC---
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-----LKAF------MGAVLEWMPSGANIAAVYDRKS--- 245 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-----~~~~------~v~slawsPdG~~IAs~s~d~~--- 245 (1196)
+..|--..++ ..+ ..+.|++||..+-..++.++ .+++ .+.+++.+-.|+++|+......
T Consensus 352 ~idpr~~~~v-ln~------~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 352 SIDPRTNSLV-LNG------HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred EEcCCCCcee-ecC------CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 7777444444 343 35899999987766665442 1222 2477888888999999854211
Q ss_pred -CCCCCeEEEEeCCCeeEEEEEec----cCCCCcEEE-EEEccCCC-eeEEEEccCCcceEEEEEec--------CCEEE
Q 000992 246 -ENKCPSIVFYERNGLERSSFDIN----EQIDSTVEL-LKWNCMSD-LLAAVVRFEEYDSVKICFFS--------NNHWY 310 (1196)
Q Consensus 246 -~~~~~~V~~~e~nGl~~~~f~l~----~~~~~~V~~-laWSpDg~-~LAs~~~d~~~~~V~lW~~~--------n~~wy 310 (1196)
.+....++||-.|+... .|.|. .||+..+.. +..+|-.. ..++++.|+ .+++|-.. .--|.
T Consensus 425 ~~~~e~~LKFW~~n~~~k-t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg---~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSK-TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG---DFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred ccCceEEEEEEEEcCCcc-eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC---eEEEEEEecccccCcCccceE
Confidence 12246799999987654 35554 566554444 44455444 788999998 99999983 22355
Q ss_pred EEEEEEEecCCcEEEEEccCCC
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKP 332 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~ 332 (1196)
++..=.|+........|+.||.
T Consensus 501 c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred EeeeeccccCcccchhhcCCCc
Confidence 4433334322235667777763
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.6e-09 Score=120.17 Aligned_cols=290 Identities=14% Similarity=0.149 Sum_probs=187.1
Q ss_pred EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc--EEEEECCCC--eEE
Q 000992 35 LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL--LLLHSVDGN--ATE 110 (1196)
Q Consensus 35 l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~--I~lw~~~~~--~~e 110 (1196)
+-++|....+..||.+..... ..+..+.- ...+.+|.|..... |++++..|+ |.+|..++. ++.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~---------~~~~~~t~--~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK---------SEYVHQTA--EPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVP 72 (673)
T ss_pred eeeeccCCceEEeecccccCc---------cccccCCC--CCcceeeeccccce-EEEeecCCceeEEEecccCCCCccc
Confidence 445554344899998421111 11222222 23599999998765 777766555 677887764 344
Q ss_pred Eeeeec----CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 111 VVGRVE----GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 111 ~vg~~~----~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
.++... -.|.|+++| .++.+++..++|+||+- ......... ++|.+.|..+.+.-...
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl----~~kl~hr~l-----------kdh~stvt~v~YN~~De 134 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDL----RAKLIHRFL-----------KDHQSTVTYVDYNNTDE 134 (673)
T ss_pred eeeccccchHHHHhhhhcc---eeeeccCcCceeeehhh----HHHHHhhhc-----------cCCcceeEEEEecCCcc
Confidence 444322 236667776 88999999999988752 222222111 25667889999999999
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
|||+ .+. .+-|-|-+..++..-.++....| .+.-+.|||.-+.+.+.-.| +..|.+|+.+|.... |
T Consensus 135 yiAs-vs~------gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd-----~G~VtlwDv~g~sp~-~ 201 (673)
T KOG4378|consen 135 YIAS-VSD------GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD-----KGAVTLWDVQGMSPI-F 201 (673)
T ss_pred eeEE-ecc------CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc-----CCeEEEEeccCCCcc-c
Confidence 9994 543 25688888867665555543323 45689999998865544333 357999999986532 2
Q ss_pred EeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEecCCc
Q 000992 266 DINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
.....|......|+|||-.+ +|++.+.|. .|.+||..... +...+.+ ..+ ..++|.++|.. |..++..|.
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~yD~~s~~--s~~~l~y--~~Plstvaf~~~G~~-L~aG~s~G~ 273 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIYDIRSQA--STDRLTY--SHPLSTVAFSECGTY-LCAGNSKGE 273 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccc---eEEEeeccccc--ccceeee--cCCcceeeecCCceE-EEeecCCce
Confidence 22233456678999999665 678888888 89999987532 2334444 233 77999998865 888888888
Q ss_pred EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCC
Q 000992 344 ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKS 403 (1196)
Q Consensus 344 ~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg 403 (1196)
+..|+..- .|.|.... -.|...|.+|||-|..
T Consensus 274 ~i~YD~R~---------------------------~k~Pv~v~-sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRS---------------------------TKAPVAVR-SAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEeccc---------------------------CCCCceEe-eecccceeEEEeeecc
Confidence 87665431 13343321 1377789999999975
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=111.75 Aligned_cols=250 Identities=16% Similarity=0.178 Sum_probs=157.1
Q ss_pred ceeEEeeecCCCEEEEEeCC----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CC
Q 000992 22 ILQFSALDIEQNRLFFASSA----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~d 96 (1196)
.+..+++|+++..||++++. +.|..+..+..++..+ .+.+.+. .+..+..++++|+++.|.++. .+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~-~~~~~~~--------~g~~p~~i~~~~~g~~l~vany~~ 108 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT-LLNSVPS--------GGSSPCHIAVDPDGRFLYVANYGG 108 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE-EEEEEEE--------SSSCEEEEEECTTSSEEEEEETTT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE-Eeeeecc--------CCCCcEEEEEecCCCEEEEEEccC
Confidence 67789999999999999773 4677777621212221 1221111 246788999999999999886 58
Q ss_pred CcEEEEECCC-CeEE-E---e---ee-------ecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCce--eee---eec
Q 000992 97 GLLLLHSVDG-NATE-V---V---GR-------VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDL--LYE---NPL 155 (1196)
Q Consensus 97 G~I~lw~~~~-~~~e-~---v---g~-------~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~--~~~---~~l 155 (1196)
|+|.+++++. +.+. . + |. ......++.|+|||+.|.++. +...|.++..+-+. +.. ..+
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 9999999875 4442 1 1 10 123478999999999988774 34467666532211 211 111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEEEe--c----cCC--Cce
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQASS--E----LKA--FMG 225 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~~~--e----~~~--~~v 225 (1196)
. ...+-..+.|+|||+++- +.. ...++|.+++.. +|.+.... . ... ...
T Consensus 189 ~---------------~G~GPRh~~f~pdg~~~Y-v~~-----e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 189 P---------------PGSGPRHLAFSPDGKYAY-VVN-----ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp S---------------TTSSEEEEEE-TTSSEEE-EEE-----TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred c---------------cCCCCcEEEEcCCcCEEE-Eec-----CCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 1 113447899999999886 543 145788888875 56543321 1 111 146
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
..|+++|||++|.++.+. ...|.+|+.+ |.....-.++.. ....+.++++|||++|+++..+. +.|.+|
T Consensus 248 ~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s--~~v~vf 319 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDS--NTVSVF 319 (345)
T ss_dssp EEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTT--TEEEEE
T ss_pred eeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCC--CeEEEE
Confidence 889999999999888775 3589999863 433221122211 23478999999999999998765 378888
Q ss_pred Eec--CCEE
Q 000992 303 FFS--NNHW 309 (1196)
Q Consensus 303 ~~~--n~~w 309 (1196)
+++ +..+
T Consensus 320 ~~d~~tG~l 328 (345)
T PF10282_consen 320 DIDPDTGKL 328 (345)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCcE
Confidence 774 5554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-09 Score=116.45 Aligned_cols=196 Identities=14% Similarity=0.156 Sum_probs=124.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceee---ccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKT---AISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.+.+++|.|-+...+++.-..+|..|..+ .+....-++. +.+..+..++= ...|++++|.+||-.|++++ .|.
T Consensus 142 nvtclawRPlsaselavgCr~gIciW~~s-~tln~~r~~~~~s~~~~qvl~~pg--h~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 142 NVTCLAWRPLSASELAVGCRAGICIWSDS-RTLNANRNIRMMSTHHLQVLQDPG--HNPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred ceeEEEeccCCcceeeeeecceeEEEEcC-cccccccccccccccchhheeCCC--CceeeEEEEcCCCCEEeecccCcc
Confidence 79999999998777776665669999985 2322211111 11111111110 25799999999999999886 456
Q ss_pred cEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|+|||++++.. .+.-.--+|+.-+.|||||..|..++-|+...+|+ +.|.. |... . ..+
T Consensus 219 si~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~--erw~-l--------------gsg 281 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK--ERWI-L--------------GSG 281 (445)
T ss_pred eEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee--ccee-c--------------cCC
Confidence 799999998653 33322257899999999999999999999999994 44432 1111 1 113
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEE-EECCCCcEE-----------E------Eecc---CCCceeEEEEcCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKV-WERDSGTLQ-----------A------SSEL---KAFMGAVLEWMPS 233 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irV-Wd~~~G~l~-----------~------~~e~---~~~~v~slawsPd 233 (1196)
.+..-.|+|+|.+|..+.+.. .+..++ ++.+.+... . +..+ .-|...+++|-|.
T Consensus 282 rvqtacWspcGsfLLf~~sgs-----p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps 356 (445)
T KOG2139|consen 282 RVQTACWSPCGSFLLFACSGS-----PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS 356 (445)
T ss_pred ceeeeeecCCCCEEEEEEcCC-----ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC
Confidence 678899999999876333311 111111 011111111 0 0011 2355689999999
Q ss_pred CCeEEEEec
Q 000992 234 GANIAAVYD 242 (1196)
Q Consensus 234 G~~IAs~s~ 242 (1196)
|+++|+.-.
T Consensus 357 GeyLav~fK 365 (445)
T KOG2139|consen 357 GEYLAVIFK 365 (445)
T ss_pred CCEEEEEEc
Confidence 999998744
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-09 Score=126.16 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=124.8
Q ss_pred CCEEEEEEccCCCE-EEEEECC---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-C--ceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEA-LIVGTSS---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-F--GQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~-La~as~d---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d--~tV~l~~~~~d 148 (1196)
+...+-.|||||+. ++..+.. .+|.++|+.+++.+.+....+.+.+.+|||||+.||.... + ..|.+++....
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 35778999999985 6654443 4688899999887755545666778999999998887643 3 34555442221
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sl 228 (1196)
.. ..+... ........|+|||+.++.++.. .+...|.+.|..+|+....... +. ...
T Consensus 268 ~~--~~LT~~--------------~~~d~~p~~SPDG~~I~F~Sdr----~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~ 324 (419)
T PRK04043 268 TL--TQITNY--------------PGIDVNGNFVEDDKRIVFVSDR----LGYPNIFMKKLNSGSVEQVVFH--GK-NNS 324 (419)
T ss_pred cE--EEcccC--------------CCccCccEECCCCCEEEEEECC----CCCceEEEEECCCCCeEeCccC--CC-cCc
Confidence 11 111111 1112456899999999854432 1234788889977877554332 11 134
Q ss_pred EEcCCCCeEEEEecCCCCC---CCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 229 EWMPSGANIAAVYDRKSEN---KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~---~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|||||+.||..+.....+ ....|.+.+..|-.... |... ......+|||||+.|+.....+....+.+.++.
T Consensus 325 ~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~--LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 325 SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR--LTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE--CCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 8999999999887643211 12467777755433222 2211 223368999999999998776533234444443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-10 Score=127.54 Aligned_cols=136 Identities=23% Similarity=0.362 Sum_probs=101.9
Q ss_pred CCCEEEEEEccCCCEE-EEEECCCcEEEEECC---------------CCeEEE---e-----------eeecCcEEEEEE
Q 000992 75 GDSITAFDYLMEKEAL-IVGTSSGLLLLHSVD---------------GNATEV---V-----------GRVEGGVRFISP 124 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~L-a~as~dG~I~lw~~~---------------~~~~e~---v-----------g~~~~~I~~~aw 124 (1196)
...|++|.|.|.++.+ ..+-.+|...+||.. +....+ . ..-+++|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4689999999977544 456789999999652 111110 0 112468999999
Q ss_pred CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 125 SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 125 SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
||||+.||++|.||.++|++ |+.. .-+. . ++.--++..+++|||||+|+| +++ +|-.|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~--fdt~--eLlg-~----------mkSYFGGLLCvcWSPDGKyIv-tGG------EDDLV 356 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFD--FDTQ--ELLG-V----------MKSYFGGLLCVCWSPDGKYIV-TGG------EDDLV 356 (636)
T ss_pred cCCCceEEEEecCceEEEee--ccHH--HHHH-H----------HHhhccceEEEEEcCCccEEE-ecC------CcceE
Confidence 99999999999999998864 3321 1110 0 111125678999999999999 676 56799
Q ss_pred EEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 205 KVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.||+..+++++.-.++|..||..++|-|
T Consensus 357 tVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999998
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=125.44 Aligned_cols=258 Identities=16% Similarity=0.096 Sum_probs=159.2
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccc-cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
...+-+....+||.+.+++.|.+.|.. ....+ +.+. |+. +....+.|.++.|-|-...|++++.|.+|+.|
T Consensus 56 sFs~~~n~eHiLavadE~G~i~l~dt~--~~~fr-----~ee~~lk~-~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 56 SFSAAPNKEHILAVADEDGGIILFDTK--SIVFR-----LEERQLKK-PLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred cccCCCCccceEEEecCCCceeeecch--hhhcc-----hhhhhhcc-cccccceeEeeccCCCceeEEEccCCceeeee
Confidence 334445567889999999999999873 22211 0000 221 12224689999999966688999999999999
Q ss_pred ECCCCeEE----EeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCce---eeeeeccccc-C-c--cccc-----
Q 000992 103 SVDGNATE----VVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDL---LYENPLEELA-E-G--FDVH----- 165 (1196)
Q Consensus 103 ~~~~~~~e----~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~---~~~~~l~~~~-~-~--~~Vs----- 165 (1196)
|+.+.++. .+| |.+.|.+++|.|+.. .+++|+.||.|.||+..-+. ..+....... + + .+..
T Consensus 128 dvk~s~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 128 DVKTSRLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeccceeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 99986653 456 589999999999865 56778889999999632111 1111000000 0 0 1111
Q ss_pred cCccccCCCCeEE---EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-----------CCceeEEEEc
Q 000992 166 EPELSSSFSFKSP---ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----------AFMGAVLEWM 231 (1196)
Q Consensus 166 ~tqf~~~~~~v~~---isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-----------~~~v~slaws 231 (1196)
-..++.+...+.+ +-+.-|-..|| +++. .|++|||||..........++. ...+.++.--
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~tla-Saga-----~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDESTLA-SAGA-----ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred ccccccccCceeeeeEEEEEeccceee-eccC-----CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 1112234444444 77778999999 4552 4799999998554333332221 1123556666
Q ss_pred CCCCeE-EEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCC--CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 232 PSGANI-AAVYDRKSENKCPSIVFYERNGLERSS-FDINEQI--DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 232 PdG~~I-As~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~--~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
..|.++ |++. | ..|-+|+.-++..+- +...+.. ...| .=.-||||..|++++.|. ...+|.+++.
T Consensus 281 ssGt~L~AsCt-D------~sIy~ynm~s~s~sP~~~~sg~~~~sf~v-ks~lSpd~~~l~SgSsd~---~ayiw~vs~~ 349 (720)
T KOG0321|consen 281 SSGTYLFASCT-D------NSIYFYNMRSLSISPVAEFSGKLNSSFYV-KSELSPDDCSLLSGSSDE---QAYIWVVSSP 349 (720)
T ss_pred CCCCeEEEEec-C------CcEEEEeccccCcCchhhccCcccceeee-eeecCCCCceEeccCCCc---ceeeeeecCc
Confidence 667754 6665 4 359999865543321 1111111 1112 234799999999999999 7999998874
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-07 Score=106.09 Aligned_cols=306 Identities=17% Similarity=0.145 Sum_probs=183.6
Q ss_pred EEEEEeC----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC---CcEEEE--EC
Q 000992 34 RLFFASS----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS---GLLLLH--SV 104 (1196)
Q Consensus 34 ~l~~~s~----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d---G~I~lw--~~ 104 (1196)
.+|+++- +.+|+.|++ .++.++..... +... .+.++-++|+|+++.|-++-.+ |.|.-| |.
T Consensus 4 ~~YiGtyT~~~s~gI~v~~l--d~~~g~l~~~~----~v~~----~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~ 73 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNL--DTKTGELSLLQ----LVAE----LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP 73 (346)
T ss_pred EEEEeeecccCCCceEEEEE--eCcccccchhh----hccc----cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC
Confidence 4677743 557999999 55544322211 1111 3578999999999999877655 667664 44
Q ss_pred CCCeEEEeeee---cCcEEEEEECCCCCEEEEEeC-CceEEEEecc--Cceeee--eecccccCccccccCccccCCCCe
Q 000992 105 DGNATEVVGRV---EGGVRFISPSPDGDLLGVTTG-FGQILVMTHD--WDLLYE--NPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 105 ~~~~~e~vg~~---~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~--~d~~~~--~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
+.|++..++.. ..+-.-++.++||+.|.++.- .|.|.+.-.. +.+..- ...++.. + ..+.|-++| +
T Consensus 74 ~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-~--p~~rQ~~~h---~ 147 (346)
T COG2706 74 DDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-G--PHERQESPH---V 147 (346)
T ss_pred CCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-C--CCccccCCc---c
Confidence 54676644432 123378999999999999973 4566554221 111110 0011100 0 012222222 4
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
-..-+.|||+|++ +-.. +.-.|.+|+.++|.+...- .+..|. +.|+|+|+|++.-..... ..+|
T Consensus 148 H~a~~tP~~~~l~-v~DL-----G~Dri~~y~~~dg~L~~~~~~~v~~G~GP-RHi~FHpn~k~aY~v~EL-----~stV 215 (346)
T COG2706 148 HSANFTPDGRYLV-VPDL-----GTDRIFLYDLDDGKLTPADPAEVKPGAGP-RHIVFHPNGKYAYLVNEL-----NSTV 215 (346)
T ss_pred ceeeeCCCCCEEE-Eeec-----CCceEEEEEcccCccccccccccCCCCCc-ceEEEcCCCcEEEEEecc-----CCEE
Confidence 6788999999998 4443 2346889999899877643 333444 899999999998888776 3589
Q ss_pred EEEeCCCeeEEEEE-------ecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CC
Q 000992 253 VFYERNGLERSSFD-------INE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RD 321 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~-------l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~ 321 (1196)
.+|+-|+. .++|. ++. ++..+.-+|..||||++|-+.-.. .+.|-++.+....-.|.-.-..+. ..
T Consensus 216 ~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg--~dsI~~f~V~~~~g~L~~~~~~~teg~~ 292 (346)
T COG2706 216 DVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG--HDSIAVFSVDPDGGKLELVGITPTEGQF 292 (346)
T ss_pred EEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCC--CCeEEEEEEcCCCCEEEEEEEeccCCcC
Confidence 99987764 34432 221 234578899999999999876443 346777777643211111101111 11
Q ss_pred cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc-cCCCCCcee
Q 000992 322 GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL-SLMPPPMYL 385 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~-~~vpppm~~ 385 (1196)
+..+.++|.+.. |.+..++ +|.-.+..+|..+=+|+.+.. ..+|.|+|.
T Consensus 293 PR~F~i~~~g~~-Liaa~q~--------------sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv 342 (346)
T COG2706 293 PRDFNINPSGRF-LIAANQK--------------SDNITVFERDKETGRLTLLGRYAVVPEPVCV 342 (346)
T ss_pred CccceeCCCCCE-EEEEccC--------------CCcEEEEEEcCCCceEEecccccCCCCcEEE
Confidence 256667776655 3333332 233455667777777776654 677888875
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-08 Score=106.28 Aligned_cols=239 Identities=11% Similarity=0.068 Sum_probs=150.5
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC-----
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG----- 97 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG----- 97 (1196)
....+|+-|..-..++.+++ ...++.+-+.+..+-+- .+. +-.++-| +--.+.||.++..+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~--~~~---------G~~~veM--LfR~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF--IDG---------GFKIVEM--LFRSNYLALVGGGSRPKYP 73 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc--ccC---------chhhhhH--hhhhceEEEecCCCCCCCC
Confidence 34477888777777777766 44444421333221000 000 1122222 33456777665433
Q ss_pred --cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 98 --LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 --~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.|+|||-.-.++-+.-.....|.++.+++| .|+++.. ++|.+|+-.-++..-..+.+. ....+
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n~k~l~~~et~------------~NPkG 138 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDNPKLLHVIETR------------SNPKG 138 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEec-CeEEEEEcCCChhheeeeecc------------cCCCc
Confidence 699999443332222235788999999988 6666665 478898743233211111111 11234
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.++++=.-+-.+|| .-+. .-+.|+|-|...-+. -..-..|++.+.+++.+-+|.+||++|.+++ -|+
T Consensus 139 lC~~~~~~~k~~La-fPg~-----k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT-----LIR 207 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLA-FPGF-----KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGT-----LIR 207 (346)
T ss_pred eEeecCCCCceEEE-cCCC-----ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcE-----EEE
Confidence 56666555666777 4443 347899987733222 2455779999999999999999999998754 688
Q ss_pred EEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 254 FYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 254 ~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|+ .+|....||. ++.....|.+|+||||++.||+++..+ ||.++.+.
T Consensus 208 IFdt~~g~~l~E~R-RG~d~A~iy~iaFSp~~s~LavsSdKg---TlHiF~l~ 256 (346)
T KOG2111|consen 208 IFDTEDGTLLQELR-RGVDRADIYCIAFSPNSSWLAVSSDKG---TLHIFSLR 256 (346)
T ss_pred EEEcCCCcEeeeee-cCCchheEEEEEeCCCccEEEEEcCCC---eEEEEEee
Confidence 998 5787777653 233456799999999999999999998 99999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-09 Score=120.63 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=150.5
Q ss_pred CCCEEEEEEccCCC--EEEEEECCCcEEEEECCCCe-----EEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEecc
Q 000992 75 GDSITAFDYLMEKE--ALIVGTSSGLLLLHSVDGNA-----TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 75 ~~~v~~v~~spd~~--~La~as~dG~I~lw~~~~~~-----~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~ 146 (1196)
..+|.+++|+|--. .+|+|...|+|-+||..+.+ +.....|.+.|.++.|||-. ..+.+.|-||+|++++-.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 46899999999764 77888899999999996421 22333467889999999975 457777899999987533
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCce
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMG 225 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v 225 (1196)
... .+.-+...++. ....+..|+.+.+.+. .+. .=+.+-+||+.++.. ....+-|..-|
T Consensus 266 ~~i-~e~v~s~~~d~------------~~fs~~d~~~e~~~vl-~~~------~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 266 GNI-SEEVLSLDTDN------------IWFSSLDFSAESRSVL-FGD------NVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred chh-hHHHhhcCccc------------eeeeeccccCCCccEE-Eee------cccceEEEEeecCCccchhhhhhhccc
Confidence 221 11111111111 1335566666666555 232 124789999876543 33444566789
Q ss_pred eEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEE-E-EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERS-S-FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~-~-f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
.+++++|--. +||+++-| +++++||.--++-. + |.-..+|.-.|.+..|||+|-.|++.+.|. .|+||
T Consensus 326 ~sv~~NP~~p~~laT~s~D------~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~ 396 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLD------QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVF 396 (498)
T ss_pred ceeecCCCCchheeecccC------cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEe
Confidence 9999999764 78999886 46999994322211 1 111134556799999999998899999998 89999
Q ss_pred EecCC-EEE-EEEEEEEecCC-----cEEEEEccCCCceEEEEe
Q 000992 303 FFSNN-HWY-LKYEIRYLRRD-----GIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 303 ~~~n~-~wy-lkq~l~~~~~~-----~~~v~Wsp~~~~~L~~~~ 339 (1196)
+.+-. .|. .+.+|.-.... +....|+|+... +.++.
T Consensus 397 dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~l-i~vg~ 439 (498)
T KOG4328|consen 397 DSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNL-IVVGR 439 (498)
T ss_pred ecccccccCCccceeeccCcccccccchhheeCCCccE-EEEec
Confidence 98510 111 12233321111 144679996653 44443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=121.83 Aligned_cols=246 Identities=12% Similarity=0.115 Sum_probs=158.1
Q ss_pred eeecC-CCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCC-CEEEEEECCCcEEEEE
Q 000992 27 ALDIE-QNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLLLHS 103 (1196)
Q Consensus 27 ~~d~~-~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~-~~La~as~dG~I~lw~ 103 (1196)
++|.. ++-+..+.. -+.|+..|+ .+++.. ..+.+| ++.|+.|.+.|+. +.|.++|.|..|+|||
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~--~~~~~~-------~~~~gh----G~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDV--VSGQCS-------KNYRGH----GGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEec--chhhhc-------cceecc----CccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 45555 355555554 445667777 343321 115666 6789999999987 6778999999999999
Q ss_pred CCCCeEE-Eee---eecCcEEEEEECCCCCEEEEEeCCceEEEEecc---Cceeeeee--ccccc-Cccccc-cCccc--
Q 000992 104 VDGNATE-VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD---WDLLYENP--LEELA-EGFDVH-EPELS-- 170 (1196)
Q Consensus 104 ~~~~~~e-~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~---~d~~~~~~--l~~~~-~~~~Vs-~tqf~-- 170 (1196)
.++..+- +.| .|.+.|.++.||+||..+|+++.|.++++|... +...-|.. ..+.. .....+ .++|.
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 9998764 443 467899999999999999999999999999632 21111111 11111 111111 12222
Q ss_pred ----cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE----------------eccCCCcee--EE
Q 000992 171 ----SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----------------SELKAFMGA--VL 228 (1196)
Q Consensus 171 ----~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~----------------~e~~~~~v~--sl 228 (1196)
-|.+.|-++.|-+ .|+. +-| .++.|-.|-+ |++... ++-....++ -.
T Consensus 245 st~diHrnyVDCvrw~g--d~il-Sks------cenaI~~w~p--gkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWFG--DFIL-SKS------CENAIVCWKP--GKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred cccccccchHHHHHHHh--hhee-ecc------cCceEEEEec--chhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 3667788899987 4555 222 2468888977 222111 111112233 44
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+|.|-+++||.|.. .++|.+||.. ...+..-++. ......|...+||-||.+|...++|+ +|.-|+.-
T Consensus 314 ~~d~~~~~la~gnq------~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~---~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQKMLALGNQ------SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG---TVWRWDRV 383 (385)
T ss_pred eecHHHHHHhhccC------CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC---cEEEEEee
Confidence 67788999998865 3579999953 2222211222 11235699999999999999999999 89888853
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-09 Score=112.66 Aligned_cols=201 Identities=14% Similarity=0.114 Sum_probs=136.1
Q ss_pred CCCEEEEEEccCC-CEEEEEECC-------CcEEEEECCC-------CeEEEeeee----cCcEEEEEECCCCCEEEEEe
Q 000992 75 GDSITAFDYLMEK-EALIVGTSS-------GLLLLHSVDG-------NATEVVGRV----EGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~d-------G~I~lw~~~~-------~~~e~vg~~----~~~I~~~awSPDg~~LA~~s 135 (1196)
.+.|..++-+|-. +.|++...+ -.+.||.... ..+|++.+. -+.|.|+.|-|++..||+..
T Consensus 63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence 4789999999954 566666542 1256798743 124544433 36799999999999999998
Q ss_pred CCceEEEEeccCce--eeeeecccccCccccccCccccCCCCeEEEEEcc--CCceEEEeeccccccCCCCEEEEEECCC
Q 000992 136 GFGQILVMTHDWDL--LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 136 ~d~tV~l~~~~~d~--~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
|+.|.+|+.+-.+ ..+....... ++.....+=+||| ||..+| +. ++++++.||..+
T Consensus 143 -dn~i~l~~l~ess~~vaev~ss~s~-----------e~~~~ftsg~WspHHdgnqv~-tt-------~d~tl~~~D~RT 202 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIVAEVLSSESA-----------EMRHSFTSGAWSPHHDGNQVA-TT-------SDSTLQFWDLRT 202 (370)
T ss_pred -cCceEEEEcccCcchheeecccccc-----------cccceecccccCCCCccceEE-Ee-------CCCcEEEEEccc
Confidence 6789999854222 1222211111 1223457788999 999999 43 369999999876
Q ss_pred CcEEEEe-ccCCCceeEEEEcCCCCe-EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC-eeE
Q 000992 212 GTLQASS-ELKAFMGAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD-LLA 288 (1196)
Q Consensus 212 G~l~~~~-e~~~~~v~slawsPdG~~-IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LA 288 (1196)
-...... ..|...+.++.|+|+-+. ||++++| ..|+||+..-..--.+.++. +..+|+++.|+|--. ++.
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDd------gyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDD------GYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCC------ccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEE
Confidence 5554444 457778999999999875 5666665 46999994322222233443 467999999999755 556
Q ss_pred EEEccCCcceEEEEEec
Q 000992 289 AVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~ 305 (1196)
++++|. .|-||...
T Consensus 276 s~~SDs---~V~Lsca~ 289 (370)
T KOG1007|consen 276 SGGSDS---AVNLSCAS 289 (370)
T ss_pred ecCCCc---eeEEEecc
Confidence 677777 79999865
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-09 Score=121.61 Aligned_cols=218 Identities=12% Similarity=0.041 Sum_probs=155.9
Q ss_pred cCcccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 17 QSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 17 ~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
-.|| .+.+++-+++|..|+.++..++||.|.+ .++.. .++ +..| -..|+.+.|+-||..|.+|+.|
T Consensus 79 v~Pg-~v~al~s~n~G~~l~ag~i~g~lYlWel--ssG~L-L~v------~~aH----YQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 79 VLPG-PVHALASSNLGYFLLAGTISGNLYLWEL--SSGIL-LNV------LSAH----YQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred cccc-ceeeeecCCCceEEEeecccCcEEEEEe--ccccH-HHH------HHhh----ccceeEEEEeCCCcEEEecCCC
Confidence 3456 7899999999999988888999999999 67765 222 3334 2579999999999999999999
Q ss_pred CcEEEEECCC----------CeEEEeeeecCcEEEEEECCCC--CEEEEEeCCceEEEEecc-CceeeeeecccccCccc
Q 000992 97 GLLLLHSVDG----------NATEVVGRVEGGVRFISPSPDG--DLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFD 163 (1196)
Q Consensus 97 G~I~lw~~~~----------~~~e~vg~~~~~I~~~awSPDg--~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~ 163 (1196)
|.|.+|.+.. ..+....+|.-.|+.+...+-| -.|.++|.|.++++|+.. +..+..+.+.
T Consensus 145 g~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------- 217 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------- 217 (476)
T ss_pred ccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-------
Confidence 9999998631 2234667788899998887764 579999999999998743 3333333322
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE-----------------EEEECCCCcEEEEeccCCC--c
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL-----------------KVWERDSGTLQASSELKAF--M 224 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i-----------------rVWd~~~G~l~~~~e~~~~--~ 224 (1196)
..+.+++-.|-+..+- +|+. ++.| |.++. +|.....+.+|.+ .
T Consensus 218 ----------~si~av~lDpae~~~y-iGt~------~G~I~~~~~~~~~~~~~~v~~k~~~~-~~t~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 218 ----------SSIKAVALDPAERVVY-IGTE------EGKIFQNLLFKLSGQSAGVNQKGRHE-ENTQINVLVGHENESA 279 (476)
T ss_pred ----------CcceeEEEcccccEEE-ecCC------cceEEeeehhcCCccccccccccccc-ccceeeeeccccCCcc
Confidence 2346666666665544 4542 2333 33344 5566667778888 8
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEccC
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNCM 283 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpD 283 (1196)
|.+++.|-||.+++||+.| ..|.+||..-.+ .++ .+.-+.|..+.++|=
T Consensus 280 ITcLais~DgtlLlSGd~d------g~VcvWdi~S~Q----~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDED------GKVCVWDIYSKQ----CIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeEEEEecCccEEEeeCCC------CCEEEEecchHH----HHHHHhhhccccceeEeecc
Confidence 9999999999999999886 469999964322 122 112356778877664
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-08 Score=114.92 Aligned_cols=324 Identities=15% Similarity=0.132 Sum_probs=169.9
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-
Q 000992 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e- 110 (1196)
+.+|++ .+++.+-.+|. .+++. +.+++.+ ++....+.|+|||+.+.+++.||.|.++|+.++++-
T Consensus 6 ~l~~V~~~~~~~v~viD~--~t~~~---~~~i~~~--------~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG--ATNKV---VARIPTG--------GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEET--TT-SE---EEEEE-S--------TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE
T ss_pred cEEEEEecCCCEEEEEEC--CCCeE---EEEEcCC--------CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE
Confidence 445554 34667777887 55443 2222221 122456789999999999999999999999987642
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+. ....-.++++||||++|+++. .+++|.+++ +..+++..++....... ....++..|.-+|++..|
T Consensus 73 ~i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~---------~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 73 TIK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD---------GPESRVAAIVASPGRPEF 142 (369)
T ss_dssp EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT---------TS---EEEEEE-SSSSEE
T ss_pred EEe-cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc---------ccCCCceeEEecCCCCEE
Confidence 332 134568899999999999885 578999987 67788777665433200 012456788889999977
Q ss_pred EEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFD 266 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~ 266 (1196)
+ ++-- +.+.|-+-|..+.. +..+........+...|.|+|+++..+... ...|..++.. +.......
T Consensus 143 V-v~lk-----d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-----sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 143 V-VNLK-----DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-----SNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp E-EEET-----TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEE
T ss_pred E-EEEc-----cCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-----cceeEEEeeccceEEEEee
Confidence 7 5542 23566666754433 333333344455789999999987665443 2467677632 32222111
Q ss_pred e-ccCCCCcEE-------EEEEc--cCCCee-EEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 267 I-NEQIDSTVE-------LLKWN--CMSDLL-AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 267 l-~~~~~~~V~-------~laWS--pDg~~L-As~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
. +.++...+. ..-|. -.+... ...+.+. +.+|+..+ |...+++.... .+..+.-||++++ +
T Consensus 212 ~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~----v~v~d~~~--wkvv~~I~~~G-~glFi~thP~s~~-v 283 (369)
T PF02239_consen 212 TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP----VSVHDDYA--WKVVKTIPTQG-GGLFIKTHPDSRY-V 283 (369)
T ss_dssp -SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T----TT-STTTB--TSEEEEEE-SS-SS--EE--TT-SE-E
T ss_pred ccccccccccccccCCCcceEEeeccccceecccccCCc----cccchhhc--CeEEEEEECCC-CcceeecCCCCcc-E
Confidence 1 111111111 22243 334443 3333343 66677665 44556666532 3378889999874 3
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec--CCCCEEEEEEecCCCCCEEEEEEC
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK--FPTAVTEMAFYSKSSKNCLAAILS 413 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~--~~~~V~~Vafspdg~~~~lAs~~~ 413 (1196)
.+-.. ...+...+.++|-.++++. .++. ....+..+.|++||. ....|...
T Consensus 284 wvd~~-------------~~~~~~~v~viD~~tl~~~-------------~~i~~~~~~~~~h~ef~~dG~-~v~vS~~~ 336 (369)
T PF02239_consen 284 WVDTF-------------LNPDADTVQVIDKKTLKVV-------------KTITPGPGKRVVHMEFNPDGK-EVWVSVWD 336 (369)
T ss_dssp EEE-T-------------T-SSHT-EEEEECCGTEEE-------------E-HHHHHT--EEEEEE-TTSS-EEEEEEE-
T ss_pred Eeecc-------------CCCCCceEEEEECcCccee-------------EEEeccCCCcEeccEECCCCC-EEEEEEec
Confidence 22211 0112456778887765432 1121 112488999999993 33445544
Q ss_pred CC-cEEEEeCCCC
Q 000992 414 DG-CLCVVDLPAP 425 (1196)
Q Consensus 414 dg-~v~lw~~~~~ 425 (1196)
++ .|.+||..+.
T Consensus 337 ~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 337 GNGAIVVYDAKTL 349 (369)
T ss_dssp -TTEEEEEETTTT
T ss_pred CCCEEEEEECCCc
Confidence 44 8999998864
|
... |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-08 Score=110.18 Aligned_cols=290 Identities=14% Similarity=0.161 Sum_probs=183.0
Q ss_pred CEEEEEEcc--C-CCEEEEEEC----CCcEEEEEC--CCCeEEEee--eecCcEEEEEECCCCC-----EEEEEeCCceE
Q 000992 77 SITAFDYLM--E-KEALIVGTS----SGLLLLHSV--DGNATEVVG--RVEGGVRFISPSPDGD-----LLGVTTGFGQI 140 (1196)
Q Consensus 77 ~v~~v~~sp--d-~~~La~as~----dG~I~lw~~--~~~~~e~vg--~~~~~I~~~awSPDg~-----~LA~~s~d~tV 140 (1196)
.+.++.||. + +..||+||- ...|.|..+ ++++..... .|.-+++.+.|.||.+ +||+.+ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 467777873 2 357888763 345666444 344432222 3567899999999984 566543 379
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcE---EE
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTL---QA 216 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l---~~ 216 (1196)
++|....+- ........- .... .++ +...+++..|.- |-+++. ++|+| .|--|||.++|.. ..
T Consensus 124 RlWri~~ee-~~~~~~~~L-~~~k-ns~---~~aPlTSFDWne~dp~~ig-tSSiD------TTCTiWdie~~~~~~vkT 190 (364)
T KOG0290|consen 124 RLWRIGDEE-SRVELQSVL-NNNK-NSE---FCAPLTSFDWNEVDPNLIG-TSSID------TTCTIWDIETGVSGTVKT 190 (364)
T ss_pred EEEeccCcC-Cceehhhhh-ccCc-ccc---cCCcccccccccCCcceeE-eeccc------CeEEEEEEeeccccceee
Confidence 998644321 111111000 0000 111 234668889975 667787 67764 6888999987733 33
Q ss_pred EeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEcc-CCCeeEEEEcc
Q 000992 217 SSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNC-MSDLLAAVVRF 293 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSp-Dg~~LAs~~~d 293 (1196)
.+-.|+..|..|+|.-.|. .+||++.|+ .|++|+...+.|.......+. ......|+||+ |=.++|+-..|
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDG------SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d 264 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADG------SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD 264 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCC------cEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC
Confidence 3557999999999999764 789999875 599999887888866555443 35688999998 45688887766
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
. ..|+|-|+.... .-..+++.|...+..++|.|.....|..+. |+...++|+
T Consensus 265 S--~~V~iLDiR~P~-tpva~L~~H~a~VNgIaWaPhS~~hictaG-------------------------DD~qaliWD 316 (364)
T KOG0290|consen 265 S--NKVVILDIRVPC-TPVARLRNHQASVNGIAWAPHSSSHICTAG-------------------------DDCQALIWD 316 (364)
T ss_pred C--ceEEEEEecCCC-cceehhhcCcccccceEecCCCCceeeecC-------------------------CcceEEEEe
Confidence 5 258899987532 112345555545577999998876433322 444555555
Q ss_pred cccc---CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000992 374 LSLS---LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 374 l~~~---~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~l 419 (1196)
+... ++..|+..++ ..+.|+.+.|+|... ..+|++.. +++.+
T Consensus 317 l~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~-Dwiai~~~-kklei 361 (364)
T KOG0290|consen 317 LQQMPRENGEDPILAYT--AGGEVNQIQWSSSQP-DWIAICFG-KKLEI 361 (364)
T ss_pred cccccccCCCCchhhhh--ccceeeeeeecccCC-CEEEEEec-CeeeE
Confidence 5422 3344665555 566799999997653 77888744 34444
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-08 Score=122.43 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=132.6
Q ss_pred ceeEEeeecCCCE-EEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC-C
Q 000992 22 ILQFSALDIEQNR-LFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS-S 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~-l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~-d 96 (1196)
......|.+|++. +|..+. ...|+.+|+ .+++.. .+ ... .+.+....|||||+.|+.... +
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl--~tg~~~-~l-------t~~----~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNL--YTGKKE-KI-------ASS----QGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEEC--CCCcEE-EE-------ecC----CCcEEeeEECCCCCEEEEEEccC
Confidence 4567899999985 776543 357999998 555431 12 111 234667789999998886543 3
Q ss_pred --CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC-c--eEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 97 --GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF-G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 --G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d-~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
++|.+++..++....+..+.+......|||||+.|+..+.. + .|.+++...... .. ++ +.+
T Consensus 255 g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~r---------lt---~~g 320 (419)
T PRK04043 255 GQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--EQ---------VV---FHG 320 (419)
T ss_pred CCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--Ee---------Cc---cCC
Confidence 46888898888765444333334567899999999999853 2 344443221111 01 10 001
Q ss_pred CCCCeEEEEEccCCceEEEeecccccc--CCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSS--KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~--~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
. ...+|||||+++|.++.....+ .+...|.+.|.++|+....... +.....+|||||+.|+..+.... .
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~---~ 391 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFIKYLGN---Q 391 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEEEccCC---c
Confidence 1 2248999999999544321000 0114678889877776554442 33457899999999998876532 4
Q ss_pred CeEEEEeCCCeeEEEEEeccCCCCcEEEEEE
Q 000992 250 PSIVFYERNGLERSSFDINEQIDSTVELLKW 280 (1196)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW 280 (1196)
..+...+.+|..... ++.. .+.|.+-+|
T Consensus 392 ~~L~~~~l~g~~~~~--l~~~-~g~~~~p~W 419 (419)
T PRK04043 392 SALGIIRLNYNKSFL--FPLK-VGKIQSIDW 419 (419)
T ss_pred EEEEEEecCCCeeEE--eecC-CCccCCCCC
Confidence 457777888854433 3321 234555444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-07 Score=111.14 Aligned_cols=316 Identities=12% Similarity=0.036 Sum_probs=169.0
Q ss_pred EEEECCCcEEEEECCCCeE-EEeeeecCcE-EEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccC
Q 000992 91 IVGTSSGLLLLHSVDGNAT-EVVGRVEGGV-RFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~-e~vg~~~~~I-~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
++-..+|.|.++|..+.++ ..+... +.+ ..+.+||||+++.+++.||.|.+++ ...+.+.++.....
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--------- 79 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--------- 79 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---------
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---------
Confidence 3445689999999988654 333321 233 4477999999999999999998886 44556666554332
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------CCCceeEEEEcCCCCeEEEE
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------KAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------~~~~v~slawsPdG~~IAs~ 240 (1196)
-..+++|+||+|++ ++.. ..+++.|+|.++.+.+++... ....+..|.-+|.+...+..
T Consensus 80 --------~~~i~~s~DG~~~~-v~n~-----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 80 --------PRGIAVSPDGKYVY-VANY-----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp --------EEEEEE--TTTEEE-EEEE-----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred --------cceEEEcCCCCEEE-EEec-----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 27899999999999 6654 357999999889988876532 12345678889998865555
Q ss_pred ecCCCCCCCCeEEEEeCCCe---eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 241 YDRKSENKCPSIVFYERNGL---ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl---~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
-.+ ...|.+-+-... .... +. .........|+|||+++.++.... +.|-+++..+..- ...+..
T Consensus 146 lkd-----~~~I~vVdy~d~~~~~~~~--i~--~g~~~~D~~~dpdgry~~va~~~s--n~i~viD~~~~k~--v~~i~~ 212 (369)
T PF02239_consen 146 LKD-----TGEIWVVDYSDPKNLKVTT--IK--VGRFPHDGGFDPDGRYFLVAANGS--NKIAVIDTKTGKL--VALIDT 212 (369)
T ss_dssp ETT-----TTEEEEEETTTSSCEEEEE--EE----TTEEEEEE-TTSSEEEEEEGGG--TEEEEEETTTTEE--EEEEE-
T ss_pred Ecc-----CCeEEEEEeccccccceee--ec--ccccccccccCcccceeeeccccc--ceeEEEeeccceE--EEEeec
Confidence 554 246655552221 1111 11 123466899999999887765443 2788999887542 112221
Q ss_pred ecC---CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 318 LRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 318 ~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
... .+..-.=||.. ...|.+.......+..+....+.+++...|-+ .+++...+.-
T Consensus 213 g~~p~~~~~~~~php~~----------------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv-----v~~I~~~G~g 271 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGF----------------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV-----VKTIPTQGGG 271 (369)
T ss_dssp SSSBEETTEEEEEETTT----------------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE-----EEEEE-SSSS
T ss_pred cccccccccccccCCCc----------------ceEEeeccccceecccccCCccccchhhcCeE-----EEEEECCCCc
Confidence 100 01111122322 12344443333333444444444444443322 2344444444
Q ss_pred EEEEEecCCCCCEEEEE----ECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCC
Q 000992 395 TEMAFYSKSSKNCLAAI----LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR 470 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~----~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~ 470 (1196)
.-+.-+|++ ..+.+. ..+++|.++|..+.... .++.......+.|+.|++||+.+-++..+..
T Consensus 272 lFi~thP~s--~~vwvd~~~~~~~~~v~viD~~tl~~~-----------~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 272 LFIKTHPDS--RYVWVDTFLNPDADTVQVIDKKTLKVV-----------KTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp --EE--TT---SEEEEE-TT-SSHT-EEEEECCGTEEE-----------E-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred ceeecCCCC--ccEEeeccCCCCCceEEEEECcCccee-----------EEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 667778999 788877 34489999998863221 1111111124899999999987766655443
Q ss_pred CceEEEE
Q 000992 471 HSNYFRG 477 (1196)
Q Consensus 471 ~~~~~~~ 477 (1196)
..+.+++
T Consensus 339 ~~i~v~D 345 (369)
T PF02239_consen 339 GAIVVYD 345 (369)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 4555554
|
... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-08 Score=119.69 Aligned_cols=269 Identities=17% Similarity=0.131 Sum_probs=165.5
Q ss_pred CcEEEEECCCC-eEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc--Cce-eeeeecccccCccccccCcccc
Q 000992 97 GLLLLHSVDGN-ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD--WDL-LYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 G~I~lw~~~~~-~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~--~d~-~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
+.+.+|+.... ..+.+=.....|.|+.|+|. ..+||.|+.+|+|.+|+.. .++ ....+. +-+.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------------~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------------LEVS 289 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------------cccc
Confidence 57889998764 44544445788999999996 5677777889999998621 111 111111 1225
Q ss_pred CCCCeEEEEEccCCce--EEEeeccccccCCCCEEEEEECCC------CcEEEEec------cCCCceeEEEEcCCC-Ce
Q 000992 172 SFSFKSPISWRGDGKY--FATLSEFCNSSKLHKRLKVWERDS------GTLQASSE------LKAFMGAVLEWMPSG-AN 236 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~--lAsvss~d~~~~~d~~irVWd~~~------G~l~~~~e------~~~~~v~slawsPdG-~~ 236 (1196)
|.+.++.+.|-.+-.- |+ +++ .|+.|..|+.+- +.+..... .....+.+++|.|.- +.
T Consensus 290 h~~~v~~vvW~~~~~~~~f~-s~s------sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFF-SLS------SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred CCcCeEEEEEeccCCCCceE-EEe------cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 7788899999654433 66 343 268999998721 11111111 111235788888854 33
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCeeEEE---EEe---ccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNGLERSS---FDI---NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW 309 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nGl~~~~---f~l---~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~w 309 (1196)
+..|++. +.|---.|.|.+.+. |.. ...+.+.|..+.|||=+..+...+.|- +|+||... +..-
T Consensus 363 FiVGTe~------G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~~~~~P 433 (555)
T KOG1587|consen 363 FIVGTEE------GKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSEDVIASP 433 (555)
T ss_pred EEEEcCC------cEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEeccccCCCCc
Confidence 4445543 234444666666553 111 122457899999999998766666677 89999987 4321
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
.+ .+..+.+..+.++|||..+..+++...+|.+. +|+|.. ...-|++...+.
T Consensus 434 l~--~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~-------------------------iWDLl~-~~~~Pv~s~~~~ 485 (555)
T KOG1587|consen 434 LL--SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD-------------------------IWDLLQ-DDEEPVLSQKVC 485 (555)
T ss_pred ch--hhhhccceeeeeEEcCcCceEEEEEcCCCcee-------------------------hhhhhc-cccCCccccccc
Confidence 00 00011112377999999998777776666554 344332 122344332222
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
....+.+.|+++| +.||+|...|++++|++..
T Consensus 486 -~~~l~~~~~s~~g--~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 486 -SPALTRVRWSPNG--KLLAVGDANGTTHILKLSE 517 (555)
T ss_pred -ccccceeecCCCC--cEEEEecCCCcEEEEEcCc
Confidence 2334678899989 8999999999999999964
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-08 Score=114.07 Aligned_cols=201 Identities=19% Similarity=0.178 Sum_probs=130.5
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
-.++|++||..+| +++ .|+++|||+...-........|.+.|.++.|||||++||+.+.+ ...+|+
T Consensus 148 k~vaf~~~gs~la-tgg------~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-------~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLA-TGG------TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-------SARVWS 213 (398)
T ss_pred eEEEEcCCCCEee-ecc------ccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-------ceEEEE
Confidence 6899999999999 564 47999999932555555555678889999999999999999985 377898
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCC---CeeEEEEccCCcceEEEEEecCCEE----EEEEEEEEecCCcEEEEEcc
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMS---DLLAAVVRFEEYDSVKICFFSNNHW----YLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg---~~LAs~~~d~~~~~V~lW~~~n~~w----ylkq~l~~~~~~~~~v~Wsp 329 (1196)
.+-..+-...-+.........+.|+-|+ .++..+.. .++..|.+|++.-++| .+++-+.- .+...++.=|+
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~ 291 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSD 291 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcC
Confidence 6532110000111112346678899888 22222222 1233688888877666 22222211 12336777888
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lA 409 (1196)
+|.. +++++.+|.+.+++ -..+..--+ + .-.|...|+.|.|+||. +.++
T Consensus 292 dGkf-~AlGT~dGsVai~~-----------------~~~lq~~~~----v-------k~aH~~~VT~ltF~Pds--r~~~ 340 (398)
T KOG0771|consen 292 DGKF-LALGTMDGSVAIYD-----------------AKSLQRLQY----V-------KEAHLGFVTGLTFSPDS--RYLA 340 (398)
T ss_pred CCcE-EEEeccCCcEEEEE-----------------eceeeeeEe----e-------hhhheeeeeeEEEcCCc--Cccc
Confidence 8866 78888777665433 222211100 0 01277789999999999 8999
Q ss_pred EEECCCcEEEEeCCC
Q 000992 410 AILSDGCLCVVDLPA 424 (1196)
Q Consensus 410 s~~~dg~v~lw~~~~ 424 (1196)
+.+.|.+..+..+..
T Consensus 341 svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 341 SVSSDNEAAVTKLAV 355 (398)
T ss_pred ccccCCceeEEEEee
Confidence 999999999887753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-08 Score=114.12 Aligned_cols=277 Identities=12% Similarity=0.096 Sum_probs=177.5
Q ss_pred ceeEEeeecCCC--EEEEEeCCCcEEEEecccccccc-cceeeccccccccccCCC-CCCEEEEEEccCC-CEEEEEECC
Q 000992 22 ILQFSALDIEQN--RLFFASSANNIYSAQLSSFQNER-ASIKTAISAEIEHIDLEP-GDSITAFDYLMEK-EALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~--~l~~~s~~~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~-~~La~as~d 96 (1196)
.+.+++|=|--+ .|.+++.-++|=.||+ .+++- .-.+ .. |.| ++.|.+|.|+|.. .++.+.|-|
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~--~~~~~d~d~v------~~---f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNF--GTQEKDKDGV------YL---FTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEec--CCCCCccCce------EE---eccCCccccceEecCCChhheeeeccC
Confidence 788888887654 4555566788999999 32211 0011 11 122 4679999999965 577788999
Q ss_pred CcEEEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 97 GLLLLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|+|++-|.++...+.+=. ...++..+.||.+...+.+++.=|..-+|+..-+. ++.. . +.-|+
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~-s~~~--~-----------~~lh~ 322 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG-SEYE--N-----------LRLHK 322 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC-ccch--h-----------hhhhh
Confidence 999999999876653322 23567889999999988888877766665422111 1000 0 11234
Q ss_pred CCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCC--Cc---EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC
Q 000992 174 SFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDS--GT---LQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN 247 (1196)
Q Consensus 174 ~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~--G~---l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~ 247 (1196)
-.|.++++.|-..+ || .++ -|++.||||... ++ ++++. +|...|.+..|||+|-.|++.+.|
T Consensus 323 kKI~sv~~NP~~p~~la-T~s------~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gtl~TT~~D---- 390 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLA-TAS------LDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGTLLTTCQD---- 390 (498)
T ss_pred cccceeecCCCCchhee-ecc------cCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCceEeeccC----
Confidence 56799999998865 56 465 369999999742 22 23443 478889999999998888888875
Q ss_pred CCCeEEEEeCCC-----eeEEEEEec-cCCC---CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 248 KCPSIVFYERNG-----LERSSFDIN-EQID---STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 248 ~~~~V~~~e~nG-----l~~~~f~l~-~~~~---~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
..|++|+-.- ...+ +++ .... -....-+|.||-.+++++-.-+ .|-+++-++.+- -.++..+
T Consensus 391 --~~IRv~dss~~sa~~~p~~--~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r---~IDv~~~~~~q~--v~el~~P 461 (498)
T KOG4328|consen 391 --NEIRVFDSSCISAKDEPLG--TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR---PIDVFDGNGGQM--VCELHDP 461 (498)
T ss_pred --CceEEeecccccccCCccc--eeeccCcccccccchhheeCCCccEEEEeccCc---ceeEEcCCCCEE--eeeccCc
Confidence 4699998631 0011 111 0001 1355778999999999998877 699999887531 1222221
Q ss_pred cC-Cc-EEEEEccCCCceEEEEecCCcE
Q 000992 319 RR-DG-IRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 319 ~~-~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
.. .+ ....|||-+...+.-.+..|.+
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKI 489 (498)
T ss_pred cccccccceeecccccceeccCCccceE
Confidence 11 22 4578999876433333334433
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=117.54 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=106.6
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEE--ECCCcEEEEEC
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVG--TSSGLLLLHSV 104 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~a--s~dG~I~lw~~ 104 (1196)
..-..+.|.++-++. ||.+|++ .++-. +| +... .| ...+.+++.++++.+||-- ...|+|.|||.
T Consensus 93 VrmNr~RLvV~Lee~-IyIydI~-~MklL----hT----I~t~--~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 93 VRMNRKRLVVCLEES-IYIYDIK-DMKLL----HT----IETT--PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EEEccceEEEEEccc-EEEEecc-cceee----hh----hhcc--CCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 334457788887777 9999995 44432 22 1111 11 2458888888888899843 45799999999
Q ss_pred CCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 105 DGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 105 ~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
.+- .+.....|++.|.|++|||||.+||+||..|||+ +.+ .+++.+.|..-... . ..+.+++|
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----~----------~~IySL~F 226 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----P----------VSIYSLSF 226 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----e----------eEEEEEEE
Confidence 874 3445668999999999999999999999999985 332 33444444332211 1 36799999
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
+||++||+ +++ ...||.||..++
T Consensus 227 s~ds~~L~-~sS------~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 227 SPDSQFLA-ASS------NTETVHIFKLEK 249 (391)
T ss_pred CCCCCeEE-Eec------CCCeEEEEEecc
Confidence 99999999 555 357999998733
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-09 Score=114.15 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=167.7
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFD 163 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~ 163 (1196)
..+|++.++|.|+|||..++. ++....+++.++.++|+- .+..+.+++.||+|++|+ |.......+......
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence 568888999999999999854 454444678888899977 467899999999999986 444333333222111
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EE-EeccCCCceeEEEEcCCC-CeEEEE
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QA-SSELKAFMGAVLEWMPSG-ANIAAV 240 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~-~~e~~~~~v~slawsPdG-~~IAs~ 240 (1196)
.....+++-.-.++.++ +++... ..+..+.+||.+.-+. +. -.+.|..-|++|.|.|+. ++++||
T Consensus 117 ---------~~~f~~ld~nck~~ii~-~GtE~~--~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 117 ---------GTPFICLDLNCKKNIIA-CGTELT--RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred ---------CCcceEeeccCcCCeEE-eccccc--cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 01223444443677888 676322 2567899999754332 33 347788899999999964 799999
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 241 YDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
|.|+ -|-+|+.++.-..+--+. .-...+|..+.|..++ +.|-+-+... +..+|+++... .+..+.
T Consensus 185 SvDG------LvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E---tf~~~ele~~~----~~~~~~ 251 (376)
T KOG1188|consen 185 SVDG------LVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME---TFAIYELEDGS----EETWLE 251 (376)
T ss_pred cccc------eEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC---ceeEEEccCCC----hhhccc
Confidence 9874 588898765421110000 0123469999999999 2244444454 68888876532 111111
Q ss_pred cCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcC--CEEEEeeccc---cCCCCCceeeeecCCC
Q 000992 319 RRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDG--SKILVTPLSL---SLMPPPMYLFSLKFPT 392 (1196)
Q Consensus 319 ~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg--~~l~lt~l~~---~~vpppm~~~~l~~~~ 392 (1196)
.... ....|-.+.. -.+ +-...|.+.++.+++.+ ++..+-|+.. .....|....+-.|..
T Consensus 252 ~~~~~~~d~r~~~~~--dY~------------I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~e 317 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNC--DYV------------INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEE 317 (376)
T ss_pred CccchhhhHHhhhhh--hhe------------eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHH
Confidence 1000 0001110000 000 00011223333333322 2333333321 1111111111122455
Q ss_pred CEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 393 AVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 393 ~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
-|.++.|-..+ .++-+++.||.|.+|..+
T Consensus 318 iVR~i~~~~~~--~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 318 IVRDILFDVKN--DVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred HHHHHhhhccc--ceeeccCCCceEEEEecC
Confidence 57888888777 899999999999999964
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=123.55 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=159.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC------Ce---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG------NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~------~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
.+.|.+++|.|-...|++++.||+|++|+++. +. +-..-.|.++|.|++.++.|+.+-+||-||+|..|+.
T Consensus 294 ~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~ 373 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNL 373 (577)
T ss_pred hhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeecc
Confidence 36899999999999999999999999999931 22 2356678999999999999999999999999988853
Q ss_pred cCceeeeeeccccc-CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CC-
Q 000992 146 DWDLLYENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KA- 222 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~-~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~- 222 (1196)
- ....+.+ ..-.+-.+.+.||.+.++.+++|+.-..|++ .+ .|+|+|.|+. +++...++.. ..
T Consensus 374 p------~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-cs------~DgTvr~w~~-~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 374 P------PNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-CS------SDGTVRLWEP-TEESPCTFGEPKEH 439 (577)
T ss_pred C------CCCCcccccCcchhccceeccccceeeeeecccccceee-ec------CCceEEeecc-CCcCccccCCcccc
Confidence 1 0111111 1111114557799999999999999999984 43 3799999999 4443344422 11
Q ss_pred C---ceeEEEEcCCCCeEEEEecCCC------CCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEc
Q 000992 223 F---MGAVLEWMPSGANIAAVYDRKS------ENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 223 ~---~v~slawsPdG~~IAs~s~d~~------~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~ 292 (1196)
+ .+.-.+|.|. ++.++.... ..-..++++++-.. .+++. -..++-+.|.|.+.+..++..
T Consensus 440 g~Plsvd~~ss~~a---~~~~s~~~~~~~~~~~ev~s~~~~~~s~~-------~~~~~~~~~in~vVs~~~~~~~~~~he 509 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPA---HSLASFRFGYTSIDDMEVVSDLLIFESSA-------SPGPRRYPQINKVVSHPTADITFTAHE 509 (577)
T ss_pred CCcceEeeccchhH---hhhhhcccccccchhhhhhhheeeccccC-------CCcccccCccceEEecCCCCeeEeccc
Confidence 1 1223334443 222221100 00112344444221 11111 135888999999999999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
|+ .|+++|..+.. +..+...+....++++.+|.|+. |+.++.+|.+.
T Consensus 510 d~---~Ir~~dn~~~~--~l~s~~a~~~svtslai~~ng~~-l~s~s~d~sv~ 556 (577)
T KOG0642|consen 510 DR---SIRFFDNKTGK--ILHSMVAHKDSVTSLAIDPNGPY-LMSGSHDGSVR 556 (577)
T ss_pred CC---ceecccccccc--cchheeeccceecceeecCCCce-EEeecCCceee
Confidence 99 89999988764 23344444444478999999987 67777666553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-09 Score=121.10 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=88.7
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc---ccceeecccccc--------cc-ccCCC----CCCEEEEEEc
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE---RASIKTAISAEI--------EH-IDLEP----GDSITAFDYL 84 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~---~~~~~~~~~~~l--------~~-~~~~~----~~~v~~v~~s 84 (1196)
.++++.|-+.++.+|.++- ++.+|.+|.. .... -.+.....++.+ .. .|..+ .+.|..++||
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~-~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKE-IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeecc-ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 7899999999999998865 6678888653 1110 001111111111 00 12211 3689999999
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 85 MEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
|||+.||++|.||.++|+|-++.++. +.-+.=+|..|++|||||++||+|++|.-|.+|+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 99999999999999999999986654 3333457899999999999999999999999997
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-06 Score=101.31 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=57.1
Q ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 000992 1014 FCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDW 1093 (1196)
Q Consensus 1014 ~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w 1093 (1196)
...|+++-|.+||.++++|..++-+..-.+ +. +-+.+|++.-...|++.-|-.+++- +||+++.++++++.+++
T Consensus 358 L~~g~~~lAe~c~~k~~d~~~L~lLy~~~g-~~----~~L~kl~~~a~~~~~~n~af~~~~~-lgd~~~cv~lL~~~~~~ 431 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKDFSGLLLLYSSTG-DR----EKLSKLAKIAEERGDINIAFQAALL-LGDVEECVDLLIETGRL 431 (443)
T ss_dssp HHTTBHHHHHHHHHHCT-HHHHHHHHHHCT--H----HHHHHHHHHHHHTT-HHHHHHHHHH-HT-HHHHHHHHHHTT-H
T ss_pred HHcCCHHHHHHHHHhhcCccccHHHHHHhC-CH----HHHHHHHHHHHHccCHHHHHHHHHH-cCCHHHHHHHHHHcCCc
Confidence 334555555555555555555554444433 32 2344666667788999999999888 99999999999999999
Q ss_pred HHHHHHHHhcC
Q 000992 1094 EEALRVAFMHR 1104 (1196)
Q Consensus 1094 ~eA~rla~~~~ 1104 (1196)
.+|.-.|..|.
T Consensus 432 ~~A~~~A~ty~ 442 (443)
T PF04053_consen 432 PEAALFARTYG 442 (443)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHhcC
Confidence 99999888774
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-06 Score=97.23 Aligned_cols=253 Identities=14% Similarity=0.150 Sum_probs=159.5
Q ss_pred CCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 000992 31 EQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1196)
Q Consensus 31 ~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~ 107 (1196)
.++.||+.|+ -++||.+|+ ..++. +-|.--. .-..=+-+.||+.++. +..|+|.++|+++.
T Consensus 234 V~~RvYFlsD~eG~GnlYSvdl--dGkDl-----------rrHTnFt--dYY~R~~nsDGkrIvF-q~~GdIylydP~td 297 (668)
T COG4946 234 VGERVYFLSDHEGVGNLYSVDL--DGKDL-----------RRHTNFT--DYYPRNANSDGKRIVF-QNAGDIYLYDPETD 297 (668)
T ss_pred EcceEEEEecccCccceEEecc--CCchh-----------hhcCCch--hccccccCCCCcEEEE-ecCCcEEEeCCCcC
Confidence 4789999988 347999998 44442 2221000 0111123679999876 57899999999986
Q ss_pred eEEEe--e-eec---------CcEEEEE-ECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 108 ATEVV--G-RVE---------GGVRFIS-PSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 108 ~~e~v--g-~~~---------~~I~~~a-wSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.++.+ | -.+ ....-+. ||+ +|+++|++|.. ++-+| +.|+.-. +++ ++.
T Consensus 298 ~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-kaFi~-~~~~~~~-iqv---------------~~~ 359 (668)
T COG4946 298 SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-KAFIM-RPWDGYS-IQV---------------GKK 359 (668)
T ss_pred cceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-cEEEE-CCCCCee-EEc---------------CCC
Confidence 55422 2 001 1111111 444 68999999975 55566 4465422 222 344
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.+|.-..+..|++-++ ++..|+ -.+-|+|. .|-.....++.-|.+.++.-+|||+.++.+-. +..+.
T Consensus 360 ~~VrY~r~~~~~e~~v-igt~dg-----D~l~iyd~-~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd------r~el~ 426 (668)
T COG4946 360 GGVRYRRIQVDPEGDV-IGTNDG-----DKLGIYDK-DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND------RFELW 426 (668)
T ss_pred CceEEEEEccCCcceE-EeccCC-----ceEEEEec-CCceEEEeeCCccceEEEEEcCCCcEEEEEcC------ceEEE
Confidence 5678888889999888 776431 27899999 44455556667788999999999999988765 34555
Q ss_pred EEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccC
Q 000992 254 FYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPT 330 (1196)
Q Consensus 254 ~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~ 330 (1196)
+.|. ||..+- +.....+-|....|||+|+.+|-+--++- ...|+|+|+.+.+.|-.- . +..- .+-+|+||
T Consensus 427 vididngnv~~---idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT---T-~ta~DfsPaFD~d 499 (668)
T COG4946 427 VIDIDNGNVRL---IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT---T-PTAYDFSPAFDPD 499 (668)
T ss_pred EEEecCCCeeE---ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec---C-CcccccCcccCCC
Confidence 5553 443321 11122456999999999999999876552 236999999986543211 1 1111 44578888
Q ss_pred CCceEEEE
Q 000992 331 KPLQLICW 338 (1196)
Q Consensus 331 ~~~~L~~~ 338 (1196)
+.. |..+
T Consensus 500 ~ry-LYfL 506 (668)
T COG4946 500 GRY-LYFL 506 (668)
T ss_pred CcE-EEEE
Confidence 875 4433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8e-09 Score=119.81 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=149.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEec---cc-ccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQL---SS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG 97 (1196)
-+.++++-+-.-.|+.|++++.|..|++ .. .++.. -.|-+ +++| .+.|.++.+++.++.+.+|+.||
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~-epi~t----fraH----~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDV-EPILT----FRAH----EGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccce-eeeEE----Eecc----cCceEEEEecCCceEEEeeccCc
Confidence 4556677777888999999999999998 21 11111 11222 4444 47899999999999999999999
Q ss_pred cEEEEECCC-------C---eE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee--ccccc-Ccc
Q 000992 98 LLLLHSVDG-------N---AT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP--LEELA-EGF 162 (1196)
Q Consensus 98 ~I~lw~~~~-------~---~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~--l~~~~-~~~ 162 (1196)
+|+.|+... . .+ . ..| |.+.||.+++|+--..|++++.||||++|... .+.+ +.... ++.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~----~~~~~~f~~~~e~g~ 441 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPT----EESPCTFGEPKEHGY 441 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccC----CcCccccCCccccCC
Confidence 999996521 1 11 2 345 68899999999999999999999999887522 1111 10000 111
Q ss_pred ccc---------------------------cCccc----------cCCCCeEEEEEccCCceEEEeeccccccCCCCEEE
Q 000992 163 DVH---------------------------EPELS----------SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK 205 (1196)
Q Consensus 163 ~Vs---------------------------~tqf~----------~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir 205 (1196)
+.+ ..+++ ...+.+..|.|.|.+-+.. .+. +++.||
T Consensus 442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~-~~h------ed~~Ir 514 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITF-TAH------EDRSIR 514 (577)
T ss_pred cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeE-ecc------cCCcee
Confidence 111 01111 1335678899999997666 342 589999
Q ss_pred EEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 206 VWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 206 VWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
++|-.+|.++.....|...+.++++-|+|-++++++.|. .|.+|..
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~------sv~l~kl 560 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDG------SVRLWKL 560 (577)
T ss_pred cccccccccchheeeccceecceeecCCCceEEeecCCc------eeehhhc
Confidence 999989999888877888889999999999999999864 5888864
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.3e-07 Score=106.76 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=154.1
Q ss_pred CEEEEEEccCCCEEEE-----EECCC-----cEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 77 SITAFDYLMEKEALIV-----GTSSG-----LLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~-----as~dG-----~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
.+.++.|||-|..|++ ...++ .+++|+..++.. .+.-..+.+ |+.+||+|..+.|-..+. .|.++.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~n-ev~f~~ 152 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSN-EVQFYD 152 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcc-eEEEEe
Confidence 7899999999998875 23333 466899988432 244444555 899999997776655443 466654
Q ss_pred c-cCceee---------eeecccccCccccc--------------------cCcccc------CCCCeEEEEEccCCceE
Q 000992 145 H-DWDLLY---------ENPLEELAEGFDVH--------------------EPELSS------SFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 145 ~-~~d~~~---------~~~l~~~~~~~~Vs--------------------~tqf~~------~~~~v~~isWspDG~~l 188 (1196)
. +++.+. ...+.+..+.-+|- +.+.+. .....+...|.+-|.-|
T Consensus 153 ~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 153 LGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred cCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 2 222211 11122211000010 111110 11234678999877732
Q ss_pred -E-Eeeccccc-c--CCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 189 -A-TLSEFCNS-S--KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 189 -A-svss~d~~-~--~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
+ +++.+|.. . =+..++.+.+. +|+-...--...|.|+++.|+|+|+-+|.+-..- .-.|.||+.+|....
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t-~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM----PAkvtifnlr~~~v~ 307 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLAT-QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM----PAKVTIFNLRGKPVF 307 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEe-cCceEEEecCCCCCceEEEECCCCCEEEEEEecc----cceEEEEcCCCCEeE
Confidence 2 13334421 0 13467888898 6777666656789999999999999887764321 357999999987654
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
+ ++ ++.=+.+-|||-|.+|+.++-+.-.+.|.+||+.|++ +...+...+.+.+.|+|+|.. +.+.+.
T Consensus 308 d--f~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~~tt~~eW~PdGe~-flTATT 374 (566)
T KOG2315|consen 308 D--FP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAANTTVFEWSPDGEY-FLTATT 374 (566)
T ss_pred e--CC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh----hccccccCCceEEEEcCCCcE-EEEEec
Confidence 3 33 3445689999999999999876533469999999964 333333334478899999976 445443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-07 Score=104.09 Aligned_cols=321 Identities=16% Similarity=0.181 Sum_probs=190.0
Q ss_pred CEEEEEECCCc--EEEEECCCCeEE-EeeeecCc-EEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCcc
Q 000992 88 EALIVGTSSGL--LLLHSVDGNATE-VVGRVEGG-VRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 88 ~~La~as~dG~--I~lw~~~~~~~e-~vg~~~~~-I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
.+.|+....++ ...||....... +... ... =+-+.|||-|.+|++--.-| |.+|. .+|+.+.... |
T Consensus 179 DQf~v~~d~~~~~svfwN~~~n~p~~ie~R-enWTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H------ 249 (698)
T KOG2314|consen 179 DQFVVQDDVKTTVSVFWNSKFNEPSLIEER-ENWTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H------ 249 (698)
T ss_pred ceEEEEecCcceeEEEccccCCchhhhhhh-hcceeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C------
Confidence 45666665555 455887553221 2111 222 35688999999999987765 77885 5565543322 2
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccc-----cCCCCEEEEEECCCCcEEEEeccC--CCce-eEEEEcCCC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELK--AFMG-AVLEWMPSG 234 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-----~~~d~~irVWd~~~G~l~~~~e~~--~~~v-~slawsPdG 234 (1196)
.+|.-|.|||.-+||+|-|. .+. +.+...++|||..+|.+..++.-. .... .-..||-|+
T Consensus 250 -----------p~Vq~idfSP~EkYLVT~s~-~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 250 -----------PGVQFIDFSPNEKYLVTYSP-EPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred -----------CCceeeecCCccceEEEecC-CccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC
Confidence 24578999999999995432 222 123468999999999998887542 2223 456899999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc---CCCCcEEEEEEccCCCeeEEEEccCCcc--eEEEEEecCCEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEEYD--SVKICFFSNNHW 309 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~---~~~~~V~~laWSpDg~~LAs~~~d~~~~--~V~lW~~~n~~w 309 (1196)
+++|....+ .|.+||.-. |.|-. -.-..|...+|||-+++||-++...... .+.|-.+..
T Consensus 318 Ky~Arm~~~-------sisIyEtps-----f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs--- 382 (698)
T KOG2314|consen 318 KYFARMTGN-------SISIYETPS-----FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS--- 382 (698)
T ss_pred ceeEEeccc-------eEEEEecCc-----eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc---
Confidence 999987653 588888532 22210 0124588999999999999998765211 455554443
Q ss_pred EEEEEEEEec---CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 310 YLKYEIRYLR---RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 310 ylkq~l~~~~---~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
+++|+... -.-..+.|-..|.. |.+-. ...+...-.|+. .++-+.-++..+||- .
T Consensus 383 --~~~iRt~nlfnVsDckLhWQk~gdy-Lcvkv----------dR~tK~~~~g~f-----~n~eIfrireKdIpv----e 440 (698)
T KOG2314|consen 383 --KREIRTKNLFNVSDCKLHWQKSGDY-LCVKV----------DRHTKSKVKGQF-----SNLEIFRIREKDIPV----E 440 (698)
T ss_pred --cceeeeccceeeeccEEEeccCCcE-EEEEE----------EeeccccccceE-----eeEEEEEeeccCCCc----e
Confidence 23333110 00023455555443 22211 110000000111 134444555666542 3
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEE
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLS 463 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~d---g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla 463 (1196)
.+++.+.|..-+|-|.| +.+|+.+.+ .++.+|...+. ++.+.....+ ......++.|+|.|++++
T Consensus 441 ~velke~vi~FaWEP~g--dkF~vi~g~~~k~tvsfY~~e~~-------~~~~~lVk~~---dk~~~N~vfwsPkG~fvv 508 (698)
T KOG2314|consen 441 VVELKESVIAFAWEPHG--DKFAVISGNTVKNTVSFYAVETN-------IKKPSLVKEL---DKKFANTVFWSPKGRFVV 508 (698)
T ss_pred eeecchheeeeeeccCC--CeEEEEEccccccceeEEEeecC-------CCchhhhhhh---cccccceEEEcCCCcEEE
Confidence 45678899999999999 888888765 68888887631 1111111111 112577889999999988
Q ss_pred EEecC-CCCceEEEEe
Q 000992 464 VSHHG-PRHSNYFRGA 478 (1196)
Q Consensus 464 ~~~~~-~~~~~~~~~~ 478 (1196)
++.-. ....+.++..
T Consensus 509 va~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 509 VAALVSRRGDLEFYDT 524 (698)
T ss_pred EEEecccccceEEEec
Confidence 76553 2355566655
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=107.43 Aligned_cols=253 Identities=13% Similarity=0.147 Sum_probs=161.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce---
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--- 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~--- 149 (1196)
.+.|+++-|-.+++ |-+++..|-|++|+++|.+- .+-+.+...|+.+.-=|+ ..|.+-+.|..+.+|+..+..
T Consensus 14 ~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 14 SSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred cchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEE
Confidence 45788888887766 77899999999999998643 233345678999999998 566777889999999866521
Q ss_pred eeeeeccccc--------Ccc----------------ccc----cCccc-------cCCCCeEEEEEcc-CCceEEEeec
Q 000992 150 LYENPLEELA--------EGF----------------DVH----EPELS-------SSFSFKSPISWRG-DGKYFATLSE 193 (1196)
Q Consensus 150 ~~~~~l~~~~--------~~~----------------~Vs----~tqf~-------~~~~~v~~isWsp-DG~~lAsvss 193 (1196)
+..+.+.... ..+ ++. .+|.+ +..+.+.+..|-- +|.++.-.++
T Consensus 92 i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaG 171 (323)
T KOG0322|consen 92 IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAG 171 (323)
T ss_pred EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEe
Confidence 1111111111 001 110 11211 3345677777654 4444331454
Q ss_pred cccccCCCCEEEEEECCCCcE----------EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe---
Q 000992 194 FCNSSKLHKRLKVWERDSGTL----------QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--- 260 (1196)
Q Consensus 194 ~d~~~~~d~~irVWd~~~G~l----------~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--- 260 (1196)
. +++.|-+||..+|.. .+-...|.+.+.++.+-|.-+.=++++.+ ..+..|..|-.
T Consensus 172 y-----Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~------dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 172 Y-----ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD------DKLVMYSLNHSTGS 240 (323)
T ss_pred c-----cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc------ccceeeeeccccCc
Confidence 3 468999999977722 22222366778888888765544444432 34566765421
Q ss_pred -eE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 261 -ER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 261 -~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
.+ ++.++..+ .|..+..-||+++||+++.|+ .|++++..+. .| |++.
T Consensus 241 lq~~~e~~lknp---Gv~gvrIRpD~KIlATAGWD~---RiRVyswrtl-----------------------~p--LAVL 289 (323)
T KOG0322|consen 241 LQIRKEITLKNP---GVSGVRIRPDGKILATAGWDH---RIRVYSWRTL-----------------------NP--LAVL 289 (323)
T ss_pred ccccceEEecCC---CccceEEccCCcEEeecccCC---cEEEEEeccC-----------------------Cc--hhhh
Confidence 22 22233333 478899999999999999998 7777543321 11 1221
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~ 418 (1196)
. .|.+.|++||||||. +.+|+++.|++|.
T Consensus 290 k-------------------------------------------------yHsagvn~vAfspd~--~lmAaaskD~rIS 318 (323)
T KOG0322|consen 290 K-------------------------------------------------YHSAGVNAVAFSPDC--ELMAAASKDARIS 318 (323)
T ss_pred h-------------------------------------------------hhhcceeEEEeCCCC--chhhhccCCceEE
Confidence 1 156778999999997 7999999999999
Q ss_pred EEeC
Q 000992 419 VVDL 422 (1196)
Q Consensus 419 lw~~ 422 (1196)
||++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9985
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8e-08 Score=106.44 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=173.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
+.| |.+.|+++.||.+|++||+|+.|..+++|+.+--....+ .++|. ..-++|...|.+++|.....++-
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------~KPI~-~~~~~H~SNIF~L~F~~~N~~~~- 121 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------PKPIG-VMEHPHRSNIFSLEFDLENRFLY- 121 (609)
T ss_pred hhh-hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-------CCCce-eccCccccceEEEEEccCCeeEe-
Confidence 445 578899999999999999999999999997431111111 12220 01124557899999998777666
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEecc--CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEe
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDI 267 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l 267 (1196)
++. .+++|-.-|.++.+.+..... ..|.|..++-+|--+.+|+.++++ .|.||+. ....+++..+
T Consensus 122 SG~------~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~------~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 122 SGE------RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAK------LVSFIDNRDRQNPISLVL 189 (609)
T ss_pred cCC------CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCc------eEEEEeccCCCCCCceee
Confidence 453 468888889988888877643 346889999999999999999864 6889983 2222555444
Q ss_pred ccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEE--E-EEEecCC--cEEEEEccCCCceEEEEecC
Q 000992 268 NEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKY--E-IRYLRRD--GIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq--~-l~~~~~~--~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
+..-...-.++-|+|--- +||+.+..+ -+-+|+..-..--+-| - +...+.. -..+.|+|.|.+. +....
T Consensus 190 ~AN~~~~F~t~~F~P~~P~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~-msiRR- 264 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETPALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQF-MSIRR- 264 (609)
T ss_pred ecCCCccceeeeecCCCceeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCee-hhhhc-
Confidence 422223467889999765 667777666 5889997632210000 0 0011111 1568899988652 22211
Q ss_pred Cc-EEEEEEE--------Eeee---------------cCCCeeEEEEcCCEEEEeeccccC--------------CCCCc
Q 000992 342 GQ-ITTYNFI--------WTTA---------------VMENSTALVIDGSKILVTPLSLSL--------------MPPPM 383 (1196)
Q Consensus 342 g~-~~~~~~~--------~~~~---------------~~d~~~v~viDg~~l~lt~l~~~~--------------vpppm 383 (1196)
|. -..+++. ++.. ..|..++...|.=.|.+|-+-..+ +|..+
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 11 0011111 1111 112222233444456777543221 11111
Q ss_pred e----eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 Y----LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~----~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
. +-.+ +|.+-++.|.|+|.. ++|++.+..+.++||.--
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~--~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHN--NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecccccccceeecCCc--ceEeccchhhheeccccc
Confidence 1 1122 367778999999999 899999999999999753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-07 Score=100.70 Aligned_cols=266 Identities=15% Similarity=0.226 Sum_probs=175.0
Q ss_pred eEEEEEc--cCCc-eEEEeeccccccCCCCEEEEEE--CCCCcEEEEe-ccCCCceeEEEEcCCC-----CeEEEEecCC
Q 000992 176 KSPISWR--GDGK-YFATLSEFCNSSKLHKRLKVWE--RDSGTLQASS-ELKAFMGAVLEWMPSG-----ANIAAVYDRK 244 (1196)
Q Consensus 176 v~~isWs--pDG~-~lAsvss~d~~~~~d~~irVWd--~~~G~l~~~~-e~~~~~v~slawsPdG-----~~IAs~s~d~ 244 (1196)
...+.|| ||.+ ++| +++...+ ..++|.|-. -++|++.... -.|...++.+.|.||. .+||++++
T Consensus 47 lya~~Ws~~~~~~~rla-~gS~~Ee--~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D-- 121 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLA-VGSFIEE--YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD-- 121 (364)
T ss_pred eeeeccccCCCcceeEE-Eeeeccc--cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--
Confidence 4677887 5544 577 8887543 456666653 3467666543 2478889999999997 37898876
Q ss_pred CCCCCCeEEEEeCCC---eeEEEEEec----cCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCC-EEEEEEEE
Q 000992 245 SENKCPSIVFYERNG---LERSSFDIN----EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEI 315 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nG---l~~~~f~l~----~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l 315 (1196)
.+++|..+- ..+-+..|. .+....+.+..|+. |=.++.+.+-|. |-.+|++... --+.|-.+
T Consensus 122 ------~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT---TCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 ------FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT---TCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred ------eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC---eEEEEEEeeccccceeeEE
Confidence 489997542 111111222 12235688999996 667788888888 9999999874 33566667
Q ss_pred EEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEe---ee----cC-------------C-Cee-EEEEcCCEEEEee
Q 000992 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWT---TA----VM-------------E-NST-ALVIDGSKILVTP 373 (1196)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~---~~----~~-------------d-~~~-v~viDg~~l~lt~ 373 (1196)
..|..++..++|...+...++....||.+.+++...- +- |. | .-+ ...-|.+.|.+-+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 6766667889999977777777778999987665311 10 11 1 111 2335778888877
Q ss_pred ccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEE
Q 000992 374 LSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIH 452 (1196)
Q Consensus 374 l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 452 (1196)
+|. |.+....+ .|.+.|+.|+|.|... +.|++++.|..+-+|++..... ..+. .+.+.-.....|.+
T Consensus 273 iR~----P~tpva~L~~H~a~VNgIaWaPhS~-~hictaGDD~qaliWDl~q~~~---~~~~----dPilay~a~~EVNq 340 (364)
T KOG0290|consen 273 IRV----PCTPVARLRNHQASVNGIAWAPHSS-SHICTAGDDCQALIWDLQQMPR---ENGE----DPILAYTAGGEVNQ 340 (364)
T ss_pred ecC----CCcceehhhcCcccccceEecCCCC-ceeeecCCcceEEEEecccccc---cCCC----Cchhhhhccceeee
Confidence 763 22233345 4999999999999974 8899999999999999975211 0110 01111112247999
Q ss_pred EEEec-CCeEEEEEec
Q 000992 453 LIWLG-SHLLLSVSHH 467 (1196)
Q Consensus 453 l~~~~-d~~lla~~~~ 467 (1196)
+.|++ .+..+|+++.
T Consensus 341 i~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICFG 356 (364)
T ss_pred eeecccCCCEEEEEec
Confidence 99985 4566777765
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-09 Score=110.54 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=119.2
Q ss_pred CCEEEEEEcc-CCC--EEEEEECCCcEEEEECCCC----------eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEE
Q 000992 76 DSITAFDYLM-EKE--ALIVGTSSGLLLLHSVDGN----------ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~--~La~as~dG~I~lw~~~~~----------~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
+.|.+..|-. ++. .|+.|.++|.|.+||..++ +.+ -...|...|.++.+.|.-..=++++.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 5566666433 232 4567889999999999885 222 3455788999999998877778888888899
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
+|+.+|+...- ++..... -...++..+..||||+.|| .++ .|+.||||+-.+++.+..+.-|
T Consensus 231 ~~Sl~~s~gsl-q~~~e~~----------lknpGv~gvrIRpD~KIlA-TAG------WD~RiRVyswrtl~pLAVLkyH 292 (323)
T KOG0322|consen 231 MYSLNHSTGSL-QIRKEIT----------LKNPGVSGVRIRPDGKILA-TAG------WDHRIRVYSWRTLNPLAVLKYH 292 (323)
T ss_pred eeeeccccCcc-cccceEE----------ecCCCccceEEccCCcEEe-ecc------cCCcEEEEEeccCCchhhhhhh
Confidence 99877764221 1110000 0123678899999999999 565 4689999998899999999999
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
.+.++++||+||-+++|+++.|. .|.+|.
T Consensus 293 sagvn~vAfspd~~lmAaaskD~------rISLWk 321 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAASKDA------RISLWK 321 (323)
T ss_pred hcceeEEEeCCCCchhhhccCCc------eEEeee
Confidence 99999999999999999999874 699996
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-07 Score=113.35 Aligned_cols=252 Identities=12% Similarity=0.064 Sum_probs=160.1
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE--EEEEECCCc
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA--LIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~--La~as~dG~ 98 (1196)
.+.++.|-+. .+.+..++.+++|..||+ ...... ++..+..+.-...+.++.+.|..+-.- ++++|.||.
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~--~~~~~~-----~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~ 316 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDL--RKGSDT-----PPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGS 316 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEc--cCCCCC-----CCcccccccccCCcCeEEEEEeccCCCCceEEEecCCc
Confidence 6777777755 466666688999999999 443331 122222111112468999999776555 899999999
Q ss_pred EEEEECCCCe-------EEEee------eecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeee-eecccccCccc
Q 000992 99 LLLHSVDGNA-------TEVVG------RVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFD 163 (1196)
Q Consensus 99 I~lw~~~~~~-------~e~vg------~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~-~~l~~~~~~~~ 163 (1196)
|..|+.+.-. .+..- .-..++++++|.|- -..+.+||.+|.|.--++..-.... .....
T Consensus 317 i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~------ 390 (555)
T KOG1587|consen 317 ICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG------ 390 (555)
T ss_pred EeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc------
Confidence 9999876311 11111 11357899999775 3467788899988654432211111 00010
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCC-eEEEEe
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGA-NIAAVY 241 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s 241 (1196)
..++..|.+.+..|.|+|=+.-+. .++ +|-++|||.-. .-..+..++.....+.+++|||--- .+|++.
T Consensus 391 --~~~~~~h~g~v~~v~~nPF~~k~f-ls~------gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 391 --HSTFITHIGPVYAVSRNPFYPKNF-LSV------GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred --cccccccCcceEeeecCCCcccee-eee------ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 013346788999999999887554 232 36899999874 3333334444555689999999874 556665
Q ss_pred cCCCCCCCCeEEEEeCCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 242 DRKSENKCPSIVFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.+ +.+-+||.+-...+- ++.. ........+.|+++|++||+|...| ++.+|++.
T Consensus 462 ~~------G~l~iWDLl~~~~~P-v~s~~~~~~~l~~~~~s~~g~~lavGd~~G---~~~~~~l~ 516 (555)
T KOG1587|consen 462 GD------GNLDIWDLLQDDEEP-VLSQKVCSPALTRVRWSPNGKLLAVGDANG---TTHILKLS 516 (555)
T ss_pred CC------CceehhhhhccccCC-cccccccccccceeecCCCCcEEEEecCCC---cEEEEEcC
Confidence 54 468899964222111 1110 1123456789999999999999999 89999985
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-05 Score=92.42 Aligned_cols=143 Identities=14% Similarity=0.094 Sum_probs=92.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN 196 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~ 196 (1196)
+.|.|.+++ ++.+|.||-+|.|.+.+..+++ .....+. . + .-+|+|+| +.|
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s----------------~---~---~~~Gey~a-sCS--- 90 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHS----------------S---S---ILEGEYVA-SCS--- 90 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccc----------------c---c---ccCCceEE-Eec---
Confidence 457777777 6899999999999988777765 2211110 0 1 55899999 455
Q ss_pred ccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC-----CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccC
Q 000992 197 SSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GANIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQ 270 (1196)
Q Consensus 197 ~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd-----G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~ 270 (1196)
.|++|.|-...+++...+.. ...++.+|+++|+ .+...+|+. ++ ++++|||-+....- .+. .
T Consensus 91 ---~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~------ag-lvL~er~wlgnk~~v~l~-~ 158 (846)
T KOG2066|consen 91 ---DDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGM------AG-LVLSERNWLGNKDSVVLS-E 158 (846)
T ss_pred ---CCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCc------ce-EEEehhhhhcCccceeee-c
Confidence 46888887776665544333 3456789999999 445666665 23 99999874432211 122 2
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.++.|.++.|. |.++|=+..+| |+++++..
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G----v~vyd~~~ 188 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG----VKVYDTPT 188 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC----cEEEeccc
Confidence 34567777774 55666666666 77776654
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-07 Score=103.62 Aligned_cols=280 Identities=12% Similarity=0.085 Sum_probs=172.0
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC------cEEEEe-ccCCCceeEEEEcCCCCeEEEEecC
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG------TLQASS-ELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G------~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
+|.+-|..|.||.+|++|| +++ .|+.++||+.++. +.+... ++|...+.+++|.--...+-||.++
T Consensus 54 ~H~GCiNAlqFS~N~~~L~-SGG------DD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLA-SGG------DDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhccccceeeeccCCeEEe-ecC------CcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 6788899999999999999 565 5799999998432 222222 4566789999999998999999886
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc
Q 000992 244 KSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~ 322 (1196)
. +|+..+...... ..... ....+.|+.+.-+|-..+||+.+.++ .|-+|+.....- .-++....+.+
T Consensus 127 ~------~VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~---~V~~~D~Rd~~~--~~~~~~~AN~~ 194 (609)
T KOG4227|consen 127 G------TVIKHDIETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAK---LVSFIDNRDRQN--PISLVLPANSG 194 (609)
T ss_pred c------eeEeeeccccee-eeeecccCcccceeecccCCCCceEEEEecCc---eEEEEeccCCCC--CCceeeecCCC
Confidence 4 577776432221 11111 12235799999999999999999999 999999763210 01333334433
Q ss_pred ---EEEEEccCCCceEEEEecCCcEEEEEEEEeee-----------cC-C---CeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 323 ---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTA-----------VM-E---NSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 323 ---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~-----------~~-d---~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
.++.|+|+.|..|.+.+..|.+..++..-... +. . .+......|+.++ .++... ||..
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~m--siRR~~--~P~~ 270 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFM--SIRRGK--CPLY 270 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeeh--hhhccC--CCEE
Confidence 67899999998777777655554333221000 11 0 1222223444432 233221 2322
Q ss_pred ee-------eec--CC-------CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccc--cccCCce-------eee
Q 000992 385 LF-------SLK--FP-------TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE--DLEGTEF-------VVE 439 (1196)
Q Consensus 385 ~~-------~l~--~~-------~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~--~~~g~~~-------~~~ 439 (1196)
+. .++ |. ..+.+..|.-|- .+|+++.+-.|++|.+....... +.-|+.- .+.
T Consensus 271 ~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 271 FDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred eeeecccceeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 11 112 21 135678888775 69999999999999986421110 0012210 111
Q ss_pred e--ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 440 A--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 440 ~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
. ..+.+|...+.++.|+|-..+|++.+- .+.+++|+-
T Consensus 348 ~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV--E~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLRGHRSVPNQVRFSQHNNLLVSSGV--ENSFKLWSD 386 (609)
T ss_pred ceeEEEecccccccceeecCCcceEeccch--hhheecccc
Confidence 1 112467778999999999888775443 367788863
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.6e-07 Score=111.31 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=169.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EE--ee-eecCcEEEEEEC--CCCCEEEEEeCCceEEEEeccCcee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EV--VG-RVEGGVRFISPS--PDGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~--vg-~~~~~I~~~awS--PDg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
....+.|+|=..+++++...-.|.+||-+.++. .- .| ....+|..+.+= -|-.+|.+++.||.|++|..-.+.-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 356788899889999888778899999875543 21 11 123568887773 3567899999999999994221110
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~sla 229 (1196)
....+.+.- ..+ +.+..+..+.-.-+.|--...+|. +++ +-|.|||||...-.+.... -+.+..+++++
T Consensus 1146 ~~~eLVTaw--~~L-s~~~~~~r~~~~v~dWqQ~~G~Ll-~tG------d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1146 KKPELVTAW--SSL-SDQLPGARGTGLVVDWQQQSGHLL-VTG------DVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred CCceeEEee--ccc-cccCccCCCCCeeeehhhhCCeEE-ecC------CeeEEEEEecccceeEeecccCCCccceeec
Confidence 111111100 000 111111112125688988877887 554 3489999999433333322 22334556554
Q ss_pred E-cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE--EEEEeccCCCCc--EEEEEEccCCCe-eEEEEccCCcceEEEEE
Q 000992 230 W-MPSGANIAAVYDRKSENKCPSIVFYERNGLER--SSFDINEQIDST--VELLKWNCMSDL-LAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 230 w-sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~--~~f~l~~~~~~~--V~~laWSpDg~~-LAs~~~d~~~~~V~lW~ 303 (1196)
= .+.|++||.|-.|+ .|++||+---.. ..-..+ ++... |..+.+.+.|-- |.+++.+| .|++||
T Consensus 1216 ~~~~~gn~i~AGfaDG------svRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~D 1285 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADG------SVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLD 1285 (1387)
T ss_pred ccccCCceEEEeecCC------ceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccCC---eEEEEe
Confidence 3 34579999998864 599999631111 001112 23333 999999998876 99999999 899999
Q ss_pred ecCC-E-EEEEEEEEEec--CC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 304 FSNN-H-WYLKYEIRYLR--RD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 304 ~~n~-~-wylkq~l~~~~--~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+... . -++. +..+- .+ .+.+.-|+..+. ++.++ ++.+++|.+.+..
T Consensus 1286 lR~~~~e~~~~--iv~~~~yGs~lTal~VH~hapi-iAsGs--------------------------~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1286 LRMSSKETFLT--IVAHWEYGSALTALTVHEHAPI-IASGS--------------------------AQLIKIYSLSGEQ 1336 (1387)
T ss_pred cccCcccccce--eeeccccCccceeeeeccCCCe-eeecC--------------------------cceEEEEecChhh
Confidence 7641 0 0111 11110 11 134444444442 22222 2333333333221
Q ss_pred C----CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 379 M----PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 379 v----pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+ +.|... -+-.+.+.+++|+|-. -+||+|..|.+|.||..+.
T Consensus 1337 l~~~k~n~~F~--~q~~gs~scL~FHP~~--~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1337 LNIIKYNPGFM--GQRIGSVSCLAFHPHR--LLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred hcccccCcccc--cCcCCCcceeeecchh--HhhhhccCCceEEEeecCC
Confidence 1 112110 0123456899999987 6899999999999998764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-06 Score=111.95 Aligned_cols=265 Identities=13% Similarity=0.032 Sum_probs=155.0
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeec-cccccccccC--CCCCCEEEEEEccCCCEEEEEE-CC
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTA-ISAEIEHIDL--EPGDSITAFDYLMEKEALIVGT-SS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~~~--~~~~~v~~v~~spd~~~La~as-~d 96 (1196)
.+..+++|+.++.||++. .++.|..+|.+ .+.. ..+.. -+.++..-++ ..-..+.+|++.++++.|.++. .+
T Consensus 569 ~P~gvavd~~~g~lyVaDs~n~rI~v~d~~--G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 569 FPGKLAIDLLNNRLFISDSNHNRIVVTDLD--GNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred CCceEEEECCCCeEEEEECCCCeEEEEeCC--CCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 345789999988899884 46679899873 2211 11110 0000000000 0014578999999998776654 45
Q ss_pred CcEEEEECCCCeEEEe-ee------ec----------CcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccc
Q 000992 97 GLLLLHSVDGNATEVV-GR------VE----------GGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~v-g~------~~----------~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+.|+.+|..++.+.++ |. .. ..-+.++|+| +|.+.++.+++++|.+|+.....+........
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 6788899988777643 21 00 1125799999 56666777788899888643222221111000
Q ss_pred c---CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--cc-----------CC
Q 000992 159 A---EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--EL-----------KA 222 (1196)
Q Consensus 159 ~---~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~-----------~~ 222 (1196)
. .+.......| ..-..|+|+|||+++. ++. .++++|++||..+|...... .+ .+
T Consensus 726 ~~~~~g~~~~~~~~----~~P~GIavspdG~~LY-VAD-----s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 726 ERNLNGSSGTSTSF----AQPSGISLSPDLKELY-IAD-----SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred cccCCCCccccccc----cCccEEEEeCCCCEEE-EEE-----CCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 0 0000000011 2336799999998665 443 24689999998666532111 00 01
Q ss_pred C--------ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-----------CCCcEEEEEEccC
Q 000992 223 F--------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-----------IDSTVELLKWNCM 283 (1196)
Q Consensus 223 ~--------~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-----------~~~~V~~laWSpD 283 (1196)
+ .-..++|+|+|+++++-+. .+.|+.|+.++.....+.-.+. .-.....|+++||
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 1 1258999999997766554 3689999976533222110000 0124678999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+++++-+.+. +|++|+..+..
T Consensus 870 G~lyVaDt~Nn---~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTNNS---LIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECCCC---EEEEEECCCCc
Confidence 99877766666 99999997643
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-07 Score=101.45 Aligned_cols=194 Identities=13% Similarity=0.219 Sum_probs=134.1
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcC--CCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCcEEE
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVEL 277 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsP--dG~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~ 277 (1196)
.+.||+||..+|+.+..+.++++.+..+.|.- .+..+-|++.| .+|++|+..-. +...+....+....-..
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ 122 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQAESARISWTQQSGTPFIC 122 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccC------CeEEEEEeecchhhhheeccCCCCCcceE
Confidence 58999999999999999999999889999977 56778888876 46999994211 11111111221234667
Q ss_pred EEEccCCCeeEEEEccCCcc-eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecC
Q 000992 278 LKWNCMSDLLAAVVRFEEYD-SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~-~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1196)
++-+..+.++|.++.-.... .|.|||+.+..-.+.+-...|.++++.+.|||.+|..|..++-||-+.. |++.-+
T Consensus 123 ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnl----fD~~~d 198 (376)
T KOG1188|consen 123 LDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNL----FDTKKD 198 (376)
T ss_pred eeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEe----eecCCC
Confidence 88888999999997644222 7999999875422222233455667999999999998888777775543 333211
Q ss_pred CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
+-..++ ..++-+.+.|..+.|..++= +.|-..++.+++.+|++....+
T Consensus 199 ---------------------~EeDaL-~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 199 ---------------------NEEDAL-LHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ---------------------cchhhH-HHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCCh
Confidence 111111 13345677899999999873 5799999999999999986543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-06 Score=96.49 Aligned_cols=325 Identities=14% Similarity=0.179 Sum_probs=181.7
Q ss_pred cEEEEECCCCe--EEEeeee--cCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccC
Q 000992 98 LLLLHSVDGNA--TEVVGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 ~I~lw~~~~~~--~e~vg~~--~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.+.+|+..+.. ....+.. ....+..++||+|+++|..+++ .|+|.+..-. ++-...+
T Consensus 12 ~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-~v~i~~~~~~~~~lt~~~----------------- 73 (566)
T KOG2315|consen 12 GFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-VVKVFEIATLKVVLCVEL----------------- 73 (566)
T ss_pred eeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-eEEEEEccCCcEEEEecc-----------------
Confidence 37788865421 1122221 3346789999999999998876 5655432111 1111111
Q ss_pred CCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
..+..+-|||-|.||.| ..+- ..+..-+++|+.++|...+........-+.+.||+|-.+.|=..
T Consensus 74 -~~~~~L~fSP~g~yL~T---~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv----- 144 (566)
T KOG2315|consen 74 -KKTYDLLFSPKGNYLLT---WEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLV----- 144 (566)
T ss_pred -ceeeeeeeccccccccc---ccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhh-----
Confidence 13478999999999972 1111 01234588999988766655432222226899999988765332
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCC--eeEEEEccCCc--ceEEEEEec--CCEEEEEEEEEEecC
Q 000992 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEY--DSVKICFFS--NNHWYLKYEIRYLRR 320 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~--~LAs~~~d~~~--~~V~lW~~~--n~~wylkq~l~~~~~ 320 (1196)
.+.|.||+.++-..-.-.|+ ...|..+++||-++ .+|+-.-..++ ..|+||... +.|--+ ..-.|...
T Consensus 145 --~nev~f~~~~~f~~~~~kl~---~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-a~ksFFka 218 (566)
T KOG2315|consen 145 --SNEVQFYDLGSFKTIQHKLS---VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-ANKSFFKA 218 (566)
T ss_pred --cceEEEEecCCccceeeeee---ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-hhcccccc
Confidence 25799999776322221232 34688999999866 45543322221 279999877 333111 01112223
Q ss_pred CcEEEEEccCCCceEEEEec--------------------CCcE---------EEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 321 DGIRFMWHPTKPLQLICWTL--------------------DGQI---------TTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~--------------------~g~~---------~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
+...+.|.+-+.-.|.+.+. +|.- -++++.|+.+....++|..-=-.++.+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 34667888766543333321 1110 024444443211111111112233444
Q ss_pred eeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccccccCCceeeeeecccccCC
Q 000992 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d---g~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (1196)
.+++..+| +.+ -+++=+++-|+|.| ++|+.++-+ |.|.+||+.+..++..+. ..
T Consensus 299 fnlr~~~v------~df-~egpRN~~~fnp~g--~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--------------a~ 355 (566)
T KOG2315|consen 299 FNLRGKPV------FDF-PEGPRNTAFFNPHG--NIILLAGFGNLPGDMEVWDVPNRKLIAKFK--------------AA 355 (566)
T ss_pred EcCCCCEe------EeC-CCCCccceEECCCC--CEEEEeecCCCCCceEEEeccchhhccccc--------------cC
Confidence 44443322 111 13455789999999 888877754 899999998754442111 11
Q ss_pred cEEEEEEecCCeEEEEEecCCC----CceEEEEe
Q 000992 449 SVIHLIWLGSHLLLSVSHHGPR----HSNYFRGA 478 (1196)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~~~~----~~~~~~~~ 478 (1196)
...-+.|+|||+++.++.-.+. +.+++|++
T Consensus 356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 3345689999999988776432 67889987
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-06 Score=95.45 Aligned_cols=323 Identities=14% Similarity=0.106 Sum_probs=188.7
Q ss_pred EEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.|+..+.... .+++..=++..++|||-|.+|++.+..| |.+|. ..|+.+.... + ..|..
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-----------------~~V~~ 76 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-----------------PDVKY 76 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeeee-c-----------------CCcee
Confidence 3666654443 5665456789999999999999998774 77875 4455333222 1 24578
Q ss_pred EEEccCCceEEEeeccccc--------c-CCCCEEEEEECCCCcEEEEeccCCCc--ee-EEEEcCCCCeEEEEecCCCC
Q 000992 179 ISWRGDGKYFATLSEFCNS--------S-KLHKRLKVWERDSGTLQASSELKAFM--GA-VLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~--------~-~~d~~irVWd~~~G~l~~~~e~~~~~--v~-slawsPdG~~IAs~s~d~~~ 246 (1196)
+.|||.|+||.|=+ ..+. + +.+..+.|||..+|.+..++...... .+ -+.||-|-++.|=...
T Consensus 77 ~~fSP~~kYL~tw~-~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~---- 151 (561)
T COG5354 77 LDFSPNEKYLVTWS-REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG---- 151 (561)
T ss_pred cccCcccceeeeec-cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc----
Confidence 99999999998422 2111 0 23346999999999999988754433 44 7899999998875532
Q ss_pred CCCCeEEEEeCCCee-EEEE-EeccCCCCcEEEEEEccC--CCeeEEEEccCCc--ceEEEEEecCCEEEEEEEEEEecC
Q 000992 247 NKCPSIVFYERNGLE-RSSF-DINEQIDSTVELLKWNCM--SDLLAAVVRFEEY--DSVKICFFSNNHWYLKYEIRYLRR 320 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~-~~~f-~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~--~~V~lW~~~n~~wylkq~l~~~~~ 320 (1196)
+.+.+++..+.. .+.| .++ ...|...+|||- +..||...-...+ .++++|.+.-..-...+.+ | .-
T Consensus 152 ---~sl~i~e~t~n~~~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f-k~ 223 (561)
T COG5354 152 ---SSLYIHEITDNIEEHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F-KV 223 (561)
T ss_pred ---CeEEEEecCCccccCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E-ee
Confidence 468888853221 1111 111 246889999996 4567877654422 2799999873321111111 1 12
Q ss_pred CcEEEEEccCCCceEEEEec---CC-cE------E------------------EEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 321 DGIRFMWHPTKPLQLICWTL---DG-QI------T------------------TYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~---~g-~~------~------------------~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
+...+.|++.|...|...-. ++ .+ . +.+|.|....+..+++...-...+.++
T Consensus 224 ~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 224 SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeec
Confidence 33678899988764433321 11 11 1 234455433222233332233344455
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC---CcEEEEeCCCCCccc-cccCCceeeeeecccccCC
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD---GCLCVVDLPAPDMLE-DLEGTEFVVEACISETAFG 448 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d---g~v~lw~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 448 (1196)
++++..+ ....+..=+.+.|||.+ +++..++-| |.+.+|+..+.-.+. ++.|.
T Consensus 304 ~lr~Nl~-------~~~Pe~~rNT~~fsp~~--r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~-------------- 360 (561)
T COG5354 304 DLRGNLR-------FYFPEQKRNTIFFSPHE--RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL-------------- 360 (561)
T ss_pred ccccceE-------EecCCcccccccccCcc--cEEEEecCCccccceEEeccCCceEEEEEeecC--------------
Confidence 5543211 01112223567899998 777665554 788999887532221 12221
Q ss_pred cEEEEEEecCCeEEEEEecCCC----CceEEEEe
Q 000992 449 SVIHLIWLGSHLLLSVSHHGPR----HSNYFRGA 478 (1196)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~~~~----~~~~~~~~ 478 (1196)
...-.-|+||++++-++..+.- +.+.+|.+
T Consensus 361 n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 361 NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred CceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 2334469999999877655322 56777776
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-06 Score=85.85 Aligned_cols=203 Identities=12% Similarity=0.086 Sum_probs=128.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC---------CeEEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG---------NATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~---------~~~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
.|.+=+|+|-+++|+.|+.+|+|.+.++.+ ++..++ ..|+++|..++|- | ..|.++ +||.|+=|-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d-~~Lls~-gdG~V~gw~- 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D-DFLLSG-GDGLVYGWE- 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h-hheeec-cCceEEEee-
Confidence 355667899999999999999999988752 233333 4689999999998 3 355544 569997763
Q ss_pred cCceeee-eecccccC---ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 146 DWDLLYE-NPLEELAE---GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 146 ~~d~~~~-~~l~~~~~---~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
|....+ ......-+ ..++.. ..-..|..+.--|...-+. .++ +|+.+.-||.++|+...++.+|
T Consensus 88 -W~E~~es~~~K~lwe~~~P~~~~~----~evPeINam~ldP~enSi~-~Ag------GD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 88 -WNEEEESLATKRLWEVKIPMQVDA----VEVPEINAMWLDPSENSIL-FAG------GDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred -ehhhhhhccchhhhhhcCccccCc----ccCCccceeEeccCCCcEE-Eec------CCeEEEEEEecCCEEEEEEcCC
Confidence 433222 10000000 000000 0002345666666555444 232 5799999999999999999999
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec------cCC-CCcEEEEEEccCCCeeEEEEcc
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN------EQI-DSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~------~~~-~~~V~~laWSpDg~~LAs~~~d 293 (1196)
...++++.-+.....|.||+.|+ +|++|+.. +......... .|+ ..+|-+|+ -|...|..|+..
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp 227 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP 227 (325)
T ss_pred cceeeeeeecccCcceeecCCCc------cEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC
Confidence 99999999977777788888864 69999943 3322211100 111 22454444 456678877666
Q ss_pred CCcceEEEEEecCC
Q 000992 294 EEYDSVKICFFSNN 307 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~ 307 (1196)
. +-||++...
T Consensus 228 ~----lslwhLrss 237 (325)
T KOG0649|consen 228 K----LSLWHLRSS 237 (325)
T ss_pred c----eeEEeccCC
Confidence 5 889987654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.0017 Score=79.90 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=87.4
Q ss_pred EEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC
Q 000992 278 LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME 357 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d 357 (1196)
=+|+|.+..+|.|+.++ .|-+.+.+- -+.+.+...+.+.....|+-.+..-|.....|++
T Consensus 29 sc~~s~~~~vvigt~~G---~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~-------------- 88 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADG---RVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ-------------- 88 (933)
T ss_pred eEEcCCCceEEEeeccc---cEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCC--------------
Confidence 46999999999999998 444333221 1112222222222223344333221222111111
Q ss_pred CeeEEEEcCCEEEEeecccc-CCCCCceeeee---cC-----CCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 358 NSTALVIDGSKILVTPLSLS-LMPPPMYLFSL---KF-----PTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 358 ~~~v~viDg~~l~lt~l~~~-~vpppm~~~~l---~~-----~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
+ ....|++|.+... .--||.|.+++ ++ +.++.+++.|.+- +.+|+|-.||.|.++.-+-....
T Consensus 89 -~-----np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 89 -G-----NPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred -C-----CceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhcc
Confidence 0 0015677776543 22237776322 32 3467889999997 89999999999999976531111
Q ss_pred ccccCCceeeeeecccccCCcEEEEEEecCCeE-EEEEecCCCCceEEEEe
Q 000992 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLL-LSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~l-la~~~~~~~~~~~~~~~ 478 (1196)
|..... . ....+.|..+++..+++. |.++.- ++|.++++
T Consensus 161 ----gsr~~~--~--~~~~~pITgL~~~~d~~s~lFv~Tt---~~V~~y~l 200 (933)
T KOG2114|consen 161 ----GSRQDY--S--HRGKEPITGLALRSDGKSVLFVATT---EQVMLYSL 200 (933)
T ss_pred ----ccceee--e--ccCCCCceeeEEecCCceeEEEEec---ceeEEEEe
Confidence 111111 1 112347899999999876 333322 56677766
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-05 Score=85.89 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=153.5
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.++.++|++++..||++..+ +.|..+......+..+ +......++....-|+.+++|+.|.+|. ..|
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt---------~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT---------FLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------EeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 78899999999999999553 4555444410223321 2222344566679999999999998885 568
Q ss_pred cEEEEECCC-CeEE-E--eeeecCc----------EEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCcc
Q 000992 98 LLLLHSVDG-NATE-V--VGRVEGG----------VRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 ~I~lw~~~~-~~~e-~--vg~~~~~----------I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
.|.++-++. |.+. . +-.|.++ +-++.+.|||++|++.. +...|.++.-+ +-.+....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~-----dg~L~~~~--- 183 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLD-----DGKLTPAD--- 183 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcc-----cCcccccc---
Confidence 888887754 3321 1 1123444 88999999999999884 23355554322 11111111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC--CcEEE--E---ec-c--CCCceeEEEEcC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQA--S---SE-L--KAFMGAVLEWMP 232 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~--G~l~~--~---~e-~--~~~~v~slawsP 232 (1196)
+..+ ....+-..|.|+|+|++.= +-. .-+.+|-||..+. |++.. + +. . ...+...|..+|
T Consensus 184 ---~~~v-~~G~GPRHi~FHpn~k~aY-~v~-----EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 184 ---PAEV-KPGAGPRHIVFHPNGKYAY-LVN-----ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred ---cccc-CCCCCcceEEEcCCCcEEE-EEe-----ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 0011 1123447899999999654 332 1358999998754 33221 1 11 1 223557899999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
||++|-++-+. ...|..|. .+|-+..-+.....+...-....++|+|++|+++..+. +.|.++.++.
T Consensus 254 dGrFLYasNRg-----~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s--d~i~vf~~d~ 322 (346)
T COG2706 254 DGRFLYASNRG-----HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKS--DNITVFERDK 322 (346)
T ss_pred CCCEEEEecCC-----CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCC--CcEEEEEEcC
Confidence 99999887664 23677775 34322211111111122367899999999999999876 4677877764
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-08 Score=115.95 Aligned_cols=256 Identities=15% Similarity=0.085 Sum_probs=174.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.|..+|.-+-.|+.+|+|.-+..|.. .+... . ++.++| .+.|++++-+...-++|++|.|.-|++
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~--et~~~---l----As~rGh----s~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSM--ETARC---L----ASCRGH----SGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeec--cchhh---h----ccCCCC----ccccchhccchhhhhhhhcccCceEEE
Confidence 4778889999999999999998888875 33221 1 225566 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc-Cc-cccc---c---Cccc--
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA-EG-FDVH---E---PELS-- 170 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~-~~-~~Vs---~---tqf~-- 170 (1196)
|.+.++.. .++-.|.+.|++++|||-. +.+.|||+.+|+..|+++.-.+-.... .. ..++ + ..|.
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 99988754 4555579999999999985 678899999998778776544222111 11 1111 1 1111
Q ss_pred -----cCCCCeEEEEEccCCceEEEeeccccc-----cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEE-E
Q 000992 171 -----SSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA-A 239 (1196)
Q Consensus 171 -----~~~~~v~~isWspDG~~lAsvss~d~~-----~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IA-s 239 (1196)
........++|+..+-.|++.++ +.. +..+..+++|+..+|.+...+.+|...+..+.++|=...|| +
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ss-d~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSS-DLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS 413 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccc-cccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh
Confidence 11123345667766666663221 110 12456789999999999999999999999999999888776 4
Q ss_pred EecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 240 VYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++.|+ ...+|+. .|-....+. .+ .+.+..-+||+||+.+|..-.-+ .++|..++..
T Consensus 414 ag~dg------st~iwdi~eg~pik~y~--~g-h~kl~d~kFSqdgts~~lsd~hg---ql~i~g~gqs 470 (1113)
T KOG0644|consen 414 AGYDG------STIIWDIWEGIPIKHYF--IG-HGKLVDGKFSQDGTSIALSDDHG---QLYILGTGQS 470 (1113)
T ss_pred ccCCC------ceEeeecccCCcceeee--cc-cceeeccccCCCCceEecCCCCC---ceEEeccCCC
Confidence 45543 4556763 233222221 12 34677889999999998765544 5777766543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=105.12 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=184.7
Q ss_pred HHHHHHHHhhcChHHHHHHHHhccChhH--HHHHHH-HhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHH
Q 000992 879 EEALKHLLWLADSEAVYEAALGLYDLNL--AAIVAL-NSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIV 955 (1196)
Q Consensus 879 ~~al~~l~~L~d~~~Ly~~ALg~yD~~l--al~vAq-~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~ 955 (1196)
-++|+|...+-+.-..|+.|||.+.-.+ ...|.. -+|.|- -||+-.|.+.+...|++.|..|+|...+++.|..
T Consensus 864 ~e~lrrkf~Id~yl~~ye~ALghl~E~~n~~~Ev~~yi~~hdl---y~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~ 940 (1243)
T COG5290 864 LEALRRKFSIDNYLSIYESALGHLNEDLNVIREVMKYICRHDL---YDFLLLLYRYDGELQKFKINIFAGNLVDNLYHIS 940 (1243)
T ss_pred hHHHHhHhchhhhHHHHHHHHHhhHhHHHHHHHHHHHHHhccc---hHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHH
Confidence 3779999999999999999999998655 444444 456666 4777788888899999999999999888888877
Q ss_pred HcCC----CcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHc
Q 000992 956 SMGD----SYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS 1029 (1196)
Q Consensus 956 ~~g~----~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~ 1029 (1196)
++-. -..-||+..++.. .+|.+++.+. ..+.+ .+..|+-|.+ .+...+.++|+-+++...|..+
T Consensus 941 aa~aye~~gK~~Ea~gay~sA-~mwrec~si~~q~~~~e----~~~~AE~L~S-----~l~ve~R~~~da~~i~l~yl~N 1010 (1243)
T COG5290 941 AAKAYEVEGKYIEAHGAYDSA-LMWRECGSISTQEKGYE----FNLCAELLPS-----DLLVEFRKAGDAEKILLTYLEN 1010 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHhhhcchH----HHHHHHhhhh-----hHHHHHHHhcCHHHHHHHHHhC
Confidence 6521 1157888888888 8888888887 34444 5566676655 2555566677777777777777
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhH
Q 000992 1030 GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLI 1109 (1196)
Q Consensus 1030 g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~ 1109 (1196)
-.|..|+.+-.- .++ ...+..++..+.+.-++-+|..+-+.|++.+|.|.++|.+.+--.+++|++...+.
T Consensus 1011 ~~eava~~ckgs-~y~----ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~---- 1081 (1243)
T COG5290 1011 LYEAVAMDCKGS-EYR----EAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKC---- 1081 (1243)
T ss_pred HHHHHHHHcccc-cch----HHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 777666653321 222 34555666667666778889999999999999999999999999999998876542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1110 TKVKHASLECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1196)
Q Consensus 1110 e~v~~~l~e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~ 1146 (1196)
..|..-+...+..+.+.|.+.++.+|..|+..+-+
T Consensus 1082 --e~p~a~~~~~~e~~t~dDvs~a~~~~st~~s~~t~ 1116 (1243)
T COG5290 1082 --EMPEAREILREELLTLDDVSEAFVKYSTRLSALTE 1116 (1243)
T ss_pred --cChHHHHhhhhhhcCccchhhhhhhhhhHHHHHHH
Confidence 36666677777788899999999999999877755
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3e-06 Score=99.70 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=107.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEG 161 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~ 161 (1196)
|...|+.|...|.|.+|+..++++. ..|.|.++|.++.|+.+-..|=++++|..+..|.- ....+..
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~--------- 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI--------- 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee---------
Confidence 5578899999999999999998874 44789999999999999999999999999988762 2222211
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC-----CCe
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS-----GAN 236 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd-----G~~ 236 (1196)
|+.....+.++..+|||+.++ +++ ++|++||.++++...++++|.+.+++++|--+ |.+
T Consensus 140 -------~~~~~~~~~sl~is~D~~~l~-~as--------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~ 203 (541)
T KOG4547|consen 140 -------WKEQKPLVSSLCISPDGKILL-TAS--------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKY 203 (541)
T ss_pred -------eccCCCccceEEEcCCCCEEE-ecc--------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccce
Confidence 112224568999999999999 676 89999999999999999999999999999888 777
Q ss_pred EEEEe
Q 000992 237 IAAVY 241 (1196)
Q Consensus 237 IAs~s 241 (1196)
+.++-
T Consensus 204 vLssa 208 (541)
T KOG4547|consen 204 VLSSA 208 (541)
T ss_pred eeecc
Confidence 66553
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-05 Score=83.81 Aligned_cols=219 Identities=18% Similarity=0.208 Sum_probs=137.0
Q ss_pred eEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCCCEEEEEECCCcEEE
Q 000992 24 QFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-pd~~~La~as~dG~I~l 101 (1196)
.+.+||+.++.||++.- .+.|+.|+. ..+... + +.. ....++.+. ++ ..|.++..+| +.+
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~--~~~~~~--~---------~~~---~~~~G~~~~~~~-g~l~v~~~~~-~~~ 64 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDP--DTGEVE--V---------IDL---PGPNGMAFDRPD-GRLYVADSGG-IAV 64 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEET--TTTEEE--E---------EES---SSEEEEEEECTT-SEEEEEETTC-EEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEEC--CCCeEE--E---------Eec---CCCceEEEEccC-CEEEEEEcCc-eEE
Confidence 57899998888998865 678999998 444331 1 111 238888898 66 5555555544 556
Q ss_pred EECCCCeEEEeee------ecCcEEEEEECCCCCEEEEEeCC--------ceEEEEeccCceeeeeecccccCccccccC
Q 000992 102 HSVDGNATEVVGR------VEGGVRFISPSPDGDLLGVTTGF--------GQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 102 w~~~~~~~e~vg~------~~~~I~~~awSPDg~~LA~~s~d--------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
+|..+++++.+-. .....+.++++|||.+.++-+.. |.|..++.+... . ......
T Consensus 65 ~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~-~~~~~~--------- 133 (246)
T PF08450_consen 65 VDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-T-VVADGL--------- 133 (246)
T ss_dssp EETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEE-E-EEEEEE---------
T ss_pred EecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeE-E-EEecCc---------
Confidence 6998887763222 23468899999999988777654 345444433111 1 111100
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCc-EEE-----EeccCCCceeEEEEcCCCCeEEEE
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGT-LQA-----SSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~-l~~-----~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
..-..|+|+|||+.|. ++. +..+.|..++.+ ++. +.. ......+....+++.++|++.++.
T Consensus 134 ------~~pNGi~~s~dg~~ly-v~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 134 ------GFPNGIAFSPDGKTLY-VAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVAD 201 (246)
T ss_dssp ------SSEEEEEEETTSSEEE-EEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEE
T ss_pred ------ccccceEECCcchhee-ecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEE
Confidence 1337899999999775 332 234677777763 232 221 122222346789999999977664
Q ss_pred ecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEc
Q 000992 241 YDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVR 292 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~ 292 (1196)
-. ...|..++.+|.......++. ..+.+++| .||.+.|-+.+.
T Consensus 202 ~~------~~~I~~~~p~G~~~~~i~~p~---~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 202 WG------GGRIVVFDPDGKLLREIELPV---PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ET------TTEEEEEETTSCEEEEEE-SS---SSEEEEEEESTTSSEEEEEEB
T ss_pred cC------CCEEEEECCCccEEEEEcCCC---CCEEEEEEECCCCCEEEEEeC
Confidence 43 357999999998877666652 26899999 588888877653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-05 Score=83.10 Aligned_cols=256 Identities=14% Similarity=0.160 Sum_probs=153.0
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
+-.-+|.+-...++.++.+++|....+++--.... .=+..+.-.++.. .+.|.+++|. ...|.+++ ||.|+=
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 33446667677788888888888777742111000 0000011112222 4678999998 34566654 699998
Q ss_pred EECCC-------Ce-EE-----Eeeeec-CcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCcccccc
Q 000992 102 HSVDG-------NA-TE-----VVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 102 w~~~~-------~~-~e-----~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
|.-.. ++ .+ -++..+ ..|+++..-|....|.++++|+.+.-|+.. +....
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r--------------- 150 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR--------------- 150 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---------------
Confidence 75432 11 11 222222 359999999999999999999999776532 21111
Q ss_pred CccccCCCCeEEEEE-ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC----------ceeEEEEcCCCC
Q 000992 167 PELSSSFSFKSPISW-RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF----------MGAVLEWMPSGA 235 (1196)
Q Consensus 167 tqf~~~~~~v~~isW-spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~----------~v~slawsPdG~ 235 (1196)
.|++|++.+.++.= +..|+.|. ++ +|+++||||..+++..++.++.+. ++.+++- +..
T Consensus 151 -~~rGHtDYvH~vv~R~~~~qils--G~------EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~ed 219 (325)
T KOG0649|consen 151 -EYRGHTDYVHSVVGRNANGQILS--GA------EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NED 219 (325)
T ss_pred -EEcCCcceeeeeeecccCcceee--cC------CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCc
Confidence 24578888899888 45666553 54 589999999999999998876432 3334432 333
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
++.+|+. ..+.+|.. .-.....|.++ +.|..+.|-.| .+|+. +..+ .|+-|+.+. .++..
T Consensus 220 WlvCGgG-------p~lslwhLrsse~t~vfpip----a~v~~v~F~~d-~vl~~-G~g~---~v~~~~l~G---vl~a~ 280 (325)
T KOG0649|consen 220 WLVCGGG-------PKLSLWHLRSSESTCVFPIP----ARVHLVDFVDD-CVLIG-GEGN---HVQSYTLNG---VLQAN 280 (325)
T ss_pred eEEecCC-------CceeEEeccCCCceEEEecc----cceeEeeeecc-eEEEe-cccc---ceeeeeecc---EEEEe
Confidence 6666654 35778873 33333334433 35777777544 34444 3333 699999876 34444
Q ss_pred EEEecCCcEEEEEccC
Q 000992 315 IRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 315 l~~~~~~~~~v~Wsp~ 330 (1196)
+.+.+..-.+..|+..
T Consensus 281 ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 281 IPVESTACYSASWQTS 296 (325)
T ss_pred ccCCccceeeecccCC
Confidence 5443323366667653
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=105.52 Aligned_cols=206 Identities=9% Similarity=0.056 Sum_probs=123.2
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEECCC-----C--eEEE-eeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc
Q 000992 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDG-----N--ATEV-VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 76 ~~v~~v~~spd~-~~La~as~dG~I~lw~~~~-----~--~~e~-vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~ 146 (1196)
..|..++-+++. ..+++||.||+|++||... + +.+. ..-..+.+.++..-+.|+.+|+++.||.|.++..+
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id 1128 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRID 1128 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcc
Confidence 345566666554 9999999999999999752 1 1221 11134678999999999999999999999887543
Q ss_pred Cceeeee---e-cccccCccccccCccccCCCCeE-EEEEcc-CCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEe-
Q 000992 147 WDLLYEN---P-LEELAEGFDVHEPELSSSFSFKS-PISWRG-DGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASS- 218 (1196)
Q Consensus 147 ~d~~~~~---~-l~~~~~~~~Vs~tqf~~~~~~v~-~isWsp-DG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~- 218 (1196)
-...... . ..+.. ..++.++ .-++-. ++. .++ .++ .-+.|-.||...-.-.++.
T Consensus 1129 ~~~~~~~~~~~~ri~n~-----------~~~g~vv~m~a~~~~~~S~~lv-y~T------~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1129 HYNVSKRVATQVRIPNL-----------KKDGVVVSMHAFTAIVQSHVLV-YAT------DLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred ccccccceeeeeecccc-----------cCCCceEEeecccccccceeEE-EEE------eccceEEecchhhhhHHhhh
Confidence 2111000 0 00000 0011122 222322 222 344 333 3577889997444333333
Q ss_pred -ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEcc---CCCeeEEEEcc
Q 000992 219 -ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNC---MSDLLAAVVRF 293 (1196)
Q Consensus 219 -e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~LAs~~~d 293 (1196)
++..|.+++++-+|-|++++.|+. ++.+.+||. -+.....+. -|+...+..+.-.| ......+++..
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts------~G~l~lWDLRF~~~i~sw~--~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTS------RGQLVLWDLRFRVPILSWE--HPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecC------CceEEEEEeecCceeeccc--CcccCCcceEEeeccCCCCceEEEeccc
Confidence 346789999999999999999976 456999993 222222222 22334566666554 34455555542
Q ss_pred CCcceEEEEEecCCE
Q 000992 294 EEYDSVKICFFSNNH 308 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~ 308 (1196)
+ .+-|-+|++.+++
T Consensus 1263 ~-~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1263 S-NNEVSTWNMETGL 1276 (1431)
T ss_pred C-CCceeeeecccCc
Confidence 2 1259999998875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-05 Score=92.83 Aligned_cols=350 Identities=12% Similarity=0.129 Sum_probs=195.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---- 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG---- 97 (1196)
+....++.+.|--|++....+ |..|.- ..+.. +..+. ...|..+.|||.+++|.+=+.-+
T Consensus 34 p~~~~~~SP~G~~l~~~~~~~-V~~~~g--~~~~~----------l~~~~---~~~V~~~~fSP~~kYL~tw~~~pi~~p 97 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAAG-VECWGG--PSKAK----------LVRFR---HPDVKYLDFSPNEKYLVTWSREPIIEP 97 (561)
T ss_pred chhheeecCcchheehhhccc-eEEccc--cchhh----------eeeee---cCCceecccCcccceeeeeccCCccCh
Confidence 455677888777666655555 888876 33321 22221 35799999999999998754333
Q ss_pred -----------cEEEEECCCCeEE-EeeeecCc--EE-EEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcc
Q 000992 98 -----------LLLLHSVDGNATE-VVGRVEGG--VR-FISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 -----------~I~lw~~~~~~~e-~vg~~~~~--I~-~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
.+.+||..++.+- ........ .+ -+.||-|..++|-..++ .+.+... .+-+.+.+.+..
T Consensus 98 e~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~l---- 171 (561)
T COG5354 98 EIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNL---- 171 (561)
T ss_pred hhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC-eEEEEec-CCccccCchhhc----
Confidence 3889999887653 22222333 55 78999999999988665 4544321 111222222211
Q ss_pred ccccCccccCCCCeEEEEEccCCc--eEEEeeccccc-cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGK--YFATLSEFCNS-SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~--~lAsvss~d~~-~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
...++...+|||-|. -||+ .-++ ....++++||..--+..+.+-.-..-.-..+-|.+.|+.|..
T Consensus 172 ---------r~~gi~dFsisP~~n~~~la~---~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~ 239 (561)
T COG5354 172 ---------RPVGILDFSISPEGNHDELAY---WTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLV 239 (561)
T ss_pred ---------cccceeeEEecCCCCCceEEE---EccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEE
Confidence 124678999999754 4552 2222 135789999998655555432211112268999999998765
Q ss_pred Eec-CC-C---CCCCCeEEEEeCCCeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 240 VYD-RK-S---ENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 240 ~s~-d~-~---~~~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
--. +. + .=....+-++... ++.++. ...+.|.+.+|+|+|+..|+.+.-.+ .++-++++...-
T Consensus 240 l~~t~~ksnKsyfgesnLyl~~~~-----e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p-a~~s~~~lr~Nl---- 309 (561)
T COG5354 240 LVMTHTKSNKSYFGESNLYLLRIT-----ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP-ASVSVFDLRGNL---- 309 (561)
T ss_pred EEEEeeecccceeccceEEEEeec-----ccccceeccccccceeeeecccCCceeEEecccc-cceeecccccce----
Confidence 322 10 0 0001223333321 222331 12467999999999999998773221 156677765321
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEec--CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTL--DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~--~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
...+++.....+.|+|.+...|..+.. .|.+. +|+.. |+...++.|...
T Consensus 310 -~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~----i~~~~-----------~rf~~~~~~~~~------------- 360 (561)
T COG5354 310 -RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE----IFDPA-----------GRFKVAGAFNGL------------- 360 (561)
T ss_pred -EEecCCcccccccccCcccEEEEecCCccccceE----EeccC-----------CceEEEEEeecC-------------
Confidence 112222233667788887664433221 22222 23221 222222222111
Q ss_pred CCCEEEEEEecCCCCCEEEEE------ECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEE
Q 000992 391 PTAVTEMAFYSKSSKNCLAAI------LSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~------~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1196)
+-.-+.||||| +.+-+. -.|+.++||+..+.. ...+.++.|-|.|++.-+
T Consensus 361 --n~s~~~wspd~--qF~~~~~ts~k~~~Dn~i~l~~v~g~~--------------------~fel~~~~W~p~~~~~tt 416 (561)
T COG5354 361 --NTSYCDWSPDG--QFYDTDTTSEKLRVDNSIKLWDVYGAK--------------------VFELTNITWDPSGQYVTT 416 (561)
T ss_pred --CceEeeccCCc--eEEEecCCCcccccCcceEEEEecCch--------------------hhhhhhccccCCccccee
Confidence 11234588998 555443 247899999987421 124667788888877655
Q ss_pred EecC
Q 000992 465 SHHG 468 (1196)
Q Consensus 465 ~~~~ 468 (1196)
.+.+
T Consensus 417 sSs~ 420 (561)
T COG5354 417 SSSC 420 (561)
T ss_pred eccC
Confidence 5443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=111.81 Aligned_cols=266 Identities=11% Similarity=0.108 Sum_probs=171.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
+.| |-+.|.|+.|.--|..+.+++.|..|++|+.. ++.++.... ||...+..++-+....++|
T Consensus 186 Llg-H~naVyca~fDrtg~~Iitgsdd~lvKiwS~e----t~~~lAs~r-----------Ghs~ditdlavs~~n~~ia- 248 (1113)
T KOG0644|consen 186 LLG-HRNAVYCAIFDRTGRYIITGSDDRLVKIWSME----TARCLASCR-----------GHSGDITDLAVSSNNTMIA- 248 (1113)
T ss_pred HHh-hhhheeeeeeccccceEeecCccceeeeeecc----chhhhccCC-----------CCccccchhccchhhhhhh-
Confidence 455 46889999999999999999999999998732 333443333 6777788899888888888
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-- 268 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-- 268 (1196)
.+| .|..||||-..+|.+++.+.+|.|.|++|+|||-- +++.| .++++|+.. +....|.-+
T Consensus 249 aaS------~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~d------gt~~~wd~r-~~~~~y~prp~ 311 (1113)
T KOG0644|consen 249 AAS------NDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDD------GTCRIWDAR-LEPRIYVPRPL 311 (1113)
T ss_pred hcc------cCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCC------CceEecccc-ccccccCCCCC
Confidence 565 47999999999999999999999999999999965 55554 469999854 111222111
Q ss_pred -cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC-------------cEEEEEccCCCce
Q 000992 269 -EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD-------------GIRFMWHPTKPLQ 334 (1196)
Q Consensus 269 -~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~-------------~~~v~Wsp~~~~~ 334 (1196)
......+-++-|-..|.-.++++.|+ .-+.|...-..|.-. -+.|.... .....|.--.+..
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~---ea~n~e~~~l~~~~~-~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDG---EARNHEFEQLAWRSN-LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred CcccccceeeeeccccccccccccCCc---ccccchhhHhhhhcc-ceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 11124577888888888889998888 555665543333100 11111100 0223343322222
Q ss_pred EEEEecCCcEEEEEEEEeeecCCC--eeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE
Q 000992 335 LICWTLDGQITTYNFIWTTAVMEN--STALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 335 L~~~~~~g~~~~~~~~~~~~~~d~--~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
+++... +....++-++.|.+. .+.+.-||+++ +|++-.+ .||-.+.+.| ..+.+-.||+|| +.++...
T Consensus 388 ~H~l~g---hsd~~yvLd~Hpfn~ri~msag~dgst~-iwdi~eg---~pik~y~~gh-~kl~d~kFSqdg--ts~~lsd 457 (1113)
T KOG0644|consen 388 LHNLMG---HSDEVYVLDVHPFNPRIAMSAGYDGSTI-IWDIWEG---IPIKHYFIGH-GKLVDGKFSQDG--TSIALSD 457 (1113)
T ss_pred hhhhcc---cccceeeeeecCCCcHhhhhccCCCceE-eeecccC---Ccceeeeccc-ceeeccccCCCC--ceEecCC
Confidence 222221 112333444444332 23455577765 5665432 3666666664 345677899999 8888887
Q ss_pred CCCcEEEEeCCC
Q 000992 413 SDGCLCVVDLPA 424 (1196)
Q Consensus 413 ~dg~v~lw~~~~ 424 (1196)
.-|.+.|.....
T Consensus 458 ~hgql~i~g~gq 469 (1113)
T KOG0644|consen 458 DHGQLYILGTGQ 469 (1113)
T ss_pred CCCceEEeccCC
Confidence 778888887643
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.7e-06 Score=93.38 Aligned_cols=147 Identities=13% Similarity=0.217 Sum_probs=100.4
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEE-ECCCcEEEEECCCCe
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVG-TSSGLLLLHSVDGNA 108 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~~ 108 (1196)
..+.|.++.+.. |+.|+.+ .+.-+ +..+...+ ..++-++....+...||.- ..-|.|.|.++...+
T Consensus 103 ~r~riVvvl~~~-I~VytF~--~n~k~---------l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 103 RRDRIVVVLENK-IYVYTFP--DNPKL---------LHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred cCCeEEEEecCe-EEEEEcC--CChhh---------eeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 456777777766 8888862 12111 11111112 2346666666666666653 456999999987644
Q ss_pred E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 109 T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 109 ~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
. .++.+|++.|.|++.+-||.+||++|..||++ +|+ .++..+.|..-..+. ..+.+|+|||
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--------------A~iy~iaFSp 236 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--------------ADIYCIAFSP 236 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--------------heEEEEEeCC
Confidence 4 57888999999999999999999999999975 443 344444444332221 3579999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECC
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERD 210 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~ 210 (1196)
|+.+|| ++| ..+|+.|+...
T Consensus 237 ~~s~La-vsS------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 237 NSSWLA-VSS------DKGTLHIFSLR 256 (346)
T ss_pred CccEEE-EEc------CCCeEEEEEee
Confidence 999999 887 35899999763
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-05 Score=91.26 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=102.6
Q ss_pred ccCCCEEEEE---------ECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 84 LMEKEALIVG---------TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 84 spd~~~La~a---------s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
|||++.++++ +..+++.+||..++++..+......+..+.|||||+.||.+.+ ++|.+.+.... .+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~--~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATG--QETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTS--EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEec-CceEEEECCCC--CeEE
Confidence 6888888874 3457899999999888755544677999999999999999986 47877643222 2233
Q ss_pred cccccCcc-------ccc-cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC--Cc
Q 000992 155 LEELAEGF-------DVH-EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--FM 224 (1196)
Q Consensus 155 l~~~~~~~-------~Vs-~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--~~ 224 (1196)
+..+.... +|- |..| +.-..+-|||||++|| ....| ++.|+.+.. .....+.. ..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~----~~~~~~~WSpd~~~la-~~~~d-----~~~v~~~~~-----~~~~~~~~~yp~ 142 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVF----DRRSAVWWSPDSKYLA-FLRFD-----EREVPEYPL-----PDYSPPDSQYPE 142 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTS----SSSBSEEE-TTSSEEE-EEEEE------TTS-EEEE-----EEESSSTESS-E
T ss_pred eccccceeEEcCccceecccccc----ccccceEECCCCCEEE-EEEEC-----CcCCceEEe-----eccCCccccCCc
Confidence 33222000 010 1112 2235799999999999 45444 344444332 00000000 01
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCcc--eE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYD--SV 299 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~--~V 299 (1196)
+..+.+---|.-.+ ...+.+++..+....+..++ .....-+..+.|++|++.|++...++..+ .+
T Consensus 143 ~~~~~YPk~G~~np----------~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 143 VESIRYPKAGDPNP----------RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp EEEEE--BTTS-------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred ccccccCCCCCcCC----------ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 23333322232221 12355567655443333333 22345688999999999555544444333 55
Q ss_pred EEEEecC
Q 000992 300 KICFFSN 306 (1196)
Q Consensus 300 ~lW~~~n 306 (1196)
.+.+..+
T Consensus 213 ~~~d~~t 219 (353)
T PF00930_consen 213 VLCDAST 219 (353)
T ss_dssp EEEEECT
T ss_pred EEEECCC
Confidence 5666644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-07 Score=105.26 Aligned_cols=196 Identities=16% Similarity=0.018 Sum_probs=152.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
-.+..+.|+.+|+.|++++..|-|...|..++.+.+--.+...|..+.|=...+++|++-.. -+.+++..+..+..+.-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-y~yvYD~~GtElHClk~ 208 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-YVYVYDNNGTELHCLKR 208 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhc-eEEEecCCCcEEeehhh
Confidence 46789999999999999999999999999988765333345679999999999999988654 56777665543332221
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
...+..+.|-|---+|| .++ ..+-++--|..+|++.+.+....|.+..++=+|-..
T Consensus 209 -----------------~~~v~rLeFLPyHfLL~-~~~------~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 209 -----------------HIRVARLEFLPYHFLLV-AAS------EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred -----------------cCchhhhcccchhheee-ecc------cCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 13567888999887777 343 347888889999999988877778888899999988
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|-.|-. .++|.+|..|-.. .-.. .-+.+.|.+||+.++|.++|+++.|+ .|+|||+.++.
T Consensus 265 Vih~Ghs------nGtVSlWSP~ske---PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~ 326 (545)
T KOG1272|consen 265 VIHLGHS------NGTVSLWSPNSKE---PLVKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY 326 (545)
T ss_pred eEEEcCC------CceEEecCCCCcc---hHHHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc
Confidence 8888765 3579999987421 1011 22457899999999999999999999 89999999863
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.4e-07 Score=110.79 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=150.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeec----CcEEEEEECCCCCEEEEEeCCceEEEEeccCcee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVE----GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~----~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
++|..-.++-+...+++++.+..+.+|+...+.+ ..+++-+ ....-+-+|++.=++|+++--+.|++|....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--- 164 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--- 164 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---
Confidence 5666677788889999999999999999876432 1122111 1223355788988999999999999874221
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~v~sla 229 (1196)
.. +++ ...+|.+.+.++.||-||.|+||+ | .||++|+|+.++++... +.=+|...++.+.
T Consensus 165 dn---------~p~---~l~GHeG~iF~i~~s~dg~~i~s~-S------dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 165 DN---------KPI---RLKGHEGSIFSIVTSLDGRYIASV-S------DDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred cC---------Ccc---eecccCCceEEEEEccCCcEEEEE-e------cCcceeeeecccccccCcccccccceeEEEE
Confidence 11 111 123788999999999999999954 4 48999999998887776 5567999999999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+.|+ .|++++.| -+.++|.-||.....+ .++....++.++-.++.-++.+++.|+ ++++|+..+
T Consensus 226 ~~~n--~i~t~ged------ctcrvW~~~~~~l~~y--~~h~g~~iw~~~~~~~~~~~vT~g~Ds---~lk~~~l~~ 289 (967)
T KOG0974|consen 226 FLPN--RIITVGED------CTCRVWGVNGTQLEVY--DEHSGKGIWKIAVPIGVIIKVTGGNDS---TLKLWDLNG 289 (967)
T ss_pred eccc--eeEEeccc------eEEEEEecccceehhh--hhhhhcceeEEEEcCCceEEEeeccCc---chhhhhhhc
Confidence 9999 89999986 4688999898766533 333345699999999999999999999 999999765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.4e-07 Score=104.16 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=135.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
..-+++++.-+.-||++.....+|..++ .++-. |. ||.. .+.++.|...+.-..||+|+.+|.|-
T Consensus 135 ~GRDm~y~~~scDly~~gsg~evYRlNL--EqGrf----------L~--P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGSGSEVYRLNL--EQGRF----------LN--PFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred CCccccccCCCccEEEeecCcceEEEEc--ccccc----------cc--ccccccccceeeeecCccceEEecccCceEE
Confidence 4567888888888999877667999999 55543 21 1111 36899999999999999999999999
Q ss_pred EEECCCC----eEE---EeeeecCc-----EEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCc
Q 000992 101 LHSVDGN----ATE---VVGRVEGG-----VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 101 lw~~~~~----~~e---~vg~~~~~-----I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
.||+.+. .++ .|.++.++ |++++|+-||=.+|+||.+|.|.+.+ .-+..++-..++
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD----LRa~~pl~~kdh-------- 268 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD----LRASKPLLVKDH-------- 268 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE----cccCCceeeccc--------
Confidence 9999763 333 23334444 99999999999999999999998864 223333222221
Q ss_pred cccCCCCeEEEEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 169 LSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 169 f~~~~~~v~~isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
+..-.|..+.|-+. +..++ + . ..+.+||||..+|+.....|+..+ +..+++=|++-++-++...
T Consensus 269 --~~e~pi~~l~~~~~~~q~~v~--S-~-----Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 269 --GYELPIKKLDWQDTDQQNKVV--S-M-----DKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANES 334 (703)
T ss_pred --CCccceeeecccccCCCceEE--e-c-----chHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCC
Confidence 11235688999554 44555 2 2 348999999999999999888766 6899999999888887653
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=102.89 Aligned_cols=193 Identities=13% Similarity=0.049 Sum_probs=121.3
Q ss_pred CCEEEEEEccCCCEEEEE---ECC-CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCcee
Q 000992 76 DSITAFDYLMEKEALIVG---TSS-GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLL 150 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a---s~d-G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~ 150 (1196)
..+..=.|+|+++.++-. ... ..|.++++++++-+.+....+.-..-+|||||+.||.++ .||+.-+|.-+.+..
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 456777899999987644 222 358999999987776666666677899999999999986 466655554332222
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
....+.... +. -..-+|+|||++++++++.. +.-.|-+.|++.+..........+. ..-.|
T Consensus 273 ~~~~Lt~~~-----------gi---~~~Ps~spdG~~ivf~Sdr~----G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~ 333 (425)
T COG0823 273 NLPRLTNGF-----------GI---NTSPSWSPDGSKIVFTSDRG----GRPQIYLYDLEGSQVTRLTFSGGGN-SNPVW 333 (425)
T ss_pred cceecccCC-----------cc---ccCccCCCCCCEEEEEeCCC----CCcceEEECCCCCceeEeeccCCCC-cCccC
Confidence 211122111 11 13789999999999655432 3446778888555444433322222 37789
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
||||++||..+...+ ...|...+.+.-. .. .+. .......-+|+|||+.+...+...
T Consensus 334 SpdG~~i~~~~~~~g---~~~i~~~~~~~~~~~~--~lt--~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 334 SPDGDKIVFESSSGG---QWDIDKNDLASGGKIR--ILT--STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CCCCCEEEEEeccCC---ceeeEEeccCCCCcEE--Ecc--ccccCCCCCcCCCCceEEEeccCC
Confidence 999999999885422 2556666643211 11 121 122344678999999887766544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.5e-07 Score=97.35 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=132.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC---CeEE---Eeee------------ecCcEEEEEECCCCCE--EEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG---NATE---VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~---~~~e---~vg~------------~~~~I~~~awSPDg~~--LA~~ 134 (1196)
.+-|.+|.|..+|+.||+|-.+|.|.++..+. ++.. ...+ ++..|+.++|-++|+. ..+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35689999999999999999999999987642 1111 1111 2357999999999874 5566
Q ss_pred eCCceEEEEeccCceeee--eecccccCcccccc------C------------cc-ccCCCCeEEEEEccCCceEEEeec
Q 000992 135 TGFGQILVMTHDWDLLYE--NPLEELAEGFDVHE------P------------EL-SSSFSFKSPISWRGDGKYFATLSE 193 (1196)
Q Consensus 135 s~d~tV~l~~~~~d~~~~--~~l~~~~~~~~Vs~------t------------qf-~~~~~~v~~isWspDG~~lAsvss 193 (1196)
+.|+||++|...-..... ..+........++. + .| .+|+-.+.+|+...|+++|. ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 889999999521110000 00000000111110 0 01 16778899999999999998 44
Q ss_pred cccccCCCCEEEEEECC-CCcEEEEe--ccC-----CCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCC----e
Q 000992 194 FCNSSKLHKRLKVWERD-SGTLQASS--ELK-----AFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNG----L 260 (1196)
Q Consensus 194 ~d~~~~~d~~irVWd~~-~G~l~~~~--e~~-----~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nG----l 260 (1196)
.|=.|-+|+.+ +.+.-.+- .|+ ...+++--|+|.-. +++-++. +++|++.+.-- .
T Consensus 183 ------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS------KGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 183 ------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS------KGTIRLCDMRQSALCD 250 (433)
T ss_pred ------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC------CCcEEEeechhhhhhc
Confidence 25689999984 22222211 222 22357888999754 4454444 45799988420 1
Q ss_pred eE-EEEEeccCC---------CCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 261 ER-SSFDINEQI---------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 261 ~~-~~f~l~~~~---------~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.| ..|..+... -.+|.++.||++|+++.+-..- +|+|||.+
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl----tvk~wD~n 301 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL----TVKLWDLN 301 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc----eeEEEecc
Confidence 12 223333111 1358899999999999987655 69999984
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-05 Score=88.72 Aligned_cols=267 Identities=15% Similarity=0.163 Sum_probs=156.0
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE---------
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--------- 94 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as--------- 94 (1196)
+.+-|.|-|--|.+.-.-+ |..|--. .-. ++. -+ +...|.-+.|||.-++|++=+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~--~f~---r~~-------RF---~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~ 277 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGE--SFD---RIQ-------RF---YHPGVQFIDFSPNEKYLVTYSPEPIIVEED 277 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCc--cHH---HHH-------hc---cCCCceeeecCCccceEEEecCCccccCcc
Confidence 4456667666666555554 6667541 111 011 11 134789999999999999754
Q ss_pred --CCCcEEEEECCCCeEE-Eeeeec--CcEE-EEEECCCCCEEEEEeCCceEEEE-eccCceeeeeecccccCccccccC
Q 000992 95 --SSGLLLLHSVDGNATE-VVGRVE--GGVR-FISPSPDGDLLGVTTGFGQILVM-THDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 95 --~dG~I~lw~~~~~~~e-~vg~~~--~~I~-~~awSPDg~~LA~~s~d~tV~l~-~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
+...++|||..||.+. ....+. -.++ -..||.|++++|-.++++ |.+. +..+.++-...+..
T Consensus 278 d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~Kslki---------- 346 (698)
T KOG2314|consen 278 DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDKKSLKI---------- 346 (698)
T ss_pred cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceeeecccccCC----------
Confidence 2356899999998653 222111 2233 479999999999999974 5443 33344433333222
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccc-cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNS-SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~-~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
++|...+|||-++.||. = -++ ......+-+-..-+++.+.+-.-+.=.-..+-|..+|.+|+.--+..+.
T Consensus 347 ------~gIr~FswsP~~~llAY-w--tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK 417 (698)
T KOG2314|consen 347 ------SGIRDFSWSPTSNLLAY-W--TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTK 417 (698)
T ss_pred ------ccccCcccCCCcceEEE-E--cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecc
Confidence 46788999999999883 2 222 0112344444444444444322222122568899999999876543220
Q ss_pred CC----CCeEEEEeCCCeeEEEEEec---cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CC-EEEEEEEEEE
Q 000992 247 NK----CPSIVFYERNGLERSSFDIN---EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NN-HWYLKYEIRY 317 (1196)
Q Consensus 247 ~~----~~~V~~~e~nGl~~~~f~l~---~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~-~wylkq~l~~ 317 (1196)
.. -..+-+|... +-.++ .+....|...+|-|.|...|+-+......+|+++... |. .|-|..++
T Consensus 418 ~~~~g~f~n~eIfrir-----eKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~-- 490 (698)
T KOG2314|consen 418 SKVKGQFSNLEIFRIR-----EKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL-- 490 (698)
T ss_pred ccccceEeeEEEEEee-----ccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh--
Confidence 00 0112222210 00111 1123468999999999999998877666689999887 43 34333333
Q ss_pred ecCCcEEEEEccCCCc
Q 000992 318 LRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 318 ~~~~~~~v~Wsp~~~~ 333 (1196)
.......+.|+|.|..
T Consensus 491 dk~~~N~vfwsPkG~f 506 (698)
T KOG2314|consen 491 DKKFANTVFWSPKGRF 506 (698)
T ss_pred cccccceEEEcCCCcE
Confidence 2222377999999986
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0001 Score=83.01 Aligned_cols=213 Identities=17% Similarity=0.132 Sum_probs=137.5
Q ss_pred CEEEEEEcc-CCCEEEEEECCCcEEE-EECCCCeEE-EeeeecCcEE--EEEECCCCCEEEEE-----eCCceEEEEecc
Q 000992 77 SITAFDYLM-EKEALIVGTSSGLLLL-HSVDGNATE-VVGRVEGGVR--FISPSPDGDLLGVT-----TGFGQILVMTHD 146 (1196)
Q Consensus 77 ~v~~v~~sp-d~~~La~as~dG~I~l-w~~~~~~~e-~vg~~~~~I~--~~awSPDg~~LA~~-----s~d~tV~l~~~~ 146 (1196)
+.-+++.+| +...+++|-.-|+..+ ||..+++.. .+..-++.-. -..|||||++|-+. ++.|.|-+|+..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 455678899 6788889999998655 899887543 2221111111 36799999999876 456788888743
Q ss_pred --CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeec--ccccc----------CCCCEEEEEECCCC
Q 000992 147 --WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSE--FCNSS----------KLHKRLKVWERDSG 212 (1196)
Q Consensus 147 --~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss--~d~~~----------~~d~~irVWd~~~G 212 (1196)
+..+.|...+... =-.+.|.|||+.|+ |+- +...+ +-+-.+-.-|..+|
T Consensus 86 ~~~~ri~E~~s~GIG----------------PHel~l~pDG~tLv-VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIG----------------PHELLLMPDGETLV-VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred CCcEEEeEecCCCcC----------------hhhEEEcCCCCEEE-EEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 4445454433221 13588999998887 652 21110 11123445677799
Q ss_pred cEEEEec----cCCCceeEEEEcCCCCeEEEEecCCC-CCCCCeEEEEeCCCeeEEEEEecc----CCCCcEEEEEEccC
Q 000992 213 TLQASSE----LKAFMGAVLEWMPSGANIAAVYDRKS-ENKCPSIVFYERNGLERSSFDINE----QIDSTVELLKWNCM 283 (1196)
Q Consensus 213 ~l~~~~e----~~~~~v~slawsPdG~~IAs~s~d~~-~~~~~~V~~~e~nGl~~~~f~l~~----~~~~~V~~laWSpD 283 (1196)
+++...+ -+.-.+..++|.++|..+...+.... .+...-|.++.+.+.. ..+..+. ...+.|-+|++++|
T Consensus 149 ~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~-~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 149 ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGAL-RLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcc-eeccCChHHHHhhCCceEEEEEeCC
Confidence 9887633 24556899999999998877776543 2223456667765532 2222221 11356999999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
|..+|+.+-.+ +.+.+|+..+..|
T Consensus 228 g~~ia~tsPrG--g~~~~~d~~tg~~ 251 (305)
T PF07433_consen 228 GRLIAVTSPRG--GRVAVWDAATGRL 251 (305)
T ss_pred CCEEEEECCCC--CEEEEEECCCCCE
Confidence 99998877544 5899999988765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.6e-06 Score=101.55 Aligned_cols=244 Identities=14% Similarity=0.020 Sum_probs=157.3
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e- 110 (1196)
...+.++|+|+.|..|+-- ..+....++.|--.+|.+.-.-+.+.=.-+.|-.....|.++++-..|+|||....++.
T Consensus 1123 ~aLlLtas~dGvIRIwk~y-~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDY-ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred hhheeeeccCceEEEeccc-ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 3456778899999999872 33212233322222222211111112256789988888888888889999999874432
Q ss_pred -E-eeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC--eEEEEEccCC
Q 000992 111 -V-VGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF--KSPISWRGDG 185 (1196)
Q Consensus 111 -~-vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~--v~~isWspDG 185 (1196)
+ .| -+..|++++=+-+ |..+|.|-.||.|+++++--.+.. ..| ..++.|.+. |..+++.+.|
T Consensus 1202 diP~~-s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------s~v--~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1202 DIPYG-SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------SLV--CVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred ecccC-CCccceeecccccCCceEEEeecCCceEEeecccCCcc----------ccc--eeecccCCcccceeEEeecCC
Confidence 2 23 2556777655433 699999999999998774322111 001 012234444 8889987655
Q ss_pred ce-EEEeeccccccCCCCEEEEEECCCCcEEEEeccCC----C-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 186 KY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA----F-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 186 ~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~----~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
-- |+ +++ .++.|++||.........+.-.. | ..+++.-+++-..||+|+. ..|++|+..|
T Consensus 1269 ~~elv-Sgs------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-------q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1269 LGELV-SGS------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-------QLIKIYSLSG 1334 (1387)
T ss_pred Cccee-eec------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-------ceEEEEecCh
Confidence 43 55 354 36899999983322222222111 3 3688999999999999986 3599999988
Q ss_pred eeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 260 LERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 260 l~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
...+.+... ++.-+.+.+|+|.|---+||+|+.|. +|-||...+
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds---~V~iYs~~k 1382 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADS---TVSIYSCEK 1382 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCc---eEEEeecCC
Confidence 776654322 22235689999999999999999998 999998765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=89.40 Aligned_cols=268 Identities=12% Similarity=0.101 Sum_probs=151.2
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCce------eeeeeccccc-C-ccccccCccccCCCCeEEEEEccCCc-
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL------LYENPLEELA-E-GFDVHEPELSSSFSFKSPISWRGDGK- 186 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~------~~~~~l~~~~-~-~~~Vs~tqf~~~~~~v~~isWspDG~- 186 (1196)
.+-|.++.|..+|++||+|..+|.|.++.++-.- .++.+.|..+ + -+.+ .-...+..|.|-++|.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSl------eieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSL------EIEEKINKIRWLDDGNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhh------hhhhhhhhceecCCCCc
Confidence 3568999999999999999999999998654211 1222221111 0 0000 1224678999999887
Q ss_pred -eEEEeeccccccCCCCEEEEEECCCCcEEE--E-e--ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 187 -YFATLSEFCNSSKLHKRLKVWERDSGTLQA--S-S--ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 187 -~lAsvss~d~~~~~d~~irVWd~~~G~l~~--~-~--e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
.|. +++ .|++|++|-..+-.... . + +...+.+.++ ++...+..+ ..| +..
T Consensus 99 a~FL-lst------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~l------r~p~~~~~~------~~v---ea~-- 154 (433)
T KOG1354|consen 99 AEFL-LST------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSL------RLPVEGRHD------LEV---EAS-- 154 (433)
T ss_pred cEEE-Eec------CCcceeeeeeeccccccccccccccCCCCcccee------eceeecccc------cee---eee--
Confidence 333 343 68999999873221111 0 0 0000111111 111111110 000 000
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEEec----CCc-EEEEEccCCCce
Q 000992 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLR----RDG-IRFMWHPTKPLQ 334 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~~~----~~~-~~v~Wsp~~~~~ 334 (1196)
-++.| ...|+..|++|+.|.|++.+.++..-+ |-||+..-- +-+-.-.+.-.. ..+ ++..|||.....
T Consensus 155 prRv~--aNaHtyhiNSIS~NsD~Et~lSADdLR----INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~ 228 (433)
T KOG1354|consen 155 PRRVY--ANAHTYHINSISVNSDKETFLSADDLR----INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNV 228 (433)
T ss_pred eeeec--cccceeEeeeeeecCccceEeecccee----eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccE
Confidence 00111 122456799999999999999987665 999997621 111111111100 123 677899999888
Q ss_pred EEEEecCCcEEEEEEEEe-------------------------------eecCCC-eeEEEEcCCEEEEeeccccCCCCC
Q 000992 335 LICWTLDGQITTYNFIWT-------------------------------TAVMEN-STALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 335 L~~~~~~g~~~~~~~~~~-------------------------------~~~~d~-~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
++..+..|++...+..-+ +.+++. .....-|--+|++|++....- |
T Consensus 229 f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~--p 306 (433)
T KOG1354|consen 229 FVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK--P 306 (433)
T ss_pred EEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC--c
Confidence 888888899887665411 002222 344555667899998854332 2
Q ss_pred ceeeeec-----------CCCCE---EEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 383 MYLFSLK-----------FPTAV---TEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 383 m~~~~l~-----------~~~~V---~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
...+++- -.+.| ..++||-++ ..+++|+.++.+++++.+
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc--ceEecccccceEEEecCC
Confidence 2222220 12334 358899888 899999999999999954
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00039 Score=80.84 Aligned_cols=271 Identities=11% Similarity=0.066 Sum_probs=146.5
Q ss_pred CcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeC----------CceEEEEe-ccCceeeeeecccccCcc
Q 000992 97 GLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 97 G~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~----------d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
|+|.+.|.+++++. -+|.... .+ .||||+.|.++.. ++.|.+|+ ....++.++.+...++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh
Confidence 78999999886542 2332122 23 9999999998866 67888886 567777777765442100
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE--------cCCC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW--------MPSG 234 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw--------sPdG 234 (1196)
. -.....++.||||+++. ++..+ .+..|-|.|..+++.+....- .+-..-..+ ++||
T Consensus 103 ~---------~~~~~~~~ls~dgk~l~-V~n~~----p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 103 V---------GTYPWMTSLTPDNKTLL-FYQFS----PSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDG 167 (352)
T ss_pred c---------cCccceEEECCCCCEEE-EecCC----CCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecC
Confidence 0 01235789999999988 66543 358999999989988876552 222222333 4444
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
.++-....+.+......+.+|+.+- .+. .... .+++ ||+.+-+... + +|.+-|..+..--...
T Consensus 168 ~~~~v~~d~~g~~~~~~~~vf~~~~-------~~v-~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 168 SLAKVGYGTKGNPKIKPTEVFHPED-------EYL-INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSSGDAKFLP 231 (352)
T ss_pred ceEEEEecCCCceEEeeeeeecCCc-------ccc-ccCC----ceEcCCCcEEEEecC-C---eEEEEecCCCcceecc
Confidence 4433332221100000011111000 000 0011 3455 8888877777 5 7888885432110011
Q ss_pred EE---EEec-------CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 314 EI---RYLR-------RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 314 ~l---~~~~-------~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
.+ .+.. ....-+++||++.. +.++...+. .|+. ..+...++++|-.+-++
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~-lyV~~~~~~------~~th-k~~~~~V~ViD~~t~kv------------ 291 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDR-IYLLADQRA------KWTH-KTASRFLFVVDAKTGKR------------ 291 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCE-EEEEecCCc------cccc-cCCCCEEEEEECCCCeE------------
Confidence 11 1110 00012445554443 333221110 0111 12234677777655332
Q ss_pred eeeeecCCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAP 425 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~-~lAs~~-~dg~v~lw~~~~~ 425 (1196)
...+.....++.|+||||+ + .|.+.. .+++|.+.|..+.
T Consensus 292 -i~~i~vG~~~~~iavS~Dg--kp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 292 -LRKIELGHEIDSINVSQDA--KPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred -EEEEeCCCceeeEEECCCC--CeEEEEeCCCCCcEEEEECcCC
Confidence 1334456678999999999 7 766665 5789999998764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00013 Score=80.01 Aligned_cols=145 Identities=16% Similarity=0.156 Sum_probs=80.4
Q ss_pred EEECCCCCEEEEEeCCceEEEEe--ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccC
Q 000992 122 ISPSPDGDLLGVTTGFGQILVMT--HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 122 ~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
++-++||++||+... ..|.+=+ .+|..+.+.+--+.+ . ..| =..++|||||.+|| .+.
T Consensus 3 ~~~~~~Gk~lAi~qd-~~iEiRsa~Ddf~si~~kcqVpkD-~----~PQ-------WRkl~WSpD~tlLa-~a~------ 62 (282)
T PF15492_consen 3 LALSSDGKLLAILQD-QCIEIRSAKDDFSSIIGKCQVPKD-P----NPQ-------WRKLAWSPDCTLLA-YAE------ 62 (282)
T ss_pred eeecCCCcEEEEEec-cEEEEEeccCCchheeEEEecCCC-C----Cch-------heEEEECCCCcEEE-EEc------
Confidence 567899999998764 4555532 234444333322222 0 112 26899999999999 664
Q ss_pred CCCEEEEEECCCCcEEEEeccCC-------CceeEEEEcCCC-------CeEEEEecCCCCCCCCeEEEEe------CCC
Q 000992 200 LHKRLKVWERDSGTLQASSELKA-------FMGAVLEWMPSG-------ANIAAVYDRKSENKCPSIVFYE------RNG 259 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~-------~~v~slawsPdG-------~~IAs~s~d~~~~~~~~V~~~e------~nG 259 (1196)
..++|+|+|. .|..+.+..+.. ..+..+.|-+-- .+|+..-+ ..++=|- .+.
T Consensus 63 S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~-------G~L~Sy~vs~gt~q~y 134 (282)
T PF15492_consen 63 STGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYR-------GQLRSYLVSVGTNQGY 134 (282)
T ss_pred CCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecc-------ceeeeEEEEcccCCcc
Confidence 3589999999 777666654422 112333333221 12221110 0111110 111
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.....|.+..+....|.++.|.|..++|.+++...
T Consensus 135 ~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 135 QENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred eeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 11223444333345799999999999999887655
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=5e-06 Score=96.24 Aligned_cols=218 Identities=13% Similarity=0.109 Sum_probs=137.2
Q ss_pred cccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE--EeeeecCcEEEEEECCC--CCEEEEEeCCceE
Q 000992 65 AEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE--VVGRVEGGVRFISPSPD--GDLLGVTTGFGQI 140 (1196)
Q Consensus 65 ~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV 140 (1196)
.+|.+| .+.|++++|..||..|++||.|-.+++||+-..+.. +-.+|...|.++.|=|- .+++++|.+|..|
T Consensus 44 ~eL~GH----~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGH----TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccc----cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 346666 589999999999999999999999999999865442 44457889999999874 5789999999999
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
++.+.+ -..+-. .+++-..+.--|.-|.+.|-.|+=-|+| ..|- +++ +|++||-+|..+-....-.+
T Consensus 120 ~lfdl~--~~~~~~---~d~~~~~~~~~~~cht~rVKria~~p~~Phtfw-sas------EDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 120 KLFDLD--SSKEGG---MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFW-SAS------EDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EEEecc--cccccc---cccCccchhhhhhhhhhhhhheecCCCCCceEE-Eec------CCcceeeecccCCccCCccc
Confidence 886432 111110 0011111111244577888899999999 5666 454 57999999975421111011
Q ss_pred --------cCCCc--eeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC---------CCeeE----------EEEE---
Q 000992 220 --------LKAFM--GAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER---------NGLER----------SSFD--- 266 (1196)
Q Consensus 220 --------~~~~~--v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~---------nGl~~----------~~f~--- 266 (1196)
-+..+ ..++..||... ++|.|+.++ -.++|++ +|.+. .-|.
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdp------farLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDP------FARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCc------hhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 01111 26889999764 788887653 2444441 12110 0000
Q ss_pred eccC-C--C---CcEEEEEEccCCCe-eEEEEccCCcceEEEEEecCCE
Q 000992 267 INEQ-I--D---STVELLKWNCMSDL-LAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 267 l~~~-~--~---~~V~~laWSpDg~~-LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+... . . -.+.-+.|||+|+- |++.+.+ .|.|+++++.+
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE----hVYlfdvn~~~ 306 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE----HVYLFDVNEDK 306 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCe----EEEEEeecCCC
Confidence 0000 0 0 12567899999975 5555544 59999998754
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.7e-06 Score=102.67 Aligned_cols=191 Identities=13% Similarity=0.039 Sum_probs=133.6
Q ss_pred cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-
Q 000992 30 IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA- 108 (1196)
Q Consensus 30 ~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~- 108 (1196)
-+.-.++.++.++.+..|+.+ ....-.++ ..+ ...+-....-+.++++.-++++|+.-|.|++|.+....
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~--~~~~~~~i---~~~----er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSK--NSSVLSKI---QSD----ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred hhcceEEEEEcCceEEEEecc--cCceehhc---CCC----ceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 445566666666667777762 21111111 100 00001234556778888999999999999999986432
Q ss_pred -EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 109 -TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 109 -~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
..+.| |++.|.++.||-||.++|++|.|.++++|..+ +...+.. .--+|..+++.+.+.|. +
T Consensus 168 p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~----s~~~~~~----------~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 168 PIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPID----SREVLGC----------TGFGHSARVWACCFLPN--R 230 (967)
T ss_pred cceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecc----cccccCc----------ccccccceeEEEEeccc--e
Confidence 33666 59999999999999999999999999988532 1111110 01167889999999999 7
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
++ +.+ .|.+.|+|+. +|..+.+.+.|. ..++.++..++--.+.+++.|. .+++|+.+|.
T Consensus 231 i~-t~g------edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds------~lk~~~l~~r 290 (967)
T KOG0974|consen 231 II-TVG------EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS------TLKLWDLNGR 290 (967)
T ss_pred eE-Eec------cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCc------chhhhhhhcc
Confidence 77 454 5799999988 887777766554 4689999988887777877764 6999998764
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.9e-06 Score=94.24 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=111.7
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCceeEEEEcCC--CCeEEEEecCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPS--GANIAAVYDRK 244 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v~slawsPd--G~~IAs~s~d~ 244 (1196)
...||.+-|.++.|+.||.+|| +|| .|-.+-|||.-.-++ +++..+|.+-|.++.|=|- .++|+||..|+
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~-SGS------DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLA-SGS------DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhccccceecceeecCCCCEEe-ecC------CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 3458999999999999999999 676 357888999865544 4566889999999999994 45778887764
Q ss_pred CCCCCCeEEEEeCCCee-----EEEE-Eec--cCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 245 SENKCPSIVFYERNGLE-----RSSF-DIN--EQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~-----~~~f-~l~--~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
.|++|+.+... |+-- +++ .-+..+|..|+=-|+| ...-++++|+ +|+-+|+...|- .++..
T Consensus 118 ------~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG---tirQyDiREph~-c~p~~ 187 (758)
T KOG1310|consen 118 ------LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG---TIRQYDIREPHV-CNPDE 187 (758)
T ss_pred ------eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc---ceeeecccCCcc-CCccc
Confidence 69999976332 2210 111 1234678899999999 7888999999 999999876442 12222
Q ss_pred EEec-------C--CcEEEEEccCCCceEEEEecC
Q 000992 316 RYLR-------R--DGIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 316 ~~~~-------~--~~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
..+. . +-.++.-+|..+..|+++..+
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd 222 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD 222 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCC
Confidence 1111 1 115677889999888887643
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-05 Score=86.18 Aligned_cols=201 Identities=12% Similarity=0.077 Sum_probs=132.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC-----CeEEEeeeecCcEEEEEECCCCCEEEE-EeCC--ceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG-----NATEVVGRVEGGVRFISPSPDGDLLGV-TTGF--GQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~-----~~~e~vg~~~~~I~~~awSPDg~~LA~-~s~d--~tV~l~~~~~ 147 (1196)
..|.+++..- ..|.++-.+|++.+|+... .++.... ...++..+.=+|.-..++. |+.. +.+.+|+..-
T Consensus 106 ~~I~gl~~~d--g~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~ 182 (412)
T KOG3881|consen 106 KSIKGLKLAD--GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ 182 (412)
T ss_pred ccccchhhcC--CEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeeccc
Confidence 4566666553 3566678899999999873 2222222 2367888888887665554 6666 5677775321
Q ss_pred c-ee-eeeeccccc--CccccccCccccCCCCeEEEEEccC--CceEEEeeccccccCCCCEEEEEECCCCc-EEEEecc
Q 000992 148 D-LL-YENPLEELA--EGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSEL 220 (1196)
Q Consensus 148 d-~~-~~~~l~~~~--~~~~Vs~tqf~~~~~~v~~isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~ 220 (1196)
. .+ .......+. -.-+ -.+..|.|-++ .+.||+ .+ .-+.+|+||...|. ....+.-
T Consensus 183 ~~qiw~aKNvpnD~L~LrVP----------vW~tdi~Fl~g~~~~~fat-~T------~~hqvR~YDt~~qRRPV~~fd~ 245 (412)
T KOG3881|consen 183 SKQIWSAKNVPNDRLGLRVP----------VWITDIRFLEGSPNYKFAT-IT------RYHQVRLYDTRHQRRPVAQFDF 245 (412)
T ss_pred ceeeeeccCCCCccccceee----------eeeccceecCCCCCceEEE-Ee------cceeEEEecCcccCcceeEecc
Confidence 1 00 001111111 0011 13467788777 778885 43 34789999986553 4555555
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
....+.+++--|+|++|.++... ..+..||.++..+....+. .-.++|.+|.-.|.+++||+++-|+ .|+
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~------g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDR---yvR 315 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTK------GQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDR---YVR 315 (412)
T ss_pred ccCcceeeeecCCCcEEEEeccc------chhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccce---eEE
Confidence 56678999999999999988653 4688899665444322222 2357899999999999999999999 999
Q ss_pred EEEecC
Q 000992 301 ICFFSN 306 (1196)
Q Consensus 301 lW~~~n 306 (1196)
|+|+++
T Consensus 316 IhD~kt 321 (412)
T KOG3881|consen 316 IHDIKT 321 (412)
T ss_pred Eeeccc
Confidence 999987
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.6e-05 Score=98.08 Aligned_cols=214 Identities=14% Similarity=0.022 Sum_probs=126.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeecccc-ccccccC--------CCCCCEEEEEEccC-CCEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISA-EIEHIDL--------EPGDSITAFDYLME-KEAL 90 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~-~l~~~~~--------~~~~~v~~v~~spd-~~~L 90 (1196)
.+.++++|++++.||++.. .+.|..+|. .++.. .++.. +..+..+ .....+.+|+++|+ +...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~--~~~~V----~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~Ly 698 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDF--VNETV----RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVY 698 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEec--CCCEE----EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEE
Confidence 4688999999999999855 556778887 33332 22110 0000000 00135678999995 5555
Q ss_pred EEEECCCcEEEEECCCCeEEEeeee---------------cCcEEEEEECCCCCEEEEE-eCCceEEEEecc-Cceeeee
Q 000992 91 IVGTSSGLLLLHSVDGNATEVVGRV---------------EGGVRFISPSPDGDLLGVT-TGFGQILVMTHD-WDLLYEN 153 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e~vg~~---------------~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~-~d~~~~~ 153 (1196)
++.+.++.|.+||..++.+..++.. -..-..++|||||+.|.++ +++++|.+|+.. +.. . .
T Consensus 699 Vad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~-~ 776 (1057)
T PLN02919 699 IAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-R-L 776 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-E-E
Confidence 6667788999999988766533210 0124569999999955544 567899888632 211 0 0
Q ss_pred eccccc-----------CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cC
Q 000992 154 PLEELA-----------EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LK 221 (1196)
Q Consensus 154 ~l~~~~-----------~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~ 221 (1196)
...... ....-+..+| ..-..++|++||..++ +.+ .+++|++||..+|.+..... +.
T Consensus 777 ~~gg~~~~~~~l~~fG~~dG~g~~~~l----~~P~Gvavd~dG~LYV-ADs------~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 777 LAGGDPTFSDNLFKFGDHDGVGSEVLL----QHPLGVLCAKDGQIYV-ADS------YNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEecccccCcccccccCCCCchhhhhc----cCCceeeEeCCCcEEE-EEC------CCCEEEEEECCCCeEEEEeccCC
Confidence 000000 0000000011 1125789999999777 343 46899999996665543221 11
Q ss_pred ------------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 222 ------------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 222 ------------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
-.....|+++|+|+++++-+. .+.|++|+.+..
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~------Nn~Irvid~~~~ 890 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTN------NSLIRYLDLNKG 890 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECC------CCEEEEEECCCC
Confidence 013478999999997766544 368999997653
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00056 Score=79.52 Aligned_cols=247 Identities=7% Similarity=-0.013 Sum_probs=136.7
Q ss_pred CEEEEEeCC-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----------CC
Q 000992 33 NRLFFASSA-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----------SG 97 (1196)
Q Consensus 33 ~~l~~~s~~-----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~----------dG 97 (1196)
..+|+.... +.|+.+|. .+.+. +.+++.+ .....+ .||||+.|.++.. ++
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~--~~~~v---~g~i~~G---------~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d 77 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDG--EAGRV---LGMTDGG---------FLPNPV-VASDGSFFAHASTVYSRIARGKRTD 77 (352)
T ss_pred CEEEEECCcccccCceEEEEEC--CCCEE---EEEEEcc---------CCCcee-ECCCCCEEEEEeccccccccCCCCC
Confidence 445555332 56777777 44333 2333333 233344 8999999988866 77
Q ss_pred cEEEEECCCCeEE--E-eee-----ecCcEEEEEECCCCCEEEEEeC--CceEEEEe-ccCceeeeeeccccc------C
Q 000992 98 LLLLHSVDGNATE--V-VGR-----VEGGVRFISPSPDGDLLGVTTG--FGQILVMT-HDWDLLYENPLEELA------E 160 (1196)
Q Consensus 98 ~I~lw~~~~~~~e--~-vg~-----~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~-~~~d~~~~~~l~~~~------~ 160 (1196)
.|.+||..+.+.. + +|. .-..-..+++||||++|.+... ++.|.+.+ ...+.+.++...... +
T Consensus 78 ~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e 157 (352)
T TIGR02658 78 YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN 157 (352)
T ss_pred EEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC
Confidence 8999999986542 1 111 0112347899999999998763 56777765 345556655442211 0
Q ss_pred ccc---c--------c----------cCc-cccCCCCeE-EEE-EccCCceEEEeeccccccCCCCEEEEEEC-----CC
Q 000992 161 GFD---V--------H----------EPE-LSSSFSFKS-PIS-WRGDGKYFATLSEFCNSSKLHKRLKVWER-----DS 211 (1196)
Q Consensus 161 ~~~---V--------s----------~tq-f~~~~~~v~-~is-WspDG~~lAsvss~d~~~~~d~~irVWd~-----~~ 211 (1196)
..+ + + ... |++.++.+. .-. +.+||+++- ++. .++|.+-|. ..
T Consensus 158 ~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~-vs~-------eG~V~~id~~~~~~~~ 229 (352)
T TIGR02658 158 DTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW-PTY-------TGKIFQIDLSSGDAKF 229 (352)
T ss_pred CccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE-Eec-------CCeEEEEecCCCccee
Confidence 000 0 0 000 111111100 002 333887765 554 278888884 12
Q ss_pred CcEEEEec---c----CCCceeEEEEcCCCCeEEEEecCC----CCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEE
Q 000992 212 GTLQASSE---L----KAFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLK 279 (1196)
Q Consensus 212 G~l~~~~e---~----~~~~v~slawsPdG~~IAs~s~d~----~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~la 279 (1196)
.+...+.. . ..+....++++|+|+.+-.....+ +......|.++|.. +.+... ++. ...++.|+
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~--i~v--G~~~~~ia 305 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK--IEL--GHEIDSIN 305 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE--EeC--CCceeeEE
Confidence 22222211 1 122234599999999877643211 11224578888853 333332 221 24689999
Q ss_pred EccCCC-eeEEEEccCCcceEEEEEecCCE
Q 000992 280 WNCMSD-LLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 280 WSpDg~-~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+||||+ .|.+..... +.|.+.|..+.+
T Consensus 306 vS~Dgkp~lyvtn~~s--~~VsViD~~t~k 333 (352)
T TIGR02658 306 VSQDAKPLLYALSTGD--KTLYIFDAETGK 333 (352)
T ss_pred ECCCCCeEEEEeCCCC--CcEEEEECcCCe
Confidence 999999 776665322 269999988764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0001 Score=92.89 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=107.1
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEeccCceeee-eecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~~d~~~~-~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|++.|..+-.+-.|...|..++-|++. .++++||.||+|++|+.. +...+ .... ++..+..-.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~-k~~~~~~s~r--------S~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLR-KLEGEGGSAR--------SELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeeh-hhhcCcceee--------eeEEEeccCCceEEE
Confidence 777776665444566667777666655 999999999999999621 11111 0000 011111223567888
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCC--CcEEEEec------cCCC-ceeEEEEcC-CCC-eEEEEecCCCCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--GTLQASSE------LKAF-MGAVLEWMP-SGA-NIAAVYDRKSENK 248 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~--G~l~~~~e------~~~~-~v~slawsP-dG~-~IAs~s~d~~~~~ 248 (1196)
..-+.|.+|| +|+ .||.|++...+- ++...... ..+| .+..-++.- ++. .++.+...
T Consensus 1105 t~~~~~~~~A-v~t------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~----- 1172 (1431)
T KOG1240|consen 1105 TMCGNGDQFA-VST------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDL----- 1172 (1431)
T ss_pred EeccCCCeEE-EEc------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEec-----
Confidence 8889999999 886 478898887632 22111110 0122 223333322 233 44444442
Q ss_pred CCeEEEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 249 CPSIVFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 249 ~~~V~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..|+.|+.- .+|.-+.+. .+..+.|.+++-+|-+..|++|...| .+-+||+.
T Consensus 1173 -~~iv~~D~r-~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLR 1225 (1431)
T KOG1240|consen 1173 -SRIVSWDTR-MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLR 1225 (1431)
T ss_pred -cceEEecch-hhhhHHhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEee
Confidence 357788742 222222333 12246799999999999999999999 89999986
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.7e-05 Score=85.46 Aligned_cols=148 Identities=16% Similarity=0.235 Sum_probs=104.0
Q ss_pred CCEEEEEEccCCCEEEEEECCC-cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
+.|.-..+.-|++.+++|..|| .+-++|.+|++.+....--+.|.++.-||||+.++.+.... .+|..+-+.-+-..
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~--el~vididngnv~~ 437 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF--ELWVIDIDNGNVRL 437 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCce--EEEEEEecCCCeeE
Confidence 4678888888999999999999 68889999998774433347799999999999998876554 44543222111111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
+.. ...+-+..+.|+|++++|| -+..++ --.+.|+++|..+|+......+. +.-.+-||-|||
T Consensus 438 idk-------------S~~~lItdf~~~~nsr~iA-YafP~g--y~tq~Iklydm~~~Kiy~vTT~t-a~DfsPaFD~d~ 500 (668)
T COG4946 438 IDK-------------SEYGLITDFDWHPNSRWIA-YAFPEG--YYTQSIKLYDMDGGKIYDVTTPT-AYDFSPAFDPDG 500 (668)
T ss_pred ecc-------------cccceeEEEEEcCCceeEE-EecCcc--eeeeeEEEEecCCCeEEEecCCc-ccccCcccCCCC
Confidence 111 1235679999999999999 565321 13467999999666766554432 233678999999
Q ss_pred CeEEEEec
Q 000992 235 ANIAAVYD 242 (1196)
Q Consensus 235 ~~IAs~s~ 242 (1196)
+++---+.
T Consensus 501 ryLYfLs~ 508 (668)
T COG4946 501 RYLYFLSA 508 (668)
T ss_pred cEEEEEec
Confidence 98876654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.6e-05 Score=89.20 Aligned_cols=194 Identities=10% Similarity=0.066 Sum_probs=124.7
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccc
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+|.|+.-..=|.++++..+|.-.|++.|..- -...-.++|+++..+|-..+||.||.+|.|-.|+ +-........
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD----pR~ksrv~~l 213 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD----PRDKSRVGTL 213 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec----chhhhhheee
Confidence 3444333344555566777888888876542 2222247899999999999999999999998875 2221111111
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCC--CC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPS--GA 235 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPd--G~ 235 (1196)
+....|+...+......|++|+|+.||-.+| ||+ ..+.+-|||..+.+.+..-. +..-.+..+.|.+. ++
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~a-VGt------s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVA-VGT------STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEE-eec------cCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 1011122111112223579999999999999 886 45899999986655544332 23345789999887 45
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.++|. | +..+++|+++.-.. +..-. .+..++.+++=|++-++.++..+.
T Consensus 287 ~v~S~--D-----k~~~kiWd~~~Gk~--~asiE-pt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 287 KVVSM--D-----KRILKIWDECTGKP--MASIE-PTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred eEEec--c-----hHHhhhcccccCCc--eeecc-ccCCcCceeeecCCceEEEecCCC
Confidence 56665 3 35799999762211 11112 234599999999999999988776
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.6e-05 Score=91.18 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=104.7
Q ss_pred CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC--c--eEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 97 GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF--G--QILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d--~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+++.+-|.++.....+..-...+..-+|||||+.++..+-. + .+.+++..... .+.. + .|.+
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-~~~i---------~---~~~g- 238 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-RPVI---------L---NFNG- 238 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-ccee---------e---ccCC-
Confidence 34444454433333444334568889999999999988421 1 24443321110 0000 0 1111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.-...+|||||+++|. +... .+...|.+.|...++ ...+....+.-..-+|+|||+.|+.+++..+ ...|
T Consensus 239 --~~~~P~fspDG~~l~f-~~~r---dg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G---~p~I 308 (425)
T COG0823 239 --NNGAPAFSPDGSKLAF-SSSR---DGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGG---RPQI 308 (425)
T ss_pred --ccCCccCCCCCCEEEE-EECC---CCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCC---Ccce
Confidence 2246789999999994 4422 245668888884444 3334444555568899999999999987654 5678
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
-..+.+|......+..... .. .-.|||||+.||..+..
T Consensus 309 ~~~~~~g~~~~riT~~~~~--~~-~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 309 YLYDLEGSQVTRLTFSGGG--NS-NPVWSPDGDKIVFESSS 346 (425)
T ss_pred EEECCCCCceeEeeccCCC--Cc-CccCCCCCCEEEEEecc
Confidence 7888888665444433221 12 67899999999998865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00019 Score=84.97 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=129.0
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEE--Eee--eecCcEEEEEE--------------------CCCCCEEEEEeCCceE
Q 000992 85 MEKEALIVGTSSGLLLLHSVDGNATE--VVG--RVEGGVRFISP--------------------SPDGDLLGVTTGFGQI 140 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~~~~e--~vg--~~~~~I~~~aw--------------------SPDg~~LA~~s~d~tV 140 (1196)
|-+.++|..+.||-+++|+...+++. ... +..+.-.+..| |-|-..||.|+..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 44678899999999999999776542 111 12233344444 3455567888888888
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~ 220 (1196)
.+.+-....++-. +.++ .|++.|..+.|+.+-..|=| ++ +|..+..|+..+++.......
T Consensus 83 ~~ys~~~g~it~~-~st~------------~h~~~v~~~~~~~~~~ciyS-~~------ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 83 LLYSVAGGEITAK-LSTD------------KHYGNVNEILDAQRLGCIYS-VG------ADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred EEEEecCCeEEEE-EecC------------CCCCcceeeecccccCceEe-cC------CceeEEEEecccceeeeeecc
Confidence 7765322222111 1111 57889999999999888883 43 478999999989999998888
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC-----CC-eeEEEEccC
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM-----SD-LLAAVVRFE 294 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD-----g~-~LAs~~~d~ 294 (1196)
....+.++..+|||..++++++ .|++|+.+....-+ +++ +|.+.|..++|--+ |+ +|++...++
T Consensus 143 ~~~~~~sl~is~D~~~l~~as~--------~ik~~~~~~kevv~-~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 143 QKPLVSSLCISPDGKILLTASR--------QIKVLDIETKEVVI-TFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred CCCccceEEEcCCCCEEEeccc--------eEEEEEccCceEEE-Eec-CCCcceEEEEEEEeccccccceeeecccccc
Confidence 8888999999999999999987 59999976432211 222 34568999999877 44 344444444
Q ss_pred CcceEEEEEecC
Q 000992 295 EYDSVKICFFSN 306 (1196)
Q Consensus 295 ~~~~V~lW~~~n 306 (1196)
.+-+|-+.+
T Consensus 213 ---~i~~w~v~~ 221 (541)
T KOG4547|consen 213 ---GITVWVVEK 221 (541)
T ss_pred ---ceeEEEEEc
Confidence 466666554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.2e-05 Score=88.54 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=69.0
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~ 146 (1196)
+..+|+ ...|++.+++|+.+.|++|..||.|++||...+...... ..--...++|.|||..+++++.-|.+.+|+..
T Consensus 253 vtsipL--~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 253 VTSIPL--PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEEec--CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 344444 468999999999999999999999999999876554332 24457889999999999999999999999877
Q ss_pred Cceeeeeec
Q 000992 147 WDLLYENPL 155 (1196)
Q Consensus 147 ~d~~~~~~l 155 (1196)
-.++.-.-+
T Consensus 330 Lspi~~qLl 338 (545)
T PF11768_consen 330 LSPIKMQLL 338 (545)
T ss_pred cCccceeec
Confidence 666654443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0015 Score=71.82 Aligned_cols=195 Identities=12% Similarity=0.021 Sum_probs=104.4
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-------EeeeecCcEEEEEECCCC------CEEEEEeCCceE
Q 000992 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VVGRVEGGVRFISPSPDG------DLLGVTTGFGQI 140 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-------~vg~~~~~I~~~awSPDg------~~LA~~s~d~tV 140 (1196)
|...-.-++||||+..||.+...|+|.++|+.+..+- ..|.....|..+.|-+-- ..|.+.+-.|.+
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3457889999999999999999999999999875432 223334556666664321 112222333333
Q ss_pred EEEeccCceeeeeecccc--c--CccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCE-------EEEEE
Q 000992 141 LVMTHDWDLLYENPLEEL--A--EGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKR-------LKVWE 208 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~--~--~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~-------irVWd 208 (1196)
+ ...+... . ...+ .-+|.. ...+|.++.|.|.-+.|. |++.... .++. +-.|-
T Consensus 122 ~----------Sy~vs~gt~q~y~e~h--sfsf~~~yp~Gi~~~vy~p~h~LLl-VgG~~~~--~~~~s~a~~~GLtaWR 186 (282)
T PF15492_consen 122 R----------SYLVSVGTNQGYQENH--SFSFSSHYPHGINSAVYHPKHRLLL-VGGCEQN--QDGMSKASSCGLTAWR 186 (282)
T ss_pred e----------eEEEEcccCCcceeeE--EEEecccCCCceeEEEEcCCCCEEE-EeccCCC--CCccccccccCceEEE
Confidence 1 1111100 0 0000 001112 246889999999999888 7873211 1111 11222
Q ss_pred CCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeE
Q 000992 209 RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LA 288 (1196)
. +.=+|-.+.+.+...+-+ ....+-.||..-. .+-|.........|..++.||||+.||
T Consensus 187 i------------------L~~~Pyyk~v~~~~~~~~-~~~~~~~~~~~~~--~~~fs~~~~~~d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 187 I------------------LSDSPYYKQVTSSEDDIT-ASSKRRGLLRIPS--FKFFSRQGQEQDGIFKMSLSPDGSLLA 245 (282)
T ss_pred E------------------cCCCCcEEEccccCcccc-ccccccceeeccc--eeeeeccccCCCceEEEEECCCCCEEE
Confidence 1 111344444332221110 0000112222110 001111122346799999999999999
Q ss_pred EEEccCCcceEEEEEecCC
Q 000992 289 AVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~ 307 (1196)
+....| .|-||++.+.
T Consensus 246 ~ih~sG---~lsLW~iPsL 261 (282)
T PF15492_consen 246 CIHFSG---SLSLWEIPSL 261 (282)
T ss_pred EEEcCC---eEEEEecCcc
Confidence 999999 8999999874
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.6e-05 Score=83.91 Aligned_cols=298 Identities=12% Similarity=0.125 Sum_probs=158.4
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC------------CCeEEEEEcc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF------------SFKSPISWRG 183 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~------------~~v~~isWsp 183 (1196)
..-|+++.|-.-|.+||+|...|.|.++.+.-.--. +.++. |.||+|+ ..|..|.|--
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c--------eykf~--teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC--------EYKFF--TEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeeccccccc--------chhhh--hhhcccccchhhhhhccHHHHhhheeeec
Confidence 356999999999999999888899988754311101 12222 2233222 4578899987
Q ss_pred CCc--eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC-C--CCCCeEEEEeCC
Q 000992 184 DGK--YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS-E--NKCPSIVFYERN 258 (1196)
Q Consensus 184 DG~--~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~-~--~~~~~V~~~e~n 258 (1196)
|++ .|. +++ .+++|++|-..+..+.-..+. .+-.++. +|-|--+.|.+.-.- + ...--|....+
T Consensus 96 ~t~r~hFL-lst------NdktiKlWKiyeknlk~va~n--nls~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa~p~- 164 (460)
T COG5170 96 DTGRNHFL-LST------NDKTIKLWKIYEKNLKVVAEN--NLSDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAAKPC- 164 (460)
T ss_pred CCCcceEE-Eec------CCceeeeeeeecccchhhhcc--ccccccc-cccCCCcCCHHHhhcccccccceEEEeccc-
Confidence 775 233 343 579999998855433322221 1111221 232222222211000 0 00001111111
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE-EEEEEEEEEec----CCc-EEEEEccCCC
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH-WYLKYEIRYLR----RDG-IRFMWHPTKP 332 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~-wylkq~l~~~~----~~~-~~v~Wsp~~~ 332 (1196)
| .....|...|++|+++.|-+.+.++..-+ |-||+..-.. .+-.-.+.-+. ..+ ++..|||+..
T Consensus 165 --r----vyaNaH~yhiNSiS~NsD~et~lSaDdLr----INLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c 234 (460)
T COG5170 165 --R----VYANAHPYHINSISFNSDKETLLSADDLR----INLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC 234 (460)
T ss_pred --e----eccccceeEeeeeeecCchheeeecccee----eeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence 0 00022345699999999999999987665 9999976321 11111111111 123 6788999999
Q ss_pred ceEEEEecCCcEEEEEEEEeeecCCCe--eEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000992 333 LQLICWTLDGQITTYNFIWTTAVMENS--TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 333 ~~L~~~~~~g~~~~~~~~~~~~~~d~~--~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA 409 (1196)
..++..+..|.+...+..-+.-+++.. ....+||-.+ .-+ +.-+.|.++-||++| +.++
T Consensus 235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~----------------~ff~eivsSISD~kFs~ng--ryIl 296 (460)
T COG5170 235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDV----------------DFFEEIVSSISDFKFSDNG--RYIL 296 (460)
T ss_pred ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccc----------------hhHHHHhhhhcceEEcCCC--cEEE
Confidence 888888888888765543221111100 0011222111 111 234678899999999 7777
Q ss_pred EEECCCcEEEEeCCCCCccccccCCceeeeeecc------cccCCcE---EEEEEecCCeEEEEEecC
Q 000992 410 AILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS------ETAFGSV---IHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 410 s~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~v---~~l~~~~d~~lla~~~~~ 468 (1196)
+-+. .+|+||++.....+ + +.+.+. +.. .-+.+.+ ..+.||.|+.-+.++++.
T Consensus 297 sRdy-ltvkiwDvnm~k~p--i--kTi~~h-~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~ 358 (460)
T COG5170 297 SRDY-LTVKIWDVNMAKNP--I--KTIPMH-CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYS 358 (460)
T ss_pred Eecc-ceEEEEecccccCC--c--eeechH-HHHHHHHHhhhhccceeeeEEEEecCCcccccccccc
Confidence 6543 59999998642211 0 011111 111 0122322 457899999988888774
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0089 Score=66.52 Aligned_cols=229 Identities=15% Similarity=0.067 Sum_probs=131.9
Q ss_pred EEEEcc-CCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEEC-CCCCEEEEEeCCceEEEEe-ccC--ceeeeee
Q 000992 80 AFDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPS-PDGDLLGVTTGFGQILVMT-HDW--DLLYENP 154 (1196)
Q Consensus 80 ~v~~sp-d~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awS-PDg~~LA~~s~d~tV~l~~-~~~--d~~~~~~ 154 (1196)
++.|.+ ++..+++-...|.|.-|+..++....... .+...+++. |||.+++ +...+..++ + ... ..+....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~~~G~~~~~~~g~l~v-~~~~~~~~~-d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PGPNGMAFDRPDGRLYV-ADSGGIAVV-DPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--SSEEEEEEECTTSEEEE-EETTCEEEE-ETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--CCCceEEEEccCCEEEE-EEcCceEEE-ecCCCcEEEEeecc
Confidence 467888 66666776778999999999987765442 236777777 7755554 455544433 3 111 1111111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCC--CEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLH--KRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d--~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
- . . ........+++.|||.+.++....... ... +.|..++. +|+.....+... ..+.|+|+|
T Consensus 80 ~---~-~---------~~~~~~ND~~vd~~G~ly~t~~~~~~~-~~~~~g~v~~~~~-~~~~~~~~~~~~-~pNGi~~s~ 143 (246)
T PF08450_consen 80 D---G-G---------VPFNRPNDVAVDPDGNLYVTDSGGGGA-SGIDPGSVYRIDP-DGKVTVVADGLG-FPNGIAFSP 143 (246)
T ss_dssp T---T-C---------SCTEEEEEEEE-TTS-EEEEEECCBCT-TCGGSEEEEEEET-TSEEEEEEEEES-SEEEEEEET
T ss_pred C---C-C---------cccCCCceEEEcCCCCEEEEecCCCcc-ccccccceEEECC-CCeEEEEecCcc-cccceEECC
Confidence 0 0 0 011245789999999988743321111 111 56777888 477666555433 348999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC--Ce-eE-EEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN--GL-ER-SSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n--Gl-~~-~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
||+.+..+... ...|.-|+.+ +. .. .......+. .+..-.+++.++|.+.++....+ .|+.++....
T Consensus 144 dg~~lyv~ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~---~I~~~~p~G~ 215 (246)
T PF08450_consen 144 DGKTLYVADSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG---RIVVFDPDGK 215 (246)
T ss_dssp TSSEEEEEETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT---EEEEEETTSC
T ss_pred cchheeecccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC---EEEEECCCcc
Confidence 99977665443 3467666643 32 11 111122121 12477899999999888766555 7988887742
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
+...+..+....+.+.|......+|.+.+
T Consensus 216 ---~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 ---LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ---EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ---EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 34566665334488888544444566544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0023 Score=71.42 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=156.2
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.+...-+-.+.|+.+|+|..+..|--- ..++- |.. +. + .. ...+.++.|.++...|.++..+|++.-+
T Consensus 27 vn~~~l~~~e~gv~~~s~drtvrv~lkr-ds~q~-wps------I~-~-~m-P~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 27 VNAAILIPKEEGVISVSEDRTVRVWLKR-DSGQY-WPS------IY-H-YM-PSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhheeccCCCCeEEccccceeeeEEec-ccccc-Cch------hh-h-hC-CCCceEeeeeccceEEEEEEecceEEEE
Confidence 3444444667788999998877666320 11111 110 11 1 11 3578999999999999999999999988
Q ss_pred ECCC--C---eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 103 SVDG--N---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 103 ~~~~--~---~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.... . .+...-.|.+.|.++-||---+++.+.+.|..+.-.. +...-+....
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~---------------------- 153 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN---------------------- 153 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE----------------------
Confidence 7643 1 2234456788999999999999999999998774332 2222221111
Q ss_pred EEEEEccCCceEE---EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 177 SPISWRGDGKYFA---TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 177 ~~isWspDG~~lA---svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
-++|--+-++.+ .++-.. ..-...|+... .-.+..+..+|.+.+.+++|-|-..++-|+..| ..|.
T Consensus 154 -~~~~~t~~~~d~~~~fvGd~~---gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d------~~vi 222 (404)
T KOG1409|consen 154 -FETPASALQFDALYAFVGDHS---GQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD------HSVI 222 (404)
T ss_pred -eeccCCCCceeeEEEEecccc---cceEEEEEeec-CCceEEEEcCcccceEEEEEcCCCcEEEecccc------CceE
Confidence 112222222222 122111 01123455555 667888899999999999999999999999875 5688
Q ss_pred EEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 254 FYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 254 ~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.|+.-|.+-....+.++ ...|..+..-+--+.|.++..|+ .|-+|++++
T Consensus 223 ~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~ 271 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDG---GIVVWNMNV 271 (404)
T ss_pred EEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCC---eEEEEeccc
Confidence 99986654333444433 35688888888889999999999 899999986
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0085 Score=67.78 Aligned_cols=220 Identities=11% Similarity=0.008 Sum_probs=123.6
Q ss_pred eEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc--eeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 176 KSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM--GAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 176 v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~--v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.-.++.+| ++..+| ++- .| -.-.-+||..+|+......+.++. ...-.|||||+++.++..+. ......|
T Consensus 7 gH~~a~~p~~~~ava-faR-RP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~-~~g~G~I 79 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVA-FAR-RP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDY-ETGRGVI 79 (305)
T ss_pred ccceeeCCCCCeEEE-EEe-CC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEecccc-CCCcEEE
Confidence 34688889 455555 553 22 256788999899988877654443 35678999999999887654 2346788
Q ss_pred EEEeCC-Ce-eEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcc---------------eEEEEEecCCEEEEEE
Q 000992 253 VFYERN-GL-ERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYD---------------SVKICFFSNNHWYLKY 313 (1196)
Q Consensus 253 ~~~e~n-Gl-~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~---------------~V~lW~~~n~~wylkq 313 (1196)
.+|+.. +. +.+||... +|| +|.|.|||+.|+++-..-..+ .+-+-|..+..-.-+.
T Consensus 80 gVyd~~~~~~ri~E~~s~GIGPH-----el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 80 GVYDAARGYRRIGEFPSHGIGPH-----ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred EEEECcCCcEEEeEecCCCcChh-----hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 899976 44 45666544 333 689999999998875322100 2222222222211111
Q ss_pred EE--EEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC-CeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 314 EI--RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME-NSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 314 ~l--~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d-~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
++ ..++.+...++|++++. +. ....|.-.+.+ .-+++..+.... +..+ ..|++. ...+
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G~-----------V~-~a~Q~qg~~~~~~PLva~~~~g~~-~~~~---~~p~~~---~~~l 215 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDGT-----------VA-FAMQYQGDPGDAPPLVALHRRGGA-LRLL---PAPEEQ---WRRL 215 (305)
T ss_pred ecCccccccceeeEEecCCCc-----------EE-EEEecCCCCCccCCeEEEEcCCCc-ceec---cCChHH---HHhh
Confidence 11 11111224455555442 21 11223322211 234555554442 1122 112221 1235
Q ss_pred CCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCCCcc
Q 000992 391 PTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPAPDML 428 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~~~~~ 428 (1196)
...|-+|+|++++ ..+|+.+- -|.+.+|+..+....
T Consensus 216 ~~Y~gSIa~~~~g--~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 216 NGYIGSIAADRDG--RLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred CCceEEEEEeCCC--CEEEEECCCCCEEEEEECCCCCEe
Confidence 6789999999999 77766554 579999998865433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00024 Score=77.73 Aligned_cols=216 Identities=18% Similarity=0.198 Sum_probs=134.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EE-----Eeee------------ecCcEEEEEECCCCCE--EEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TE-----VVGR------------VEGGVRFISPSPDGDL--LGVT 134 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e-----~vg~------------~~~~I~~~awSPDg~~--LA~~ 134 (1196)
.+.|++|.|-..|.+|++|-..|.|.++..+... +| ...+ +...|.++.|--|+.+ ....
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4689999999999999999999999999875311 11 1111 2356999999888764 5667
Q ss_pred eCCceEEEEe---ccCceeeeeeccccc---Cccccc------cCccc----------------cCCCCeEEEEEccCCc
Q 000992 135 TGFGQILVMT---HDWDLLYENPLEELA---EGFDVH------EPELS----------------SSFSFKSPISWRGDGK 186 (1196)
Q Consensus 135 s~d~tV~l~~---~~~d~~~~~~l~~~~---~~~~Vs------~tqf~----------------~~~~~v~~isWspDG~ 186 (1196)
+.|+||++|. +.-.++.+-.+...- .+++++ +.+.. .|.-.+.+|++..|-+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999994 333333333222111 122332 11111 4666788999999999
Q ss_pred eEEEeeccccccCCCCEEEEEECC--CCcEE-EEeccCC-----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERD--SGTLQ-ASSELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~--~G~l~-~~~e~~~-----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
++. ++ .+=.|.+|+.+ +|..- --..|+. ..+.+--|+|.-..+-.-|.. ++.|++.+..
T Consensus 186 t~l-Sa-------DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS-----kG~Ikl~DlR 252 (460)
T COG5170 186 TLL-SA-------DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS-----KGEIKLNDLR 252 (460)
T ss_pred eee-ec-------cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC-----CCcEEehhhh
Confidence 998 34 25689999984 22211 1123332 235788899986544333222 3568777631
Q ss_pred --Ce---eEEEEEeccC---------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 259 --GL---ERSSFDINEQ---------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 259 --Gl---~~~~f~l~~~---------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
.+ ....|.+... ...+|..+.|||+|+++++.... +|+|||+++-
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl----tvkiwDvnm~ 311 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL----TVKIWDVNMA 311 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc----eEEEEecccc
Confidence 00 1111211110 12458889999999999987665 6999999864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.017 Score=76.68 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=98.8
Q ss_pred hhCHHHHHHHHHHcCC-------CcHHHHHHHHHHHhcChHHHHhhc---C----CcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 944 LQRFENALKHIVSMGD-------SYHADCLNLMKKYAQLFPLGLKLI---T----DPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~-------~~~~~ale~~~~~~~ly~~AL~L~---~----d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.|++++|.+.|.++.+ ..+...+..+.+. +.+++|+++| . .|. ...+....+-+...+++++|
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~-G~~deAl~lf~eM~~~Gv~PD--~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK-GDWDFALSIYDDMKKKGVKPD--EVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHH
Confidence 4677888877776532 1245667777777 8888888877 1 222 12334444556667788888
Q ss_pred HHHHHhCCC---------HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1010 ATTYFCCSS---------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1010 a~~y~~ag~---------~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
..+|....+ |.-.+.+|.++|++++|+.+-..+ +..++ ...+..+...+.+.|++++|.+++.++.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd--vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777766432 355667788888888877665543 22222 2356677777778888888888877643
Q ss_pred CC--------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 GD--------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 ~d--------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.. +...+..|++.+++++|..+-..
T Consensus 747 ~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 747 RLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 21 55667778888888888766443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00024 Score=82.05 Aligned_cols=288 Identities=12% Similarity=-0.015 Sum_probs=164.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEeccCcee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
.+.|..|.|...|..|+++|.|-.|.+||...+.. ...++|...|....|=| +-..|++.+.||+|++-... .
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~---~ 218 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL---E 218 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeec---c
Confidence 47899999999999999999999999999876543 34455677787777755 34789999999999763211 0
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE---EeccCCC---c
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA---SSELKAF---M 224 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~---~~e~~~~---~ 224 (1196)
++..-.+ + ..-.|.+.+..++--|+..+-. .+. ++|+.++=.|+.++..-. +-+.... .
T Consensus 219 t~~~e~t----~-----rl~~h~g~vhklav~p~sp~~f-~S~-----geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 219 TGYVENT----K-----RLAPHEGPVHKLAVEPDSPKPF-LSC-----GEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred ccceecc----e-----ecccccCccceeeecCCCCCcc-ccc-----ccccceeeeeeccCCccceeeeeccCCcccee
Confidence 1111000 0 0113556677888878776533 222 257788877775553322 2222222 2
Q ss_pred eeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC--------CCeeEEEEEec---cCCCCcEEEEEEccC-CCeeEEEE
Q 000992 225 GAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER--------NGLERSSFDIN---EQIDSTVELLKWNCM-SDLLAAVV 291 (1196)
Q Consensus 225 v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~--------nGl~~~~f~l~---~~~~~~V~~laWSpD-g~~LAs~~ 291 (1196)
..+|+-.|... .+|+++.+. -+++++. ||.. ..|.-+ ......|..+++|.+ |++||+..
T Consensus 284 L~~Ia~~P~nt~~faVgG~dq------f~RvYD~R~~~~e~~n~~~-~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQ------FARVYDQRRIDKEENNGVL-DKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred eeeEecCCCCccccccCChhh------hhhhhcccchhhccccchh-hhcCCccccccCcccceeEEecCCccceeeeec
Confidence 37899999775 788887753 3445542 3311 123211 112346999999955 55666665
Q ss_pred ccCCcceEEEEEecCCE------------EEEEEEEEEecCCcE--EE-EEccCCCceEEEEecCCcEEEEEEEEeeecC
Q 000992 292 RFEEYDSVKICFFSNNH------------WYLKYEIRYLRRDGI--RF-MWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~------------wylkq~l~~~~~~~~--~v-~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1196)
... |.|++- ++. -|.|+.+..|.+..+ .+ .|-|.
T Consensus 357 De~----IYLF~~-~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr-------------------------- 405 (559)
T KOG1334|consen 357 DED----IYLFNK-SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR-------------------------- 405 (559)
T ss_pred ccc----eEEecc-ccccCCCCCCCcchhhccchhhcccccccccceeeeccCc--------------------------
Confidence 554 888843 221 122332222222110 01 12222
Q ss_pred CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
..-++...|-.+|.+|.-+.+.+-.-|-. -..-|+|+-=+|-- ..||+.+-|..|+||...+
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~Meg----Dr~VVNCLEpHP~~--PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEG----DRHVVNCLEPHPHL--PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhc----ccceEeccCCCCCC--chhhccCCccceeeecCCc
Confidence 22233334444555555443322111110 11246777756655 6899999999999998744
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0024 Score=69.17 Aligned_cols=227 Identities=11% Similarity=-0.001 Sum_probs=129.9
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV 112 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~v 112 (1196)
++|+.+...++.-.|.. .++++..++.+.. ..+..+ +.-.+-+ .--+-+++.|.|+++...+.+.....
T Consensus 85 ~~la~gG~~g~fd~~~~--~tn~~h~~~cd~s--nn~v~~-----~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFAC--NTNDGHLYQCDVS--NNDVTL-----VKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cEEEeccccceeeeecc--cCcccceeeeccc--ccchhh-----hhhhccc--ccceeeccCCcceeEEEEecCcccce
Confidence 45555556667777887 5565544432111 111101 0001001 12345678888888888776543322
Q ss_pred eeec-CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 113 GRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 113 g~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
-+.. -.+..++.|||++++++++....|-.+..+-+. +..... ...+..+.-.+.+||.....|| +
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s--ey~~~~----------~~a~t~D~gF~~S~s~~~~~FA-v 220 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES--EYIENI----------YEAPTSDHGFYNSFSENDLQFA-V 220 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc--ceeeee----------EecccCCCceeeeeccCcceEE-E
Confidence 2222 348899999999999999998888776533221 111110 0002234557899999999999 7
Q ss_pred eccccccCCCCEEEEEECCC-CcEEE----EeccCCCceeEEEEcCCCCe-EEEEecCCCCCCCCeEEEEe-CCCeeEEE
Q 000992 192 SEFCNSSKLHKRLKVWERDS-GTLQA----SSELKAFMGAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYE-RNGLERSS 264 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~-G~l~~----~~e~~~~~v~slawsPdG~~-IAs~s~d~~~~~~~~V~~~e-~nGl~~~~ 264 (1196)
++ .|+++.|||... +.+.. +-..|.|.+..+.|+|-|-+ |..-+.. -..+.+.+ ||+..+..
T Consensus 221 ~~------Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-----fs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 221 VF------QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-----FSRVHVVDTRNYVNHQV 289 (344)
T ss_pred Ee------cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-----cceEEEEEcccCceeeE
Confidence 76 579999999753 32222 12347889999999997752 1222221 12355555 67766654
Q ss_pred EEec-----cCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 265 FDIN-----EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 265 f~l~-----~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..++ .|.+..|..-.|+.+++-.-+..++.
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccchh
Confidence 3332 12223466666777766666555554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=79.97 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=98.3
Q ss_pred eeecCCCEEEEEeCCCcE--EEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE---
Q 000992 27 ALDIEQNRLFFASSANNI--YSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL--- 101 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l--- 101 (1196)
.....+..|+++..+.+. +.+.- ..+ . ++.- + .... .-...++.|..+.....++-..|++..
T Consensus 69 ~~s~~~~llAv~~~~K~~~~f~~~~--~~~-~-~kl~--~--~~~v----~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQRAVFDYRE--NPK-G-AKLL--D--VSCV----PKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccCCCceEEEEEeCCCceEEEEEec--CCC-c-ceee--e--Eeec----ccCcceeeeeeccceEEEEeecCCceeeee
Confidence 344556777777666664 44444 222 1 1210 0 0111 124556666666666666666666555
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+...+..+ ++|| -.-++.++||||++.|.++..|+.|++- |-|-. ++-++-+.||..-|.+++
T Consensus 137 ~s~~~~~~~~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs---~ypa~-----------f~IesfclGH~eFVS~is 201 (390)
T KOG3914|consen 137 LSADSGRCEPILGH-VSMLLDVAVSPDDQFIITADRDEKIRVS---RYPAT-----------FVIESFCLGHKEFVSTIS 201 (390)
T ss_pred ecccccCcchhhhh-hhhhheeeecCCCCEEEEecCCceEEEE---ecCcc-----------cchhhhccccHhheeeee
Confidence 555535544 7886 5779999999999999999999999763 21110 000112225666778888
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
--+ ++.|. +|+ +|+++|+||..+|+++.+++
T Consensus 202 l~~-~~~Ll-S~s------GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 202 LTD-NYLLL-SGS------GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ecc-Cceee-ecC------CCCcEEEEecccCCcccccc
Confidence 764 55677 454 68999999999999887664
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.5e-05 Score=86.09 Aligned_cols=187 Identities=16% Similarity=0.217 Sum_probs=131.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|..+.|+|--=.|++++..|-++--|+.+|++- ..-.-.+.+..++=+|=.-.+-+|-..|+|.+|+. ....+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP----~skeP 285 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP----NSKEP 285 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC----CCcch
Confidence 57888999999889999999999998999887652 11111467889999999999999999999998763 23223
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEcCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slawsPd 233 (1196)
+... .-|.+.|.+|+..++|+|.|| ++ -|+.++|||...= +++....++ ....+++|.-
T Consensus 286 LvKi-----------LcH~g~V~siAv~~~G~YMaT-tG------~Dr~~kIWDlR~~~ql~t~~tp~--~a~~ls~Sqk 345 (545)
T KOG1272|consen 286 LVKI-----------LCHRGPVSSIAVDRGGRYMAT-TG------LDRKVKIWDLRNFYQLHTYRTPH--PASNLSLSQK 345 (545)
T ss_pred HHHH-----------HhcCCCcceEEECCCCcEEee-cc------cccceeEeeeccccccceeecCC--Cccccccccc
Confidence 2211 135567799999999999994 54 4799999998532 444444433 3478999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYER--NGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
|.+.++-+. -|.+|-- +|..++++..-.+ -.+.|.+|.|-|--++|-+|-..+
T Consensus 346 glLA~~~G~--------~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 346 GLLALSYGD--------HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cceeeecCC--------eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 876555443 4788852 2212332211111 134799999999999998887665
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=73.73 Aligned_cols=186 Identities=11% Similarity=0.069 Sum_probs=129.1
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECC--CcEEEEECCCCe
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSS--GLLLLHSVDGNA 108 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~d--G~I~lw~~~~~~ 108 (1196)
.+.|..|-+++.+..|+. -.+..... .+... ..++.+..|.=.|....++. |+.- ..+++||+++.+
T Consensus 115 dg~Litc~~sG~l~~~~~--k~~d~hss------~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~ 184 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHD--KSGDLHSS------KLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK 184 (412)
T ss_pred CCEEEEEecCCcEEEEec--cCCccccc------cceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccce
Confidence 355666666777888887 32221000 01111 11356777777777665554 6666 678999998752
Q ss_pred EEEe----------e-eecCcEEEEEECCC--CCEEEEEeCCceEEEEec--cCceeeeeecccccCccccccCccccCC
Q 000992 109 TEVV----------G-RVEGGVRFISPSPD--GDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 109 ~e~v----------g-~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~--~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.+. | .+.-+++++.|=|+ ...+|++|.-+.|++++. .-.|+.++.+ ..
T Consensus 185 -qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~----------------~E 247 (412)
T KOG3881|consen 185 -QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF----------------LE 247 (412)
T ss_pred -eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc----------------cc
Confidence 211 1 13456788999888 899999999999988641 1233333322 23
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
..+.+++--|+|.++. ++. ..+.+..+|...|.+... +.+..|.+.+|.-.|.+.+||+++-|. -|
T Consensus 248 ~~is~~~l~p~gn~Iy-~gn------~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR------yv 314 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIY-TGN------TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR------YV 314 (412)
T ss_pred CcceeeeecCCCcEEE-Eec------ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce------eE
Confidence 4678999999999988 553 347899999989998887 788999999999999999999999874 58
Q ss_pred EEEeC
Q 000992 253 VFYER 257 (1196)
Q Consensus 253 ~~~e~ 257 (1196)
++|+.
T Consensus 315 RIhD~ 319 (412)
T KOG3881|consen 315 RIHDI 319 (412)
T ss_pred EEeec
Confidence 88984
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=80.99 Aligned_cols=253 Identities=12% Similarity=0.114 Sum_probs=154.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
-+..+-|.-.|+.+.++|+|.+++.||- ...... ...++ +| ...|---.|.| +.+.|++.++||.|
T Consensus 144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW--~~~~~~---l~f~S---GH----~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 144 CVNTVHFNQRGDVLASGSDDLQVVVWDW--VSGSPK---LSFES---GH----CNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred ccceeeecccCceeeccCccceEEeehh--hccCcc---ccccc---cc----ccchhhhhccCCCCCcCceeccccCce
Confidence 5667789999999999999999999997 333321 11111 12 12233334555 34788999999999
Q ss_pred EEEECC-CCeE---EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCceeeee-----------------eccc
Q 000992 100 LLHSVD-GNAT---EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDLLYEN-----------------PLEE 157 (1196)
Q Consensus 100 ~lw~~~-~~~~---e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~~~~~-----------------~l~~ 157 (1196)
++=.+. ++.+ ..++.|.+.|.-++--|+.- -+.++++|+.|.-.+..-+.-++. ..++
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 985543 3444 36788999999999888854 577788898876433111111110 0000
Q ss_pred cc-Cccccc-cCccc---------------------c------CCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEE
Q 000992 158 LA-EGFDVH-EPELS---------------------S------SFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVW 207 (1196)
Q Consensus 158 ~~-~~~~Vs-~tqf~---------------------~------~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVW 207 (1196)
.. ..-.|. ..||. + ....|+++++|.|| ..|| +. .|-.|.++
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SY------nDe~IYLF 363 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SY------NDEDIYLF 363 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--ee------cccceEEe
Confidence 00 000010 11222 1 23468999999555 5666 43 24678888
Q ss_pred ECC--CC----------cEEEE-eccCCCc--eeEE-EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC
Q 000992 208 ERD--SG----------TLQAS-SELKAFM--GAVL-EWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271 (1196)
Q Consensus 208 d~~--~G----------~l~~~-~e~~~~~--v~sl-awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~ 271 (1196)
+.. .| ..... ..+|... |..+ =|-|..+++.|||+ .+.|-||++++-.+-.| +.+.
T Consensus 364 ~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD------CGhIFiW~K~t~eii~~-MegD- 435 (559)
T KOG1334|consen 364 NKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD------CGHIFIWDKKTGEIIRF-MEGD- 435 (559)
T ss_pred ccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc------cceEEEEecchhHHHHH-hhcc-
Confidence 653 34 11111 2344332 2233 27899999999998 45699999876433211 1121
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..-|+.|.=.|-=-+||+.+-|. -||||+-.
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~---DVKIWTP~ 466 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDH---DVKIWTPL 466 (559)
T ss_pred cceEeccCCCCCCchhhccCCcc---ceeeecCC
Confidence 23688898888889999999888 79999974
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0028 Score=74.66 Aligned_cols=245 Identities=13% Similarity=0.127 Sum_probs=127.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEee--e-------e---------cCcEEEEEECCCCCEEEEEeCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG--R-------V---------EGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg--~-------~---------~~~I~~~awSPDg~~LA~~s~d 137 (1196)
..+....|||||+.+|.+. +++|.+++..++....+. . . -+.-.++-|||||+.||...-|
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 4688899999999999886 689999998765432111 1 0 0112467799999999999654
Q ss_pred c-eEEEEecc-C--c----e-eeeeeccccc-Cc-cccc-------cC---------ccccCCCCeEEEEEccCCceEEE
Q 000992 138 G-QILVMTHD-W--D----L-LYENPLEELA-EG-FDVH-------EP---------ELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 138 ~-tV~l~~~~-~--d----~-~~~~~l~~~~-~~-~~Vs-------~t---------qf~~~~~~v~~isWspDG~~lAs 190 (1196)
. .|..+... + . | ...+.- +.. .. ..|. .. .+...+.-+..+.|++|++.|+
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~Y-Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~- 199 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRY-PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW- 199 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE---BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE-
T ss_pred CcCCceEEeeccCCccccCCccccccc-CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE-
Confidence 3 33332210 0 0 0 111110 000 00 0000 00 0113456688999999999555
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEe-ccCCCce---eEEEEc-CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMG---AVLEWM-PSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v---~slaws-PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
+...+-. -....+.+.|..+|...... +..++++ ....|. |+|..+.-.+...+ -..|-+++.+|.....
T Consensus 200 ~~~~nR~-q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G---~~hly~~~~~~~~~~~- 274 (353)
T PF00930_consen 200 VQWLNRD-QNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG---YRHLYLYDLDGGKPRQ- 274 (353)
T ss_dssp EEEEETT-STEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS---SEEEEEEETTSSEEEE-
T ss_pred EEEcccC-CCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC---CcEEEEEcccccceec-
Confidence 3332211 12345667788777665443 3344444 466665 88887766655321 4567777877654332
Q ss_pred EeccCCCCcEE-EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe-cCCc--EEEEEccCCCc
Q 000992 266 DINEQIDSTVE-LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL-RRDG--IRFMWHPTKPL 333 (1196)
Q Consensus 266 ~l~~~~~~~V~-~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~-~~~~--~~v~Wsp~~~~ 333 (1196)
|. .+.-.|. -+.|+++++.|...+....-..-+||.++-.. ..++..- .... ..+.+||++..
T Consensus 275 -lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~---~~~~~~LT~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 275 -LT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS---GGEPKCLTCEDGDHYSASFSPDGKY 341 (353)
T ss_dssp -SS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE---TTEEEESSTTSSTTEEEEE-TTSSE
T ss_pred -cc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC---CCCeEeccCCCCCceEEEECCCCCE
Confidence 22 2334564 48899998877765554211124455543210 0111111 1112 46778887765
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0034 Score=80.83 Aligned_cols=158 Identities=11% Similarity=-0.014 Sum_probs=122.0
Q ss_pred ccHHHH--hhCHHHHHHHHHHcCCC---cHHHHHHHHHHHhcChHHHHhhc-C--------CcHHHHHHHHHHHHHHhcc
Q 000992 938 YTIDLR--LQRFENALKHIVSMGDS---YHADCLNLMKKYAQLFPLGLKLI-T--------DPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 938 ~~Id~~--L~ry~~Al~~l~~~g~~---~~~~ale~~~~~~~ly~~AL~L~-~--------d~~~~~~i~~~~A~~L~~~ 1003 (1196)
..|++| .|++++|.+.|.++.+. -+...+..+.++ +.+++|++++ . |...+..++ .-+...
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll----~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNHVTFLAVL----SACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHHhcC
Confidence 466766 57899999999987531 257778888999 9999999998 1 222344444 556678
Q ss_pred cCHHHHHHHHHhCC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1004 KCFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag----------~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
+..++|..+|.... -|.--+++|.++|++++|+.+..+.+..++. .....+...+...|+++.|..++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--~~~~~Ll~a~~~~g~~~~a~~~~ 517 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV--NMWAALLTACRIHKNLELGRLAA 517 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCcHHHHHHH
Confidence 99999999998763 2556789999999999999998887655443 35777888888899999998887
Q ss_pred HHh-------cCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1074 LDY-------CGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~y-------l~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+- .+.+...+.+|++.++|++|.++-..
T Consensus 518 ~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 763 24677889999999999999988654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.037 Score=67.66 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=82.2
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC-CeEEEeeeecCcEEEEEECCCC------------CEEEEEeCCceEEEE
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEVVGRVEGGVRFISPSPDG------------DLLGVTTGFGQILVM 143 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~e~vg~~~~~I~~~awSPDg------------~~LA~~s~d~tV~l~ 143 (1196)
.-.++.|+|.| .+|.|+.+ -|.+.|..+ +.+..+..|...|+.+.|+|-- =+||++.-.|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35678899987 56666543 466777766 4566788889999999998731 257777778899887
Q ss_pred ec-cCceeeeeecccccCccccccCccccCCCCeEEEEE---ccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 144 TH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW---RGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 144 ~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW---spDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
+- ..-.+.. |+.+.+.+..+.| ++|.+. |+.+. +..++-+||.++|++....
T Consensus 95 d~~~~s~~~~----------------l~~~~~~~qdl~W~~~rd~Srd~LlaIh-------~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 95 DFVLASVINW----------------LSHSNDSVQDLCWVPARDDSRDVLLAIH-------GSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred Eehhhhhhhh----------------hcCCCcchhheeeeeccCcchheeEEec-------CCcEEEEEEccCCceeecc
Confidence 52 1111111 1123344455554 677844 44232 3479999999999988765
Q ss_pred ccCCCceeEEEEcC
Q 000992 219 ELKAFMGAVLEWMP 232 (1196)
Q Consensus 219 e~~~~~v~slawsP 232 (1196)
...+....++.+-|
T Consensus 152 ~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDP 165 (1062)
T ss_pred ccCCcceeeeeeCC
Confidence 43333334455544
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00026 Score=82.01 Aligned_cols=167 Identities=13% Similarity=0.122 Sum_probs=114.7
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec--cCceeeeeecccccCccccccCcc--ccCCCCeEEEEEccCCc
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH--DWDLLYENPLEELAEGFDVHEPEL--SSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~--~~d~~~~~~l~~~~~~~~Vs~tqf--~~~~~~v~~isWspDG~ 186 (1196)
.+| |...|.+++==.+.+..++++.|+||++|+. .+|.+.. +.-|| +.|...+.+|.|-.|-+
T Consensus 731 f~G-H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t------------saCQfTY~aHkk~i~~igfL~~lr 797 (1034)
T KOG4190|consen 731 FTG-HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT------------SACQFTYQAHKKPIHDIGFLADLR 797 (1034)
T ss_pred ccC-cHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc------------ceeeeEhhhccCcccceeeeeccc
Confidence 455 5777887766667788999999999999973 2222211 11222 26677789999999999
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEec--cCCCceeEEEEcCC-CC--eEEEEecCCCCCCCCeEEEEe-CCCe
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMGAVLEWMPS-GA--NIAAVYDRKSENKCPSIVFYE-RNGL 260 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~~~~v~slawsPd-G~--~IAs~s~d~~~~~~~~V~~~e-~nGl 260 (1196)
++|+ . |+.|.+||+--|.+++..+ +..+.+..+.--|+ .+ +||.++.. .+|++|+ |.+.
T Consensus 798 ~i~S-c--------D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae------STVKl~DaRsce 862 (1034)
T KOG4190|consen 798 SIAS-C--------DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE------STVKLFDARSCE 862 (1034)
T ss_pred eeee-c--------cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch------hhheeeeccccc
Confidence 9983 2 5789999998888877443 34444455555555 22 45555553 5799998 4444
Q ss_pred eEEEEEec-cCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 261 ERSSFDIN-EQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 261 ~~~~f~l~-~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
-.-++..- .+. .+.+..++--|.|..||.+.+.+ +|-+.|..|+.
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG---ci~~LDaR~G~ 909 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG---CIAILDARNGK 909 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC---cEEEEecCCCc
Confidence 44444332 222 35689999999999999999999 89888888753
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.01 Score=71.65 Aligned_cols=140 Identities=12% Similarity=0.092 Sum_probs=83.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecc
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~ 156 (1196)
.+.+++|+|.|+.+++ ..+|...|+.....+-...|. =..++|+++++ .|+....++|.+. ++++......+.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~----g~~~vw~~~n~-yAv~~~~~~I~I~-kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGS----GLSFVWSSRNR-YAVLESSSTIKIY-KNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-----SEEEE-TSSE-EEEE-TTS-EEEE-ETTEE-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCc----eeEEEEecCcc-EEEEECCCeEEEE-EcCccccceEEc
Confidence 5889999999999998 568999999966544444453 25678999655 6777778888886 444432211111
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
.. ..+-.|-- |..|. +.+ ++.|.+||.++|+++...+- .+ +..+.|||+|++
T Consensus 107 ~~---------------~~~~~If~---G~LL~-~~~-------~~~i~~yDw~~~~~i~~i~v-~~-vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 107 LP---------------FSVEKIFG---GNLLG-VKS-------SDFICFYDWETGKLIRRIDV-SA-VKYVIWSDDGEL 158 (443)
T ss_dssp -S---------------S-EEEEE----SSSEE-EEE-------TTEEEEE-TTT--EEEEESS--E--EEEEE-TTSSE
T ss_pred CC---------------cccceEEc---CcEEE-EEC-------CCCEEEEEhhHcceeeEEec-CC-CcEEEEECCCCE
Confidence 11 01222322 99888 654 35799999989999988763 22 789999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC
Q 000992 237 IAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+|-.+.+ .+.+++.|
T Consensus 159 val~t~~-------~i~il~~~ 173 (443)
T PF04053_consen 159 VALVTKD-------SIYILKYN 173 (443)
T ss_dssp EEEE-S--------SEEEEEE-
T ss_pred EEEEeCC-------eEEEEEec
Confidence 9999864 47676654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00075 Score=76.76 Aligned_cols=158 Identities=15% Similarity=0.046 Sum_probs=96.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEecc-----CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHD-----WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-----~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
..+..+..||+|++||.++.++...+..-. +..+...++.. .-..|++--+..+.. +
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-----------------~~~ai~~~~~~~sv~-v 124 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-----------------RPTAISFIREDTSVL-V 124 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-----------------CcceeeeeeccceEE-E
Confidence 456777889999999999888775443211 22222222111 113444444444433 2
Q ss_pred eccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccC
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQ 270 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~ 270 (1196)
+-. .+....+.+|+..+|.+..+ -+|-.++..|+||||++.|.++.+|. .|++-+ .+--....|. ..
T Consensus 125 ~dk---agD~~~~di~s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDE------kIRvs~ypa~f~Iesfc--lG 192 (390)
T KOG3914|consen 125 ADK---AGDVYSFDILSADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDE------KIRVSRYPATFVIESFC--LG 192 (390)
T ss_pred Eee---cCCceeeeeecccccCcchh-hhhhhhhheeeecCCCCEEEEecCCc------eEEEEecCcccchhhhc--cc
Confidence 211 02456788888754554433 35777789999999999999998874 355433 2211111122 23
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 271 IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|...|..++.-++ +.|++++.|+ +|++|+..++.
T Consensus 193 H~eFVS~isl~~~-~~LlS~sGD~---tlr~Wd~~sgk 226 (390)
T KOG3914|consen 193 HKEFVSTISLTDN-YLLLSGSGDK---TLRLWDITSGK 226 (390)
T ss_pred cHhheeeeeeccC-ceeeecCCCC---cEEEEecccCC
Confidence 4556888887655 4589999998 99999998765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.042 Score=70.87 Aligned_cols=158 Identities=15% Similarity=0.029 Sum_probs=98.7
Q ss_pred HhhCHHHHHHHHHHcC-----CC--cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 943 RLQRFENALKHIVSMG-----DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 943 ~L~ry~~Al~~l~~~g-----~~--~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
..|++++|++.|.++. ++ -+...+..+.+. +.+++|.+++ .+-..-..++..+.+-+...|++++|.
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 3567788888776652 11 124445555666 7777777765 111111123333445555577888888
Q ss_pred HHHHhCC-----CHHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----
Q 000992 1011 TTYFCCS-----SLEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG---- 1078 (1196)
Q Consensus 1011 ~~y~~ag-----~~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~---- 1078 (1196)
.+|.... -|.-.+..|.+.|++++|+.+-.++ +..++.. .+..+...+...|+.++|.++|.....
T Consensus 381 ~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~--T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV--TFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 8877654 3456677788888888888766543 3333332 356667777788888888888776432
Q ss_pred -----CHHHHHHHHHHhcCHHHHHHHHHhc
Q 000992 1079 -----DVTNGISLLIDARDWEEALRVAFMH 1103 (1196)
Q Consensus 1079 -----d~~~Ai~~y~~~~~w~eA~rla~~~ 1103 (1196)
-+..-|++|++++++++|..+..+-
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 1455788888888888888877653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0013 Score=80.84 Aligned_cols=139 Identities=16% Similarity=0.255 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC---CHHHHHHHHHHcCCHHHH
Q 000992 963 ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSGV 1035 (1196)
Q Consensus 963 ~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag---~~~kAl~~y~~~g~w~~a 1035 (1196)
+.-++++.+. +||+.|+.|+ .|++..+.++++||+||..+|+|++|-..|+++= +...-+.-|..+...+++
T Consensus 338 e~kL~iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknL 416 (933)
T KOG2114|consen 338 ETKLDILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNL 416 (933)
T ss_pred HHHHHHHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHH
Confidence 5567788888 9999999999 5888999999999999999999999988888763 222223333222222221
Q ss_pred HHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CHHHHHHHHHHhcCHHHHHHHHHhcCCc
Q 000992 1036 LTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DVTNGISLLIDARDWEEALRVAFMHRRE 1106 (1196)
Q Consensus 1036 l~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~~~Ai~~y~~~~~w~eA~rla~~~~~~ 1106 (1196)
-.....| ++...+...++..|= .+.|+-+.--+ |.+.+. |++.|++.+.+++..++|.+||.+++..
T Consensus 417 t~YLe~L~~~gla~~dhttlLLncY---iKlkd~~kL~e-fI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h 492 (933)
T KOG2114|consen 417 TSYLEALHKKGLANSDHTTLLLNCY---IKLKDVEKLTE-FISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH 492 (933)
T ss_pred HHHHHHHHHcccccchhHHHHHHHH---HHhcchHHHHH-HHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC
Confidence 1111110 112222222222222 22233222222 233233 6999999999999999999999998863
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.014 Score=71.08 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=99.8
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC------C------eEEEEec
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG------A------NIAAVYD 242 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG------~------~IAs~s~ 242 (1196)
....+.|+|.| .|| -++. ..|-|-|..+-+++++.+.|...|.++.|.|-. . +||++..
T Consensus 17 N~~A~Dw~~~G-LiA-ygsh-------slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIA-YGSH-------SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cccccccCccc-eEE-EecC-------ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 35789999998 677 4652 578888887999999999999999999998732 1 4666644
Q ss_pred CCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc---cCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 243 RKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN---CMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS---pDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
.+.|.+|+-- +-..- .+ .++...|.+++|= +|+ .+|+.-.... +|-||++.++.-.-|+...
T Consensus 88 ------~GrIil~d~~~~s~~~--~l-~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss---~lvLwntdtG~k~Wk~~ys- 154 (1062)
T KOG1912|consen 88 ------SGRIILVDFVLASVIN--WL-SHSNDSVQDLCWVPARDDSRDVLLAIHGSS---TLVLWNTDTGEKFWKYDYS- 154 (1062)
T ss_pred ------cCcEEEEEehhhhhhh--hh-cCCCcchhheeeeeccCcchheeEEecCCc---EEEEEEccCCceeeccccC-
Confidence 3568888731 11111 11 2334556677764 577 5666555555 8999987665432233221
Q ss_pred ecCCc-EEEEEccCCCceEEEEecCCcEEEEEEE
Q 000992 318 LRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 318 ~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
... .++.++|=.+..+.+.+..|.+...++.
T Consensus 155 --~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 155 --HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred --CcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 233 5588999888878888877766655543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0014 Score=78.24 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=74.5
Q ss_pred CCEEEEEEcc-CCCEEEE----EECCCcEEE----EECCCCeEEEe--e--eecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 76 DSITAFDYLM-EKEALIV----GTSSGLLLL----HSVDGNATEVV--G--RVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~~La~----as~dG~I~l----w~~~~~~~e~v--g--~~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
..+.++.||- +..++-+ .+.+|.+.+ |+...+++..+ . .....|.|.++||+++.|+.|..||+|++
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3467788876 3444433 356776654 55554444321 1 23578999999999999999999999999
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~ 209 (1196)
|+..-....-.... -....++|.|||.+|+ |++ +.+.+++||.
T Consensus 286 yD~~~~~t~~~ka~-----------------~~P~~iaWHp~gai~~-V~s------~qGelQ~FD~ 328 (545)
T PF11768_consen 286 YDTTRGVTLLAKAE-----------------FIPTLIAWHPDGAIFV-VGS------EQGELQCFDM 328 (545)
T ss_pred EEcCCCeeeeeeec-----------------ccceEEEEcCCCcEEE-EEc------CCceEEEEEe
Confidence 86432221111111 1236899999999999 776 4689999998
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0077 Score=67.57 Aligned_cols=151 Identities=18% Similarity=0.132 Sum_probs=87.5
Q ss_pred cEEEEEECCCCCEEEEEe--CCc-eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 118 GVRFISPSPDGDLLGVTT--GFG-QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s--~d~-tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
.+.++++||||+.+|.++ .++ .+.++... ....... . .......+|++||...+ +..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~--~---------------g~~l~~PS~d~~g~~W~-v~~- 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVL--T---------------GGSLTRPSWDPDGWVWT-VDD- 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-Ccceeec--c---------------CCccccccccCCCCEEE-EEc-
Confidence 689999999999999988 333 34333221 1111110 0 12457889999998777 443
Q ss_pred ccccCCCCEEEEE-ECCCCcEEE--Eecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEE----
Q 000992 195 CNSSKLHKRLKVW-ERDSGTLQA--SSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSF---- 265 (1196)
Q Consensus 195 d~~~~~d~~irVW-d~~~G~l~~--~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f---- 265 (1196)
.+...+++ +..+|.... ..-+ ..+.|.++.+||||..+|....+.. ..+..|..-.+++.- ...+
T Consensus 85 -----~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 85 -----GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-GGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred -----CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC-CCeEEEEEEEeCCCCCcceeccce
Confidence 23555666 332454333 2211 2227899999999999998875432 112223333343221 1111
Q ss_pred EeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 266 DINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.+.......+.+++|.+++++++.+...+
T Consensus 159 ~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred EecccccCcceeeeecCCCEEEEEeCCCC
Confidence 11111234689999999999887776554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.14 Score=61.58 Aligned_cols=204 Identities=13% Similarity=0.043 Sum_probs=110.4
Q ss_pred EEEEEEccCCCEEEEE-ECCCc----EEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCce-----------
Q 000992 78 ITAFDYLMEKEALIVG-TSSGL----LLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQ----------- 139 (1196)
Q Consensus 78 v~~v~~spd~~~La~a-s~dG~----I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~t----------- 139 (1196)
+..+.+||||+.||.+ +.+|. |++.|+.+++.- .+.... -..++|++||+.+.....+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4468999999999976 45555 899999998653 222211 123999999999988875442
Q ss_pred EEEEeccCceeeeeecccccCccccccCccccCCC-C-eEEEEEccCCceEEEeeccccccCCC-CEEEEEECCCC----
Q 000992 140 ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS-F-KSPISWRGDGKYFATLSEFCNSSKLH-KRLKVWERDSG---- 212 (1196)
Q Consensus 140 V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~-~-v~~isWspDG~~lAsvss~d~~~~~d-~~irVWd~~~G---- 212 (1196)
|..|.. +....+- .. -|.+.+. . ...+.+++||+++. +.+... .. ..+.+-+...+
T Consensus 204 v~~~~~-gt~~~~d--------~l----vfe~~~~~~~~~~~~~s~d~~~l~-i~~~~~---~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 204 VYRHKL-GTPQSED--------EL----VFEEPDEPFWFVSVSRSKDGRYLF-ISSSSG---TSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EEEEET-TS-GGG---------EE----EEC-TTCTTSEEEEEE-TTSSEEE-EEEESS---SSEEEEEEEECCCTTTSS
T ss_pred EEEEEC-CCChHhC--------ee----EEeecCCCcEEEEEEecCcccEEE-EEEEcc---ccCCeEEEEeccccCCCc
Confidence 333322 2222210 01 1222122 2 57899999999987 554332 23 56888888554
Q ss_pred -cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee--EEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 213 -TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE--RSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 213 -~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~--~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
.........++....+... .+.++..+..+. ....|.-.+.+... +....+.. +...+.--.++..+..|+.
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHH-GDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEE
T ss_pred CCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCC---CCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEE
Confidence 4555555555655555555 444444433321 23445444433221 11111221 1222333444556777777
Q ss_pred EEccCCcceEEEEEec
Q 000992 290 VVRFEEYDSVKICFFS 305 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~ 305 (1196)
.........|++|+..
T Consensus 342 ~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 342 SYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTEEEEEEEETT
T ss_pred EEEECCccEEEEEECC
Confidence 6666545578888887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00038 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.2
Q ss_pred EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
.....|.+.|++++|+|++..||+++.|++|++|+
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34556789999999999999999999999999985
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.012 Score=73.67 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=103.6
Q ss_pred CCEEEEEEccCCCEEEEEE------CCCc--EEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEecc
Q 000992 76 DSITAFDYLMEKEALIVGT------SSGL--LLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMTHD 146 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as------~dG~--I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~~~ 146 (1196)
..+.+.+.||||+.+|... .|+. |.+++..+........ ....+-+|||||+.|++++....+. +....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3678999999999998776 2444 4444543333222222 2488999999999999997543432 22211
Q ss_pred Cc-eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEE---EECCCCcEEEEe----
Q 000992 147 WD-LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKV---WERDSGTLQASS---- 218 (1196)
Q Consensus 147 ~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irV---Wd~~~G~l~~~~---- 218 (1196)
.. .+....+.... . .+ ..+..|..+.|||||+.+|.+. +++|.| =....|+ ....
T Consensus 428 ~~gql~~~~vd~ge----~--~~--~~~g~Issl~wSpDG~RiA~i~--------~g~v~Va~Vvr~~~G~-~~l~~~~~ 490 (591)
T PRK13616 428 ATGQLARTPVDASA----V--AS--RVPGPISELQLSRDGVRAAMII--------GGKVYLAVVEQTEDGQ-YALTNPRE 490 (591)
T ss_pred CCceEEEEeccCch----h--hh--ccCCCcCeEEECCCCCEEEEEE--------CCEEEEEEEEeCCCCc-eeecccEE
Confidence 11 11111111110 0 00 1235689999999999999433 145555 3334665 2221
Q ss_pred --ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccC
Q 000992 219 --ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 219 --e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
........+++|.++|.++ .+..+. ...|...+.+|..... ++.. ....|.+|+=++ +++. +...++
T Consensus 491 l~~~l~~~~~~l~W~~~~~L~-V~~~~~----~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~-~~iy-v~~~~g 560 (591)
T PRK13616 491 VGPGLGDTAVSLDWRTGDSLV-VGRSDP----EHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASP-STVY-VTDARA 560 (591)
T ss_pred eecccCCccccceEecCCEEE-EEecCC----CCceEEEecCCccccc--cCCCCccCceEEEecCC-ceEE-EEcCCc
Confidence 1223335789999999966 444332 2445555666654321 1211 123566777666 3333 334444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.027 Score=66.85 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=109.5
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCC--cH----HHHHHHHHHHhcChHHHHhhc-----CCcH----HHHHHHHHHHHHHhc
Q 000992 938 YTIDLRLQRFENALKHIVSMGDS--YH----ADCLNLMKKYAQLFPLGLKLI-----TDPA----KMEQVLEAWADHLSD 1002 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~--~~----~~ale~~~~~~~ly~~AL~L~-----~d~~----~~~~i~~~~A~~L~~ 1002 (1196)
..+....|+|++|+..|.++-.. .. ..-...+.+. +.|++|++++ .+|. ....++..+|..+..
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 44555678999999998877421 11 1123344667 8899998887 2222 123455677888888
Q ss_pred ccCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1003 VKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
++++++|..+|.++-.. -....+|...|++++|+.+..+. ..++.........++..+...|++.+|...+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988886321 12336778888999988776553 1233333445667788888889999999888
Q ss_pred HHhcC---C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1074 LDYCG---D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~yl~---d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+... + ...-+.+|++.+++++|+.+..+
T Consensus 273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 273 RRALEEYPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77432 1 23346678888899999876654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0029 Score=79.02 Aligned_cols=144 Identities=13% Similarity=0.090 Sum_probs=80.0
Q ss_pred CcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 117 GGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
..+.+++.||||+.+|.... |..-.||.-....-. ..+.. + ......+|+|||+.+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-------------g--~~~t~PsWspDG~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-------------G--HSLTRPSWSLDADAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-------------C--CCCCCceECCCCCceEE
Confidence 36889999999999999872 433344431111000 11110 1 12478999999998885
Q ss_pred eeccccccCCCCEEEEE-----------ECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE--EeC
Q 000992 191 LSEFCNSSKLHKRLKVW-----------ERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF--YER 257 (1196)
Q Consensus 191 vss~d~~~~~d~~irVW-----------d~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~--~e~ 257 (1196)
++. +++..++. +.+.|+... ..++.+.++.|||||+.||..... .|.+ -.+
T Consensus 414 v~d------g~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g-------~v~Va~Vvr 477 (591)
T PRK13616 414 VVD------GNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGG-------KVYLAVVEQ 477 (591)
T ss_pred Eec------CcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECC-------EEEEEEEEe
Confidence 432 12233443 332333322 235668999999999999987641 2333 233
Q ss_pred --CCeeE-EEE-EeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 258 --NGLER-SSF-DINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 258 --nGl~~-~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
.|..+ +.. .+.......+.+++|.+|++++ ++..+
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~ 516 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSD 516 (591)
T ss_pred CCCCceeecccEEeecccCCccccceEecCCEEE-EEecC
Confidence 34211 100 0111112346889999999955 55444
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=77.52 Aligned_cols=130 Identities=15% Similarity=0.191 Sum_probs=89.1
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCC-----CCEEEEEeCCceEEEEeccCceee-eeeccc
Q 000992 84 LMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPD-----GDLLGVTTGFGQILVMTHDWDLLY-ENPLEE 157 (1196)
Q Consensus 84 spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPD-----g~~LA~~s~d~tV~l~~~~~d~~~-~~~l~~ 157 (1196)
--+|+.++++|.||+|.+-...+.+-...-.+...|.+++++|| .+..++|+..| +++..|.|=.-. ...++
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~- 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS- 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-
Confidence 45799999999999999988876544443446789999999999 66788888777 777667662211 11122
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce------eEEEEc
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG------AVLEWM 231 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v------~slaws 231 (1196)
...+.|.+|+|++ .++| =++ |--|||||+.+++.+...++....+ ..+.|.
T Consensus 158 -------------~~eG~I~~i~W~g--~lIA-Wan-------d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~ 214 (846)
T KOG2066|consen 158 -------------EGEGPIHSIKWRG--NLIA-WAN-------DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ 214 (846)
T ss_pred -------------cCccceEEEEecC--cEEE-Eec-------CCCcEEEeccccceeeccCCCCCCCCcccCCCceEec
Confidence 2346789999985 5777 343 3458999997777666555433322 567777
Q ss_pred CCCCeEE
Q 000992 232 PSGANIA 238 (1196)
Q Consensus 232 PdG~~IA 238 (1196)
++.+++.
T Consensus 215 ~~~~LVI 221 (846)
T KOG2066|consen 215 DEDRLVI 221 (846)
T ss_pred CCCeEEE
Confidence 7766543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.02 Score=63.73 Aligned_cols=193 Identities=16% Similarity=0.125 Sum_probs=102.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG~I 99 (1196)
.+.+++||+++++||++.+ ...|++++. . ++. ++.+++...+-.-+|+|.-++.+ +++. .++++
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~--~-G~v----------lr~i~l~g~~D~EgI~y~g~~~~-vl~~Er~~~L 88 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL--D-GKV----------LRRIPLDGFGDYEGITYLGNGRY-VLSEERDQRL 88 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET--T---E----------EEEEE-SS-SSEEEEEE-STTEE-EEEETTTTEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC--C-CCE----------EEEEeCCCCCCceeEEEECCCEE-EEEEcCCCcE
Confidence 6899999999999999977 556777776 2 333 22222322256889999877754 4455 48889
Q ss_pred EEEECC--CCeE-----E--Eee---eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccC
Q 000992 100 LLHSVD--GNAT-----E--VVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 100 ~lw~~~--~~~~-----e--~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
.+.+.+ +..+ . .+| ....|+..++|+|.++.|.++-+.....++...... ....+.... ...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-~~~~~~~~~-~~~~~~~ 166 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-GGFDLFVSD-DQDLDDD 166 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT--SS--EEEE--HHHH-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-Cccceeecc-ccccccc
Confidence 887773 2211 1 122 234679999999999999988776655554322100 000000000 0000000
Q ss_pred ccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---C------ceeEEEEcCCCCeE
Q 000992 168 ELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA---F------MGAVLEWMPSGANI 237 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~---~------~v~slawsPdG~~I 237 (1196)
. ..-.....+++.|.. .+++ .|. ..+.|-++|+ +|+..+...-.. + .-..|+|.|+|++.
T Consensus 167 ~--~~~~d~S~l~~~p~t~~lli-LS~------es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 167 K--LFVRDLSGLSYDPRTGHLLI-LSD------ESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp T----SS---EEEEETTTTEEEE-EET------TTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred c--ceeccccceEEcCCCCeEEE-EEC------CCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 0 011235788888865 5555 554 4689999998 999877653222 1 23789999999876
Q ss_pred EEE
Q 000992 238 AAV 240 (1196)
Q Consensus 238 As~ 240 (1196)
.++
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00057 Score=52.80 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=35.1
Q ss_pred CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 212 GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 212 G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
|++..++++|.+.+.+++|+|++++||+++.| ..|++|+
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D------~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSD------GTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETT------SEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCC------CEEEEEC
Confidence 56788889999999999999999999999986 4699996
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0054 Score=77.83 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=89.6
Q ss_pred cCCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhh
Q 000992 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKL 982 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L 982 (1196)
+.++.+.+..+++.-.+++ .+.++.+...+|+|++|+..|.++ .++.. ..+. ...+. +.|++|+..
T Consensus 378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~-~~~~~-g~~~eA~~~ 455 (615)
T TIGR00990 378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV-TQYKE-GSIASSMAT 455 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH-HHHHC-CCHHHHHHH
Confidence 3455555555555544422 244456667788888888888765 22211 2222 22455 667777777
Q ss_pred c-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH---------------HHHHHHHHHcCCHHHHHHHHhh-
Q 000992 983 I-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL---------------EKAMKAYRASGNWSGVLTVAGL- 1041 (1196)
Q Consensus 983 ~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~---------------~kAl~~y~~~g~w~~al~la~~- 1041 (1196)
+ ..| ....++..+|.-+...++|++|...|.++-.. .+|...|...|++.+|+.+..+
T Consensus 456 ~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 456 FRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6 222 23456667788888888888888888775432 1233344445677777765544
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..+++.. .....+|..+...|++.+|...|.+
T Consensus 535 l~l~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 535 LIIDPECD-IAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HhcCCCcH-HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 22233222 2345566666666666666666555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.029 Score=67.25 Aligned_cols=108 Identities=19% Similarity=0.306 Sum_probs=71.4
Q ss_pred hHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC---------------------CCHHHHHHHHHHcCCHHH
Q 000992 976 FPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGNWSG 1034 (1196)
Q Consensus 976 y~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~~~g~w~~ 1034 (1196)
|++|++| ||. +.+.+-.+|.-|.+.+.|++|...|++| |..+-|+++|.++
T Consensus 241 y~eAvkl--dP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra----- 312 (966)
T KOG4626|consen 241 YEEAVKL--DPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA----- 312 (966)
T ss_pred HHHhhcC--CCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH-----
Confidence 6666665 443 4455667788888888889998888887 5567777777543
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH---hcCCHHHH----HHHHHHhcCHHHHHHH
Q 000992 1035 VLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD---YCGDVTNG----ISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1035 al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~---yl~d~~~A----i~~y~~~~~w~eA~rl 1099 (1196)
+++--+ . .+-+..||..|++.|+..||..+|.+ |+-....| -..|-+.+.+++|.|+
T Consensus 313 -l~~~P~---F----~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~l 376 (966)
T KOG4626|consen 313 -LELQPN---F----PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRL 376 (966)
T ss_pred -HhcCCC---c----hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHH
Confidence 332222 1 24566789999999999999999866 22233332 2345566667777665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.16 Score=66.44 Aligned_cols=182 Identities=12% Similarity=0.015 Sum_probs=92.3
Q ss_pred CCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHc---CCCcHHH---HHHHHHHHhcChHHHHhhc-
Q 000992 916 RDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM---GDSYHAD---CLNLMKKYAQLFPLGLKLI- 983 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~---ale~~~~~~~ly~~AL~L~- 983 (1196)
.++.+-+..++++....+ ......+....|++++|+++|.++ .+..... ...+..+. +.+++|++++
T Consensus 445 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence 444444555555544311 233345666678888888888764 2221111 11233445 6677777666
Q ss_pred ----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC--------CHHHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHH
Q 000992 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLLK-LGKDEVA 1050 (1196)
Q Consensus 984 ----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--------~~~kAl~~y~~~g~w~~al~la~~l~-~~~~~~~ 1050 (1196)
.+|. ....+..+|..+...+++++|...|.++- .+.....+|...|++++|+.+....- ..+.. .
T Consensus 524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 601 (899)
T TIGR02917 524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS-P 601 (899)
T ss_pred HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-H
Confidence 2332 23455566677777777777777766541 11223345555566666665544321 01111 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
+....++..+...|++.+|...|.+.+. + ......+|.+.++|++|+...
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 658 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL 658 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555566666666666666554321 1 123334455555555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.032 Score=72.87 Aligned_cols=156 Identities=12% Similarity=-0.045 Sum_probs=71.2
Q ss_pred HHhhCHHHHHHHHHHcC---CCc---HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 942 LRLQRFENALKHIVSMG---DSY---HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g---~~~---~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
...|++++|+..+.++- +.. +......+... +.|++|++.| .+|. ....+..+|..+...+++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA-GDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 34566666666655431 110 11112233444 5566666555 1222 2234445666666666666666
Q ss_pred HHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----
Q 000992 1011 TTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG---- 1078 (1196)
Q Consensus 1011 ~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~---- 1078 (1196)
.+|.++-. +-....++...|++++|+.+...+.............++..+...|++.+|...|.+.+.
T Consensus 656 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 735 (899)
T TIGR02917 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS 735 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 66655421 122234455555566665555443100001122334455555556666666655554221
Q ss_pred --CHHHHHHHHHHhcCHHHHHHH
Q 000992 1079 --DVTNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1079 --d~~~Ai~~y~~~~~w~eA~rl 1099 (1196)
..-....+|.+.++|++|...
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHH
Confidence 112233444455555555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.092 Score=70.03 Aligned_cols=156 Identities=10% Similarity=0.004 Sum_probs=113.4
Q ss_pred hhCHHHHHHHHHHcC-------CC--cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 944 LQRFENALKHIVSMG-------DS--YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g-------~~--~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.|++++|.+.|.++. ++ -+...+..+.+. +.+++|+++| .+-......+.....-+...+++++|
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 478899999887762 11 135567788898 9999999998 22111223444445566678999999
Q ss_pred HHHHHhCCC---------HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1010 ATTYFCCSS---------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1010 a~~y~~ag~---------~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
..+|..... |.-.+++|.++|++++|+.+-..+ +..++ ...+..+...+.+.|++++|.++|.+..
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999876542 456678899999999988766543 22222 2467888999999999999999998742
Q ss_pred -----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 -----GD---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 -----~d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
-| +...|..||+.+++++|+.+...
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 12 46789999999999999988663
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.019 Score=62.45 Aligned_cols=129 Identities=12% Similarity=-0.067 Sum_probs=83.8
Q ss_pred CCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEE
Q 000992 200 LHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~ 276 (1196)
.|+++|+.+. +|.....--... -.+.+++.||||++.++.++- ..|-+|+.. |..+-...+ .+.++.-.
T Consensus 136 ndht~k~~~~-~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds------~~Vf~y~id~~sey~~~~~~-a~t~D~gF 207 (344)
T KOG4532|consen 136 NDHTGKTMVV-SGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDS------RRVFRYAIDDESEYIENIYE-APTSDHGF 207 (344)
T ss_pred CCcceeEEEE-ecCcccceeeccccceeeeEEcCCCceEEEecCC------CcceEEEeCCccceeeeeEe-cccCCCce
Confidence 4689999988 544332211111 126899999999999999873 467777643 332221111 23345567
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE---EecCCc-EEEEEccCCCceEEEEec
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YLRRDG-IRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~---~~~~~~-~~v~Wsp~~~~~L~~~~~ 340 (1196)
..+||......|++..|+ ++-|||+.+..- +-.+.. -++++. ..+.|+|-|+..|...+.
T Consensus 208 ~~S~s~~~~~FAv~~Qdg---~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDG---TCAIYDVRNMAT-PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred eeeeccCcceEEEEecCC---cEEEEEeccccc-chhhhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 899999999999999999 999999986431 111111 122233 778999988776666653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.042 Score=71.56 Aligned_cols=106 Identities=15% Similarity=-0.040 Sum_probs=58.2
Q ss_pred HHHHHhcccCHHHHHHHHHhCC--C-------HHHHHH---HHHHcCCHHHHHHHHhhcC-CCH-------------H-H
Q 000992 996 WADHLSDVKCFEDAATTYFCCS--S-------LEKAMK---AYRASGNWSGVLTVAGLLK-LGK-------------D-E 1048 (1196)
Q Consensus 996 ~A~~L~~~~~~~eAa~~y~~ag--~-------~~kAl~---~y~~~g~w~~al~la~~l~-~~~-------------~-~ 1048 (1196)
+|+.+...+++++|..+|.++- + .+.... +|.+.|++++|+....++. ..+ + .
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 4667777777777777777652 1 111222 4456677777776544321 001 1 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1049 VAKLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1049 ~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.......+|..+...|++.+|..++.+-+. + .-.-..+|...+++++|+.+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 123445667777777888887777766321 1 1222345556666777766544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.035 Score=61.27 Aligned_cols=207 Identities=15% Similarity=0.039 Sum_probs=125.0
Q ss_pred CCCcEEEEECCCCeE---EEee-eecCcEEEEEEC---CCCC-EEEEEeCCceEEEEeccCceeeeeecccccCcccccc
Q 000992 95 SSGLLLLHSVDGNAT---EVVG-RVEGGVRFISPS---PDGD-LLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~---e~vg-~~~~~I~~~awS---PDg~-~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
..|.+.+++....+. ..+. .-..++..+.|+ -||. .|+-+-..|+|.+.-.+.+. ....+.+.. ++.++.
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~-ss~~L~~ls-~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDE-SSVHLRGLS-SKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccce-eeeeecccc-hhhhhh
Confidence 456666666643211 1111 113456667775 3455 56667778888877544332 222222222 222210
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE--EeccCCCceeEEEEcCCC-CeEEEEecC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SSELKAFMGAVLEWMPSG-ANIAAVYDR 243 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~--~~e~~~~~v~slawsPdG-~~IAs~s~d 243 (1196)
....++.|++-|.-++ ++- .++.+-+-+-..+.+.+ +.++|+...+..+|+-.. +++-+|++|
T Consensus 122 -------~~~lslD~~~~~~~i~-vs~------s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD 187 (339)
T KOG0280|consen 122 -------VEALSLDISTSGTKIF-VSD------SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDD 187 (339)
T ss_pred -------eeeeEEEeeccCceEE-EEc------CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCC
Confidence 0236889999998887 553 34566644443676766 778888888888876543 677888876
Q ss_pred CCCCCCCeEEEEeCCCeeEEEEEec--cCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-
Q 000992 244 KSENKCPSIVFYERNGLERSSFDIN--EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR- 319 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~- 319 (1196)
. .+..|+.. .-++|..+ .-++..|.+|.=|| ++.++|+|+.|. .|++||+.|.. +.+.-..
T Consensus 188 ~------~l~~~D~R--~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe---~i~~~DtRnm~----kPl~~~~v 252 (339)
T KOG0280|consen 188 G------SLSCWDIR--IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE---CIRVLDTRNMG----KPLFKAKV 252 (339)
T ss_pred c------eEEEEEec--CCcceeeecceeeecceEEEecCCCCCceEEEecccc---ceeeeehhccc----CccccCcc
Confidence 4 68899843 12234333 12345688888775 688999999998 99999999853 3332111
Q ss_pred CC-cEEEEEccCCC
Q 000992 320 RD-GIRFMWHPTKP 332 (1196)
Q Consensus 320 ~~-~~~v~Wsp~~~ 332 (1196)
.+ ++.+.|||...
T Consensus 253 ~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 253 GGGVWRIKHHPEIF 266 (339)
T ss_pred ccceEEEEecchhh
Confidence 12 38889999775
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.035 Score=75.65 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=109.1
Q ss_pred cCCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHcCCCcHH----------------HHHHHHHHHh
Q 000992 915 QRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSMGDSYHA----------------DCLNLMKKYA 973 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~----------------~ale~~~~~~ 973 (1196)
++++.+=+..++++-++.+ .+.........+++++|+.+|.++-..... +..+.+...
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~- 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS- 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC-
Confidence 3455444555555544421 122223334467778888777765321100 011223555
Q ss_pred cChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-
Q 000992 974 QLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK- 1043 (1196)
Q Consensus 974 ~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l~- 1043 (1196)
+.+++|++++ ..|... .+...+|+.+..++++++|...|.++-.. -....+|...|++++|+.....+.
T Consensus 587 G~~~eA~~~l~~~p~~~-~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 587 GKEAEAEALLRQQPPST-RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred CCHHHHHHHHHhCCCCc-hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6788888887 444322 35567888888899999998888866321 233467778888888887665532
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC----H---------HHHHHHHHHhcCHHHHHHHH
Q 000992 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD----V---------TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d----~---------~~Ai~~y~~~~~w~eA~rla 1100 (1196)
..++. ......+|..+...|++.+|.++|.+-+.. . ..+..+|.+.+++++|+..-
T Consensus 666 ~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 666 TANDS-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred cCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11222 234556778888889999999888774321 1 12345677888888887763
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0036 Score=71.34 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHH----
Q 000992 946 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE---- 1020 (1196)
Q Consensus 946 ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~---- 1020 (1196)
+|++|...|.++|. .++.. +.|++|.+.| .- ..+....++....-+.|.+|+.+|.+. +++
T Consensus 30 ~~e~Aa~~y~~Aa~--------~fk~~-~~~~~A~~ay~kA----a~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~ 95 (282)
T PF14938_consen 30 DYEEAADLYEKAAN--------CFKLA-KDWEKAAEAYEKA----ADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE 95 (282)
T ss_dssp HHHHHHHHHHHHHH--------HHHHT-T-CHHHHHHHHHH----HHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred CHHHHHHHHHHHHH--------HHHHH-hccchhHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence 57777777666542 33444 5555555444 10 111111222222333344555555444 443
Q ss_pred ---HHHHHHHHcCCHHHHHHHHhh----cC-C--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000992 1021 ---KAMKAYRASGNWSGVLTVAGL----LK-L--GKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1196)
Q Consensus 1021 ---kAl~~y~~~g~w~~al~la~~----l~-~--~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~ 1090 (1196)
+|++.|...|+++.+-.+..+ +. . +.++-.+.+.+-++.+...+....|..++. .+..++++.
T Consensus 96 ~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~-------~~A~l~~~l 168 (282)
T PF14938_consen 96 CYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLL-------KAADLYARL 168 (282)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHH-------HHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHH-------HHHHHHHHh
Confidence 344555555555554332221 11 0 222333444444444444444444444433 466788888
Q ss_pred cCHHHHHHHHHh
Q 000992 1091 RDWEEALRVAFM 1102 (1196)
Q Consensus 1091 ~~w~eA~rla~~ 1102 (1196)
++|++|+.+-.+
T Consensus 169 ~~y~~A~~~~e~ 180 (282)
T PF14938_consen 169 GRYEEAIEIYEE 180 (282)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 899998876544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.065 Score=68.08 Aligned_cols=188 Identities=16% Similarity=0.068 Sum_probs=116.7
Q ss_pred HHhcCCcchhhHHHHHHhcCChh-----hhcccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHH
Q 000992 912 LNSQRDPKEFLPYLQELESMPPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGL 980 (1196)
Q Consensus 912 q~sq~DpkeYlpfL~~L~~l~~~-----~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL 980 (1196)
...++|+.+=+..+++.-.+.+. ...+.+...+|+|++|+..|.++ .++..+ ..-.+.... +.|++|+
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~ 419 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK-GEFAQAG 419 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence 33467777778888877776443 45567778899999999998765 222221 111233556 7888888
Q ss_pred hhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhh-cCCCH
Q 000992 981 KLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGL-LKLGK 1046 (1196)
Q Consensus 981 ~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~-l~~~~ 1046 (1196)
+.| .+|... ..+..+|.-+...+++++|...|.++-.. ...-.+|...|+|++|+....+ +.+.+
T Consensus 420 ~~~~kal~l~P~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 420 KDYQKSIDLDPDFI-FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHcCccCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 887 355433 34567889999999999999999987321 1234667778888888754433 11121
Q ss_pred H------HHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-C------HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1047 D------EVAKLAQELCEELQALGKPGEAAKIALDYCG-D------VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1047 ~------~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d------~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+ .+..+.......+...|++.+|.++|.+-+. + ......+|.+.+++++|+....
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 1 1111222222333446889999888876321 1 1234566677778888876543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.056 Score=71.48 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=108.3
Q ss_pred ccHHHH--hhCHHHHHHHHHHcCCC--cHHHHHHHHHHHhcChHHHHhhc---------CCcHHHHHHHHHHHHHHhccc
Q 000992 938 YTIDLR--LQRFENALKHIVSMGDS--YHADCLNLMKKYAQLFPLGLKLI---------TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 938 ~~Id~~--L~ry~~Al~~l~~~g~~--~~~~ale~~~~~~~ly~~AL~L~---------~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..|++| .|+.++|.+.|.++..+ -+...+..+.+| +.+++|++++ .|...+..++. -+...+
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~----a~~~~g 603 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLC----ACSRSG 603 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHH----HHhhcC
Confidence 355665 46899999998887322 246667888899 9999999998 13334444443 355678
Q ss_pred CHHHHHHHHHhCC----------CHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1005 CFEDAATTYFCCS----------SLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag----------~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
.+++|..+|.... -|.--+++|.++|++++|..+..+++..++. .+...|...+...++.+.|..+..
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~--~~~~aLl~ac~~~~~~e~~e~~a~ 681 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP--AVWGALLNACRIHRHVELGELAAQ 681 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHH
Confidence 8999999988764 2455678999999999999999887655443 244555555655666665544433
Q ss_pred Hh-------cCCHHHHHHHHHHhcCHHHHHHHHH
Q 000992 1075 DY-------CGDVTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1075 ~y-------l~d~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+- .+-+-.-..+|.+.++|++|.++-.
T Consensus 682 ~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 31 1334556678999999999988754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.087 Score=67.40 Aligned_cols=159 Identities=9% Similarity=-0.006 Sum_probs=101.3
Q ss_pred HHHhhCHHHHHHHHHHcCC----CcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHH
Q 000992 941 DLRLQRFENALKHIVSMGD----SYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 941 d~~L~ry~~Al~~l~~~g~----~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
....|++++|+..+.++-. +.. -.....+.+. +.|++|++.+ .+|. ...+...+|.-+...+++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchh
Confidence 3456889999988776311 101 1122344566 7888888777 2333 35566778899999999986
Q ss_pred ----HHHHHHhCCCH----HHH----HHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 ----AATTYFCCSSL----EKA----MKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 ----Aa~~y~~ag~~----~kA----l~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|..+|.++-.. ..+ ..+|...|+|++|+...++. ..+++. ......++..+...|++.+|...|.+
T Consensus 265 A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 265 AKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67777766322 122 25566778888888655432 112222 23455688888999999999999887
Q ss_pred hcC-CHHH------HHHHHHHhcCHHHHHHHHHh
Q 000992 1076 YCG-DVTN------GISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1076 yl~-d~~~------Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+. +++. +..+|.+.+++++|+....+
T Consensus 344 al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 344 LAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 542 2221 23467888999999876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.036 Score=65.74 Aligned_cols=164 Identities=12% Similarity=-0.014 Sum_probs=112.0
Q ss_pred cccHHHHhhCHHHHHHHHHHcCCC--c--H------HHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhc
Q 000992 937 RYTIDLRLQRFENALKHIVSMGDS--Y--H------ADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~g~~--~--~------~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
...+....|+|++|+..+.++-.. . . ......+... +.|++|++++ .........+..+|.-+..
T Consensus 75 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA-GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 345666788999999987764211 0 0 1113344666 8899999988 2122345677788899999
Q ss_pred ccCHHHHHHHHHhCCCHH-------------HHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHH
Q 000992 1003 VKCFEDAATTYFCCSSLE-------------KAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGE 1068 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~~-------------kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~e 1068 (1196)
.++|++|...|.++-+.. .....|...|++.+|+....+. ...++. ......++..+...|++.+
T Consensus 154 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~ 232 (389)
T PRK11788 154 EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC-VRASILLGDLALAQGDYAA 232 (389)
T ss_pred hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-HHHHHHHHHHHHHCCCHHH
Confidence 999999999998763211 1223556778999998766552 112222 2355678898999999999
Q ss_pred HHHHHHHhcC-CH-------HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1069 AAKIALDYCG-DV-------TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1069 Aa~i~~~yl~-d~-------~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
|.+++.+.+. ++ ...+.+|++.+++++|+....+
T Consensus 233 A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 233 AIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988553 22 2345789999999999987654
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.23 Score=65.80 Aligned_cols=157 Identities=15% Similarity=0.056 Sum_probs=82.0
Q ss_pred hhCHHHHHHHHHHcC-----C--CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHH
Q 000992 944 LQRFENALKHIVSMG-----D--SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAAT 1011 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g-----~--~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~ 1011 (1196)
.|++++|++.|.++. + .-+...+....+. +.+++|.+++ .+......++...-+-+...+++++|..
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 455667776666541 1 1134444555555 6666666665 1111222344444455555667777777
Q ss_pred HHHhCCC-----HHHHHHHHHHcCCHHHHHHHHhhcC--CCHHHH--H-------------------------------H
Q 000992 1012 TYFCCSS-----LEKAMKAYRASGNWSGVLTVAGLLK--LGKDEV--A-------------------------------K 1051 (1196)
Q Consensus 1012 ~y~~ag~-----~~kAl~~y~~~g~w~~al~la~~l~--~~~~~~--~-------------------------------~ 1051 (1196)
+|.+..+ |.--+..|.+.|++.+|+.+-.++. ..++.. . .
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 7666543 3444556666666666655443321 111111 0 0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCC---HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCGD---VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d---~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+...+.+.+.+.|+.++|-++|.+.-.| +..-|..|++.+++++|+.+-.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 1223334555566666666666653111 3456777888888888877655
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.011 Score=71.44 Aligned_cols=275 Identities=13% Similarity=0.163 Sum_probs=147.6
Q ss_pred ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee-eecccccCccccccCccccCCC-CeEEEEEccCCceEEEee
Q 000992 115 VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE-NPLEELAEGFDVHEPELSSSFS-FKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 115 ~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~-~~l~~~~~~~~Vs~tqf~~~~~-~v~~isWspDG~~lAsvs 192 (1196)
+++++.+++.+|-|+-+|+|+.-|-+.+ +.+ ++.+- ..++..+ ...|..+||..|.. ..+-++||+.-.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~-dld-~p~~ppr~l~h~t-pw~vad~qws~h~a~~~wiVsts~qka------ 93 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYII-DLD-DPFTPPRWLHHIT-PWQVADVQWSPHPAKPYWIVSTSNQKA------ 93 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEE-ecc-CCCCCceeeeccC-cchhcceecccCCCCceeEEecCcchh------
Confidence 4688999999999999999998876544 111 11110 0111110 11122344443332 234455555443
Q ss_pred ccccccCCCCEEEEEECC---CCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec
Q 000992 193 EFCNSSKLHKRLKVWERD---SGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN 268 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~---~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~ 268 (1196)
-||+.. +......+-+|...+..+-|.|+.. .+|+++.|. .|..|+...-+.--+...
T Consensus 94 ------------iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt------~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 94 ------------IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDT------YVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred ------------hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccc------cceeeeccCCCcceeeee
Confidence 234321 1122223445777789999999875 678888764 478888543222111111
Q ss_pred cCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecC----CEEEEEEEEEEec----C-CcEEEEEccCCCceEEEE
Q 000992 269 EQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSN----NHWYLKYEIRYLR----R-DGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 269 ~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n----~~wylkq~l~~~~----~-~~~~v~Wsp~~~~~L~~~ 338 (1196)
. -...-..|+||- |+.+||+.-... |.+|+... .+| +|..+.... . ......|++....++..|
T Consensus 156 ~-w~s~asqVkwnyk~p~vlasshg~~----i~vwd~r~gs~pl~s-~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 156 S-WRSAASQVKWNYKDPNVLASSHGND----IFVWDLRKGSTPLCS-LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred c-ccccCceeeecccCcchhhhccCCc----eEEEeccCCCcceEE-ecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 1 012355799994 788999876655 99999863 233 443322110 0 013456888887778887
Q ss_pred ecCCcEEEEEE-------EEeee--cCCCeeEEE--EcCCEEEEeec----cccC---CCCCceeeee-cCCCCEEEEEE
Q 000992 339 TLDGQITTYNF-------IWTTA--VMENSTALV--IDGSKILVTPL----SLSL---MPPPMYLFSL-KFPTAVTEMAF 399 (1196)
Q Consensus 339 ~~~g~~~~~~~-------~~~~~--~~d~~~v~v--iDg~~l~lt~l----~~~~---vpppm~~~~l-~~~~~V~~Vaf 399 (1196)
+.+......+. +|... |-+.|.+.. ..|+.+.+... ..|+ .|.|. +++ +|++.|...-|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pV--h~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPV--HTFVGHDDVVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcce--eeecCcchHHHHHhh
Confidence 75443322111 12211 333333222 22332222211 1222 23443 444 58887776666
Q ss_pred ecCCC--------CCEEEEEECCCcEEEEeCCC
Q 000992 400 YSKSS--------KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 400 spdg~--------~~~lAs~~~dg~v~lw~~~~ 424 (1196)
-..++ +-.|++=+.|.++++|-.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 55443 14699999999999999865
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.87 E-value=1.5 Score=52.07 Aligned_cols=98 Identities=11% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
.++.||+++.++.++.+|. .+++..|+.. ++..+. ..+ ..++..+.+++.+|.+.-+|..+|++.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~--~tG~~~W~~~-~~~~~~-------~~p-----~v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDA--ETGKRLWRVD-LDERLS-------GGV-----GADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEc--cCCcEeeeec-CCCCcc-------cce-----EEcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 4788999999888999998 6777667643 221111 111 235677888889999999999877653
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
-.-...+.+.+.--- ++..+..++.++.|..++
T Consensus 129 W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d 161 (377)
T TIGR03300 129 WRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALD 161 (377)
T ss_pred eeeccCceeecCCEE-ECCEEEEECCCCeEEEEE
Confidence 111112222211111 345666677888887776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.034 Score=61.35 Aligned_cols=185 Identities=11% Similarity=0.018 Sum_probs=113.0
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEEEECCCcEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLLL 101 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~I~l 101 (1196)
...+-|++-+..+|+.-+++++-.++.+ .... .++.+ .+.|.+ ..+-.+|+-. -+.+-+|+.||.+.-
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t--~~~l-e~vq~----wk~He~----E~Wta~f~~~~pnlvytGgDD~~l~~ 192 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET--EMVL-EKVQT----WKVHEF----EAWTAKFSDKEPNLVYTGGDDGSLSC 192 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc--eeee-eeccc----ccccce----eeeeeecccCCCceEEecCCCceEEE
Confidence 3445567778888877666666555442 1111 01111 344444 4555566543 367789999999999
Q ss_pred EECCC-Ce-E-EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEe-c-cCceeeeeecccccCccccccCccccCCCC
Q 000992 102 HSVDG-NA-T-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMT-H-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 102 w~~~~-~~-~-e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~-~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
||... +. + .....|..||.++.=|| ++..||+|+-|.+|.+|+ | -.+|+....+ .++
T Consensus 193 ~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-----------------~GG 255 (339)
T KOG0280|consen 193 WDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-----------------GGG 255 (339)
T ss_pred EEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-----------------ccc
Confidence 99872 22 2 22445788999998886 588999999999998885 2 2333332221 268
Q ss_pred eEEEEEccCCc--eEEEeeccccccCCCCEEEEEECC--CCc---EEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 176 KSPISWRGDGK--YFATLSEFCNSSKLHKRLKVWERD--SGT---LQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 176 v~~isWspDG~--~lAsvss~d~~~~~d~~irVWd~~--~G~---l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
|++|.|+|--. .|| +.-++ -++|-+.+ -++ ...+...|+++...-.|..--..||+++.-
T Consensus 256 VWRi~~~p~~~~~lL~-~CMh~-------G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLA-ACMHN-------GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred eEEEEecchhhhHHHH-HHHhc-------CceEEEecccccchheeeeccccccceeeccccccccceeeeeecc
Confidence 99999999654 333 22221 23333332 233 333445677777777885555689998763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=68.72 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=90.4
Q ss_pred cChHHHHHHHHhccC------hhHHHHHHHHhcCCcchhhHHHHHHhcCCh-----hhhcccHHHHhhCHHHHHHHHHHc
Q 000992 889 ADSEAVYEAALGLYD------LNLAAIVALNSQRDPKEFLPYLQELESMPP-----LLMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 889 ~d~~~Ly~~ALg~yD------~~lal~vAq~sq~DpkeYlpfL~~L~~l~~-----~~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
.++...++.|..+-- +.++++-|++ -||-+|..+++.-.++++ .+.|+.|.-.|++|++|+.-|-++
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 366677887776543 2345555554 578889999999999843 489999999999999999999887
Q ss_pred CCCc-------HHHHHHHHHHHhcChHHHHhhc-CCc---HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHH
Q 000992 958 GDSY-------HADCLNLMKKYAQLFPLGLKLI-TDP---AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK 1021 (1196)
Q Consensus 958 g~~~-------~~~ale~~~~~~~ly~~AL~L~-~d~---~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~k 1021 (1196)
-.=. .+.|.-.++.| -+..+...| .-. ....+++..+|+-|.++++|.+|.++|..|-..+.
T Consensus 421 i~L~pe~~~~~iQl~~a~Yr~~--k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 421 ISLDPENAYAYIQLCCALYRQH--KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hhcChhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 4222 24444444443 244455544 111 12346788999999999999999999999866544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.45 Score=53.07 Aligned_cols=207 Identities=10% Similarity=0.079 Sum_probs=102.4
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+.+..|+|.||+..|++|.. ..+.|-..+. +|+++....-. .+-...|++--+|.++.+..+ .+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er------~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQD------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER------DQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEET------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT------TTEE
T ss_pred CCccccEEcCCCCeEEEEEC------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC------CCcE
Confidence 34789999998665553653 4578888898 89988765321 244589999888877665533 3567
Q ss_pred EEEeC--CC--eeE---EEEEeccC--CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC---CEEEEEEE---EE-
Q 000992 253 VFYER--NG--LER---SSFDINEQ--IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN---NHWYLKYE---IR- 316 (1196)
Q Consensus 253 ~~~e~--nG--l~~---~~f~l~~~--~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n---~~wylkq~---l~- 316 (1196)
.+++. ++ ... ..+.+..+ +...+..|+|+|.++.|.++-... -.+|+.+.. ........ +.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~~~~~~~ 165 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSDDQDLDD 165 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeecccccccc
Confidence 77664 11 111 22333322 234589999999988888887666 466777653 11111000 00
Q ss_pred --EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 317 --YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 317 --~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
....+...+.+||..+. |.+.+...... ... -.+|+.+...++....-..+ ..+ ...
T Consensus 166 ~~~~~~d~S~l~~~p~t~~-lliLS~es~~l---~~~-----------d~~G~~~~~~~L~~g~~gl~---~~~---~Qp 224 (248)
T PF06977_consen 166 DKLFVRDLSGLSYDPRTGH-LLILSDESRLL---LEL-----------DRQGRVVSSLSLDRGFHGLS---KDI---PQP 224 (248)
T ss_dssp HT--SS---EEEEETTTTE-EEEEETTTTEE---EEE------------TT--EEEEEE-STTGGG-S---S------SE
T ss_pred ccceeccccceEEcCCCCe-EEEEECCCCeE---EEE-----------CCCCCEEEEEEeCCcccCcc---ccc---CCc
Confidence 00112366888998876 45555433221 011 12466566666654211000 000 123
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVV 420 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw 420 (1196)
-.|||.++| + |-+.+.-+.+..|
T Consensus 225 EGIa~d~~G--~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDG--N-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT-----EEEEETTTEEEEE
T ss_pred cEEEECCCC--C-EEEEcCCceEEEe
Confidence 578999998 4 4444455544443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.004 Score=74.57 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=60.8
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC 195 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d 195 (1196)
..+|.-+.|+|-=.++|+++.+|.|.+---.|.-+-.++.+..+ -..+++|+|||+.+| ++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~---------------v~~sL~W~~DGklla-Vg~-- 81 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN---------------VTASLCWRPDGKLLA-VGF-- 81 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc---------------cceeeeecCCCCEEE-EEe--
Confidence 45789999999999999999999888754445555555544332 125999999999999 887
Q ss_pred cccCCCCEEEEEECCCCcEEE
Q 000992 196 NSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 196 ~~~~~d~~irVWd~~~G~l~~ 216 (1196)
.|++|++-|.+.|..+.
T Consensus 82 ----kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 82 ----KDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ----cCCeEEEEEccCCCcee
Confidence 46999999997775543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.31 Score=58.17 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=126.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---CC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~---dG 97 (1196)
.....+.++++..+|.... ++.|...|. .+... +. . ...+..+..+++.|+++.+.++.. ++
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~--~~~~~---~~-------~--~~vG~~P~~~~~~~~~~~vYV~n~~~~~~ 140 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDT--ATNTV---LG-------S--IPVGLGPVGLAVDPDGKYVYVANAGNGNN 140 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcC--cccce---ee-------E--eeeccCCceEEECCCCCEEEEEecccCCc
Confidence 4567788999999998865 355777775 22221 11 1 111346789999999999888876 68
Q ss_pred cEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 98 LLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 98 ~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
+|.+.|..++++- -+|. .+ ..++++|||+.+..+. .+++|.+.+-....+.+ . .. ...+ +..
T Consensus 141 ~vsvid~~t~~~~~~~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~--~~--~~~~------~~~ 206 (381)
T COG3391 141 TVSVIDAATNKVTATIPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G--SV--GSLV------GVG 206 (381)
T ss_pred eEEEEeCCCCeEEEEEecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c--cc--cccc------ccC
Confidence 8888898886543 2332 33 8899999999766665 67788775532222221 0 00 0001 111
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
..-..+.|+|||+++- +.-.. ..++++.+.|..++.....-.+... ....++..|+|+.+-+.... ...|
T Consensus 207 ~~P~~i~v~~~g~~~y-V~~~~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-----~~~V 277 (381)
T COG3391 207 TGPAGIAVDPDGNRVY-VANDG---SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-----GGTV 277 (381)
T ss_pred CCCceEEECCCCCEEE-EEecc---CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-----CCeE
Confidence 2336899999999665 33211 1236888889878877765333333 45789999999998887553 2456
Q ss_pred EEEeCC
Q 000992 253 VFYERN 258 (1196)
Q Consensus 253 ~~~e~n 258 (1196)
.+.+..
T Consensus 278 ~vid~~ 283 (381)
T COG3391 278 SVIDGA 283 (381)
T ss_pred EEEeCC
Confidence 666643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.059 Score=65.74 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=51.3
Q ss_pred ChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHH
Q 000992 975 LFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEV 1049 (1196)
Q Consensus 975 ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~ 1049 (1196)
.+++|++|+ ..+.+....+...|.-+..+++|++|..+|. +|++.|. . .++.+.-.+
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q------~al~i~~------~------~~g~~~~~~ 366 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ------KALKIYL------D------APGEDNVNL 366 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH------HHHHHHH------h------hccccchHH
Confidence 355666665 4666777777777788888888888877776 3444432 0 111111134
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+...||.-+..+|+|.||.++|.+
T Consensus 367 a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 367 AKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45666677777777777777766655
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0001 Score=85.21 Aligned_cols=156 Identities=13% Similarity=0.056 Sum_probs=129.2
Q ss_pred hhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 933 PLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 933 ~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
.++--..++--+.+|++|.+++.+... .-+|++|..+. .|+.|+-+. .+|.++..+-.+|++.|+..+.+..+.
T Consensus 47 ~nlavaca~tiv~~YD~agq~~le~n~--tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl 122 (615)
T KOG2247|consen 47 HNLAVACANTIVIYYDKAGQVILELNP--TGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL 122 (615)
T ss_pred CceehhhhhhHHHhhhhhcceecccCC--chhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH
Confidence 356667888889999999999999965 69999999884 899999998 899999999999999999999999999
Q ss_pred HHHHhCCCH------HH--------HHHHHHHcC-CHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1011 TTYFCCSSL------EK--------AMKAYRASG-NWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1011 ~~y~~ag~~------~k--------Al~~y~~~g-~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..|++.+.. +. -.+.....| +.|+..++|..+. + ..+...++..|...+++.||+.+|..
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE-d----~vil~dcd~~L~v~~qegeta~ltev 197 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE-D----YVILCDCDNTLSVTTQEGETASLTEV 197 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc-c----eeeecCcHHHHHHhhhccceeeeeec
Confidence 999997532 11 113334444 6777777776542 2 34677899999999999999999999
Q ss_pred hcCCHHHHHHHHHHhcCHHHHHH
Q 000992 1076 YCGDVTNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1076 yl~d~~~Ai~~y~~~~~w~eA~r 1098 (1196)
.|.++.|--.|.+.+.|..|=.
T Consensus 198 -ggepdnm~~~y~k~n~w~kage 219 (615)
T KOG2247|consen 198 -GGEPDNMDFFYGKVNGWGKAGE 219 (615)
T ss_pred -cCccchhhhheeeeeccccccc
Confidence 9999999999999999998854
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.045 Score=67.96 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHhc-ChHHHHhhc-----CCcHHHHHHHHHHHHHHhc---ccCHHHHHHHHHhCCCHHHHHHHHHH----
Q 000992 962 HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSD---VKCFEDAATTYFCCSSLEKAMKAYRA---- 1028 (1196)
Q Consensus 962 ~~~ale~~~~~~~-ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~---~~~~~eAa~~y~~ag~~~kAl~~y~~---- 1028 (1196)
.+..++++..+-+ .|+.+-++- .+.+.++.+++..|..-.. .++..+++++|..+|+-.-....|+.
T Consensus 353 qe~Ll~~~~~~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~ 432 (631)
T PF12234_consen 353 QEELLSLVPPQIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWH 432 (631)
T ss_pred HHHHHHHhhhhccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcc
Confidence 5888888877623 699988764 6779999999999986555 47888999999999997766666763
Q ss_pred cCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHH-HhcCHHHHHHHHHhcCCc-
Q 000992 1029 SGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLI-DARDWEEALRVAFMHRRE- 1106 (1196)
Q Consensus 1029 ~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~-~~~~w~eA~rla~~~~~~- 1106 (1196)
.++=+.+--++. +.++++.+.-|.+=|=.|..++||..||..|+- +|+++.||+.++ +.+...=|+.+|..+...
T Consensus 433 ~~~~k~~~Fl~n--dF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLL-ag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~ 509 (631)
T PF12234_consen 433 KEQQKMAKFLSN--DFTEPRWRTAALKNAYALLSKHRYEYAAAFFLL-AGSLKDAVNVCLRQLNDPQLAIAIARLYEGDN 509 (631)
T ss_pred cccHHHHHHHhh--cCCChHHHHHHHHhHHHHHhcccHHHHHHHHHh-cccHHHHHHHHHHHccChhHHHHHHHHHcCCC
Confidence 333333334444 346778888899999999999999999999999 999999999999 569999999999887643
Q ss_pred -----hhHHH-HHHHH
Q 000992 1107 -----DLITK-VKHAS 1116 (1196)
Q Consensus 1107 -----dL~e~-v~~~l 1116 (1196)
++++. |.|..
T Consensus 510 gp~~~~ll~~~vLp~a 525 (631)
T PF12234_consen 510 GPVLKKLLEEHVLPEA 525 (631)
T ss_pred chHHHHHHHHhhhccc
Confidence 35555 55543
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0047 Score=81.02 Aligned_cols=187 Identities=10% Similarity=0.105 Sum_probs=128.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
..|..|.=+|-...-.+|+.||.|++|.-..+. + ...|. ..|..+.|+.+|.-..++.+||.+-+|...-.+..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~ 2286 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT 2286 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccCCccee
Confidence 356777778888888999999999998765432 2 24443 77999999999999999999999999875533332
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slaw 230 (1196)
... -|+.....+.|=+ ..+| .++.. ..++.+.+||.. .+..-.....|++..+.+++
T Consensus 2287 s~q----------------chnk~~~Df~Fi~--s~~~-tag~s---~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~ 2344 (2439)
T KOG1064|consen 2287 SWQ----------------CHNKALSDFRFIG--SLLA-TAGRS---SDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAY 2344 (2439)
T ss_pred ccc----------------cCCccccceeeee--hhhh-ccccC---CCCCcccchhcccCcccceeeeecCCCceEEEE
Confidence 222 2333334455544 4456 34433 357899999973 23333333568889999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
-|.-++|.||+++ +.|.+||.-- . .|+ +.-. . |. .-.++.+++..+ .++||+++..
T Consensus 2345 ~P~~qllisggr~------G~v~l~D~rq---r--ql~--h~~~--~--~~-~~~~f~~~ss~g---~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2345 APKHQLLISGGRK------GEVCLFDIRQ---R--QLR--HTFQ--A--LD-TREYFVTGSSEG---NIKIWRLSEF 2400 (2439)
T ss_pred cCcceEEEecCCc------CcEEEeehHH---H--HHH--HHhh--h--hh-hhheeeccCccc---ceEEEEcccc
Confidence 9999999999996 4699999421 1 111 1111 1 44 456778888888 8999999864
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.34 Score=56.13 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1023 MKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1023 l~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+++|...++|++....|.. .-+| -=++-+++.+.+.|...+|....-+ +.+ ++-+++|++.++|.+|..+|.+
T Consensus 215 i~aLa~~~~w~eL~~fa~s-kKsP----IGyepFv~~~~~~~~~~eA~~yI~k-~~~-~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 215 IKALAENKDWDELEKFAKS-KKSP----IGYEPFVEACLKYGNKKEASKYIPK-IPD-EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhcCCHHHHHHHHhC-CCCC----CChHHHHHHHHHCCCHHHHHHHHHh-CCh-HHHHHHHHHCCCHHHHHHHHHH
Confidence 3777888889988888853 2122 1145577888889999998876666 889 9999999999999999999999
Q ss_pred cCCchhHHHH
Q 000992 1103 HRREDLITKV 1112 (1196)
Q Consensus 1103 ~~~~dL~e~v 1112 (1196)
.+..+.+..|
T Consensus 288 ~kd~~~L~~i 297 (319)
T PF04840_consen 288 EKDIDLLKQI 297 (319)
T ss_pred cCCHHHHHHH
Confidence 9887777663
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.41 Score=57.65 Aligned_cols=188 Identities=16% Similarity=0.096 Sum_probs=96.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-------EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
+.|+++.|+.+ +.|++...||.++++|..+.. ++..+-.+..|.+..+..+| +|..++++.+.+-+ +++
T Consensus 81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~-n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVN-NID 156 (410)
T ss_pred CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEe-Ccc
Confidence 78999999985 666677899999999997654 22222223334444444455 55566677765543 222
Q ss_pred -eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 149 -LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 149 -~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
+.....+.... -..+.++.+........++.++...+ .... ...+.+-+....+. .. ..+.+..
T Consensus 157 ~~~~~~~~~~~p----~~~~~~~~~~~~~~i~~l~~~~~~~i-~~~~------g~~i~~i~~~~~~~---i~-~~~~i~~ 221 (410)
T PF04841_consen 157 EPVKLRRLPEIP----GLWTKFHWWPSWTVIPLLSSDRVVEI-LLAN------GETIYIIDENSFKQ---ID-SDGPIIK 221 (410)
T ss_pred ccchhhccccCC----CcccccccccccccceEeecCcceEE-EEec------CCEEEEEEcccccc---cc-CCCCeEE
Confidence 21101111100 00011111111111145666666555 2221 24455333312111 11 2457899
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~ 290 (1196)
++.||+|+.||.-..++ .+.+...+= ...-++.+. .......+.|--+..+++..
T Consensus 222 iavSpng~~iAl~t~~g------~l~v~ssDf~~~~~e~~~~--~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 222 IAVSPNGKFIALFTDSG------NLWVVSSDFSEKLCEFDTD--SKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred EEECCCCCEEEEEECCC------CEEEEECcccceeEEeecC--cCCCCcEEEEECCCcEEEEe
Confidence 99999999999988743 354444321 112233332 22356688898776555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.32 Score=66.54 Aligned_cols=19 Identities=11% Similarity=0.266 Sum_probs=13.7
Q ss_pred HHHHhcccHHHHHHHHHhc
Q 000992 714 VNALIQGRFRDALVMVRRH 732 (1196)
Q Consensus 714 ~~~l~~~~y~~Af~~~R~h 732 (1196)
+-++..++|.+|+.+.++-
T Consensus 189 ~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHccCCHHHHHHHHHHH
Confidence 3346778888888887763
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.043 Score=69.28 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=83.9
Q ss_pred cChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh---cCCCHH
Q 000992 974 QLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL---LKLGKD 1047 (1196)
Q Consensus 974 ~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~---l~~~~~ 1047 (1196)
++.++=+.|. .+++..+.|.+.-|+.++.+|++++|..+|..||+|+++++...+.. .+++..... ..-..+
T Consensus 395 G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~L--s~~l~~~~~~~~~~s~~~ 472 (613)
T PF04097_consen 395 GLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLL--SQVLSQPSSSSLSDSERE 472 (613)
T ss_dssp -HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHH--HHHHHCSSTSSSSSTTTT
T ss_pred ceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHcCccccccccchhh
Confidence 4455555554 46788999999999999999999999999999999999999986553 223321111 001235
Q ss_pred HHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q 000992 1048 EVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
++..++..+.+.+...+.. ..+...+.. |-++-++.+.|-++ +|++|+....+-+
T Consensus 473 ~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~-Ll~L~~ff~~~~~g-~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 473 RLIELAKEILERYKSNPHISSKVSRKNRETFQL-LLDLAEFFDLYHAG-QYEQALDIIEKLD 532 (613)
T ss_dssp SHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHH-HHHHHHHHHHHHTT--HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCcchHhhccHHHHHHHHH-HHHHHHHHHHHHcC-CHHHHHHHHHhCC
Confidence 6678888888888665443 233333333 66666766666554 7999998876643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.23 Score=55.78 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=88.0
Q ss_pred CEEEEEEccCCCEEEEEE--CCC-cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCceee
Q 000992 77 SITAFDYLMEKEALIVGT--SSG-LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLLY 151 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as--~dG-~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~~ 151 (1196)
.+.+.+.|+||+.+|... .++ .+..+...+....... ...+..-+|+|||...+...++....++. ..... .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~-~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG-E 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCCCEEEEEcCCCceEEEEecCCCcc-e
Confidence 689999999999998877 333 3444554443223222 23789999999999998888777666542 11111 1
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEE--CC-CCcEEEE------eccCC
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWE--RD-SGTLQAS------SELKA 222 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd--~~-~G~l~~~------~e~~~ 222 (1196)
...+... .....|..+.+||||..+|.+.. ++ +++.|.|=- ++ .|..... .....
T Consensus 102 ~~~v~~~------------~~~~~I~~l~vSpDG~RvA~v~~-~~---~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 102 PVEVDWP------------GLRGRITALRVSPDGTRVAVVVE-DG---GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred eEEeccc------------ccCCceEEEEECCCCcEEEEEEe-cC---CCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1111100 01116789999999999994332 21 235555432 21 4411111 11223
Q ss_pred CceeEEEEcCCCCeEEEEecC
Q 000992 223 FMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d 243 (1196)
..+.+++|.+++.+++.++..
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred CcceeeeecCCCEEEEEeCCC
Confidence 456899999999988776553
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.95 Score=51.05 Aligned_cols=228 Identities=19% Similarity=0.195 Sum_probs=129.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
+.+..++.|+++++++ ++.++. .......++. ....|..+...|+-+.|.+-+ ||.+.+++++.
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~--~~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDL--SDPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEe--cCCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 3466789999999888 888887 2222211221 112499999999988877654 69999999864
Q ss_pred CeE-E---------------EeeeecCcEEEEE---ECCCCCEEEEEeCCceEEEEecc-----C-ceeeeeecccccCc
Q 000992 107 NAT-E---------------VVGRVEGGVRFIS---PSPDGDLLGVTTGFGQILVMTHD-----W-DLLYENPLEELAEG 161 (1196)
Q Consensus 107 ~~~-e---------------~vg~~~~~I~~~a---wSPDg~~LA~~s~d~tV~l~~~~-----~-d~~~~~~l~~~~~~ 161 (1196)
-.. . .+.. ..++...+ -...+..|+.+... +|.++... | ....|..+.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk-~i~i~~~~~~~~~f~~~~ke~~lp----- 138 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKK-KILIYEWNDPRNSFSKLLKEISLP----- 138 (275)
T ss_pred hccccccccccccccccccccccc-cCCeeEEeeccccccceEEEEEECC-EEEEEEEECCcccccceeEEEEcC-----
Confidence 111 0 1111 23455444 33444556655554 77776422 2 333443332
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-----------eeEEEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----------GAVLEW 230 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-----------v~slaw 230 (1196)
+.+..++|. +..++ ++. .+.+.+.|..+|.........+.. ...+--
T Consensus 139 ------------~~~~~i~~~--~~~i~-v~~-------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (275)
T PF00780_consen 139 ------------DPPSSIAFL--GNKIC-VGT-------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ 196 (275)
T ss_pred ------------CCcEEEEEe--CCEEE-EEe-------CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE
Confidence 345899999 44466 554 256888888777766554321111 122222
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
-+++.++.+... .-.|.+.+|...+...+.-. ....++++ ...+|.....+ .|.+|++.++.
T Consensus 197 ~~~~e~Ll~~~~--------~g~fv~~~G~~~r~~~i~W~--~~p~~~~~--~~pyli~~~~~----~iEV~~~~~~~-- 258 (275)
T PF00780_consen 197 LSDNEFLLCYDN--------IGVFVNKNGEPSRKSTIQWS--SAPQSVAY--SSPYLIAFSSN----SIEVRSLETGE-- 258 (275)
T ss_pred eCCceEEEEecc--------eEEEEcCCCCcCcccEEEcC--CchhEEEE--ECCEEEEECCC----EEEEEECcCCc--
Confidence 244666665432 24466777765442223211 12445555 33466665554 59999999985
Q ss_pred EEEEEEE
Q 000992 311 LKYEIRY 317 (1196)
Q Consensus 311 lkq~l~~ 317 (1196)
+.|.+..
T Consensus 259 lvQ~i~~ 265 (275)
T PF00780_consen 259 LVQTIPL 265 (275)
T ss_pred EEEEEEC
Confidence 5666654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.86 Score=54.07 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
+++.+|+++.++.++.+|. .+++..|+.. ++. .+.+.-.. .+..+.+++.+|.|..||..+++..
T Consensus 104 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~~-----------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDA--EDGKELWRAK-LSS-----------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEEC--CCCcEeeeec-cCc-----------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 4678888888888999998 6777666543 111 11111011 2456777788999999999876542
Q ss_pred -EeeeecCcEE------EEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEc
Q 000992 111 -VVGRVEGGVR------FISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWR 182 (1196)
Q Consensus 111 -~vg~~~~~I~------~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWs 182 (1196)
.... ..... +... .+ ..+.+++.++.+.-++ ++++.+-+...........+ ........+...
T Consensus 169 W~~~~-~~~~~~~~~~~sp~~-~~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~-----~~~~~~~~~p~~- 239 (377)
T TIGR03300 169 WTYSR-VTPALTLRGSASPVI-AD-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL-----ERLVDVDGDPVV- 239 (377)
T ss_pred eEEcc-CCCceeecCCCCCEE-EC-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch-----hhhhccCCccEE-
Confidence 1111 11110 1111 12 3566666667776554 22222211111000000000 000000011111
Q ss_pred cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCee
Q 000992 183 GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLE 261 (1196)
Q Consensus 183 pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~ 261 (1196)
.+|..++ ++ .++.+..||..+|+.....+. ... ... ..+|..|..++.+ ..|..++. +|..
T Consensus 240 ~~~~vy~--~~------~~g~l~a~d~~tG~~~W~~~~-~~~-~~p--~~~~~~vyv~~~~------G~l~~~d~~tG~~ 301 (377)
T TIGR03300 240 DGGQVYA--VS------YQGRVAALDLRSGRVLWKRDA-SSY-QGP--AVDDNRLYVTDAD------GVVVALDRRSGSE 301 (377)
T ss_pred ECCEEEE--EE------cCCEEEEEECCCCcEEEeecc-CCc-cCc--eEeCCEEEEECCC------CeEEEEECCCCcE
Confidence 1454444 32 257899999999998876652 111 111 2345566555543 35777775 4543
Q ss_pred EEEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 262 RSSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 262 ~~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.-++ .+.. ....+.. ..+..|.+++.++ .|.+|+..++.
T Consensus 302 ~W~~~~~~~---~~~ssp~--i~g~~l~~~~~~G---~l~~~d~~tG~ 341 (377)
T TIGR03300 302 LWKNDELKY---RQLTAPA--VVGGYLVVGDFEG---YLHWLSREDGS 341 (377)
T ss_pred EEccccccC---CccccCE--EECCEEEEEeCCC---EEEEEECCCCC
Confidence 3222 1111 0111111 2466888888888 89999987653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.51 E-value=1.1 Score=53.97 Aligned_cols=51 Identities=16% Similarity=0.084 Sum_probs=37.8
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.|.+|+..|..+..+.--.+.|.++.|+.+ +.|+++..||++.+.+..++.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce
Confidence 499999999877533322378999999987 666678899999887644443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.14 Score=63.08 Aligned_cols=178 Identities=11% Similarity=0.043 Sum_probs=108.6
Q ss_pred EEEccCCCEEEEEE-CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeee
Q 000992 81 FDYLMEKEALIVGT-SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENP 154 (1196)
Q Consensus 81 v~~spd~~~La~as-~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~ 154 (1196)
+-++|||+.+...+ ..+.+..+|.++.++. .+- +++.-..+++||||+++.+.+.+ +++..++.
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~-Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a--------- 267 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVM-VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMA--------- 267 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEE-eCCCcccceECCCCCEEEEeccCcccCcceeeecc---------
Confidence 44577887664433 2356677888875542 111 23445678999999999888632 23322221
Q ss_pred cccccCccccccCccccCCCCeEEE------EEccCCceEEEeeccccccCCCCEEEEEECCC----C-cEEEEeccCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPI------SWRGDGKYFATLSEFCNSSKLHKRLKVWERDS----G-TLQASSELKAF 223 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~i------sWspDG~~lAsvss~d~~~~~d~~irVWd~~~----G-~l~~~~e~~~~ 223 (1196)
... +.+..+ .+.+||++.- ++ +.+|.|.|..+ | +..... ++..
T Consensus 268 -~e~---------------d~~vvfni~~iea~vkdGK~~~-V~--------gn~V~VID~~t~~~~~~~v~~yI-PVGK 321 (635)
T PRK02888 268 -AER---------------DWVVVFNIARIEEAVKAGKFKT-IG--------GSKVPVVDGRKAANAGSALTRYV-PVPK 321 (635)
T ss_pred -ccC---------------ceEEEEchHHHHHhhhCCCEEE-EC--------CCEEEEEECCccccCCcceEEEE-ECCC
Confidence 111 112223 3456898766 54 26899999866 3 333322 3444
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-------------EEEEEeccCCCCcEEEEEEccCCCeeEEE
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-------------RSSFDINEQIDSTVELLKWNCMSDLLAAV 290 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpDg~~LAs~ 290 (1196)
..+.+++||||+++.+++.. ..+|.+.+..-.. .++..+ ...-...+|.++|....+-
T Consensus 322 sPHGV~vSPDGkylyVankl-----S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytsl 392 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKL-----SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTL 392 (635)
T ss_pred CccceEECCCCCEEEEeCCC-----CCcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeE
Confidence 55899999999999888764 3577777753221 121111 1123468899999988887
Q ss_pred EccCCcceEEEEEecC
Q 000992 291 VRFEEYDSVKICFFSN 306 (1196)
Q Consensus 291 ~~d~~~~~V~lW~~~n 306 (1196)
.-|. .|--|++..
T Consensus 393 f~ds---qv~kwn~~~ 405 (635)
T PRK02888 393 FLDS---QIVKWNIEA 405 (635)
T ss_pred eecc---eeEEEehHH
Confidence 7787 788899764
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.38 E-value=5.1 Score=51.44 Aligned_cols=346 Identities=17% Similarity=0.113 Sum_probs=170.9
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee--ecCcEEEEEECCCCC------EEEEEeCCceEEEEec
Q 000992 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--VEGGVRFISPSPDGD------LLGVTTGFGQILVMTH 145 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDg~------~LA~~s~d~tV~l~~~ 145 (1196)
+.+.++...-+.+.-++++|+.++.+.......+.+..+.+ .+..|.|+.+||-|+ .+|+|..+..+.+.+.
T Consensus 486 ~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 486 PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 33455555566677788899888887776665443332222 357799999998643 7888888777766553
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEE--EEECCCCcEEEEeccCCC
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGTLQASSELKAF 223 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir--VWd~~~G~l~~~~e~~~~ 223 (1196)
.-|...-. +......-+ .-.+.--.+-+|+.||- |+. +++.+. +.|..+|++...-..+-|
T Consensus 566 ~pd~~~~~--~~~l~~~~i--------PRSIl~~~~e~d~~yLl-val------gdG~l~~fv~d~~tg~lsd~Kk~~lG 628 (1096)
T KOG1897|consen 566 LPDLILIT--HEQLSGEII--------PRSILLTTFEGDIHYLL-VAL------GDGALLYFVLDINTGQLSDRKKVTLG 628 (1096)
T ss_pred CCCcceee--eeccCCCcc--------chheeeEEeeccceEEE-EEc------CCceEEEEEEEcccceEccccccccC
Confidence 33322111 110000000 12345567778888988 775 456654 456657766543221112
Q ss_pred --ceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC--CCeeEEEEccCCcce
Q 000992 224 --MGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEYDS 298 (1196)
Q Consensus 224 --~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~~~ 298 (1196)
++.--.|+-.++ .+-+.++. +.+ +|--||..+-. .+..+.-..+ ..||.| ..-||++..+.
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdr------P~v-iY~~n~kLv~s-pls~kev~~~--c~f~s~a~~d~l~~~~~~~---- 694 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDR------PTV-IYSSNGKLVYS-PLSLKEVNHM--CPFNSDAYPDSLASANGGA---- 694 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCC------CEE-EEecCCcEEEe-ccchHHhhhh--cccccccCCceEEEecCCc----
Confidence 223334555443 44444443 344 46556654421 1111111112 234443 34677776664
Q ss_pred EEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+++-+++.-.-.-.+++... ..+..+.+++ ..+++.+.+..+.. +.-.+. .......+.|.|.++..+..+..-
T Consensus 695 l~i~tid~iqkl~irtvpl~-~~prrI~~q~-~sl~~~v~s~r~e~--~~~~~~-ee~~~s~l~vlD~nTf~vl~~hef- 768 (1096)
T KOG1897|consen 695 LTIGTIDEIQKLHIRTVPLG-ESPRRICYQE-SSLTFGVLSNRIES--SAEYYG-EEYEVSFLRVLDQNTFEVLSSHEF- 768 (1096)
T ss_pred eEEEEecchhhcceeeecCC-CChhheEecc-cceEEEEEeccccc--chhhcC-CcceEEEEEEecCCceeEEeeccc-
Confidence 88888775321112232221 1224566666 33444554432111 110000 011234577888888765543211
Q ss_pred CCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC----------CCcEEEEeCCCCCccccccCCceeeeeecccccCC
Q 000992 379 MPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS----------DGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFG 448 (1196)
Q Consensus 379 vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~----------dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (1196)
.++ +.-..|.++.|..|.+ ..+++|+. .|.|.++.......+ ++.... .-.+
T Consensus 769 ~~~-------E~~~Si~s~~~~~d~~-t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--------~~v~e~--~v~G 830 (1096)
T KOG1897|consen 769 ERN-------ETALSIISCKFTDDPN-TYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--------ELVAET--VVKG 830 (1096)
T ss_pred ccc-------ceeeeeeeeeecCCCc-eEEEEEEEeeccCCCCcccceEEEEEEecCCce--------eeeeee--eecc
Confidence 011 1112456677998852 77888763 355555555431111 111100 0012
Q ss_pred cEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 449 SVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 449 ~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+..+.-. +|++||.- ++++.++..+
T Consensus 831 av~aL~~f-ngkllA~I----n~~vrLye~t 856 (1096)
T KOG1897|consen 831 AVYALVEF-NGKLLAGI----NQSVRLYEWT 856 (1096)
T ss_pred ceeehhhh-CCeEEEec----CcEEEEEEcc
Confidence 34333333 56777632 2678888874
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=3.1 Score=48.96 Aligned_cols=207 Identities=12% Similarity=0.022 Sum_probs=99.4
Q ss_pred EEccCCCEEEEEEC---CCcEEEEECCCCeEEEeeeec-CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 82 DYLMEKEALIVGTS---SGLLLLHSVDGNATEVVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 82 ~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
.|.+||+.|+.+++ ...+.+.|+.++++.-+.... .......+||+++.|.......+|.-.+ -+...+..+-.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd--L~T~e~~~vy~ 119 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD--LDTLEERVVYE 119 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE--TTT--EEEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE--CCcCcEEEEEE
Confidence 46899998888776 445677888998876333222 1223577899999998887666664433 12222222221
Q ss_pred ccCccccccCccccCCCCeEEEEEc--cCCceEEEeeccccc----------------cCCCCEEEEEECCCCcEEEEec
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWR--GDGKYFATLSEFCNS----------------SKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWs--pDG~~lAsvss~d~~----------------~~~d~~irVWd~~~G~l~~~~e 219 (1196)
.+ ++.+-...|. .||..++.+- ...+ +...+.|.--|..+|+....++
T Consensus 120 ~p-------------~~~~g~gt~v~n~d~t~~~g~e-~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 120 VP-------------DDWKGYGTWVANSDCTKLVGIE-ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp ---------------TTEEEEEEEEE-TTSSEEEEEE-EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred CC-------------cccccccceeeCCCccEEEEEE-EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Confidence 11 2334457774 5677665221 1111 1122345555777998877776
Q ss_pred cCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 220 LKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 220 ~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
...+...+-||| |..+|+.|-..+-..-...|.+.+.+|.... .+..+ ....+.-=-|+|||..|.-.+....+.
T Consensus 186 -~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~--~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~ 262 (386)
T PF14583_consen 186 -DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK--KVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQ 262 (386)
T ss_dssp -ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E--ESS---TTEEEEEEEE-TTSS-EEEEEEETTT-
T ss_pred -cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce--eeecCCCCcccccccccCCCCEEEEEeecCCCC
Confidence 455667788888 6778888765432111234555566654322 22211 123455567999999888765532221
Q ss_pred --eEEEEEecCC
Q 000992 298 --SVKICFFSNN 307 (1196)
Q Consensus 298 --~V~lW~~~n~ 307 (1196)
.|.-.+..+.
T Consensus 263 ~~~i~~~d~~t~ 274 (386)
T PF14583_consen 263 DFWIAGYDPDTG 274 (386)
T ss_dssp -EEEEEE-TTT-
T ss_pred ceEEEeeCCCCC
Confidence 3444444443
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.7 Score=49.89 Aligned_cols=226 Identities=16% Similarity=0.155 Sum_probs=105.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|. +.+.-|.+...+.|++=. ..++ .|+...++.+ . + ..-...+|.|.. .+ ..++++.| +.+
T Consensus 18 ~l~dV~F~-d~~~G~~VG~~g~il~T~---DGG~-tW~~~~~~~~--~-~--~~~~l~~I~f~~-~~-g~ivG~~g-~ll 84 (302)
T PF14870_consen 18 PLLDVAFV-DPNHGWAVGAYGTILKTT---DGGK-TWQPVSLDLD--N-P--FDYHLNSISFDG-NE-GWIVGEPG-LLL 84 (302)
T ss_dssp -EEEEEES-SSS-EEEEETTTEEEEES---STTS-S-EE-----S----------EEEEEEEET-TE-EEEEEETT-EEE
T ss_pred ceEEEEEe-cCCEEEEEecCCEEEEEC---CCCc-cccccccCCC--c-c--ceeeEEEEEecC-Cc-eEEEcCCc-eEE
Confidence 77788887 666677777777666532 1222 2553221111 0 0 012467787754 33 44556666 445
Q ss_pred EECCCC-eEEEee---eecCcEEEEEECCCCCEEEEEeCCceEEEEe---ccCceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGN-ATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~-~~e~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~---~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
-..+++ ..+.+. ..++....+..-.++ ....++..|.|..-+ +.|..+..- ...
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~DgG~tW~~~~~~------------------~~g 145 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTTDGGKTWQAVVSE------------------TSG 145 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEESSTTSSEEEEE-S---------------------
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeCCCCCCeeEcccC------------------Ccc
Confidence 555554 333321 123333333333443 333455566664322 224332211 113
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+..+.-++||+|+| +++. -..++-|+.-...-..........+.++.|+|+|++...+ +. ..|.+
T Consensus 146 s~~~~~r~~dG~~va-vs~~------G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G------g~~~~ 211 (302)
T PF14870_consen 146 SINDITRSSDGRYVA-VSSR------GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG------GQIQF 211 (302)
T ss_dssp -EEEEEE-TTS-EEE-EETT------SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT------TEEEE
T ss_pred eeEeEEECCCCcEEE-EECc------ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC------cEEEE
Confidence 567888899999999 7762 2566778762222333333455678999999999987765 32 34555
Q ss_pred EeCCCeeEEEEEe---cc-CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 255 YERNGLERSSFDI---NE-QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 255 ~e~nGl~~~~f~l---~~-~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
=+ .+....+|.- +. .....+.+++|.+++++.|+++...
T Consensus 212 s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 212 SD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred cc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 44 1222222321 11 1123489999999999999887654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.2 Score=51.29 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=65.4
Q ss_pred CcEEEEECCCCeEEEeeeecCc-EEEEEECCCCCEEEEEeC----------CceEEEEe-ccCceeeeeecccccCcccc
Q 000992 97 GLLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTG----------FGQILVMT-HDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDg~~LA~~s~----------d~tV~l~~-~~~d~~~~~~l~~~~~~~~V 164 (1196)
+.|.++|.+++++ +|-++.+ .-.+..||||+.+.+++. ...|.+|+ .+..+..|+.+........+
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4688889888775 3433332 334778999999998752 23466775 45566677766543100000
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
.....++.|+||+++. +--.-| -..|-|-|...++......
T Consensus 95 ---------~~~~~~~ls~dgk~~~-V~N~TP----a~SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 95 ---------PYKNMFALSADGKFLY-VQNFTP----ATSVTVVDLAAKKVVGEID 135 (342)
T ss_dssp -----------GGGEEE-TTSSEEE-EEEESS----SEEEEEEETTTTEEEEEEE
T ss_pred ---------ccccceEEccCCcEEE-EEccCC----CCeEEEEECCCCceeeeec
Confidence 1224578999999987 554433 3678999997777766543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0084 Score=70.00 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=100.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC-------CeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG-------NATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~-------~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~ 147 (1196)
..|..++-..+.+.+++++.|.||++|+... ..+. +...|...|..+-|=.|-+.+|++ |+-|-+ |
T Consensus 736 ~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl----W 809 (1034)
T KOG4190|consen 736 EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL----W 809 (1034)
T ss_pred HHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCccee----e
Confidence 3566666666778899999999999999753 1233 556788999999999998888664 666766 5
Q ss_pred ceeeeeeccccc-CccccccCccccCCCCeEEEEE--ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-----c
Q 000992 148 DLLYENPLEELA-EGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-----E 219 (1196)
Q Consensus 148 d~~~~~~l~~~~-~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-----e 219 (1196)
||..+..+..-. ..++ +.+..|.- +-|...+. .+. +...+||++|...++-...+ .
T Consensus 810 DPFigr~Laq~~dapk~----------~a~~~ikcl~nv~~~ili-Agc-----saeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 810 DPFIGRLLAQMEDAPKE----------GAGGNIKCLENVDRHILI-AGC-----SAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred cccccchhHhhhcCccc----------CCCceeEecccCcchhee-eec-----cchhhheeeecccccceeeEEeccCC
Confidence 565554443211 1110 11111211 12333333 221 13579999998776543322 2
Q ss_pred cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeE
Q 000992 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLER 262 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~ 262 (1196)
+..+.+.+++-.|.|+.+|.+-.. ..|.+.+ |||...
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSn------Gci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSN------GCIAILDARNGKVI 911 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcC------CcEEEEecCCCcee
Confidence 345778999999999999987553 3566665 777543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.67 Score=55.42 Aligned_cols=256 Identities=16% Similarity=0.108 Sum_probs=123.7
Q ss_pred ceeEEeeecCCCEEEEEeCCC--cEEEEecccccc--cc----------------cceeecccc----ccccccCCC---
Q 000992 22 ILQFSALDIEQNRLFFASSAN--NIYSAQLSSFQN--ER----------------ASIKTAISA----EIEHIDLEP--- 74 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~--~i~~~~~~~~~~--~~----------------~~~~~~~~~----~l~~~~~~~--- 74 (1196)
.+....+-.++-++.++..++ .|++|..|.+.+ +. .-.+.++.. +++ ..|+|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~-~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK-EGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S-EEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc-cccCchhh
Confidence 355667778888888886655 577888762221 00 001111111 111 12344
Q ss_pred ----CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee---------ecCcEEEEEEC---CCC-----CEEEE
Q 000992 75 ----GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR---------VEGGVRFISPS---PDG-----DLLGV 133 (1196)
Q Consensus 75 ----~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~---------~~~~I~~~awS---PDg-----~~LA~ 133 (1196)
.+.|++++.| |--++|+|+++|.+.+.|+.+..+-.-.+ ....|+++.|+ .++ =.|..
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 4889999998 55699999999999999999865532222 22468899997 333 35888
Q ss_pred EeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE-EccC-Cc--------------------eEEEe
Q 000992 134 TTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS-WRGD-GK--------------------YFATL 191 (1196)
Q Consensus 134 ~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is-WspD-G~--------------------~lAsv 191 (1196)
||..|++.++...-+.-...... .+..+ ..+++.+..|. +..| |+ +++ +
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~------~~~~~--~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV-v 231 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQ------FAGAT--TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV-V 231 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEE------EEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE-E
T ss_pred EeCCCCEEEEEEecCCCCceEEE------Eeecc--ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE-E
Confidence 89999998764221000000000 00000 01122223332 2111 11 333 2
Q ss_pred eccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE-----cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE-EEE
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW-----MPSGANIAAVYDRKSENKCPSIVFYERNGLER-SSF 265 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw-----sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~-~~f 265 (1196)
.+ ++.+||+..-+++.........-....+.+ ...|..|++-..+ ..|++|..=+|+. .+.
T Consensus 232 vS-------e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~------G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 232 VS-------ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNN------GSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp E--------SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETT------SEEEEEETTT--EEEEE
T ss_pred Ec-------ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECC------CcEEEEECCCchHhhcc
Confidence 22 478999998677665544422223345555 3456666666553 4688887666543 233
Q ss_pred EeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 266 DINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 266 ~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.++.. +...+...+++++|+++.-.+... +++|++-
T Consensus 299 ~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE----~~l~sv~ 335 (395)
T PF08596_consen 299 SLPPPLDSRRLSSSSISRNGDIFYWTGPSE----IQLFSVW 335 (395)
T ss_dssp E-SS---HHHHTT-EE-TTS-EEEE-SSSE----EEEEEEE
T ss_pred cCCCccccccccccEECCCCCEEEEeCccc----EEEEEEE
Confidence 34311 112355677899999777665443 6666654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=2.7 Score=50.19 Aligned_cols=244 Identities=11% Similarity=0.027 Sum_probs=139.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCc-EEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANN-IYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~dG~I 99 (1196)
.....++++++..+|.....+. +...+. .... +.. .... .......++.++++. ..+....++.|
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~--~~n~----~~~----~~~~---g~~~p~~i~v~~~~~~vyv~~~~~~~v 98 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA--TSNT----VTQ----SLSV---GGVYPAGVAVNPAGNKVYVTTGDSNTV 98 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc--ccce----eee----eccC---CCccccceeeCCCCCeEEEecCCCCeE
Confidence 4567889999999999866443 333332 1111 110 0001 114567888999998 44555556899
Q ss_pred EEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC---CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.|..+.++.........-..++|+|||+.+-.+.. ++++.+.+..+..+... ... +.. .
T Consensus 99 ~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~v-------------G~~-P- 162 (381)
T COG3391 99 SVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPV-------------GNT-P- 162 (381)
T ss_pred EEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Eec-------------CCC-c-
Confidence 9999776544311112225678999999988777754 57776655444333322 111 111 1
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-e----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-S----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
..++++|||+.+. +.. ..+.+|-+.|. ++..... + -+....-..++++|+|+.+-....... ...
T Consensus 163 ~~~a~~p~g~~vy-v~~-----~~~~~v~vi~~-~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~---~~~ 232 (381)
T COG3391 163 TGVAVDPDGNKVY-VTN-----SDDNTVSVIDT-SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG---SNN 232 (381)
T ss_pred ceEEECCCCCeEE-EEe-----cCCCeEEEEeC-CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC---Cce
Confidence 6899999999776 443 14688999998 4443331 1 111122378999999997766544310 134
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
|...+...........+.... ....++.+|+|+..-+..... +.|.+-+..+.
T Consensus 233 v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~--~~V~vid~~~~ 285 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQG--GTVSVIDGATD 285 (381)
T ss_pred EEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCC--CeEEEEeCCCC
Confidence 555553321111111111111 355789999999888775542 26766666554
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.38 Score=59.02 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=81.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+...++|.-.+.+.++++.+.+|.++- ..+... + ++.+ + ..+.++....|++...+|.|+..|.|.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R--~~~~~~--~--~~~~--~----~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNR--HTGEMR--K--LKNE--G----ATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEec--Cchhhh--c--cccc--C----ccceEEEEEecchhHhhhhhcCCceEEe
Confidence 6777889999999999999998999887 455432 1 1111 0 1245777888999999999999999998
Q ss_pred EECCCCe---EEEe----eeecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 102 HSVDGNA---TEVV----GRVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 102 w~~~~~~---~e~v----g~~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
+-.+.+. ...+ ..|...|+|++||+||..|-+|...|+|.+
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 8765421 1112 225678999999999999999999999865
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=4 Score=48.10 Aligned_cols=184 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred EEECCCCCEEEEEeC-Cc--eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccccc
Q 000992 122 ISPSPDGDLLGVTTG-FG--QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSS 198 (1196)
Q Consensus 122 ~awSPDg~~LA~~s~-d~--tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~ 198 (1196)
=+|.+||+.|..++. || ++.+++. +.-.-.+|...+ . +......++|+++.+..+-.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL--~t~~i~QLTdg~------------g-~~~~g~~~s~~~~~~~Yv~~----- 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDL--ATGEITQLTDGP------------G-DNTFGGFLSPDDRALYYVKN----- 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEET--TT-EEEE---SS--------------B-TTT-EE-TTSSEEEEEET-----
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEc--ccCEEEECccCC------------C-CCccceEEecCCCeEEEEEC-----
Confidence 479999999888875 44 4444432 111112222211 0 11124677888887653332
Q ss_pred CCCCEEEEEECCCCcEEEEeccCCCceeEEEEc--CCCCeEEEEecCCC---C-------------CCCCeEEEEe-CCC
Q 000992 199 KLHKRLKVWERDSGTLQASSELKAFMGAVLEWM--PSGANIAAVYDRKS---E-------------NKCPSIVFYE-RNG 259 (1196)
Q Consensus 199 ~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws--PdG~~IAs~s~d~~---~-------------~~~~~V~~~e-~nG 259 (1196)
.+.++--|.++++.....+-.++++....|. .|+.+++....... . .....|.--+ +.|
T Consensus 101 --~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 101 --GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp --TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred --CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 3677777888887766667677888778885 45777765532110 0 0001111111 233
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceE--EEEEecC---CEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV--KICFFSN---NHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V--~lW~~~n---~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
...-.| ....++.-+.|||.-.-|++-|..++.+.| +||.++. ..|-+++. ..... ..=-|.|+|..
T Consensus 179 ~~~~v~----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~---~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 179 ERKVVF----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR---MEGESVGHEFWVPDGST 251 (386)
T ss_dssp -EEEEE----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTEEEEEEEE-TTSS-
T ss_pred ceeEEE----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC---CCCcccccccccCCCCE
Confidence 332221 123578889999988888888888877754 8898762 12222111 11112 44569999875
Q ss_pred e
Q 000992 334 Q 334 (1196)
Q Consensus 334 ~ 334 (1196)
.
T Consensus 252 i 252 (386)
T PF14583_consen 252 I 252 (386)
T ss_dssp E
T ss_pred E
Confidence 3
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.094 Score=63.11 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=77.6
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCC-----CCC
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSEN-----KCP 250 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~-----~~~ 250 (1196)
..+++||||+++| .+-..++ .+..+++|+|.++|+.+... ....+ .+++|.+||+.+.....+.... ...
T Consensus 127 ~~~~~Spdg~~la-~~~s~~G-~e~~~l~v~Dl~tg~~l~d~i~~~~~--~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 127 GGFSVSPDGKRLA-YSLSDGG-SEWYTLRVFDLETGKFLPDGIENPKF--SSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEETTTSSEEE-EEEEETT-SSEEEEEEEETTTTEEEEEEEEEEES--EEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeECCCCCEEE-EEecCCC-CceEEEEEEECCCCcCcCCccccccc--ceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4678999999999 5532221 34568999999999776532 22111 2399999999887776654211 145
Q ss_pred eEEEEeCCCee-EEEEEeccCCCCc-EEEEEEccCCCeeEEEEccCCc-ceEEEEEecC
Q 000992 251 SIVFYERNGLE-RSSFDINEQIDST-VELLKWNCMSDLLAAVVRFEEY-DSVKICFFSN 306 (1196)
Q Consensus 251 ~V~~~e~nGl~-~~~f~l~~~~~~~-V~~laWSpDg~~LAs~~~d~~~-~~V~lW~~~n 306 (1196)
.|.+|.+.... .....+..+.... ...+.+|+||++|.+.+..+.. ..|.+-+..+
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 67777764322 1123333333333 6789999999999987776633 3455555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.016 Score=69.59 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+.-+-|+|.=.+||.+..+ +.|.+...|- ++-++++.|+.....+++|.|||+.||+|..|| +|+|-|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~------gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG---~I~L~Dv 91 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEK------GELLIHRLNW--QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDG---TIRLHDV 91 (665)
T ss_pred eEEEEEcCccchhheeccC------CcEEEEEecc--ceeEeccCCCCccceeeeecCCCCEEEEEecCC---eEEEEEc
Confidence 4678899999999998874 4588887773 344566655544345999999999999999999 9999999
Q ss_pred cCCE
Q 000992 305 SNNH 308 (1196)
Q Consensus 305 ~n~~ 308 (1196)
...+
T Consensus 92 e~~~ 95 (665)
T KOG4640|consen 92 EKGG 95 (665)
T ss_pred cCCC
Confidence 8765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.011 Score=67.09 Aligned_cols=197 Identities=16% Similarity=0.068 Sum_probs=63.6
Q ss_pred hcccHHHHhhCHHHHHHHHHHc-CC-------CcHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcc
Q 000992 936 MRYTIDLRLQRFENALKHIVSM-GD-------SYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~-g~-------~~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
+-+.+.--.|+|++|++.|.+. .. +.....-++.... +.|+.|++.| .-+......+..++.+ ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccc
Confidence 3344544566677777776321 11 0011112233555 6677777666 1222234445555555 467
Q ss_pred cCHHHHHHHHHhC-------CCHHHHHHHHHHcCCHHHHHHHHhhcC-CC-HHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCC-------SSLEKAMKAYRASGNWSGVLTVAGLLK-LG-KDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~a-------g~~~kAl~~y~~~g~w~~al~la~~l~-~~-~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
+++++|..+++.+ .-+..++.+|...++|+++..+...+. .. ...-..+...+|..+.+.|++.+|.++|.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777666554 234567777788888887776554421 01 01123466778888888899999988887
Q ss_pred HhcC----CH---HHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1075 DYCG----DV---TNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKY 1137 (1196)
Q Consensus 1075 ~yl~----d~---~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~v~~~l~e~~~~~~e~l~~~~~~~~~~ 1137 (1196)
+-+. |. ..-+-++++.++.++|..+........ . -+|.+...+......|.+.++.+.-+
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~-~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--P-DDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---H-TSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--c-CHHHHHHHHHHHhccccccccccccc
Confidence 7543 22 233556778888888666554432110 1 14445556666666666666555433
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.3 Score=48.42 Aligned_cols=188 Identities=12% Similarity=0.041 Sum_probs=97.5
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCcc
Q 000992 84 LMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 84 spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
.+++..+.+++.+|.+..||..+|++.-.-...+.+.... ..++..+.+++.++.|..++ .+++.+-.......+ ..
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~ 110 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP-PA 110 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC-TC
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeecccccc-cc
Confidence 4467777788899999999998876531111112211111 33556667777777777776 555554442111111 00
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-----------eeEEEEc
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM-----------GAVLEWM 231 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~-----------v~slaws 231 (1196)
......+...+|..++ ++. .++.|..+|..+|+++......... ...+.+.
T Consensus 111 -----------~~~~~~~~~~~~~~~~-~~~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 111 -----------GVRSSSSPAVDGDRLY-VGT------SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp -----------STB--SEEEEETTEEE-EEE------TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred -----------ccccccCceEecCEEE-EEe------ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 0011122222255555 343 2478999998899998776442211 1222222
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+| .|..++.+. ..+.+ + .+|... +..+ . ..+..+ ..+++..|.+++.++ .|..||..+++
T Consensus 173 -~~-~v~~~~~~g-----~~~~~-d~~tg~~~--w~~~-~--~~~~~~-~~~~~~~l~~~~~~~---~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 -DG-RVYVSSGDG-----RVVAV-DLATGEKL--WSKP-I--SGIYSL-PSVDGGTLYVTSSDG---RLYALDLKTGK 233 (238)
T ss_dssp -TT-EEEEECCTS-----SEEEE-ETTTTEEE--EEEC-S--S-ECEC-EECCCTEEEEEETTT---EEEEEETTTTE
T ss_pred -CC-EEEEEcCCC-----eEEEE-ECCCCCEE--EEec-C--CCccCC-ceeeCCEEEEEeCCC---EEEEEECCCCC
Confidence 44 333333321 13444 4 344322 2222 1 112221 457788888888777 89999988764
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.1 Score=59.53 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=43.1
Q ss_pred hHHHHhhc---CCcHHHHHHHHHHHHHHhcc-cCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHH
Q 000992 976 FPLGLKLI---TDPAKMEQVLEAWADHLSDV-KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAK 1051 (1196)
Q Consensus 976 y~~AL~L~---~d~~~~~~i~~~~A~~L~~~-~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~ 1051 (1196)
|.+|+++| +++...-.++...|+.++.. +++++|..+|.+ |++.|...+. +.....
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~------A~~~y~~e~~--------------~~~a~~ 156 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQK------AAELYEQEGS--------------PHSAAE 156 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHH------HHHHHHHTT---------------HHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHCCC--------------hhhHHH
Confidence 44455555 34444445555555555555 455555444432 4444444442 223345
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+.+.++|.+|..+|.+
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 667778888888899999988877
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.072 Score=56.98 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..+|..+...+++++|...|.++
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4445566666666666666666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.17 Score=60.98 Aligned_cols=151 Identities=16% Similarity=0.188 Sum_probs=87.8
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC-----CeeEEEEccCCcce
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS-----DLLAAVVRFEEYDS 298 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg-----~~LAs~~~d~~~~~ 298 (1196)
.++.||| -||+.+.-..-.-. ...++|=|.+ ..|+| ..|..++|+|-+ .+||+.... .
T Consensus 21 PvhGlaW-TDGkqVvLT~L~l~---~gE~kfGds~--viGqF-------EhV~GlsW~P~~~~~~paLLAVQHkk----h 83 (671)
T PF15390_consen 21 PVHGLAW-TDGKQVVLTDLQLH---NGEPKFGDSK--VIGQF-------EHVHGLSWAPPCTADTPALLAVQHKK----H 83 (671)
T ss_pred cccceEe-cCCCEEEEEeeeee---CCccccCCcc--Eeecc-------ceeeeeeecCcccCCCCceEEEeccc----e
Confidence 4688999 57776543321100 1223332221 23444 259999999964 488887655 4
Q ss_pred EEEEEec-----CCEEEEEEEEEEecCCc---EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEE
Q 000992 299 VKICFFS-----NNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKIL 370 (1196)
Q Consensus 299 V~lW~~~-----n~~wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~ 370 (1196)
|.+|.+. ..+|...|+-......+ ....|||.++. |.+.+... +. ..+++. .|+++++
T Consensus 84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~i-L~VLT~~d-vS---V~~sV~---------~d~srVk 149 (671)
T PF15390_consen 84 VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAI-LTVLTARD-VS---VLPSVH---------CDSSRVK 149 (671)
T ss_pred EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCce-EEEEecCc-ee---Eeeeee---------eCCceEE
Confidence 9999975 45777777655432221 34789998876 67776422 11 112221 3555554
Q ss_pred EeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 371 VTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 371 lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
. .+.-.+.|.+..|.+|| ++|+++-.. .++.|-|+
T Consensus 150 a---------------Di~~~G~IhCACWT~DG--~RLVVAvGS-sLHSyiWd 184 (671)
T PF15390_consen 150 A---------------DIKTSGLIHCACWTKDG--QRLVVAVGS-SLHSYIWD 184 (671)
T ss_pred E---------------eccCCceEEEEEecCcC--CEEEEEeCC-eEEEEEec
Confidence 2 12345678999999999 777665433 55444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.09 Score=63.21 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=101.5
Q ss_pred cHHHHhhCHHHHHHHHHHcCCCcH---------------HHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcc
Q 000992 939 TIDLRLQRFENALKHIVSMGDSYH---------------ADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~~~---------------~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
.|-.-+++|++|+.-|.++=..+. .--+++..++ |++||++- | .....+...|.-|.+.
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~---Ykral~~~--P-~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT---YKRALELQ--P-NFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH---HHHHHhcC--C-CchHHHhHHHHHHHhc
Confidence 344556678888887776532211 2226667777 88888765 1 2344566777888999
Q ss_pred cCHHHHHHHHHhCC----CHHHHH----HHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCS----SLEKAM----KAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag----~~~kAl----~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
|+..||..+|.+|- ++..|+ .+|.+.|..++|..+=.. +...+ +..+-...||..++++|++.+|..+|.
T Consensus 334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999998763 445554 566677776666643322 11111 234455678888999999999888876
Q ss_pred Hh--------------------cCCHHHHHHHHHHhcCHHHHHH
Q 000992 1075 DY--------------------CGDVTNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1075 ~y--------------------l~d~~~Ai~~y~~~~~w~eA~r 1098 (1196)
+- .||+.+|+++|-++=+..-|+.
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 52 4889999999998877665554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.78 Score=56.88 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCEEEEEEccCCCEEEEEE---CCC-cEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-cc---
Q 000992 76 DSITAFDYLMEKEALIVGT---SSG-LLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HD--- 146 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as---~dG-~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~--- 146 (1196)
+....++++|||+.+.+.+ +.| ++...+...... -.+. -.+| .++.+||+..-+ .+++|.+.+ +.
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn--i~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~ 308 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN--IARI--EEAVKAGKFKTI--GGSKVPVVDGRKAAN 308 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc--hHHH--HHhhhCCCEEEE--CCCEEEEEECCcccc
Confidence 4567789999999998875 332 233333322110 0111 0011 145678887665 345677765 22
Q ss_pred --CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-----------
Q 000992 147 --WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT----------- 213 (1196)
Q Consensus 147 --~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~----------- 213 (1196)
+..+..++... ....+..||||+|+. +++ ....++-|.|....+
T Consensus 309 ~~~~v~~yIPVGK-----------------sPHGV~vSPDGkyly-Van-----klS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 309 AGSALTRYVPVPK-----------------NPHGVNTSPDGKYFI-ANG-----KLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CCcceEEEEECCC-----------------CccceEECCCCCEEE-EeC-----CCCCcEEEEEChhhhhhhhccCCccc
Confidence 33444444332 237899999999998 665 245789999985432
Q ss_pred -EEEEeccCCCce-eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 214 -LQASSELKAFMG-AVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 214 -l~~~~e~~~~~v-~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+...-+ -|+- -..+|.++|+...|---| ..|+-|+.
T Consensus 366 ~vvaeve--vGlGPLHTaFDg~G~aytslf~d------sqv~kwn~ 403 (635)
T PRK02888 366 AVVAEPE--LGLGPLHTAFDGRGNAYTTLFLD------SQIVKWNI 403 (635)
T ss_pred eEEEeec--cCCCcceEEECCCCCEEEeEeec------ceeEEEeh
Confidence 111111 1222 467999999866665543 45888984
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.2 Score=57.26 Aligned_cols=143 Identities=15% Similarity=0.037 Sum_probs=88.5
Q ss_pred HHhhCHHHHHHHHHHcC---CCcH----HHHHHHHHHHhcChHH----HHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000992 942 LRLQRFENALKHIVSMG---DSYH----ADCLNLMKKYAQLFPL----GLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g---~~~~----~~ale~~~~~~~ly~~----AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
..+|+|++|+..|.++- ++.. ..+. ++... +.|++ |+.+| .+|. ...++..+|..|..+++
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~-~l~~~-G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGL-AYYQS-GRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHc-CCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCC
Confidence 35788888888777642 2111 1121 22333 44443 45544 3444 34677788999999999
Q ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1006 FEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+++|...|.++-.. .....+|...|+|++|+....+.- ..++.. .....++..|...|++.+|...|.+.
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~-~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS-KWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988876321 112367778899999987665431 122222 23444677888999999999998875
Q ss_pred c--------CCHHHHHHHHH
Q 000992 1077 C--------GDVTNGISLLI 1088 (1196)
Q Consensus 1077 l--------~d~~~Ai~~y~ 1088 (1196)
+ .++++|+..|.
T Consensus 379 l~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 379 IQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHhChhhchhhHHHHHHHHH
Confidence 3 34455555444
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.64 Score=53.65 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=88.5
Q ss_pred EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEeccCce-eeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 110 EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHDWDL-LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~~d~-~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
+....+..-|..++|||..+ +|.+++-+++|++++..-.. +.... .+ ..+++.+|--|...
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~----------------a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI----------------AY-NQIWSCCWDLDERH 249 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee----------------cc-CCceeeeeccCCcc
Confidence 33333456799999999999 78888999999998632111 11111 11 46799999999987
Q ss_pred EEEeeccccccCCCCEEEEEECCC--CcEEE-EeccCCCceeEE------EEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDS--GTLQA-SSELKAFMGAVL------EWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~--G~l~~-~~e~~~~~v~sl------awsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+. -++ ..++.|-|||... |-+.. +.+-....+..| .-.|.|-+++.++. ...|||..
T Consensus 250 ~I-YaG-----l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--------~l~f~ei~ 315 (463)
T KOG1645|consen 250 VI-YAG-----LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--------VLQFYEIV 315 (463)
T ss_pred ee-EEe-----ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--------hhhhhhhh
Confidence 77 354 3578999999742 22111 000111122222 45667777777665 36678754
Q ss_pred CeeE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 259 GLER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 259 Gl~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+-.. --.+++....+...+.+..+-++.+.......
T Consensus 316 ~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs~ 352 (463)
T KOG1645|consen 316 FSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRSN 352 (463)
T ss_pred ccccCCCcccccCCCcceeeeeecCccceEEEEecCC
Confidence 3210 00112222234566666767666665555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.41 Score=58.58 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1045 GKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1045 ~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...++.....+++..+..+++|++|..+|.+
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4456666677777777777777777666554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0048 Score=73.85 Aligned_cols=202 Identities=14% Similarity=0.146 Sum_probs=125.3
Q ss_pred CCEEEEEEccCC--CEEEEEECCCcEEEEECCCC---eEEEeeeecCcEEEEEECC-CCCEEEEEe----CCceEEEEec
Q 000992 76 DSITAFDYLMEK--EALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSP-DGDLLGVTT----GFGQILVMTH 145 (1196)
Q Consensus 76 ~~v~~v~~spd~--~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSP-Dg~~LA~~s----~d~tV~l~~~ 145 (1196)
..+.+++++-+. ..|++|.++|.|.+-+.... -.|.+..+...-++.||+| |-+.||.+- .|-.+.+|+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd- 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD- 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee-
Confidence 456677766654 58999999999999776431 2455555677889999988 566777662 244566664
Q ss_pred cCceeeeeecccccCccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~ 224 (1196)
.-+....... ..+|.+ .-++..+++|--|-+.+. .|. ..|.+.++|. .-.+.+..+--...
T Consensus 136 ---i~s~ltvPke-------~~~fs~~~l~gqns~cwlrd~klvl-aGm------~sr~~~ifdl-Rqs~~~~~svnTk~ 197 (783)
T KOG1008|consen 136 ---INSLLTVPKE-------SPLFSSSTLDGQNSVCWLRDTKLVL-AGM------TSRSVHIFDL-RQSLDSVSSVNTKY 197 (783)
T ss_pred ---cccccCCCcc-------ccccccccccCccccccccCcchhh-ccc------ccchhhhhhh-hhhhhhhhhhhhhh
Confidence 2222111000 112222 234556899998888776 343 3588999997 33344433333445
Q ss_pred eeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEec--cCCCCcEEEEEEccCCC-eeEEEEccCCcce
Q 000992 225 GAVLEWMP-SGANIAAVYDRKSENKCPSIVFYER--NGLERSSFDIN--EQIDSTVELLKWNCMSD-LLAAVVRFEEYDS 298 (1196)
Q Consensus 225 v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l~--~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~ 298 (1196)
+..+..+| .++++|+..+ ..|.+||. |-...-...++ .+....+..++|.|-.. +||+...|. .+
T Consensus 198 vqG~tVdp~~~nY~cs~~d-------g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS--~t 268 (783)
T KOG1008|consen 198 VQGITVDPFSPNYFCSNSD-------GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS--IT 268 (783)
T ss_pred cccceecCCCCCceecccc-------CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCc--ce
Confidence 67788899 9999998875 36899982 21100000011 11123599999999775 567766665 48
Q ss_pred EEEEEec
Q 000992 299 VKICFFS 305 (1196)
Q Consensus 299 V~lW~~~ 305 (1196)
|+++++.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 8888864
|
|
| >PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.073 Score=60.78 Aligned_cols=119 Identities=14% Similarity=0.163 Sum_probs=77.7
Q ss_pred HHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCH------HHHHHHHHhCCCHHHHHHH
Q 000992 954 IVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF------EDAATTYFCCSSLEKAMKA 1025 (1196)
Q Consensus 954 l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~------~eAa~~y~~ag~~~kAl~~ 1025 (1196)
+.-.|+ +++|+++..++ ++|..||=|. .+++.++++..+|.+.-...+.. --...+-..+|+.+.+++.
T Consensus 5 ~Ll~G~--~~~Av~~al~~-~~wa~ALlLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 5 LLLVGN--REEAVELALDN-GLWAHALLLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHTT---HHHHHHHHHHT-T-HHHHHHHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHhCCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 444576 79999999999 9999999998 89999999999998887433332 2234445678999999887
Q ss_pred HHHc------------CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1026 YRAS------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1026 y~~~------------g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
+... ++|++.+.+.-... .+++. ..+..+++.|.+.|+..+|--+|+- +|
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~-~~~~~-~~l~~LGd~L~~~g~~~aA~iCYll-ag 143 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNR-TPEDS-QALCALGDRLWQRGRVEAAHICYLL-AG 143 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS----SS--TT--HHHHHHHTT-HHHHHHHHHH-TT
T ss_pred hccccccccccccchhcCHHHHHHHHHhCC-CcccH-HHHHHHHHHHHhCCCcchhHHHHhH-cC
Confidence 7654 47999997765532 33332 3556699999999987777777775 65
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.065 Score=71.06 Aligned_cols=186 Identities=11% Similarity=0.066 Sum_probs=120.2
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCcccccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
+....+..+++.--|...++-.-+.- +-.+|.++.=.|---.-.++++||.|++|-.. .+.+. .+++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~~k~-~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~--~~rt~-------- 2249 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVMIKH-PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV--CFRTA-------- 2249 (2439)
T ss_pred ccCCcccCCccccceecccceeEeec-ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE--Eeecc--------
Confidence 34444445555555655543332222 23568888888988999999999999987421 11111 11111
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
+. ..+..+.|+-+|.-|. ++- +|+.+-+|.. .-+.....+-|+...+...|=- .++|++++...
T Consensus 2250 ----g~-s~vtr~~f~~qGnk~~-i~d------~dg~l~l~q~-~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d- 2313 (2439)
T KOG1064|consen 2250 ----GN-SRVTRSRFNHQGNKFG-IVD------GDGDLSLWQA-SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD- 2313 (2439)
T ss_pred ----Cc-chhhhhhhcccCCcee-eec------cCCceeeccc-CCcceeccccCCccccceeeee--hhhhccccCCC-
Confidence 12 5678899999999888 653 6899999998 4443333344554445555544 67787776543
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
...|.+||.+-. +...-++.-|.+.+..+++-|.-++|.+|+.+| -|+|||+..
T Consensus 2314 --~~n~~lwDtl~~-~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G---~v~l~D~rq 2367 (2439)
T KOG1064|consen 2314 --NRNVCLWDTLLP-PMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG---EVCLFDIRQ 2367 (2439)
T ss_pred --CCcccchhcccC-cccceeeeecCCCceEEEEcCcceEEEecCCcC---cEEEeehHH
Confidence 467889985311 111112222456789999999999999999999 799999874
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.0048 Score=71.98 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=110.7
Q ss_pred cccccccCcccceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCE
Q 000992 11 PLNLELQSKDEILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA 89 (1196)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~ 89 (1196)
....++..|+ .+.+.+||.++|.+.+..+ .+.|+.|+++ ..+.. +|+.+... .-.-.+|++-+..
T Consensus 66 q~~le~n~tg-~aldm~wDkegdvlavlAek~~piylwd~n-~eytq-----qLE~gg~~-------s~sll~wsKg~~e 131 (615)
T KOG2247|consen 66 QVILELNPTG-KALDMAWDKEGDVLAVLAEKTGPIYLWDVN-SEYTQ-----QLESGGTS-------SKSLLAWSKGTPE 131 (615)
T ss_pred ceecccCCch-hHhhhhhccccchhhhhhhcCCCeeechhh-hhhHH-----HHhccCcc-------hHHHHhhccCCcc
Confidence 3444666667 8899999999999999866 5579999995 22222 12222111 1112789999999
Q ss_pred EEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc---C-----
Q 000992 90 LIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA---E----- 160 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~---~----- 160 (1196)
++++.-.|.+.|++..+.+ +...|.|...+.+.+|.|.+ +.+.++.|.++.+++...+.+......... .
T Consensus 132 l~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k 210 (615)
T KOG2247|consen 132 LVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGK 210 (615)
T ss_pred ccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheee
Confidence 9999999999999998754 45778788999999999985 566777777776665555444333222211 0
Q ss_pred -----------------------------ccccccCccccCCCCeEEEEEccCCceEE
Q 000992 161 -----------------------------GFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 161 -----------------------------~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
.+++ ..+|+...+.+.++.|-.||....
T Consensus 211 ~n~w~kage~m~sVvsgKkhl~yak~nE~D~pv-al~fq~~~gni~cyrwylDg~i~i 267 (615)
T KOG2247|consen 211 VNGWGKAGETMVSVVSGKKHLMYAKYNELDEPV-ALQFQEKYGNIHCYRWYLDGYILI 267 (615)
T ss_pred eeccccccceeeeeeecHHHHHHHhhcCCCCcc-ceEeeecCCceeEEEEeccccccc
Confidence 0011 236666777889999999997554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.55 E-value=4.7 Score=49.18 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=69.7
Q ss_pred ceeEEeeecC----CCEEEEEeCCCcEEEEeccc-ccccccceeecccccc-ccccCCCCCCEEEEEEccCCCEEEEEEC
Q 000992 22 ILQFSALDIE----QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEI-EHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~d~~----~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l-~~~~~~~~~~v~~v~~spd~~~La~as~ 95 (1196)
.+.+++|-+. .-.+..+.-.+.+..|++-. .+....+-+. ..-++ ..+|.+|.+.| |+|....|++-+.
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~s-QtcEi~e~~pvLpQGCV----WHPk~~iL~VLT~ 132 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMS-QTCEIREPFPVLPQGCV----WHPKKAILTVLTA 132 (671)
T ss_pred eeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceee-eeeeccCCcccCCCccc----ccCCCceEEEEec
Confidence 5777888765 44667776666688999841 1111111111 11112 23677776665 9999999998776
Q ss_pred CCcEEEEECC--CCeEE--EeeeecCcEEEEEECCCCCEEEEEeCC
Q 000992 96 SGLLLLHSVD--GNATE--VVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 96 dG~I~lw~~~--~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d 137 (1196)
...-.+.+.. +.++. +-+ .|-|.|++|.+||+.|++|-+.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~--~G~IhCACWT~DG~RLVVAvGS 176 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKT--SGLIHCACWTKDGQRLVVAVGS 176 (671)
T ss_pred CceeEeeeeeeCCceEEEeccC--CceEEEEEecCcCCEEEEEeCC
Confidence 6554556653 34443 322 5679999999999999998765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.35 Score=52.29 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=7.8
Q ss_pred hCHHHHHHHHHHcC
Q 000992 945 QRFENALKHIVSMG 958 (1196)
Q Consensus 945 ~ry~~Al~~l~~~g 958 (1196)
.+|++|..+|.+++
T Consensus 28 ~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 28 NKYEEAAELYERAA 41 (288)
T ss_pred cchHHHHHHHHHHH
Confidence 35666666655553
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.41 Score=53.56 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=81.9
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCC-eE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEE-EeccCceeee
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN-AT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILV-MTHDWDLLYE 152 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~-~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l-~~~~~d~~~~ 152 (1196)
+...+|.+-++.-+. .....+.+|..+=. .+ ++.|. ...|.++.||||-++|.+++....-++ ++..++.+..
T Consensus 45 ~f~~a~~k~~~~~~~-~~~r~~~~~l~~y~~~i~akpi~g~-~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt 122 (316)
T COG3204 45 VFPCAWFKAGQTNGL-DLSRYIARYLLEYRARIDAKPILGE-TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT 122 (316)
T ss_pred eeeeEEEeccccccc-cccchhhhccCCceEEEeccccccc-cccccceeeCCCcceEEEecCCCceEEEEecCCceEEE
Confidence 455566666653321 11122445554321 12 24454 556999999999999999988766555 4788999998
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEE------ecc--C-C
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQAS------SEL--K-A 222 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~------~e~--~-~ 222 (1196)
+++.... .--.|.|.++|+|.+ +. ..++++.++..+.+ ..... ++. + .
T Consensus 123 iPL~g~~---------------DpE~Ieyig~n~fvi-~d------ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N 180 (316)
T COG3204 123 IPLTGFS---------------DPETIEYIGGNQFVI-VD------ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKN 180 (316)
T ss_pred ecccccC---------------ChhHeEEecCCEEEE-Ee------hhcceEEEEEEcCCccEEeccceEEeccccCCCC
Confidence 8876432 124699999999877 32 14566666655322 11111 110 1 1
Q ss_pred CceeEEEEcCCCCeEEEEec
Q 000992 223 FMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~ 242 (1196)
..-..+||.|....+-.+..
T Consensus 181 ~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cCceeeecCCCCceEEEEEc
Confidence 12256777777665555443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.6 Score=46.01 Aligned_cols=190 Identities=18% Similarity=0.155 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
+++.+|+++.++.++.||. .+++..|+.. ++..+.. . -..++..+++++.+|.|..+|..+|++.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~--~tG~~~W~~~-~~~~~~~-------~-----~~~~~~~v~v~~~~~~l~~~d~~tG~~~ 99 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDA--KTGKVLWRFD-LPGPISG-------A-----PVVDGGRVYVGTSDGSLYALDAKTGKVL 99 (238)
T ss_dssp ETTEEEEEETTSEEEEEET--TTSEEEEEEE-CSSCGGS-------G-----EEEETTEEEEEETTSEEEEEETTTSCEE
T ss_pred eCCEEEEEcCCCEEEEEEC--CCCCEEEEee-ccccccc-------e-----eeecccccccccceeeeEecccCCccee
Confidence 6788999989999999999 6777766654 2222111 1 1344566777788888999998777653
Q ss_pred -E-eeee---cCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 111 -V-VGRV---EGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 111 -~-vg~~---~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
. .... .......+...+|+.+++++.++.|..++ ++++.+-...........++. ...+....+.+. +
T Consensus 100 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 173 (238)
T PF13360_consen 100 WSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-----SFSDINGSPVIS-D 173 (238)
T ss_dssp EEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE-----EETTEEEEEECC-T
T ss_pred eeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee-----eecccccceEEE-C
Confidence 2 1111 01223344444588898888888898887 556666555542211000000 000111233333 5
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
|..++ ++. ..+.+.+ |..+|+.... ....+ ... ...++|..|..++.+ ..|..|++.
T Consensus 174 ~~v~~-~~~------~g~~~~~-d~~tg~~~w~-~~~~~-~~~-~~~~~~~~l~~~~~~------~~l~~~d~~ 230 (238)
T PF13360_consen 174 GRVYV-SSG------DGRVVAV-DLATGEKLWS-KPISG-IYS-LPSVDGGTLYVTSSD------GRLYALDLK 230 (238)
T ss_dssp TEEEE-ECC------TSSEEEE-ETTTTEEEEE-ECSS--ECE-CEECCCTEEEEEETT------TEEEEEETT
T ss_pred CEEEE-EcC------CCeEEEE-ECCCCCEEEE-ecCCC-ccC-CceeeCCEEEEEeCC------CEEEEEECC
Confidence 55555 332 1236777 9989986652 22222 222 145788888877753 468888853
|
... |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.34 Score=60.38 Aligned_cols=106 Identities=20% Similarity=0.127 Sum_probs=74.4
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHH-HcCCHHHHHHHHhhcCCCHH-HHHHHHHH-HHHHHH
Q 000992 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYR-ASGNWSGVLTVAGLLKLGKD-EVAKLAQE-LCEELQ 1061 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~-~~g~w~~al~la~~l~~~~~-~~~~l~~~-la~~L~ 1061 (1196)
..++-+....+=|=-|.++++|+.||-.|..||..+.|++... +.+|.+-|+.+|+.+.-+.. ..+++.++ +-..-.
T Consensus 447 ~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~ 526 (631)
T PF12234_consen 447 TEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAI 526 (631)
T ss_pred CChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhcccc
Confidence 4556666777777889999999999999999999999998666 56889999999988753311 12223221 111112
Q ss_pred HcCChHHHHHHHHHhcCCHHHHHHHHHHhc
Q 000992 1062 ALGKPGEAAKIALDYCGDVTNGISLLIDAR 1091 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~ 1091 (1196)
+.|+.=.+.-+|-. +|++++|++.++..-
T Consensus 527 ~~~d~wl~s~~~W~-L~~~~~ai~~Li~~~ 555 (631)
T PF12234_consen 527 KEGDRWLASWAFWM-LGDYDEAIRALISPP 555 (631)
T ss_pred ccCCHHHHHHHHHh-cCCHHHHHHHHhcCc
Confidence 45666666667666 788888887777654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.32 Score=61.29 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=73.5
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHH----HHhhcC-CCHHHHHH
Q 000992 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLT----VAGLLK-LGKDEVAK 1051 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~----la~~l~-~~~~~~~~ 1051 (1196)
+|..+ ++|..+|+..++++++++|...|.+|=. +-+=...|.+.|+..+|+. +....+ .+=+...+
T Consensus 203 ~p~d~-e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 203 NPKDY-ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred CCCCh-HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 34333 5566666666666666666666655511 1122234444444444432 111111 12244567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC---------CHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG---------DVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~---------d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
++...+.++...++.+-|+++++.|+. |++-.+++|++.++|+.|++....
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~ 341 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVD 341 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 788888888888888889999888754 788999999999999999987654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.7 Score=48.53 Aligned_cols=234 Identities=10% Similarity=0.059 Sum_probs=118.8
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.-.+.+||+++..||.+.- .+.|..|+. ..+... + +. . .+.+.++...-++..|++ ...| +.
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~--~~g~~~--~------~~----~-p~~~~~~~~~d~~g~Lv~-~~~g-~~ 88 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDP--ETGKKR--V------FP----S-PGGFSSGALIDAGGRLIA-CEHG-VR 88 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecC--CcCceE--E------EE----C-CCCcccceeecCCCeEEE-Eccc-cE
Confidence 3455689999998888854 667999998 433321 1 11 1 123444444444444433 3444 55
Q ss_pred EEECCCCeE-E-E----eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee--eeccccc-CccccccCcccc
Q 000992 101 LHSVDGNAT-E-V----VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE--NPLEELA-EGFDVHEPELSS 171 (1196)
Q Consensus 101 lw~~~~~~~-e-~----vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~--~~l~~~~-~~~~Vs~tqf~~ 171 (1196)
+++.+++.. . + .+.-...-+.+...|||.+-+....... .........+ ..+.+.. ..+.+. .
T Consensus 89 ~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~---~~~~~~~~~G~lyr~~p~g~~~~l~~-----~ 160 (307)
T COG3386 89 LLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFD---LGKSEERPTGSLYRVDPDGGVVRLLD-----D 160 (307)
T ss_pred EEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccc---cCccccCCcceEEEEcCCCCEEEeec-----C
Confidence 667654332 2 1 1222344667888899887665443100 0000111111 0011000 000000 0
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEE-----EeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQA-----SSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~-----~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
+-..-..|+|||||+.|- ++- +..+.|.-|+.. +|.... ......|.-..++---+|++-+++-..
T Consensus 161 ~~~~~NGla~SpDg~tly-~aD-----T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~- 233 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLY-VAD-----TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG- 233 (307)
T ss_pred cEEecCceEECCCCCEEE-EEe-----CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC-
Confidence 001226799999998776 442 234566665542 232211 111123443445555666665433332
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEccC
Q 000992 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFE 294 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~d~ 294 (1196)
...|..|+++|...+++.++. ..+.+++| .|+.+.|-+.+...
T Consensus 234 ----g~~v~~~~pdG~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 234 ----GGRVVRFNPDGKLLGEIKLPV---KRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ----CceEEEECCCCcEEEEEECCC---CCCccceEeCCCcCEEEEEecCC
Confidence 247999999999888877763 24667777 46667666665543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.9 Score=49.55 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=57.5
Q ss_pred cChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHH--
Q 000992 974 QLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSG-- 1034 (1196)
Q Consensus 974 ~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~-- 1034 (1196)
.+|.+|---| .+.++.+..+++=.+..+.++.+=-|+..|+.++.. +||...|.++|.-+-
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 3444444333 445555555555555666666666666666555432 455566666664211
Q ss_pred -HHHHHhhc--CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHH
Q 000992 1035 -VLTVAGLL--KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1035 -al~la~~l--~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~r 1098 (1196)
|+.-|.++ +..|++--.++.+-+..+++.++-..|-++|-+ +-..|++++.|.||-.
T Consensus 112 maleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk-------~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK-------CSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH-------hhhHhhhhHHhhHHHH
Confidence 11111110 123344344555555555555555555444333 3455667777777643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.2 Score=50.56 Aligned_cols=235 Identities=15% Similarity=0.065 Sum_probs=131.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEEC-CCCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe--ccCcee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSV-DGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT--HDWDLL 150 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~-~~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~--~~~d~~ 150 (1196)
+.|++....|.-+.+.+++.|.++++|-. +.++. . +.-....++.+++++++-..|..+-..|++.-.. .+|+..
T Consensus 25 d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm 104 (404)
T KOG1409|consen 25 DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM 104 (404)
T ss_pred hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc
Confidence 45677777788888999999999999954 44432 2 3333467899999999999999999999885443 233332
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC-CCCcEEEEeccCCCceeEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER-DSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~-~~G~l~~~~e~~~~~v~sla 229 (1196)
+.... +..|...+..+-|+---+.+. +.+.| ..+ .|.- +.|.-+ |...-.+
T Consensus 105 ~~~r~-------------~~~h~~~v~~~if~~~~e~V~-s~~~d------k~~-~~hc~e~~~~l-------g~Y~~~~ 156 (404)
T KOG1409|consen 105 TFLKD-------------YLAHQARVSAIVFSLTHEWVL-STGKD------KQF-AWHCTESGNRL-------GGYNFET 156 (404)
T ss_pred chhhh-------------hhhhhcceeeEEecCCceeEE-Eeccc------cce-EEEeeccCCcc-------cceEeec
Confidence 22111 114556778888888888777 55543 222 3432 112110 0111112
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+--+-..++.....+......++.=++.+++.. +.-..++.+.+..++|-|--.+|-++..|. .|-.|++....-
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~--i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~---~vi~wdigg~~g 231 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQL--ITTFNGHTGEVTCLKWDPGQRLLFSGASDH---SVIMWDIGGRKG 231 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCce--EEEEcCcccceEEEEEcCCCcEEEeccccC---ceEEEeccCCcc
Confidence 222222222222211101122222234444321 111134567899999999999999999998 899999875331
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
...++.++.+. ....|+.+..++|.....+|.+.
T Consensus 232 -~~~el~gh~~k-V~~l~~~~~t~~l~S~~edg~i~ 265 (404)
T KOG1409|consen 232 -TAYELQGHNDK-VQALSYAQHTRQLISCGEDGGIV 265 (404)
T ss_pred -eeeeeccchhh-hhhhhhhhhheeeeeccCCCeEE
Confidence 22355554322 22223333334444444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.9 Score=54.70 Aligned_cols=157 Identities=12% Similarity=0.042 Sum_probs=94.6
Q ss_pred HHhhCHHHHHHHHHHcCCCc---HHH----HHHHHHHHhcChHHHHhhc-----CCcHH---HHHHHHHHHHHHhcccCH
Q 000992 942 LRLQRFENALKHIVSMGDSY---HAD----CLNLMKKYAQLFPLGLKLI-----TDPAK---MEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g~~~---~~~----ale~~~~~~~ly~~AL~L~-----~d~~~---~~~i~~~~A~~L~~~~~~ 1006 (1196)
.-.|++++|+..|.++-... .+. .-.++... +.+++|+++| .+|.. .......++.-+.+++++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~-g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL-HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 44577888888887764221 111 22355666 7788888876 23221 123344444556788888
Q ss_pred HHHHHHHHhCCCH-----------------------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000992 1007 EDAATTYFCCSSL-----------------------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~-----------------------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1196)
++|...+..+... .....++...|++++|+.+..+. ...|.. ..+...+|..+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n-~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN-QGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHh
Confidence 8888887766432 12335677778888888776652 212223 4577788888888
Q ss_pred cCChHHHHHHHHHhcC-CHH------HHHHHHHHhcCHHHHHHHH
Q 000992 1063 LGKPGEAAKIALDYCG-DVT------NGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-d~~------~Ai~~y~~~~~w~eA~rla 1100 (1196)
.|++.+|..++.+-+. +++ ....++.+.++|++|..+.
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888888766222 111 2223566666676665543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.30 E-value=7.4 Score=44.82 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=99.9
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++.+ .++..+++.+.+.|+. .. ..++ .|+...++.. +| +....|....++. ..+++..|.|..
T Consensus 64 l~~I~f--~~~~g~ivG~~g~ll~-T~--DgG~-tW~~v~l~~~------lp-gs~~~i~~l~~~~-~~l~~~~G~iy~- 128 (302)
T PF14870_consen 64 LNSISF--DGNEGWIVGEPGLLLH-TT--DGGK-TWERVPLSSK------LP-GSPFGITALGDGS-AELAGDRGAIYR- 128 (302)
T ss_dssp EEEEEE--ETTEEEEEEETTEEEE-ES--STTS-S-EE----TT-------S-S-EEEEEEEETTE-EEEEETT--EEE-
T ss_pred EEEEEe--cCCceEEEcCCceEEE-ec--CCCC-CcEEeecCCC------CC-CCeeEEEEcCCCc-EEEEcCCCcEEE-
Confidence 334444 3566777777664443 22 2222 2443222211 12 3445566666654 444566777643
Q ss_pred ECCCC-eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEE-EEec---cCceeeeeecccccCccccccCccccCCCCe
Q 000992 103 SVDGN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQIL-VMTH---DWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 103 ~~~~~-~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~-l~~~---~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
..+++ ..+ ++..-.+.|..+.-+|||+++|+++. |.+. -|+. .|.+... ....++
T Consensus 129 T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~-G~~~~s~~~G~~~w~~~~r------------------~~~~ri 189 (302)
T PF14870_consen 129 TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR-GNFYSSWDPGQTTWQPHNR------------------NSSRRI 189 (302)
T ss_dssp ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT-SSEEEEE-TT-SS-EEEE--------------------SSS-E
T ss_pred eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc-ccEEEEecCCCccceEEcc------------------Ccccee
Confidence 34443 333 23333567999999999998887755 4554 3331 1332211 112467
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEE-CCCCcEEEE-ecc--CCCc-eeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWE-RDSGTLQAS-SEL--KAFM-GAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd-~~~G~l~~~-~e~--~~~~-v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
..+.|+|||.... ++. .+.|+.=+ ...++.-.. ..+ ..+. +-+++|+|++...|+++.. .
T Consensus 190 q~~gf~~~~~lw~-~~~-------Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-------~ 254 (302)
T PF14870_consen 190 QSMGFSPDGNLWM-LAR-------GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-------T 254 (302)
T ss_dssp EEEEE-TTS-EEE-EET-------TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT--------
T ss_pred hhceecCCCCEEE-EeC-------CcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-------c
Confidence 8999999999866 442 25666655 212211111 111 2333 6899999999999988752 3
Q ss_pred EEEEeCCCeeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 252 IVFYERNGLERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+..-.-+|..=.. -+ .+-....+.|.|.++.+-+|.+ .++
T Consensus 255 l~~S~DgGktW~~--~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G 296 (302)
T PF14870_consen 255 LLVSTDGGKTWQK--DRVGENVPSNLYRIVFVNPDKGFVLG-QDG 296 (302)
T ss_dssp EEEESSTTSS-EE---GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred EEEeCCCCccceE--CccccCCCCceEEEEEcCCCceEEEC-CCc
Confidence 4332334432111 11 1113457888888776666665 444
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=60.16 Aligned_cols=191 Identities=14% Similarity=0.154 Sum_probs=128.9
Q ss_pred CCCEEEEEECCCcEEEEECCC-CeEEEee---eecCcEEEEEECCCCCEEEEEeC-CceEEEEe-ccCceeeeeeccccc
Q 000992 86 EKEALIVGTSSGLLLLHSVDG-NATEVVG---RVEGGVRFISPSPDGDLLGVTTG-FGQILVMT-HDWDLLYENPLEELA 159 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~-~~~e~vg---~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~-~~~d~~~~~~l~~~~ 159 (1196)
-.+.+.+||-||.++.|.... .-++.+- .|-+-|.+++-|-||-++.++.. |..+++.. .++|.++.+.+...+
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP 98 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP 98 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence 457888999999999998765 3344333 35567899999999999999877 99998865 557777666665444
Q ss_pred CccccccCccccCCCCeEEEEEc---cCCc-eEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCC
Q 000992 160 EGFDVHEPELSSSFSFKSPISWR---GDGK-YFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 160 ~~~~Vs~tqf~~~~~~v~~isWs---pDG~-~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPd 233 (1196)
-.+.|- +|-. .+| ++..+ .+.+.|+|...+ +....-.-|...+..+-++|.
T Consensus 99 -----------------g~a~wv~skGd~~s~IA-Vs~~~-----sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa 155 (558)
T KOG0882|consen 99 -----------------GFAEWVTSKGDKISLIA-VSLFK-----SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA 155 (558)
T ss_pred -----------------CceEEecCCCCeeeeEE-eeccc-----CCCcEEECCcCCcCccceecccccCceEEEEeecc
Confidence 122331 2222 455 66543 578899987322 223333457788999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCee---EE--EEEec-------cC-CCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLE---RS--SFDIN-------EQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~--~f~l~-------~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
|..+.|... .+.|.-|...|.. .+ .|.+. .+ .-....++.|||+|..++.-..|. .|+
T Consensus 156 ~Ds~vSiD~------~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr---kVR 226 (558)
T KOG0882|consen 156 GDSAVSIDI------SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR---KVR 226 (558)
T ss_pred ccceeeccc------cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc---EEE
Confidence 998776543 3568888765410 00 01111 00 113466899999999999999998 899
Q ss_pred EEEecCCE
Q 000992 301 ICFFSNNH 308 (1196)
Q Consensus 301 lW~~~n~~ 308 (1196)
++...+..
T Consensus 227 ~F~~KtGk 234 (558)
T KOG0882|consen 227 GFVFKTGK 234 (558)
T ss_pred EEEeccch
Confidence 99887654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.038 Score=62.75 Aligned_cols=80 Identities=14% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHHhcCCchhHHH--HHHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVAFMHRREDLITK--VKHASLECASS 1122 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d~-------~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~--v~~~l~e~~~~ 1122 (1196)
+...++-.|...|++.+|.+++..|.... ..-..+|...++.++|+....+.- .. =+|........
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~-----~~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL-----KLNPDDPLWLLAYAD 256 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH-----HHSTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc-----ccccccccccccccc
Confidence 44455666666666666555555542211 334455556666677665544311 11 24444455555
Q ss_pred HHHHHHHHHHHHHH
Q 000992 1123 LIGEYKEGLEKVGK 1136 (1196)
Q Consensus 1123 ~~e~l~~~~~~~~~ 1136 (1196)
.++......+...-
T Consensus 257 ~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 257 ALEQAGRKDEALRL 270 (280)
T ss_dssp HHT-----------
T ss_pred cccccccccccccc
Confidence 55555555554443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.33 Score=56.27 Aligned_cols=125 Identities=14% Similarity=0.118 Sum_probs=78.2
Q ss_pred cCCcchhhHHHHHHhcC-----ChhhhcccHHHHhhCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc
Q 000992 915 QRDPKEFLPYLQELESM-----PPLLMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI 983 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l-----~~~~~r~~Id~~L~ry~~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~ 983 (1196)
+.+-.|-|-|.=+|+.+ +-.+|-+.|...|..-..|+++|.+...- -..+.-+++... +.=.+|.+.+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqe-gdksqafq~~ 615 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQE-GDKSQAFQCH 615 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcc-cchhhhhhhh
Confidence 34444445555555554 33566667777777777777777766410 012333444444 4555566654
Q ss_pred C-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-------H-HHHHHHHHcCCHHHHHHHHhh
Q 000992 984 T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------E-KAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 984 ~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------~-kAl~~y~~~g~w~~al~la~~ 1041 (1196)
+ -|-.. +..+-+|.|+-+.+-|++|..+|++|.-. + ....|+++.|+|++|+.+-+.
T Consensus 616 ydsyryfp~ni-e~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 616 YDSYRYFPCNI-ETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhcccccCcch-HHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 2 23222 34556788888999999999999998533 2 344789999999999976654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.7 Score=47.41 Aligned_cols=145 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred EEccCCCEEE-EEECCCcEEEEECCCCeEEEeeeecCcEEE-EEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccc
Q 000992 82 DYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGRVEGGVRF-ISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEEL 158 (1196)
Q Consensus 82 ~~spd~~~La-~as~dG~I~lw~~~~~~~e~vg~~~~~I~~-~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~ 158 (1196)
.|.|+...|. +--..+.|.-|++.+++.+.... .+.+.+ +....+|.++++..+ +.++. ..+..++.. ...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-p~~~~~~~~~d~~g~Lv~~~~g---~~~~~~~~~~~~t~~--~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-PGGFSSGALIDAGGRLIACEHG---VRLLDPDTGGKITLL--AEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-CCCcccceeecCCCeEEEEccc---cEEEeccCCceeEEe--ccc
Confidence 4788877554 44566788889998877765554 334444 445555555544333 22222 111111111 111
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeec---c-ccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSE---F-CNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss---~-d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
...+.. ..-....-.|||.+-++..+ . .......+.+...+. .|........+-..-+.|+|||||
T Consensus 105 ~~~~~~---------~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 105 EDGLPL---------NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred cCCCCc---------CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 111111 23345677889987763222 0 111112234545555 566666554432334889999999
Q ss_pred CeEEEEec
Q 000992 235 ANIAAVYD 242 (1196)
Q Consensus 235 ~~IAs~s~ 242 (1196)
+.+-.+-.
T Consensus 175 ~tly~aDT 182 (307)
T COG3386 175 KTLYVADT 182 (307)
T ss_pred CEEEEEeC
Confidence 87776644
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.3 Score=53.29 Aligned_cols=58 Identities=7% Similarity=0.054 Sum_probs=42.1
Q ss_pred CEEEEEEccCCCEEEEEECC-C----cEEEEECCCCe--EEEeeeecCcEEEEEECCCCCEEEEEeCC
Q 000992 77 SITAFDYLMEKEALIVGTSS-G----LLLLHSVDGNA--TEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~d-G----~I~lw~~~~~~--~e~vg~~~~~I~~~awSPDg~~LA~~s~d 137 (1196)
.+..+.|||||+.|+.+.+. | +|.+.|..++. .+.+.... ..++|+|||+.|..++.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeCCCEEEEEEec
Confidence 47789999999999876433 3 47888888775 23332221 459999999999988764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.073 Score=38.51 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=29.2
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
....|...|.+++|+|+++.+++++.|+.+.+|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3445678899999999999999999999998873
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.048 Score=67.34 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=96.7
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
+.++...++++||++-++|+ +|+. .+.|++++..+|.-......|...+..|-=|-||.+..+.+.-. .
T Consensus 1098 rd~~~~fTc~afs~~~~hL~-vG~~------~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S----~ 1166 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLA-VGSH------AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS----S 1166 (1516)
T ss_pred hccccceeeEEeecCCceEE-eeec------cceEEEEEccCccccccccccccccccccccCCcceeeeecccc----C
Confidence 36778899999999999999 8975 47899999999987776677888888888888999776554432 3
Q ss_pred CeEEEEeCC---CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE---EEEEEEEEecCCcE
Q 000992 250 PSIVFYERN---GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW---YLKYEIRYLRRDGI 323 (1196)
Q Consensus 250 ~~V~~~e~n---Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w---ylkq~l~~~~~~~~ 323 (1196)
....+|+.. |.+|. | ..-..+.||...+.=|.|+... .+.|||+.+.+- |+...+.. +.+..
T Consensus 1167 PlsaLW~~~s~~~~~Hs-f-------~ed~~vkFsn~~q~r~~gt~~d---~a~~YDvqT~~~l~tylt~~~~~-~y~~n 1234 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHS-F-------DEDKAVKFSNSLQFRALGTEAD---DALLYDVQTCSPLQTYLTDTVTS-SYSNN 1234 (1516)
T ss_pred chHHHhccccccCcccc-c-------cccceeehhhhHHHHHhccccc---ceEEEecccCcHHHHhcCcchhh-hhhcc
Confidence 457788743 11221 2 1234688888877777766554 699999987764 22222211 11125
Q ss_pred EEEEccCCC
Q 000992 324 RFMWHPTKP 332 (1196)
Q Consensus 324 ~v~Wsp~~~ 332 (1196)
...|+|...
T Consensus 1235 ~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1235 LAHFSPCDT 1243 (1516)
T ss_pred ccccCCCcc
Confidence 678888775
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.16 Score=62.15 Aligned_cols=147 Identities=16% Similarity=0.095 Sum_probs=89.9
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
|.-=.+...++.||+|++.|-+.|++..+++.. .-| -++.+.....|++..++|.|+..|.|.+... .. .
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~-~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql-----~~-~ 108 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG-ATGITCVRSVSSVEYLVAAGTASGRVSVFQL-----NK-E 108 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccC-ccceEEEEEecchhHhhhhhcCCceEEeehh-----hc-c
Confidence 333445777899999999999999999987653 223 2566778899999999999999888865421 11 1
Q ss_pred cccccCccccccCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEE---eccCCCceeEEE
Q 000992 155 LEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQAS---SELKAFMGAVLE 229 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~---~e~~~~~v~sla 229 (1196)
+.+. -..++ .+. .|...|++++|++||..|- +|. ..++|-.-..++ -..... .-..++.|-.|.
T Consensus 109 ~p~~--~~~~t--~~d~~~~~rVTal~Ws~~~~k~y-sGD------~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD 177 (726)
T KOG3621|consen 109 LPRD--LDYVT--PCDKSHKCRVTALEWSKNGMKLY-SGD------SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLD 177 (726)
T ss_pred CCCc--ceeec--cccccCCceEEEEEecccccEEe-ecC------CCceEEEEEechhhhhccccceeeccCcceEEee
Confidence 1111 01111 011 3667899999999999988 553 345655444422 111111 112455566666
Q ss_pred EcCCCCeEEEEec
Q 000992 230 WMPSGANIAAVYD 242 (1196)
Q Consensus 230 wsPdG~~IAs~s~ 242 (1196)
..-.--+|++..+
T Consensus 178 ~~q~~LLVStl~r 190 (726)
T KOG3621|consen 178 YLQSYLLVSTLTR 190 (726)
T ss_pred cccceehHhhhhh
Confidence 6655445555443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=63.36 Aligned_cols=199 Identities=16% Similarity=0.171 Sum_probs=113.7
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCC-ceeEEEEcCCCC---eEEEEecCCCCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAF-MGAVLEWMPSGA---NIAAVYDRKSENK 248 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~-~v~slawsPdG~---~IAs~s~d~~~~~ 248 (1196)
.++..++-+|-|+-+| .++. --+-|-|.+ .+..-.-+...+. .|..+.|||.-. .|++.+..
T Consensus 25 ~~~~a~si~p~grdi~-lAsr-------~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~q----- 91 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIV-LASR-------QGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQ----- 91 (1081)
T ss_pred Ccccceeeccccchhh-hhhh-------cCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcc-----
Confidence 3456677778787777 4542 112333432 1221111111111 245677877654 45655543
Q ss_pred CCeEEEEeC--CCeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EE
Q 000992 249 CPSIVFYER--NGLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IR 324 (1196)
Q Consensus 249 ~~~V~~~e~--nGl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~ 324 (1196)
+-.+|+. ...+.-+|.+.++ ...|..+-|+|.- .+||+.+.|. .|..|++...|-+.-..-.. ... ..
T Consensus 92 --kaiiwnlA~ss~~aIef~lhgh-sraitd~n~~~q~pdVlatcsvdt---~vh~wd~rSp~~p~ys~~~w--~s~asq 163 (1081)
T KOG0309|consen 92 --KAIIWNLAKSSSNAIEFVLHGH-SRAITDINFNPQHPDVLATCSVDT---YVHAWDMRSPHRPFYSTSSW--RSAASQ 163 (1081)
T ss_pred --hhhhhhhhcCCccceEEEEecC-ccceeccccCCCCCcceeeccccc---cceeeeccCCCcceeeeecc--cccCce
Confidence 2334552 2223346767654 4569999999976 4899999998 89999998766432111000 011 33
Q ss_pred EEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCC
Q 000992 325 FMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKS 403 (1196)
Q Consensus 325 v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg 403 (1196)
|+|+-..|. +.+.+.|+.+.+|+++.+.. |.|. + .|-+.|+.++|..--
T Consensus 164 Vkwnyk~p~--------------------------vlasshg~~i~vwd~r~gs~--pl~s--~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 164 VKWNYKDPN--------------------------VLASSHGNDIFVWDLRKGST--PLCS--LKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred eeecccCcc--------------------------hhhhccCCceEEEeccCCCc--ceEE--ecccceeeehHHHhhhh
Confidence 444433332 33445667777777776543 3432 2 266677888887654
Q ss_pred CCCEEEEEECCCcEEEEeCCC
Q 000992 404 SKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 404 ~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
. ..+-+.+.||+|++|+.+.
T Consensus 214 ~-s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 214 Y-SEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred h-hhhcccCCCCceeeecccc
Confidence 2 4577778999999999864
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.64 Score=56.28 Aligned_cols=130 Identities=16% Similarity=0.127 Sum_probs=79.0
Q ss_pred hhCHHHHHHHHHHcCC----Cc--HHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 944 LQRFENALKHIVSMGD----SY--HADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~----~~--~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+.+|++|++.+..-+. .. |++|-=.+ +. +.-++||+.+ .-...-..+.+.+|+.|+..++|.+|..+|...
T Consensus 59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y-rl-nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 59 LDKYEDALKLIKKNGALLVINSFFFEKAYCEY-RL-NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred hhHHHHHHHHHHhcchhhhcchhhHHHHHHHH-Hc-ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5667777744443331 01 35553222 23 4566777777 212222558889999999999999999999998
Q ss_pred -CCHHHHHHHHHHcCCHHHHHH----HHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1017 -SSLEKAMKAYRASGNWSGVLT----VAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1017 -g~~~kAl~~y~~~g~w~~al~----la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+..+-.+.-++++.-..+-. +....+.-++..-+++...|-.+.+.|+|.+|.+++..
T Consensus 137 ~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~k 200 (652)
T KOG2376|consen 137 AKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEK 200 (652)
T ss_pred HhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444444432111111 12223333444567888888899999999999998776
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.29 Score=53.02 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=73.5
Q ss_pred ChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC----------CCHHHHHHHHHHcCCHHHHHHHHhh-c
Q 000992 975 LFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC----------SSLEKAMKAYRASGNWSGVLTVAGL-L 1042 (1196)
Q Consensus 975 ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a----------g~~~kAl~~y~~~g~w~~al~la~~-l 1042 (1196)
.|.+||.+- .+ -+|++.||-||..+++|++|-..|++| +-++.+--|..++|+...|...-++ +
T Consensus 91 ~YrkAlsl~p~~----GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 91 SYRKALSLAPNN----GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHHHHhcCCCc----cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 377788877 32 358899999999999999999999987 4567778888888886666643332 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC
Q 000992 1043 KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1196)
Q Consensus 1043 ~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d 1079 (1196)
..++.. ..-..++|..+.+.|+|.+|-..+.+|.+-
T Consensus 167 ~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 167 ELDPQF-PPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HhCcCC-ChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 222221 234567888888999999998888887543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=5 Score=53.61 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=97.8
Q ss_pred cHHHHhhCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHH
Q 000992 939 TIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~ 1007 (1196)
.+....|+|++|+.++.++... ++..+ ....+. +.++.|++++ .+|.. ..+...++..+...++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la-~all~~-Gd~~eA~~~l~qAL~l~P~~-~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAA-NTAQAA-GNGAARDRWLQQAEQRGLGD-NALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHC-CCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHhCCCHH
Confidence 3444689999999999866421 11111 223445 7777777776 23332 233334455555668899
Q ss_pred HHHHHHHhCCC-------HHHHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-
Q 000992 1008 DAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG- 1078 (1196)
Q Consensus 1008 eAa~~y~~ag~-------~~kAl~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~- 1078 (1196)
+|..+|.++-. +-....++.+.|++++|+....+ +..+++.. .....++..|...|++++|..+|.+-+.
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-NYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99888877642 12223566677788887754443 22233333 4677888888899999999888877432
Q ss_pred ---CH---HHHHHHHHHhcCHHHHHHHHH
Q 000992 1079 ---DV---TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1079 ---d~---~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
++ .....+|.+.+++++|.....
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 21 334456677777888776443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.33 Score=56.51 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=108.4
Q ss_pred EEECCCcEEEEECCCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc---eeeeeecccccCccccc
Q 000992 92 VGTSSGLLLLHSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVH 165 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d---~~~~~~l~~~~~~~~Vs 165 (1196)
+...+|.|.++|..+.-+ -..+-|..+|.++..+|-|....+....|.|.-|+...+ |-....+....+...+
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy- 195 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY- 195 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh-
Confidence 345789999999876443 367778899999999999999999998999999875420 0111111000000000
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
-|.-......++.++|||..+++.+ .|++||+++..+|.+....+..........=||-|-.
T Consensus 196 --~f~K~Kt~pts~Efsp~g~qistl~-------~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~--------- 257 (558)
T KOG0882|consen 196 --GFPKAKTEPTSFEFSPDGAQISTLN-------PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM--------- 257 (558)
T ss_pred --cccccccCccceEEccccCcccccC-------cccEEEEEEeccchhhhhhhccchhhhhccccccccc---------
Confidence 0001112347899999999998543 4799999999899888765433221111111121110
Q ss_pred CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 246 ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|. |-|.-.... .+..++...-..+.|...|.+|.-++--+ |++.++.+..
T Consensus 258 -----~Ve-lgRRmaver--elek~~~~~~~~~~fdes~~flly~t~~g----ikvin~~tn~ 308 (558)
T KOG0882|consen 258 -----HVE-LGRRMAVER--ELEKHGSTVGTNAVFDESGNFLLYGTILG----IKVINLDTNT 308 (558)
T ss_pred -----eee-hhhhhhHHh--hHhhhcCcccceeEEcCCCCEEEeeccee----EEEEEeecCe
Confidence 011 100000000 01111112234678889999999888877 8888877653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.17 Score=57.04 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=82.3
Q ss_pred CCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-----eEEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEec
Q 000992 72 LEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-----ATEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 72 ~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-----~~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~ 145 (1196)
|...+.|.+.+|.-.+..+.-|-.+|.|..+|+..+ ..-..=.|+..|+++..=. +++.|...+-+|+|++|+.
T Consensus 249 f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 249 FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 334567899999998999999999999999998653 1223334688899988766 7788888889999999863
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
-... ....+.+- ..||++.. -.-+--.+.-..+++++ .|+-.|||....|.++.+..
T Consensus 329 R~~K-~~~~V~qY--eGHvN~~a-------~l~~~v~~eeg~I~s~G-------dDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATK-CKKSVMQY--EGHVNLSA-------YLPAHVKEEEGSIFSVG-------DDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhh-cccceeee--eccccccc-------ccccccccccceEEEcc-------CeeEEEEEecccCceeeccC
Confidence 2111 10111111 12222000 00011122222344132 57999999999999998754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.8 Score=47.61 Aligned_cols=135 Identities=16% Similarity=0.243 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC-H-------HHHHHHHHHcCCHHHHHHHHhhc-CCCH----HHHHHHH
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSS-L-------EKAMKAYRASGNWSGVLTVAGLL-KLGK----DEVAKLA 1053 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~-~-------~kAl~~y~~~g~w~~al~la~~l-~~~~----~~~~~l~ 1053 (1196)
++..-.....|+-++..|-++.|..+|..+-+ . +.-+..|....+|++|+.+|.++ .+++ -++...+
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 45556677889999999999999999999866 3 33457788888999999999864 1222 2445566
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhcCCHHHHH-------HHHHHhcCHHHHHHHH---HhcCCchhHHHHHHHHHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKIALDYCGDVTNGI-------SLLIDARDWEEALRVA---FMHRREDLITKVKHASLECASS 1122 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai-------~~y~~~~~w~eA~rla---~~~~~~dL~e~v~~~l~e~~~~ 1122 (1196)
-++|.......++..|-.++.+-+.--+..+ +++..-++|..|++.- .+++ ++.+..|.+.|.+++.+
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn-~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN-PEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence 6777777777777777666655332111111 2344455666665432 2333 67766666777666544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.87 Score=57.15 Aligned_cols=110 Identities=10% Similarity=-0.090 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhCC----CHHH----HHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHH
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCCS----SLEK----AMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag----~~~k----Al~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~ 1062 (1196)
.+..+|.-+..++++++|...|+++= +... .-.+|...|++++|+....+ +.+++.... ....++..+..
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~ 418 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHh
Confidence 34455666667777777777776642 1111 12455666777777755443 122222211 11222333444
Q ss_pred cCChHHHHHHHHHhcC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000992 1063 LGKPGEAAKIALDYCG-----DVT---NGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl~-----d~~---~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.|+|++|...+.+.+. ++. ....+|...+++++|.....+
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6777777777766431 111 133455567777777776544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.53 Score=50.99 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHhcCCHHHHHHHHHHhcCH
Q 000992 1064 GKPGEAAKIALDYCGDVTNGISLLIDARDW 1093 (1196)
Q Consensus 1064 ~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w 1093 (1196)
+.|.+=|++|+.=+.|++.||..|-.+..|
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333344555555466777777777766666
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.72 Score=55.37 Aligned_cols=106 Identities=11% Similarity=-0.023 Sum_probs=63.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCC------cHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDS------YHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~------~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
..++.+...-|+|++|.+.+.+.... ++-.+-++.... +.++.|.+.+ .+|+......-..|+....+
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~-g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQR-GDEARANQHLERAAELADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC
Confidence 34455665568888888887765321 112223333556 7777777776 23332222222337777888
Q ss_pred cCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhh
Q 000992 1004 KCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~ 1041 (1196)
+++++|...+++.-+. .-..++|.+.|+|++|+.+...
T Consensus 167 g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 167 NENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888877776321 3455778888888888854443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.39 Score=56.49 Aligned_cols=105 Identities=12% Similarity=-0.005 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHhC---------------------CCHHHHHHHHHHcCC-----HHHHHHHHhh-
Q 000992 989 MEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYRASGN-----WSGVLTVAGL- 1041 (1196)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~~~g~-----w~~al~la~~- 1041 (1196)
..+-|...|.|+.-+++++.|.++|.+| ++...|+++|++|-+ +|.=..+.+.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY 408 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence 3356778899999999999999999887 455888999887742 2221222111
Q ss_pred --cCCCHHHHHHHHHHHHHHHH--HcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHH
Q 000992 1042 --LKLGKDEVAKLAQELCEELQ--ALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEA 1096 (1196)
Q Consensus 1042 --l~~~~~~~~~l~~~la~~L~--~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA 1096 (1196)
++|.- -.-.+-+-|..|. ..+....-+++|.+ ++..++||.||-++-...++
T Consensus 409 eim~Mh~--YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 409 EIMKMHF--YALYYFQKALELKPNDSRLWVALGECYEK-LNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHhcchH--HHHHHHHHHHhcCCCchHHHHHHHHHHHH-hccHHHHHHHHHHHHhcccc
Confidence 11110 0011222233332 12335566888888 99999999999887666655
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=7.8 Score=49.99 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=64.6
Q ss_pred cEEEEEECCCCCEEEEEeCC---ceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 118 GVRFISPSPDGDLLGVTTGF---GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d---~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
.+..+.|||||++||.+... ..-.++-++.+ ++..+. ..+ ++....++|++||+.|. .+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~--tg~~l~-----~~i--------~~~~~~~~w~~D~~~~~-y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE--TGNWYP-----ELL--------DNVEPSFVWANDSWTFY-YVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC--CCCCCC-----ccc--------cCcceEEEEeeCCCEEE-EEEe
Confidence 46778999999999998432 22222212211 111110 001 11125699999999887 4543
Q ss_pred ccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEe
Q 000992 195 CNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 195 d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+........|..+++.++ +-...++..++...-..|.+ ||+++...+.... ...+.++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~---~~~~~l~~ 253 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT---TSEVLLLD 253 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc---cccEEEEE
Confidence 321012356778888777 33334444444434344555 8887655444322 34566666
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.049 Score=67.28 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=117.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCce-EEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQ-ILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~t-V~l~~~~~d~~~~~ 153 (1196)
..-++++||.+.+.|++|+-.|.|+++|..+|..+ .+..|...|+-+.=|-||.++.+.+.-.. + +..|+.-...
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl---saLW~~~s~~ 1178 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL---SALWDASSTG 1178 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch---HHHhcccccc
Confidence 46789999999999999999999999999998765 66678899999999999998877654322 1 1234432211
Q ss_pred -ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCC---ceeEE
Q 000992 154 -PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAF---MGAVL 228 (1196)
Q Consensus 154 -~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~---~v~sl 228 (1196)
..|+. +.-.++.|+.--++-| +|+ .....-|||.+||..+.+ +.+..+ .-+..
T Consensus 1179 ~~~Hsf---------------~ed~~vkFsn~~q~r~-~gt------~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1179 GPRHSF---------------DEDKAVKFSNSLQFRA-LGT------EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred Cccccc---------------cccceeehhhhHHHHH-hcc------cccceEEEecccCcHHHHhcCcchhhhhhcccc
Confidence 11111 1224566766655555 554 235678999999876665 333322 23667
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe--eE--EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ER--SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--~~--~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.|||+-.+|.- +=++|+..-. .| .+|+..+ .=.|.|.|..+.+-+ .|||+
T Consensus 1237 ~FsP~D~LIln-----------dGvLWDvR~~~aIh~FD~ft~~~-------~G~FHP~g~eVIINS--------EIwD~ 1290 (1516)
T KOG1832|consen 1237 HFSPCDTLILN-----------DGVLWDVRIPEAIHRFDQFTDYG-------GGGFHPSGNEVIINS--------EIWDM 1290 (1516)
T ss_pred ccCCCcceEee-----------CceeeeeccHHHHhhhhhheecc-------cccccCCCceEEeec--------hhhhh
Confidence 89999888752 1236764211 01 1122111 124889998877643 47998
Q ss_pred cCCE
Q 000992 305 SNNH 308 (1196)
Q Consensus 305 ~n~~ 308 (1196)
.++|
T Consensus 1291 RTF~ 1294 (1516)
T KOG1832|consen 1291 RTFK 1294 (1516)
T ss_pred HHHH
Confidence 8876
|
|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.54 Score=59.32 Aligned_cols=145 Identities=24% Similarity=0.252 Sum_probs=86.3
Q ss_pred HHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-------------HHHHHHHHHcC-----
Q 000992 970 KKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------------EKAMKAYRASG----- 1030 (1196)
Q Consensus 970 ~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------------~kAl~~y~~~g----- 1030 (1196)
-+. +.|++||+++ ..|+.+..++..+||++...++|..||.+|...-.+ ++++..|..-+
T Consensus 369 Ld~-g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~~~~~L~~~L~KKL~~lt 447 (911)
T KOG2034|consen 369 LDK-GEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEINQERALRTFLDKKLDRLT 447 (911)
T ss_pred Hhc-chHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 444 6677777777 566777788888888888888888888877655322 23555444322
Q ss_pred CHHHH-----------HHHHhh--cC-CCHHH-------HHHH----------------HHHHHHHHHHcCChHHHHHHH
Q 000992 1031 NWSGV-----------LTVAGL--LK-LGKDE-------VAKL----------------AQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1031 ~w~~a-----------l~la~~--l~-~~~~~-------~~~l----------------~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
.|++. +.+.+. +. .+++- .... .+.+-+.+.+.|+..++..+-
T Consensus 448 ~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA 527 (911)
T KOG2034|consen 448 PEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFA 527 (911)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHH
Confidence 01111 111110 00 01110 0011 111223345677777777664
Q ss_pred HHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHH
Q 000992 1074 LDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHAS 1116 (1196)
Q Consensus 1074 ~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~v~~~l 1116 (1196)
-- .+|++.-|..+|+.++|++|+.+...+..++|.=...|.|
T Consensus 528 ~l-~~d~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~L 569 (911)
T KOG2034|consen 528 NL-IKDYEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPEL 569 (911)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHH
Confidence 44 7999999999999999999999887776666653344544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.12 Score=42.09 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=27.9
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
...|.+++|||...+||+++.+|.|.+.-.+|.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 356999999999999999999999988654444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.44 Score=57.42 Aligned_cols=100 Identities=7% Similarity=-0.023 Sum_probs=48.9
Q ss_pred CCcchhhHHHHHHhcC-Ch----hhhcccHHHHhhCHHHHHHHHHHcC----CCc--HHH-HHHHHHHHhcChHHHHhhc
Q 000992 916 RDPKEFLPYLQELESM-PP----LLMRYTIDLRLQRFENALKHIVSMG----DSY--HAD-CLNLMKKYAQLFPLGLKLI 983 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l-~~----~~~r~~Id~~L~ry~~Al~~l~~~g----~~~--~~~-ale~~~~~~~ly~~AL~L~ 983 (1196)
.|+..=...+.+..+. |. .+..+++....|++++|.++|.++- ... ... .-++.... +.|+.|++.+
T Consensus 98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~Al~~l 176 (409)
T TIGR00540 98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAARHGV 176 (409)
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHHHHHH
Confidence 4554434444444443 21 1333455555566666666666531 111 111 12333445 6666666555
Q ss_pred -----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC
Q 000992 984 -----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS 1017 (1196)
Q Consensus 984 -----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag 1017 (1196)
..|+ ...++..++.-+...++|++|..++...-
T Consensus 177 ~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 177 DKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2232 23456666666666666666665555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.17 Score=41.23 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA 108 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~ 108 (1196)
..|..++|+|..+.||+++.+|.|.++..+..+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 469999999999999999999999999986543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.89 Score=46.88 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 000992 1066 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKE 1129 (1196)
Q Consensus 1066 ~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~v~~~l~e~~~~~~e~l~~ 1129 (1196)
|.-|+.+|+. +|+++.|.+.+ +.|+..|..++ + ...+.+.++..++.|.|
T Consensus 106 ~~~ag~c~L~-lG~~~~A~~aF------~~Ai~~~~~~~--~-----~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 106 PWAAAECYLA-CDNVCYAIKAL------KAVVRICGEVS--E-----HQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHHHHHHH-cCCHHHHHHHH------HHHHHHhccCh--h-----HHHHHHHHHHHHHHhhc
Confidence 4457888888 89999888775 45566564333 1 33455556666555544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.1 Score=50.87 Aligned_cols=153 Identities=16% Similarity=0.104 Sum_probs=80.0
Q ss_pred CCEEEEEEccCCCEEEEEE-----------CCC-cEEEEECC-C-Ce---EEEeeeecCcEEEEEECCCCCEEEEEeCCc
Q 000992 76 DSITAFDYLMEKEALIVGT-----------SSG-LLLLHSVD-G-NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFG 138 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as-----------~dG-~I~lw~~~-~-~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~ 138 (1196)
..++.|+|.++|+..++-. ..| .|.+++.. + ++ .+++..--.....++|.||| ++++ .. .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~-~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TP-P 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CC-C
Confidence 4789999999999887643 234 78777642 2 33 23322212345889999999 5443 33 3
Q ss_pred eEEEE-eccCceee----eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc------c-c-----CCC
Q 000992 139 QILVM-THDWDLLY----ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN------S-S-----KLH 201 (1196)
Q Consensus 139 tV~l~-~~~~d~~~----~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~------~-~-----~~d 201 (1196)
.|..+ ..+.+-.. +.-+.... ..-..+......+.|.|||.+.++.++... . . ...
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~-------~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFG-------GQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccC-------CCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 45433 33332111 11111000 000001233568999999997764553100 0 0 011
Q ss_pred CEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 202 KRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 202 ~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+.|.-++++++++.....++.. ...++|+|+|+++++
T Consensus 164 g~i~r~~pdg~~~e~~a~G~rn-p~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 164 GGLFRYNPDGGKLRVVAHGFQN-PYGHSVDSWGDVFFC 200 (367)
T ss_pred ceEEEEecCCCeEEEEecCcCC-CccceECCCCCEEEE
Confidence 3455567744444433333332 267889999988765
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.7 Score=54.62 Aligned_cols=103 Identities=16% Similarity=0.080 Sum_probs=64.2
Q ss_pred cChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC-----C----HHHHHHHHHHcCCHHHHHHHH
Q 000992 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS-----S----LEKAMKAYRASGNWSGVLTVA 1039 (1196)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag-----~----~~kAl~~y~~~g~w~~al~la 1039 (1196)
+.|++|++.| .+|... ..+..+|.-+...|++++|...|+++- + +..+ .++...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~-~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISA-DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKL-WITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHH-HHHHhccCHHHHHHHH
Confidence 4455555554 233322 345667888888899999999998872 1 1222 2355577888888776
Q ss_pred hhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1040 GLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1040 ~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
.+.- ..+.........+|..+...|++++|...+.+...
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 5431 00011123455678888889999999998887543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.31 E-value=7.3 Score=44.46 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=100.7
Q ss_pred HHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCC--CcH----HHHHHHHHHHhcChHHHH
Q 000992 907 AAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD--SYH----ADCLNLMKKYAQLFPLGL 980 (1196)
Q Consensus 907 al~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~--~~~----~~ale~~~~~~~ly~~AL 980 (1196)
|+.|=|.--.-|. ++|=|++..+-+.-|.|.. -|=|+.|...|...-+ +.. ...+..+..- +.|++|+
T Consensus 88 AIRiHQ~L~~spd--lT~~qr~lAl~qL~~Dym~---aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~t-reW~KAI 161 (389)
T COG2956 88 AIRIHQTLLESPD--LTFEQRLLALQQLGRDYMA---AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQAT-REWEKAI 161 (389)
T ss_pred HHHHHHHHhcCCC--CchHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHh-hHHHHHH
Confidence 3444444434554 6777777766555555554 3668888888876643 222 3346677888 9999999
Q ss_pred hhc-----CCc----HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-HHHH-------HHHHHcCCHHHHHHHHh-hc
Q 000992 981 KLI-----TDP----AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-EKAM-------KAYRASGNWSGVLTVAG-LL 1042 (1196)
Q Consensus 981 ~L~-----~d~----~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-~kAl-------~~y~~~g~w~~al~la~-~l 1042 (1196)
+.. -++ -+...++.++|+.+....+.+.|.....+|-.- .+.+ +.+...|+++.|+..-. .+
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 876 222 356788999999999999999987776655111 1111 23333445555553221 12
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1043 KLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1043 ~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
.-+++=+.+++..|.+.....|+.++....+.++
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2245555666777777777777877777776664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.12 Score=47.27 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=28.7
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1024 KAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1024 ~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.||.+.|+|++|+.+..+.+.++.. ......+|..+.+.|+|++|..+|.+
T Consensus 33 ~~~~~~~~y~~A~~~~~~~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQKLKLDPSN-PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTTHHHHHHHHHHCHTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 5566666666666666443222222 23444557777777777777777655
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.21 E-value=4.1 Score=47.56 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=60.3
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-c--------------CCCceeEEEEcCCCC-eEEEEe
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L--------------KAFMGAVLEWMPSGA-NIAAVY 241 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~--------------~~~~v~slawsPdG~-~IAs~s 241 (1196)
+|++.+||.+++ +.-.+........|+.++. .|+....+. | ...-..+++++|||+ +++..+
T Consensus 89 gi~~~~~g~~~i-s~E~~~~~~~~p~I~~~~~-~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 89 GIAVPPDGSFWI-SSEGGRTGGIPPRIRRFDL-DGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred HeEEecCCCEEE-EeCCccCCCCCCEEEEECC-CCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 466678888777 3311000001156777787 577755441 1 122347999999999 444443
Q ss_pred cCCCCCC-------CCeEEEEeCC----CeeEEEEEeccC------CCCcEEEEEEccCCCeeEE
Q 000992 242 DRKSENK-------CPSIVFYERN----GLERSSFDINEQ------IDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 242 ~d~~~~~-------~~~V~~~e~n----Gl~~~~f~l~~~------~~~~V~~laWSpDg~~LAs 289 (1196)
.--.++. ...++++.-+ |....+|..+.. ....|.++.|=||+++|+.
T Consensus 167 ~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 167 SPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 3211111 1125555432 433556665532 3457889999999986654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=93.11 E-value=24 Score=43.81 Aligned_cols=55 Identities=25% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHHHHhcCHHHHHHHHHhcCCc
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLLIDARDWEEALRVAFMHRRE 1106 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~~~Ai~~y~~~~~w~eA~rla~~~~~~ 1106 (1196)
+++..-|..|...|++.+|++.+.. +.. -..++..+.++++.++|..++....+.
T Consensus 229 ely~~KarilKh~G~~~~Aa~~~~~-Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 229 ELYMTKARILKHAGDLKEAAEAMDE-ARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-HHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 4555566666666666666665443 321 134556666666666666666655443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.037 Score=66.58 Aligned_cols=193 Identities=12% Similarity=0.122 Sum_probs=116.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC--CCCEEEEEEcc-CCCEEEEEE----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP--GDSITAFDYLM-EKEALIVGT---- 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~v~~v~~sp-d~~~La~as---- 94 (1196)
.|++.-++.+..++..++.++.|-.-.. -.+.. .++.+.| ...-++++|.+ |.+.||.|.
T Consensus 60 kcva~~y~~d~cIlavG~atG~I~l~s~--r~~hd-----------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 60 KCVASFYGNDRCILAVGSATGNISLLSV--RHPHD-----------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred eeehhhcCCchhhhhhccccCceEEeec--CCccc-----------ccceecccccccccccccccccHHHHHhhhhhhc
Confidence 5777778888888888888887766555 22111 1122233 24568889977 567888774
Q ss_pred CCCcEEEEECCCCe------EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCc
Q 000992 95 SSGLLLLHSVDGNA------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~------~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
.|-.+.|||..++. ....++...+..+++|--|.++|.+|.....+.+.+--|...+...+. .+
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk------ 196 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TK------ 196 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hh------
Confidence 34568999998751 122333456788999999999888888777776543223222211111 11
Q ss_pred cccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-C-CcEEEEe----ccCCCceeEEEEcCCCC-eEEEE
Q 000992 169 LSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-S-GTLQASS----ELKAFMGAVLEWMPSGA-NIAAV 240 (1196)
Q Consensus 169 f~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~-G~l~~~~----e~~~~~v~slawsPdG~-~IAs~ 240 (1196)
.+..+.-.| .+.||+ ..+ |+.|-+||.. . -.+..+. .+.......++|+|-.. ++|+.
T Consensus 197 ------~vqG~tVdp~~~nY~c-s~~-------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 197 ------YVQGITVDPFSPNYFC-SNS-------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred ------hcccceecCCCCCcee-ccc-------cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 123455555 667888 343 5789999941 1 1111111 11222468999999654 67888
Q ss_pred ecCCCCCCCCeEEEEe
Q 000992 241 YDRKSENKCPSIVFYE 256 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e 256 (1196)
+++ ..+|++++
T Consensus 263 ~Rd-----S~tIrlyd 273 (783)
T KOG1008|consen 263 SRD-----SITIRLYD 273 (783)
T ss_pred ccC-----cceEEEec
Confidence 887 35787776
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.5 Score=53.92 Aligned_cols=184 Identities=15% Similarity=0.085 Sum_probs=107.6
Q ss_pred CCcchhhHHHHHHhcCChhhhcc-----cHHHHhhCHHHHHHHHHHcCCC----cHHHH--HHHHHHHhcChHHHHhhc-
Q 000992 916 RDPKEFLPYLQELESMPPLLMRY-----TIDLRLQRFENALKHIVSMGDS----YHADC--LNLMKKYAQLFPLGLKLI- 983 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l~~~~~r~-----~Id~~L~ry~~Al~~l~~~g~~----~~~~a--le~~~~~~~ly~~AL~L~- 983 (1196)
.|..+-+..|+++-+..+.-... .+...+|++++|+.++.++-.. ..... -..+... +.|++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~-gdyd~Aiely~ 126 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE-KRWDQALALWQ 126 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 44444455555555554433222 5555679999999999998531 11222 1255677 8899999988
Q ss_pred ----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHH-----HHHHHH--cCCHHHHHHHHhhc-CCCHHHHHH
Q 000992 984 ----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKA-----MKAYRA--SGNWSGVLTVAGLL-KLGKDEVAK 1051 (1196)
Q Consensus 984 ----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kA-----l~~y~~--~g~w~~al~la~~l-~~~~~~~~~ 1051 (1196)
.+|+. ..++...|.-+...+++++|...+.++...... ...|.. .++..+|+...+++ ...|++ .+
T Consensus 127 kaL~~dP~n-~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n-~e 204 (822)
T PRK14574 127 SSLKKDPTN-PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS-EE 204 (822)
T ss_pred HHHhhCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC-HH
Confidence 46655 344445577777788888888888887432111 123333 23333355443332 112222 35
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
++.++...|...|-..-|.++..+|=+-+...-..-++...-.+-+|.+..
T Consensus 205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 677778888888888888888776544344444444555555555655543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=7 Score=44.08 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=98.1
Q ss_pred ceeEEeeecCCCEEEEEeCC-CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSA-NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++|++++++||++.+. ..|++.+. .++. +.++| |.+ -...-+|.|.-+|++.++-=.++++.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~---~Gdl---irtiP--L~g-----~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTK---EGDL---IRTIP--LTG-----FSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEec---CCce---EEEec--ccc-----cCChhHeEEecCCEEEEEehhcceEE
Confidence 68899999999999999764 46777655 3333 33333 222 23456789999988877777778777
Q ss_pred EEEC--CCCeE-----E-Eeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce-eeeeeccccc-CccccccC
Q 000992 101 LHSV--DGNAT-----E-VVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL-LYENPLEELA-EGFDVHEP 167 (1196)
Q Consensus 101 lw~~--~~~~~-----e-~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~-~~~~~l~~~~-~~~~Vs~t 167 (1196)
+... ++..+ + .+|. -..|-..+||+|+++.|..+-+-+-+.+......+ .-........ ...
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~----- 228 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR----- 228 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc-----
Confidence 7544 33221 1 1121 14678899999999999999877666554221111 0000100000 000
Q ss_pred ccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEE
Q 000992 168 ELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1196)
Q Consensus 168 qf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~ 217 (1196)
+|.- ..+.++.|.+. |..++ .|- +.|.+---|+ +|+....
T Consensus 229 ~~f~--~DvSgl~~~~~~~~LLV-LS~------ESr~l~Evd~-~G~~~~~ 269 (316)
T COG3204 229 DLFV--LDVSGLEFNAITNSLLV-LSD------ESRRLLEVDL-SGEVIEL 269 (316)
T ss_pred ceEe--eccccceecCCCCcEEE-Eec------CCceEEEEec-CCCeeee
Confidence 0000 23466777754 44555 442 4577777788 7775443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.8 Score=40.92 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|+++| ++|+.+.+.++-+..++......+|..+...|++++|.+.+.+
T Consensus 12 a~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 12 ARVYRELGRYDEALDYY------EKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHTT-HHHHHHHH------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555556666666665 3455554444422234455677788888888888888777665
|
... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.3 Score=55.83 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=109.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEG 161 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~ 161 (1196)
++..+..|+-...+.-+|..+.+.. .++ .++|.-|+- +++.|-.|...|+|.+-+ +.+.++.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~------- 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD------- 214 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc--CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee-------
Confidence 3466777776667777888875432 333 346777776 478999999999998854 3455554443
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccc--cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS--SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIA 238 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~--~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IA 238 (1196)
.|.+.+. .|.=.|+.|+|+|..... -.-|+-|+|||...-+.+.-..-+-+. .-+.|.|.-. .+|
T Consensus 215 ---------aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~ 282 (1118)
T KOG1275|consen 215 ---------AHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA 282 (1118)
T ss_pred ---------cccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence 3334343 355567888866641100 013556999998443322211111111 4566777643 344
Q ss_pred EEecCCCCCCCCeEEEEeCCCee---EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 239 AVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.++.- ....|-+..++. -+.+-. .+....+.++.+|++|+.||.+..++ .|.+|.-.
T Consensus 283 V~S~s------Gq~q~vd~~~lsNP~~~~~~v-~p~~s~i~~fDiSsn~~alafgd~~g---~v~~wa~~ 342 (1118)
T KOG1275|consen 283 VTSQS------GQFQFVDTATLSNPPAGVKMV-NPNGSGISAFDISSNGDALAFGDHEG---HVNLWADR 342 (1118)
T ss_pred EEecc------cceeeccccccCCCccceeEE-ccCCCcceeEEecCCCceEEEecccC---cEeeecCC
Confidence 44432 235555533221 111111 12334589999999999999999998 89999843
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.87 E-value=2 Score=49.92 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HhhCHHHHHHH---------------------------HHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHH
Q 000992 943 RLQRFENALKH---------------------------IVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQV 992 (1196)
Q Consensus 943 ~L~ry~~Al~~---------------------------l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i 992 (1196)
|||.|++|++. |.=.|. |++|+....+| |.+. +|.--.-..
T Consensus 67 yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~--fdeA~~cc~rh-------Ld~areLgDrv~e~RA 137 (639)
T KOG1130|consen 67 YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA--FDEALTCCFRH-------LDFARELGDRVLESRA 137 (639)
T ss_pred hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc--cchHHHHHHHH-------hHHHHHHhHHHhhhHH
Q ss_pred HHHHHHHHhcccC--------------------HHHHHHHHHhCCCHHHHH--------------HHHHHcCCHHHHHHH
Q 000992 993 LEAWADHLSDVKC--------------------FEDAATTYFCCSSLEKAM--------------KAYRASGNWSGVLTV 1038 (1196)
Q Consensus 993 ~~~~A~~L~~~~~--------------------~~eAa~~y~~ag~~~kAl--------------~~y~~~g~w~~al~l 1038 (1196)
+-.+|.-+..+++ ++.|+.+|+.--....++ ..|.-.|+++.|+.
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~- 216 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH- 216 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH-
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHH
Q 000992 1039 AGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASL 1117 (1196)
Q Consensus 1039 a~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~ 1117 (1196)
..+..-+++.+.++.-.+.+-|.--+.++.- +|+++.|++.|.+ ++.||.... +. |.....
T Consensus 217 ------~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~------tl~LAielg-----~r~vEAQsc 278 (639)
T KOG1130|consen 217 ------FHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKL------TLNLAIELG-----NRTVEAQSC 278 (639)
T ss_pred ------HHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHH------HHHHHHHhc-----chhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1118 ECASSLIGEYKEGLEKVGKYLTRYLAVRQ 1146 (1196)
Q Consensus 1118 e~~~~~~e~l~~~~~~~~~~~~Rl~~lR~ 1146 (1196)
=..+..+..++|....+.-|.+-|+.-|+
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=2.8 Score=50.35 Aligned_cols=158 Identities=12% Similarity=0.015 Sum_probs=75.7
Q ss_pred HHhhCHHHHHHHHHHcCCCcH--H-----HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 942 LRLQRFENALKHIVSMGDSYH--A-----DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g~~~~--~-----~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
...|++++|.++|.++.+... . .+-++.... +.|+.|++.+ .+|+ ...+....++-+...++|++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHH
Confidence 445666666666655432100 1 112344555 6666666655 2222 234444555555566666666
Q ss_pred HHHHHhCCCH-----HHHH----HHH-------HHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1010 ATTYFCCSSL-----EKAM----KAY-------RASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1010 a~~y~~ag~~-----~kAl----~~y-------~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
..++.+..+. +.+- .+| ....+.+.+..+...++....+..++...+|..+...|++.+|..++
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6555554321 1000 111 11112222233222221000011345666778888888888888887
Q ss_pred HHhcCC--HHHHHHHHH--HhcCHHHHHHHHH
Q 000992 1074 LDYCGD--VTNGISLLI--DARDWEEALRVAF 1101 (1196)
Q Consensus 1074 ~~yl~d--~~~Ai~~y~--~~~~w~eA~rla~ 1101 (1196)
.+-++. -+..+.+|. ..++.++|+..++
T Consensus 287 ~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 287 LDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 765431 233333443 4477777776664
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.63 E-value=2.5 Score=49.39 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=39.5
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEe----eeecCcEEEEEECCC----CCEEEEEe
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVV----GRVEGGVRFISPSPD----GDLLGVTT 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~v----g~~~~~I~~~awSPD----g~~LA~~s 135 (1196)
.+++|+|.|||+.++ +...|+|.+++.++.. +..+ ..-+.+...+++.|+ +.+-++-+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 589999999998876 4669999999965533 1111 122568999999996 55555555
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.66 Score=59.33 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=69.7
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcC---CCcHHHHHHH---HHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMG---DSYHADCLNL---MKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g---~~~~~~ale~---~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
+.-+.|-..+|||++|+.+|..+= +++...-+++ .++. +-+++|+..+ .+|+.. ......|.-|...
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~~p~~~-~~~~~~a~~l~~~ 167 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSGGSSSA-REILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHh
Confidence 334688889999999999988763 4433322333 3677 8899999877 455443 3444556666655
Q ss_pred cCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++|++|..+|+++- . ..+ +. .+....+|..|++.|+.++|...|.+
T Consensus 168 g~~~~A~~~y~~~~-------------------~---~~p-~~---~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 168 GQSEQADACFERLS-------------------R---QHP-EF---ENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred cchHHHHHHHHHHH-------------------h---cCC-Cc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555554432 1 211 11 23455677777777777777777665
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.88 Score=50.56 Aligned_cols=112 Identities=11% Similarity=0.107 Sum_probs=71.2
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--CCCceeEEEEcCCCCeEEEEecC------CC------
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--KAFMGAVLEWMPSGANIAAVYDR------KS------ 245 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--~~~~v~slawsPdG~~IAs~s~d------~~------ 245 (1196)
.|||||.+|- ++.+..+.+++.|=|||. +-.++.+.|- +.---+.+.|.+||++++.+... -+
T Consensus 120 vfs~dG~~LY--ATEndfd~~rGViGvYd~-r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDGRLLY--ATENDFDPNRGVIGVYDA-REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCCcEEE--eecCCCCCCCceEEEEec-ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 4999999986 332222356889999999 5556665552 22123789999999999887541 00
Q ss_pred CCCCCeEEEEe-CCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 246 ENKCPSIVFYE-RNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 246 ~~~~~~V~~~e-~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..-...+++.+ ..|....+-+|+. ....+|..++--+||++++.+-..+
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred hhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 11134566676 6666555445651 1235788888888888776654433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.12 Score=64.42 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=60.1
Q ss_pred cEEEEecccccccccceeeccccccccccCCC-C---CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCc
Q 000992 43 NIYSAQLSSFQNERASIKTAISAEIEHIDLEP-G---DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGG 118 (1196)
Q Consensus 43 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~ 118 (1196)
.+|.+|+ .+++.+.++. -++..| + ..|....|-+..-.+|.+-.+|+|.+.+.+.....++-+|..+
T Consensus 156 fVy~vd~--l~G~iq~~l~-------v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~ 226 (1283)
T KOG1916|consen 156 FVYDVDV--LQGEIQPQLE-------VTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQR 226 (1283)
T ss_pred heeehHh--hccccccceE-------EeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCC
Confidence 3556666 6776655542 122333 2 3455556666788999999999999966554222222124433
Q ss_pred EEE-----------EEECCCCCEEEEEeCCceEEEEe
Q 000992 119 VRF-----------ISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 119 I~~-----------~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
+.. ...||||+.+|.+..||.+..|.
T Consensus 227 ~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 227 VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred cccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 333 34799999999999999998774
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.67 Score=45.83 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+.+.+|...|+.++|+..|.++- . .+++.+........++..|...|++++|..++.+-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al------~----~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRAL------A----AGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH------H----cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56688899999999999996543 2 24455555667888999999999999999998773
|
|
| >KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.96 Score=57.20 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1196)
+....+...-|..+.+.|.|++|+++|..||+|++|++...+.- .+++..-..-...++.+..++..+.+.+...+-+
T Consensus 619 ~~~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~L--S~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~ 696 (835)
T KOG2168|consen 619 EDLQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLL--SQVLHSPTLGQSNKERLGDLALSMNDIYESNKGD 696 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHH--HHHHhhcccCCcchhhHHHHHHHHHHHHHhccCc
Confidence 35667888889999999999999999999999999988775543 2233211111224567778999999998765544
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1067 GEAAKIALD--YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1067 ~eAa~i~~~--yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+- ..+.. -+=|+-.+-+.|- .++|++|+++.+.
T Consensus 697 ~~~-~~~~t~~lLl~~~~~f~~y~-~~~~e~aL~~le~ 732 (835)
T KOG2168|consen 697 SAK-VVVKTLSLLLDLVSFFDLYH-NGEWEEALSILEH 732 (835)
T ss_pred chh-hHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHH
Confidence 332 11111 1345556666654 4579999998765
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=92.14 E-value=7.4 Score=47.30 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-------Ee-eeecCcEEEEEECCCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-------VV-GRVEGGVRFISPSPDG 128 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-------~v-g~~~~~I~~~awSPDg 128 (1196)
+.+++|+|.|||+.|++--..|.|++++..++... .+ ..-+++...++++||-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 46899999999987765444699999987654221 11 1126889999999995
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.1 Score=51.16 Aligned_cols=94 Identities=20% Similarity=0.360 Sum_probs=60.0
Q ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHhcCCHHHHHHH
Q 000992 1012 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP-----GEAAKIALDYCGDVTNGISL 1086 (1196)
Q Consensus 1012 ~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~-----~eAa~i~~~yl~d~~~Ai~~ 1086 (1196)
-+...|+.++|+++..+.++|-.||-||..+ +++...++..++...-...++. .-=..+|.=+.|+.+.+|+-
T Consensus 4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~--g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~ 81 (284)
T PF12931_consen 4 QLLLVGNREEAVELALDNGLWAHALLLASSL--GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDE 81 (284)
T ss_dssp HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHCCChHHHHHHHHhc--CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHH
Confidence 4677899999999999999999999999876 5666655555555444322332 11234555568999999988
Q ss_pred HHHh------------cCHHHHHHHHHhcCCch
Q 000992 1087 LIDA------------RDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1087 y~~~------------~~w~eA~rla~~~~~~d 1107 (1196)
++.. ++|.+.+.+.-.+..++
T Consensus 82 l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~ 114 (284)
T PF12931_consen 82 LVPNSAAPPLEGEWDLDNWRETLAIILSNRTPE 114 (284)
T ss_dssp HHH-----HHHHHHHHHSHHHHHHHHHHTS---
T ss_pred hccccccccccccchhcCHHHHHHHHHhCCCcc
Confidence 8765 48999998877765443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=92.12 E-value=6.2 Score=41.86 Aligned_cols=52 Identities=10% Similarity=-0.093 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.....++..+...|++.+|...+.+-+. + ...-..+|.+.++|++|.....+
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556678888889999999998877432 1 12334567778888888876554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.4 Score=34.36 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=29.2
Q ss_pred cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 213 TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 213 ~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+.......+...+.+++|.|+++++++++.+. .|.+|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~------~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDG------TIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCC------eEEEcC
Confidence 34445555777889999999999999998753 577774
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.8 Score=55.79 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
.+-.||.|+..+ .|..++.+|... .+.-.....+.|.+++||.||++|+.|..+| .|.+||+.+..- -
T Consensus 98 ~~~~ivi~Ts~g------hvl~~d~~~nL~-~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G---~V~v~D~~~~k~--l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHG------HVLLSDMTGNLG-PLHQNERVQGPVTSVAFNQDGSLLLAGLGDG---HVTVWDMHRAKI--L 165 (1206)
T ss_pred eeeeEEEEcCch------hhhhhhhhcccc-hhhcCCccCCcceeeEecCCCceeccccCCC---cEEEEEccCCcc--e
Confidence 345677777643 466676666321 1111122356899999999999999999999 899999988543 2
Q ss_pred EEEEEecC--Cc-EEEEEccCCCceEEEEecCCcE
Q 000992 313 YEIRYLRR--DG-IRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 313 q~l~~~~~--~~-~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
+.+..+.. .+ ..+.|..++. .+......|.+
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gsf 199 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGSF 199 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCCc-EEEEccCCCce
Confidence 34444332 22 6677887776 34444445543
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.4 Score=48.97 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=37.1
Q ss_pred EEccCCCEEEEEE-----CCCcEEEEECCCCeEEEee---eecCcEEEEEECCCCCEEEEEeC
Q 000992 82 DYLMEKEALIVGT-----SSGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 82 ~~spd~~~La~as-----~dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
.|||||+.|...- .-|-|-+||...+ ..-+| .|.-|-..+.|.+||++|+.+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 3899999987542 2366888998742 22222 22335567899999999999976
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=3.1 Score=55.54 Aligned_cols=19 Identities=5% Similarity=-0.148 Sum_probs=9.5
Q ss_pred cHHHHhhCHHHHHHHHHHc
Q 000992 939 TIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~ 957 (1196)
.+...+|++++|+.++.++
T Consensus 86 ~~yl~~g~~~~A~~~~~kA 104 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQ 104 (987)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 4444455555555555544
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.6 Score=52.89 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCEEEEEeCCCcEEEEeccc-ccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeE
Q 000992 32 QNRLFFASSANNIYSAQLSS-FQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~ 109 (1196)
++.|+.++-++.|+.+|+-. .++++ |.... +-....|++++.+. +++.|.+.+-+|+|+|||..-.++
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~-~~a~r---------lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNG-WCAQR---------LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCC-cceEE---------EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 56777788888899999831 12222 22221 11246799999988 788888888999999999874332
Q ss_pred E-EeeeecCcEEEEE-----ECCCCCEEEEEeCCceEEEEe-ccCceeeeeec
Q 000992 110 E-VVGRVEGGVRFIS-----PSPDGDLLGVTTGFGQILVMT-HDWDLLYENPL 155 (1196)
Q Consensus 110 e-~vg~~~~~I~~~a-----wSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l 155 (1196)
. -|...++-|+..+ ..|....+++++.|--.++|+ +++..+.+.+.
T Consensus 334 ~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 334 KKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 1 1222222233332 456666778888887777886 44555555543
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=91.68 E-value=1 Score=56.81 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=96.8
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL 260 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl 260 (1196)
-+-++++|- +|. ..++|-+-|..+-+.+.++..|.+.+.+ |.-+||++++++... ++..
T Consensus 183 mR~Nnr~lf-~G~------t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~--------R~~~---- 241 (1118)
T KOG1275|consen 183 MRYNNRNLF-CGD------TRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSM--------RRYN---- 241 (1118)
T ss_pred EEecCcEEE-eec------ccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeeccc--------cccc----
Confidence 345666665 453 3567777777777777777777765543 556777777776421 1100
Q ss_pred eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 261 ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 261 ~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
+. -|. -|++||+.++.. .-.+.++ .++..+.|+|.=..++++.+.
T Consensus 242 ------l~-----------------------~D~---FvkVYDLRmmra--l~PI~~~-~~P~flrf~Psl~t~~~V~S~ 286 (1118)
T KOG1275|consen 242 ------LA-----------------------MDP---FVKVYDLRMMRA--LSPIQFP-YGPQFLRFHPSLTTRLAVTSQ 286 (1118)
T ss_pred ------cc-----------------------ccc---hhhhhhhhhhhc--cCCcccc-cCchhhhhcccccceEEEEec
Confidence 00 122 589999988652 1223332 133668899988888888888
Q ss_pred CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEE
Q 000992 341 DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 341 ~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~l 419 (1196)
+|+....+-+ . ..+ ||...+.+ ...+.+....+|++| +.||.+.++|.|.+
T Consensus 287 sGq~q~vd~~---~---------------------lsN--P~~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 287 SGQFQFVDTA---T---------------------LSN--PPAGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNL 338 (1118)
T ss_pred ccceeecccc---c---------------------cCC--CccceeEEccCCCcceeEEecCCC--ceEEEecccCcEee
Confidence 8875432210 0 000 11111111 234458889999999 99999999999999
Q ss_pred EeC
Q 000992 420 VDL 422 (1196)
Q Consensus 420 w~~ 422 (1196)
|.-
T Consensus 339 wa~ 341 (1118)
T KOG1275|consen 339 WAD 341 (1118)
T ss_pred ecC
Confidence 983
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.1 Score=57.58 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-E
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-V 111 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~ 111 (1196)
+..|.|-+++.++.||. -.... ++. .. ..+.+.....-.+++=..+| .||+||.+|+|+|||..+.... .
T Consensus 543 e~tflGls~n~lfriDp--R~~~~--k~v--~~--~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~ 613 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDP--RLSGN--KLV--DS--QSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTA 613 (794)
T ss_pred CceEEEECCCceEEecc--CCCCC--cee--ec--cccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhc
Confidence 44555655666999998 33221 111 00 11122223455677767776 7899999999999997664332 3
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
+.+...+|..+.-|.||++|+..+ +.-+.|+.
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~ 645 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATC-KTYLLLID 645 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence 333467899999999999987544 44565543
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.61 E-value=6 Score=50.83 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=112.5
Q ss_pred HhhCHHHHHHHHHHcCC-CcHHHHHHHHHHHhcChHHHHhhc-------CCc----H---------H---HH--------
Q 000992 943 RLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-------TDP----A---------K---ME-------- 990 (1196)
Q Consensus 943 ~L~ry~~Al~~l~~~g~-~~~~~ale~~~~~~~ly~~AL~L~-------~d~----~---------~---~~-------- 990 (1196)
.-++-.+|++.|+++.+ ..+.+.++...+- +-|++-++.. ..| + + ..
T Consensus 1116 ~~~~v~dAieSyikadDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~ 1194 (1666)
T KOG0985|consen 1116 QGGLVKDAIESYIKADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNV 1194 (1666)
T ss_pred hcCchHHHHHHHHhcCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCc
Confidence 35778899999999863 3467777777777 8887766543 111 1 1 11
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAA 1070 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa 1070 (1196)
.=....|+-+.+.+.|+.|-++|....|+.|..-..+..|.|+.|...|++-+ +..-+++++ -.+...+.+.-|-
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn-s~ktWK~Vc----faCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN-STKTWKEVC----FACVDKEEFRLAQ 1269 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHH----HHHhchhhhhHHH
Confidence 11346789999999999999999999999999999999999999999999865 434445444 4444555666554
Q ss_pred HHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1071 KIALD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1071 ~i~~~---yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+=+. ++.+.++-|+.|-.-+.|+|-+.|.+.
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 33222 256889999999999999998876543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.3 Score=44.99 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=51.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcHHHH---------HHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYHADC---------LNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~a---------le~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~ 1002 (1196)
+..+.+....|+|++|...|.+.-....+.. -...... +.|++|+.++ .++.....+....|+-+..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYDEALATLQQIPDEAFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 4456777778999999999887642211111 1222566 8899999988 3444455566666666666
Q ss_pred ccCHHHHHHHHHhC
Q 000992 1003 VKCFEDAATTYFCC 1016 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~a 1016 (1196)
.|++++|...|.+|
T Consensus 131 ~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 131 QGDYDEARAAYQKA 144 (145)
T ss_pred CCCHHHHHHHHHHh
Confidence 66666666666543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.38 E-value=3.1 Score=52.78 Aligned_cols=150 Identities=12% Similarity=0.193 Sum_probs=89.1
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHH--hcChHHHHh----hc-C---CcH--HHHHHHHHHHHHHhcccC
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKY--AQLFPLGLK----LI-T---DPA--KMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~--~~ly~~AL~----L~-~---d~~--~~~~i~~~~A~~L~~~~~ 1005 (1196)
|.+-..-|.||.|++.|.+.. ...-.|+-+..-+ -+|....-. ++ . ++. .+..+...|...+ ...+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~-~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F-~~td 342 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE-FNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSF-EITD 342 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTT-TTT-
T ss_pred HHHHHHHhhHHHHHHHHHhhc-cCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHH-hccC
Confidence 477778899999999999832 2235555444222 022222211 22 1 111 3456666777755 4668
Q ss_pred HHHHHHHHHhCCCHH---------HHH-HHHHHcCCHHHHHH-----------HHhh------cCCCHHHHHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLE---------KAM-KAYRASGNWSGVLT-----------VAGL------LKLGKDEVAKLAQELCE 1058 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~---------kAl-~~y~~~g~w~~al~-----------la~~------l~~~~~~~~~l~~~la~ 1058 (1196)
.++|..+|.....+. +++ +.....++|...+- +..+ +.-.++.+.+++...|.
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 899998888776532 222 33345566766662 1112 22245678899999999
Q ss_pred HHHHcCChHHHHHHHHHhcCCHHHHHHHHHHh
Q 000992 1059 ELQALGKPGEAAKIALDYCGDVTNGISLLIDA 1090 (1196)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~ 1090 (1196)
.+.+.|++.+|..+|.- +++++.++++.++.
T Consensus 423 ~~e~~g~~~dAi~Ly~L-a~~~d~vl~lln~~ 453 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHL-AEEYDKVLSLLNRL 453 (613)
T ss_dssp HHHHCT-HHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 99999999999999888 99999999999875
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=91.33 E-value=4.4 Score=39.32 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=62.0
Q ss_pred EeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 26 SALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 26 ~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
+.||-|+ +.|.++|+|.-|..++- +. + +.++ ...+.|+++..+.. ..++-|.++|+|-+|+.
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~-----~e---~------~~Ei--~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKG-----DE---I------VAEI--TETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeC-----Cc---E------EEEE--ecccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 3344442 68999999998877665 11 1 1111 11468999999988 56889999999999998
Q ss_pred CCCeEEEeeeecCcEEEEEECC-CC--C-EEEEEeCCceE
Q 000992 105 DGNATEVVGRVEGGVRFISPSP-DG--D-LLGVTTGFGQI 140 (1196)
Q Consensus 105 ~~~~~e~vg~~~~~I~~~awSP-Dg--~-~LA~~s~d~tV 140 (1196)
......+... ..+.++++.. +| . -|++|=.+|.|
T Consensus 71 ~~RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 71 SQRLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cceeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 7766665543 3356655543 32 1 35555556655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.5 Score=49.30 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=74.8
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCc------HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSY------HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~------~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
+.++.+-|+|.+|++++.+..+.. +-.|.++.... +.++.|=.+. ..++....+....++-+-.+++|
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qr-gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQR-GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 567788899999999999864321 23445556676 8888887765 21233445555678999999999
Q ss_pred HHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc
Q 000992 1007 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL 1042 (1196)
Q Consensus 1007 ~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l 1042 (1196)
..|..--.++-. ..-|.++|.+.|+|+.++.+...+
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 988766555432 245779999999999999877654
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=12 Score=47.27 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=86.7
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.+.+++.|+||..+|..+.++........+. -.....+. ..+ -.......-+|.++|..-. + +..
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~-~~~~~~~~----~~~------~~~~~Lt~PS~d~~g~vWt-v---d~~ 428 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTP-GASIGVHS----WGV------TADGRLTSPSWDGRGDLWV-V---DRD 428 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCC-CCcccccc----cee------eccCcccCCcCcCCCCEEE-e---cCC
Confidence 6889999999999999988775433211100 00000000 000 0012346788999885433 3 211
Q ss_pred cCCCCEEEEEECCCCcEEEEec-cCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--Ce-eEEEE-EeccCC
Q 000992 198 SKLHKRLKVWERDSGTLQASSE-LKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GL-ERSSF-DINEQI 271 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~~~e-~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl-~~~~f-~l~~~~ 271 (1196)
..+.+.+++... +|+....-- ...+ .|..+..||||-.+|....... .....|..-+|+ |. ...++ .+ .+.
T Consensus 429 ~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g-~~~v~va~V~R~~~G~~~l~~~~~l-~~~ 505 (599)
T PRK13613 429 PADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDG-RRSLQIGRIVRDAKAVVSVEEFRSL-APE 505 (599)
T ss_pred CCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCC-CcEEEEEEEEeCCCCcEEeeccEEe-ccC
Confidence 123346888877 777643221 2334 7899999999999998765321 112223334553 32 11111 11 122
Q ss_pred CCcEEEEEEccCCCeeEEEE
Q 000992 272 DSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~ 291 (1196)
-..+.+++|..++++++.+.
T Consensus 506 l~~v~~~~W~~~~sL~Vlg~ 525 (599)
T PRK13613 506 LEDVTDMSWAGDSQLVVLGR 525 (599)
T ss_pred CCccceeEEcCCCEEEEEec
Confidence 23489999999999877553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.07 E-value=4 Score=41.07 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHhcccCHHHHHHHHHhCCCHHHHHHHHHHc-CCHHHHHHHHhh
Q 000992 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRAS-GNWSGVLTVAGL 1041 (1196)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~-g~w~~al~la~~ 1041 (1196)
..+...+-|++|..+|.+.|++++|++.+... ++.+.|+..+.+
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 33444556677777777777777777777766 667777766665
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.06 E-value=42 Score=40.33 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=98.1
Q ss_pred CCceEEEeeccccccCCCCEEEEEECC----CCcEEEEecc---C--CCc--eeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERD----SGTLQASSEL---K--AFM--GAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~----~G~l~~~~e~---~--~~~--v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+-+||. +.+.. ...|.|.|.. .-++.++.|+ . .+. -+.+---|+|+.+.|+=.+..+..+..+
T Consensus 86 ~Rr~Li-~PgL~-----SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf 159 (461)
T PF05694_consen 86 ERRYLI-LPGLR-----SSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGF 159 (461)
T ss_dssp -S-EEE-EEBTT-----T--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EE
T ss_pred cCCcEE-eeeec-----cCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcE
Confidence 456887 67653 3678888874 3356677664 1 122 2455566999988887555444456677
Q ss_pred EEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC-----------------cceEEEEEecCCEEEEEEE
Q 000992 253 VFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-----------------YDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 253 ~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-----------------~~~V~lW~~~n~~wylkq~ 314 (1196)
.+.+.++ ...+.+.........-.++-|.|--+++.+.....+ ++++.+||+...+ ++|+
T Consensus 160 ~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~ 237 (461)
T PF05694_consen 160 VLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQT 237 (461)
T ss_dssp EEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEE
T ss_pred EEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeE
Confidence 7777553 223333322222334668889998888888765431 4599999999865 5788
Q ss_pred EEEecCCc----EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCC-eeEEEEcCCEEEEeeccccCCCCCceeeee-
Q 000992 315 IRYLRRDG----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN-STALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1196)
Q Consensus 315 l~~~~~~~----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~-~~v~viDg~~l~lt~l~~~~vpppm~~~~l- 388 (1196)
+....+.. ....|+|+...-+.-.-.++++ |.|--..++. ..=.||+=... +...|.+| +|- +.+
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i----~~~~k~~~g~W~a~kVi~ip~~---~v~~~~lp-~ml-~~~~ 308 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSI----WRFYKDDDGEWAAEKVIDIPAK---KVEGWILP-EML-KPFG 308 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEE----EEEEE-ETTEEEEEEEEEE--E---E--SS----GGG-GGG-
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceE----EEEEEcCCCCeeeeEEEECCCc---ccCccccc-ccc-cccc
Confidence 87654332 4456777776533222222222 2332211110 01111211111 12234433 221 111
Q ss_pred cCCCCEEEEEEecCCCCCEE-EEEECCCcEEEEeCCCCCcc
Q 000992 389 KFPTAVTEMAFYSKSSKNCL-AAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~l-As~~~dg~v~lw~~~~~~~~ 428 (1196)
..+.-|+++..|.|. +.| ++.--+|.|+.||++.+..+
T Consensus 309 ~~P~LitDI~iSlDD--rfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 309 AVPPLITDILISLDD--RFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EE------EEE-TTS---EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cCCCceEeEEEccCC--CEEEEEcccCCcEEEEecCCCCCC
Confidence 135568899999998 665 56667899999999876444
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.00 E-value=42 Score=40.32 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=79.3
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEE-Eec---cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEee
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILV-MTH---DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l-~~~---~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvs 192 (1196)
+....+.-+|||.+++.+.. |++.. |+. .|.++. . +....+..+.|++||..++ ++
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~---~---------------~~~~~l~~v~~~~dg~l~l-~g 298 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHN---R---------------ASARRIQNMGWRADGGLWL-LT 298 (398)
T ss_pred cceeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEec---C---------------CCccceeeeeEcCCCCEEE-Ee
Confidence 44566778999988877654 44432 221 133221 1 1123568899999999887 55
Q ss_pred ccccccCCCCEEEEEECCCCcEEE--Eec----c-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 193 EFCNSSKLHKRLKVWERDSGTLQA--SSE----L-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~~--~~e----~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
. .+.+ +|..+.|+.-. .+. + ....+.++.|.++++.+++|..- +++...+|-.+ |
T Consensus 299 ~-------~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G--------~v~~s~D~G~t--W 360 (398)
T PLN00033 299 R-------GGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG--------ILLRSTDGGKS--W 360 (398)
T ss_pred C-------CceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC--------cEEEeCCCCcc--e
Confidence 3 2443 45565664211 111 1 11246889999999999998652 33444333222 1
Q ss_pred Ee-c--cCCCCcEEEEEEccCCCeeEEEEc
Q 000992 266 DI-N--EQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 266 ~l-~--~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.. + ..-....+++.|.++++..+++..
T Consensus 361 ~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 361 KRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred eEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 11 1 111345889999998888887643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=90.98 E-value=3.7 Score=41.69 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCHH-----------HHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLE-----------KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE 1059 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~-----------kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~ 1059 (1196)
...-..|..+...++|++|...|..+-+.. +...++...|++++|+....... ++.-........++.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHH
Confidence 334457788888888888888887664321 12356666777887777665432 211112233445555
Q ss_pred HHHcCChHHHHHHHHH
Q 000992 1060 LQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1060 L~~~~~~~eAa~i~~~ 1075 (1196)
+...|++.+|...|.+
T Consensus 128 ~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 128 YLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5556666666555543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=7.5 Score=46.60 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=82.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEE-EECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cc---
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLL-HSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WD--- 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~l-w~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d--- 148 (1196)
+....+.-++||..++++. .|.+.. |+.-....+ ..+ ....+.++.|++||.+++.+ ..|.+. ++++ ..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~-~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~ 314 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSS-RGNFYLTWEPGQPYWQPHNRA-SARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEE 314 (398)
T ss_pred cceeeEEEcCCCCEEEEEC-CccEEEecCCCCcceEEecCC-CccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccc
Confidence 3456677889988777654 565544 443222122 222 24679999999999887654 566654 3332 11
Q ss_pred --eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccCCC
Q 000992 149 --LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAF 223 (1196)
Q Consensus 149 --~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~~~ 223 (1196)
...+..... ....+..+.|.+|+..++ ++. .+.+.+..- .|+.=... .+...
T Consensus 315 ~~~f~~~~~~~--------------~~~~l~~v~~~~d~~~~a-~G~-------~G~v~~s~D-~G~tW~~~~~~~~~~~ 371 (398)
T PLN00033 315 DFDFEEADIKS--------------RGFGILDVGYRSKKEAWA-AGG-------SGILLRSTD-GGKSWKRDKGADNIAA 371 (398)
T ss_pred ccceeecccCC--------------CCcceEEEEEcCCCcEEE-EEC-------CCcEEEeCC-CCcceeEccccCCCCc
Confidence 111111110 012468899999999888 553 356655443 56542221 23344
Q ss_pred ceeEEEEcCCCCeEEEEec
Q 000992 224 MGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~ 242 (1196)
....+.|.++++.++++..
T Consensus 372 ~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 372 NLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred ceeEEEEcCCCceEEEeCC
Confidence 5679999999998888754
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=90.84 E-value=9.9 Score=44.49 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=55.9
Q ss_pred EEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC----CceEEEeecc
Q 000992 119 VRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEF 194 (1196)
Q Consensus 119 I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD----G~~lAsvss~ 194 (1196)
-++|+|.|||+++++ ...|.|.+.+.+.+....+. ... .| +.....+...|++.|+ +.+++ ..+.
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~--~~~---~v----~~~~~~gllgia~~p~f~~n~~lYv-~~t~ 72 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVA--DLP---EV----FADGERGLLGIAFHPDFASNGYLYV-YYTN 72 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEE--E-T---TT----BTSTTBSEEEEEE-TTCCCC-EEEE-EEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceec--ccc---cc----cccccCCcccceeccccCCCCEEEE-EEEc
Confidence 478999999988775 55899998875555411111 000 00 1122346789999995 66555 2321
Q ss_pred ccccCCCC--EEEEEECCCC--cEEE-----Eecc----CCCceeEEEEcCCCCeEEEEecC
Q 000992 195 CNSSKLHK--RLKVWERDSG--TLQA-----SSEL----KAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 195 d~~~~~d~--~irVWd~~~G--~l~~-----~~e~----~~~~v~slawsPdG~~IAs~s~d 243 (1196)
........ .|.-|....+ .+.. ...+ .......|+|.|||.+.++.+..
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 10000111 2222332222 1111 1111 12234679999999887777654
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.78 E-value=13 Score=43.66 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=79.7
Q ss_pred cCcEEEEEECCCCCEEEEEeCCceEEEE-e---ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 116 EGGVRFISPSPDGDLLGVTTGFGQILVM-T---HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 116 ~~~I~~~awSPDg~~LA~~s~d~tV~l~-~---~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
.+.+.++.++|||..++++ ..|.+..- + +.|..+.. +....+..+.+.|+|+.++ +
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~------------------~~~~~l~~i~~~~~g~~~~-v 231 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQR------------------NSSRRLQSMGFQPDGNLWM-L 231 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeC------------------CCcccceeeeEcCCCCEEE-E
Confidence 4568999999998766544 45655432 1 12332211 1123568899999999887 6
Q ss_pred eccccccCCCCEEEEEECCCCcEEEE-ecc---CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQAS-SEL---KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI 267 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~-~e~---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l 267 (1196)
+. .+.+++=+.+.|+.-.. ..+ ....+.+++|+|+|..++++.. ..++...+|-.+-+ .+
T Consensus 232 g~-------~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~--------G~v~~S~d~G~tW~-~~ 295 (334)
T PRK13684 232 AR-------GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN--------GTLLVSKDGGKTWE-KD 295 (334)
T ss_pred ec-------CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC--------CeEEEeCCCCCCCe-EC
Confidence 54 35554334445542211 111 1123578999999998887754 24455555422211 11
Q ss_pred c--cCCCCcEEEEEEccCCCeeEEEEc
Q 000992 268 N--EQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 268 ~--~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
+ .......+.+.|-.+++.+|++..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 296 PVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred CcCCCCCcceEEEEEeCCCceEEECCC
Confidence 1 111235778888888888776644
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.82 Score=54.45 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=68.8
Q ss_pred hHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHh
Q 000992 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLS 1001 (1196)
Q Consensus 922 lpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~ 1001 (1196)
+.++++|.+-++. +... -.+.+..+++ ..+|+.++.+. |+.. |.. -.++..+|++|.
T Consensus 189 i~lle~L~~~~pe-----v~~~------LA~v~l~~~~--E~~AI~ll~~a-------L~~~--p~d-~~LL~~Qa~fLl 245 (395)
T PF09295_consen 189 IELLEKLRERDPE-----VAVL------LARVYLLMNE--EVEAIRLLNEA-------LKEN--PQD-SELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHhcCCc-----HHHH------HHHHHHhcCc--HHHHHHHHHHH-------HHhC--CCC-HHHHHHHHHHHH
Confidence 6777777766432 2221 1333334433 46666555444 3322 222 678889999999
Q ss_pred cccCHHHHHHHHHhC--------CCHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 000992 1002 DVKCFEDAATTYFCC--------SSLEKAMKAYRASGNWSGVLTVAGLLKLG 1045 (1196)
Q Consensus 1002 ~~~~~~eAa~~y~~a--------g~~~kAl~~y~~~g~w~~al~la~~l~~~ 1045 (1196)
.+++|+.|..+..+| .-+....++|+..|+|++|+......++.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999888 34578889999999999999877766543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=90.54 E-value=2.5 Score=46.38 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=12.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVS 956 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~ 956 (1196)
+.........|+|++|+..|.+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~ 58 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEA 58 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3334444456677777776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.33 E-value=9.2 Score=49.26 Aligned_cols=112 Identities=12% Similarity=0.090 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHh-----------------------------------CCCHHHHHHHHHHc----
Q 000992 989 MEQVLEAWADHLSDVKCFEDAATTYFC-----------------------------------CSSLEKAMKAYRAS---- 1029 (1196)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~-----------------------------------ag~~~kAl~~y~~~---- 1029 (1196)
-..++..+|+|...+++|.-|-.-|+. .+.++||+.+|.+.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 345667788888888887777663322 12347777776632
Q ss_pred -----------------CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-----HHHHHH-
Q 000992 1030 -----------------GNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-----TNGISL- 1086 (1196)
Q Consensus 1030 -----------------g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-----~~Ai~~- 1086 (1196)
|+|.+|..+-.+....-.+..+....+|.-+.++|+|..|.++|...+.++ .+-+.+
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 356666666555421111112444557777788888888888887744332 233333
Q ss_pred ---HHHhcCHHHHHHHH
Q 000992 1087 ---LIDARDWEEALRVA 1100 (1196)
Q Consensus 1087 ---y~~~~~w~eA~rla 1100 (1196)
|-+++.|.+|.+-+
T Consensus 723 ara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 33456677666543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.8 Score=56.33 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1196)
.-...++...+++.+++--+..=|..|.+.|++++|..+|.++-.|+ +++ ...+..+|..+... +.
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------------~~n-~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------------RDN-PEIVKKLATSYEEE-DK 165 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------ccc-HHHHHHHHHHHHHh-hH
Confidence 34556666667766666555666677777777777777765444332 222 24667777777777 88
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHH
Q 000992 1067 GEAAKIALDYCGDVTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1067 ~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
..|.+.+.+ ||..|+.-+++.++..+=.
T Consensus 166 ~KA~~m~~K-------AV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 166 EKAITYLKK-------AIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHH-------HHHHHHhhhcchHHHHHHH
Confidence 888877665 9999999999999987543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.44 Score=52.05 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeE--EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccC
Q 000992 76 DSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~ 147 (1196)
+.|.+++-+|-. ..+|.|+.||.|.|||.+.... ..+-.|+..|+-+-|.| +++-|.++++||.+..|+...
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 458888888865 5678999999999999876432 35566889999999998 588999999999997776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.26 E-value=4.7 Score=51.79 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=87.9
Q ss_pred HHhhCHHHHHHHHHHc---CCC--cHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHHHH
Q 000992 942 LRLQRFENALKHIVSM---GDS--YHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAATT 1012 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~---g~~--~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~ 1012 (1196)
.-.|.+++|++.|-+. .+- +..--|-.+--+-+-|..|+.++ ....+..+++...|.-+..+++|..|..+
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 3456677777776532 110 00111222222226788888888 22233557788889999999999999999
Q ss_pred HHhCC-------CH---HHHHHHHHHcCCHHHHHHHH---hhcCCCHH----HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1013 YFCCS-------SL---EKAMKAYRASGNWSGVLTVA---GLLKLGKD----EVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1013 y~~ag-------~~---~kAl~~y~~~g~w~~al~la---~~l~~~~~----~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|+.|- +. .--.++|.++|.|++|..-+ .++.++.. .+..++.++|+...+..+ .-..++...
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k-~t~eev~~a 781 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK-RTLEEVLEA 781 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc-ccHHHHHHH
Confidence 99872 11 22347788888899988543 33322211 223445556665544333 334444333
Q ss_pred hcCCHHHHHHHHHHhcCHHH
Q 000992 1076 YCGDVTNGISLLIDARDWEE 1095 (1196)
Q Consensus 1076 yl~d~~~Ai~~y~~~~~w~e 1095 (1196)
.+..+.|+++++......+
T Consensus 782 -~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 782 -VKELEEARRLFTELSKNGD 800 (1018)
T ss_pred -HHHHHHHHHHHHHHHhcCC
Confidence 5677777777776554433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=90.17 E-value=6.9 Score=38.01 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=48.2
Q ss_pred EEEEEEcc---CC-CEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 78 ITAFDYLM---EK-EALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 78 v~~v~~sp---d~-~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|.+++++. || ..|++||+|..|++|+-+.-..|+.. .+.|.+++=.+. ..+|.+..+|||-++.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e--~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE--TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEec--ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 45555544 33 58999999999999998764444433 356888877777 67999999999998753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.14 E-value=4.2 Score=46.68 Aligned_cols=164 Identities=17% Similarity=0.118 Sum_probs=86.3
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHH---hcChHHHH----hhcCCc-H-HHHHHHHHHHHHHhcccCHHH
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKY---AQLFPLGL----KLITDP-A-KMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~---~~ly~~AL----~L~~d~-~-~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
|.-..-||+|+.++.-+.+.... .-+|+.++-.. |..-+.++ +++.++ . .-..+...-|-.+...+++++
T Consensus 42 ~Rs~iAlg~~~~vl~ei~~~~~~-~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~ 120 (290)
T PF04733_consen 42 YRSYIALGQYDSVLSEIKKSSSP-ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEE 120 (290)
T ss_dssp HHHHHHTT-HHHHHHHS-TTSSC-CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHcCChhHHHHHhccCCCh-hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHH
Confidence 34444577777777666544321 23333333221 11122232 222111 1 112233344455666778888
Q ss_pred HHHHHHhCCCHHH---HHHHHHHcCCHHHHHHHHhhcC-CCHHH-HHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH---
Q 000992 1009 AATTYFCCSSLEK---AMKAYRASGNWSGVLTVAGLLK-LGKDE-VAKLAQELCEELQALGKPGEAAKIALDYCGDV--- 1080 (1196)
Q Consensus 1009 Aa~~y~~ag~~~k---Al~~y~~~g~w~~al~la~~l~-~~~~~-~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~--- 1080 (1196)
|.......++.|- ++.+|...++.+.|-.....+. .+++. +..+++..........++.+|-.+|.+....+
T Consensus 121 AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t 200 (290)
T PF04733_consen 121 ALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST 200 (290)
T ss_dssp HHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred HHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence 8777777766642 3477888888777765554432 22222 22333333333333457999999999965553
Q ss_pred ----HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1081 ----TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1081 ----~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
..-.-+++..++|+||-.+..+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2233467789999999887665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.92 E-value=21 Score=44.59 Aligned_cols=160 Identities=14% Similarity=0.040 Sum_probs=87.2
Q ss_pred EEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccC
Q 000992 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK 199 (1196)
Q Consensus 120 ~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~ 199 (1196)
.+++.|+||..+|....++.+.++... ...... +. -.....-+|.++|-.=. +- ++
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~-~~----------------~~~Lt~PS~d~~g~vWt-v~--~g--- 392 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLL-DT----------------RPGLVAPSLDAQGYVWS-TP--AS--- 392 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceee-cc----------------CCccccCcCcCCCCEEE-Ee--CC---
Confidence 789999999999999888766554221 011110 00 01246788999884322 22 11
Q ss_pred CCCEEEEEECCCCcEEEEe-c-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE-E--ec-cCCCC
Q 000992 200 LHKRLKVWERDSGTLQASS-E-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF-D--IN-EQIDS 273 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~-e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~--l~-~~~~~ 273 (1196)
..+.+..... +|+....- . ...+.|..+..|+||..+|...+..+ ..+..|.--.|.|.....+ + +. .+...
T Consensus 393 ~~~~l~~~~~-~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g-~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~ 470 (557)
T PRK13615 393 DPRGLVAWGP-DGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGA-GPQLLVASIVRDGGVPTSLTTTPLELLASPG 470 (557)
T ss_pred CceEEEEecC-CCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCC-CCEEEEEEEEeCCCcceEeeeccEEcccCcC
Confidence 1222333333 56654331 1 13357899999999999998765322 1122333355643311111 1 11 12234
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
.+.+++|..++++.+.+...+....+++-.+.
T Consensus 471 ~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~ 502 (557)
T PRK13615 471 TPLDATWVDELDVATLTLAPDGERQVELHQVG 502 (557)
T ss_pred cceeeEEcCCCEEEEEeccCCCCceEEEEECC
Confidence 78999999999977766432222245555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.88 E-value=45 Score=43.49 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCC---CHHHHHHHHHHcCCHHHHHH---HHhhc-C---CCHH---------HHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCS---SLEKAMKAYRASGNWSGVLT---VAGLL-K---LGKD---------EVA 1050 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag---~~~kAl~~y~~~g~w~~al~---la~~l-~---~~~~---------~~~ 1050 (1196)
..++...|.---..+.-.+|...|++|. +|..-++...++|.|++++. +|++- . .+.+ ++.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLT 1183 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHH
Confidence 3566666666677888899999999996 56778888889999998874 44331 1 1100 000
Q ss_pred H-----------HHHHHHHHHHHcCChHHHHHHHHH------------hcCCHHHHHHHHHHhc
Q 000992 1051 K-----------LAQELCEELQALGKPGEAAKIALD------------YCGDVTNGISLLIDAR 1091 (1196)
Q Consensus 1051 ~-----------l~~~la~~L~~~~~~~eAa~i~~~------------yl~d~~~Ai~~y~~~~ 1091 (1196)
+ -...+++++-+.|.|+.|.-+|-. |+|++..||+.-.|++
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1 123355677788888877666644 4555555555555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.70 E-value=21 Score=44.29 Aligned_cols=149 Identities=16% Similarity=0.174 Sum_probs=100.7
Q ss_pred CCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCC-CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHH
Q 000992 916 RDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGD-SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKM 989 (1196)
Q Consensus 916 ~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~-~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~ 989 (1196)
|-|+=.|-+||-|- .++.|-.--.-|+.||+-|--.-. .-++.-+.++..| .+=..++..| .+|+.
T Consensus 100 kmpRIwl~Ylq~l~------~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~-~lPets~rvyrRYLk~~P~~- 171 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLI------KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH-GLPETSIRVYRRYLKVAPEA- 171 (835)
T ss_pred cCCHHHHHHHHHHH------hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC-CChHHHHHHHHHHHhcCHHH-
Confidence 45554444444342 334555445558888887654321 2258888999999 9988888888 46665
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCC--HHHHHHHHhhcC-----------------CCHHHHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGN--WSGVLTVAGLLK-----------------LGKDEVA 1050 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~--w~~al~la~~l~-----------------~~~~~~~ 1050 (1196)
.+.|-++|....++.+|+.-|+..-+-++=+..+.+... |.+...+..+.+ --.+++-
T Consensus 172 ---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 172 ---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred ---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 456669999999999999999998887777666665543 888877666532 1133444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-|-..||++..+.|+++.|..+|.+
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyee 273 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEE 273 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5566677777777777777777655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.69 E-value=20 Score=40.01 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHhhcCCCHHHH-HHHHHHHHHHHHHcCC
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGN-------------------WSGVLTVAGLLKLGKDEV-AKLAQELCEELQALGK 1065 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~-------------------w~~al~la~~l~~~~~~~-~~l~~~la~~L~~~~~ 1065 (1196)
...|+++|...|+++.|+++....+. .++.+.-+.. .+.+.. ..||...........+
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchh
Confidence 34688889999999888877766442 2222222222 233322 2344444444455677
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHhcCHHHHHHHHH
Q 000992 1066 PGEAAKIALDYCGDV-------TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1066 ~~eAa~i~~~yl~d~-------~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
+.+|--+|.++.+.+ ..-.-+++..++|+||-.+.+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 999999999966522 223345667889999976543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=89.66 E-value=19 Score=43.45 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=51.4
Q ss_pred HHHHHHh--cCCcchhhHHHHHHhcC-Chh-----hhcccHHHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHh
Q 000992 908 AIVALNS--QRDPKEFLPYLQELESM-PPL-----LMRYTIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYA 973 (1196)
Q Consensus 908 l~vAq~s--q~DpkeYlpfL~~L~~l-~~~-----~~r~~Id~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~ 973 (1196)
++.|+-+ +.|+.+...+|++..+. +.. +...+|....|+|++|+..+.+. .+++. .....++...
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~- 200 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRS- 200 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-
Confidence 3445544 48988888888886554 221 22478888899999999887765 33333 2445556777
Q ss_pred cChHHHHhhc
Q 000992 974 QLFPLGLKLI 983 (1196)
Q Consensus 974 ~ly~~AL~L~ 983 (1196)
+.|+.|++++
T Consensus 201 ~d~~~a~~~l 210 (409)
T TIGR00540 201 GAWQALDDII 210 (409)
T ss_pred hhHHHHHHHH
Confidence 8899888877
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.54 E-value=3.1 Score=45.56 Aligned_cols=67 Identities=27% Similarity=0.240 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-------------CHHHHHHHHhhcCCCHH-HHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASG-------------NWSGVLTVAGLLKLGKD-EVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g-------------~w~~al~la~~l~~~~~-~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
++|..+|..+|..+-|..+..+++ -|++++.+..+- +.. .--+++..++..|...++|.||+..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 445555555555444444443333 145566555442 222 1246788888889999999999998
Q ss_pred HHH
Q 000992 1073 ALD 1075 (1196)
Q Consensus 1073 ~~~ 1075 (1196)
+++
T Consensus 173 ~lK 175 (308)
T KOG1585|consen 173 FLK 175 (308)
T ss_pred HHH
Confidence 877
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=7.9 Score=50.64 Aligned_cols=118 Identities=12% Similarity=0.048 Sum_probs=76.5
Q ss_pred HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh-
Q 000992 968 LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL- 1041 (1196)
Q Consensus 968 ~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~- 1041 (1196)
++++. +.+++|.+.| .||+ -..+++.||.+|... +.++|..||. ||+..|+..+++.+++.+=.+
T Consensus 125 ~Ydk~-g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~------KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 125 AYAKL-NENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLK------KAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHc-CChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHH------HHHHHHHhhhcchHHHHHHHHH
Confidence 45566 6666666666 4543 456889999999999 9999999885 588889988886666653322
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+...+++...+..-+-..+.+.+ +..++.+++ --.+.|-++++|++++.+.+.
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~-------~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHRE-FTRLVGLLE-------DLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhc-cchhHHHHH-------HHHHHHhhhhhhhHHHHHHHH
Confidence 22344555544444444444433 333333332 345778899999999876554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=89.42 E-value=36 Score=42.42 Aligned_cols=53 Identities=8% Similarity=0.134 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1024 KAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1024 ~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
++|.++|+..+|...+.+. .+|..+. -|...+|.++..+.+-++|+++...|-
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~aDR-~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDTADR-AINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccchhH-HHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 6667777777777655432 2333332 355578888888888888888777764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=89.30 E-value=12 Score=49.06 Aligned_cols=168 Identities=15% Similarity=0.019 Sum_probs=111.2
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHcCCCcHH------HHHHHHHHHhcChHHHHhhc---CCc-HHHHHHHHHHHHHHhcc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSMGDSYHA------DCLNLMKKYAQLFPLGLKLI---TDP-AKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~------~ale~~~~~~~ly~~AL~L~---~d~-~~~~~i~~~~A~~L~~~ 1003 (1196)
.+-++.|..-.|+|+.|+..|.++-....+ ..+.+.-.. +.+++|+..+ .+| ...-..+...|.-+..+
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 344456667788999999998877421112 224556677 8899999988 232 22233444567899999
Q ss_pred cCHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLLK-LGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l~-~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
++|.+|..+|.++-.. -..+..|...++..+|+..+.++. .+++ . ..+..++..+...+++.+|.+.|.
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~-~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-V-QNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-h-HHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999988321 122366778889999998887753 2222 2 223444555556778877888888
Q ss_pred HhcC----CHHH---HHHHHHHhcCHHHHHHHHHhcC
Q 000992 1075 DYCG----DVTN---GISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1075 ~yl~----d~~~---Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
+.+. +.+- =+..+.+.+--.-|.+++.+|+
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 8542 2222 2344557788889999999886
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.24 E-value=76 Score=40.57 Aligned_cols=174 Identities=17% Similarity=0.142 Sum_probs=93.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcE--EEEECCC-CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLL--LLHSVDG-NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I--~lw~~~~-~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+..+..+.|+|||+.++..+.+|.. .+|-... + ....+..+|....|||+|+.++..+.++.... +..
T Consensus 59 ~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~---~~~--- 129 (620)
T COG1506 59 GGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKR---DGG--- 129 (620)
T ss_pred CCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEeccccccc---CCc---
Confidence 5788999999999999998855542 2332221 2 23344567899999999999998444432211 111
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
. .... .-..+-|.++|. ....+.+.|. ++ ...........+...+|.
T Consensus 130 ~-~~~~-----------------~~~~~~~~~~g~-------------~~~~l~~~d~-~~-~~~~~~~~~~~~~~~~~~ 176 (620)
T COG1506 130 D-HLFV-----------------DRLPVWFDGRGG-------------ERSDLYVVDI-ES-KLIKLGLGNLDVVSFATD 176 (620)
T ss_pred e-eeee-----------------cccceeecCCCC-------------cccceEEEcc-Cc-ccccccCCCCceeeeeeC
Confidence 0 0000 002233444440 1233444454 32 111122233445677777
Q ss_pred CCCCeEEEEecCCC-CCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 232 PSGANIAAVYDRKS-ENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 232 PdG~~IAs~s~d~~-~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
++++.+++...+.. ..-.....++. .+|.... + .+....+..+.|.+||+.++..+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~gk~~~~~~~~~ 237 (620)
T COG1506 177 GDGRLVASIRLDDDADPWVTNLYVLIEGNGELES---L-TPGEGSISKLAFDADGKSIALLGTES 237 (620)
T ss_pred CCCceeEEeeeccccCCceEeeEEEecCCCceEE---E-cCCCceeeeeeeCCCCCeeEEeccCC
Confidence 77888888876532 11111122221 2332211 1 22345688999999999777776655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=89.10 E-value=15 Score=46.99 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1046 KDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1046 ~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.++..+++.++|+.|.+.|+|.+|-.++-.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445568899999999999999998766544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.04 E-value=7.5 Score=48.12 Aligned_cols=214 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhC-------HHHHHHHHHHcC--CCcHHHHHHHH-------
Q 000992 906 LAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQR-------FENALKHIVSMG--DSYHADCLNLM------- 969 (1196)
Q Consensus 906 lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~r-------y~~Al~~l~~~g--~~~~~~ale~~------- 969 (1196)
++.-.---||-.++|=++.+++|...-.+-. -+-.-+|| |++|.+.|.... +..+-+-+|++
T Consensus 323 ~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~--wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL 400 (638)
T KOG1126|consen 323 LGEGYRSLSQYNCREALNLFEKLPSHHYNTG--WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhcCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Q ss_pred -HHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC---------------------CCHHHHHHHHH
Q 000992 970 -KKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC---------------------SSLEKAMKAYR 1027 (1196)
Q Consensus 970 -~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a---------------------g~~~kAl~~y~ 1027 (1196)
+++ .|=-.|.+|.......++-|.+.|.-+.-|++|+.|.+.|++| .++++|+.+|+
T Consensus 401 q~~v-~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr 479 (638)
T KOG1126|consen 401 QDEV-ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFR 479 (638)
T ss_pred HhhH-HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHH
Q ss_pred HcC---------------------CHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-------
Q 000992 1028 ASG---------------------NWSGVL-TVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------- 1078 (1196)
Q Consensus 1028 ~~g---------------------~w~~al-~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------- 1078 (1196)
.+- +++.|. ..-+.+...+.... +..-++..+.+.|+.++|-++|.+-+.
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv-i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV-ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred hhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh-HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHH
Q 000992 1079 DVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSL 1123 (1196)
Q Consensus 1079 d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~ 1123 (1196)
-.=.-+.++...+.++||+.+.+.-+.--.-|. |.-.+..-+.++
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.9 Score=50.09 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=42.1
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
-.+|+||.+|+|+|||.-+.... .+.+...+|.-+--+.||++|. ||.+..+.+++
T Consensus 442 G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 442 GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLID 498 (644)
T ss_pred ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEE
Confidence 48899999999999998553322 2333456899999999999986 55566777765
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.92 E-value=15 Score=42.94 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=64.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCc------EEEEecccccc-cccceee-ccccccc---cccCCC-CCCEEEEEEccCCCE
Q 000992 22 ILQFSALDIEQNRLFFASSANN------IYSAQLSSFQN-ERASIKT-AISAEIE---HIDLEP-GDSITAFDYLMEKEA 89 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~------i~~~~~~~~~~-~~~~~~~-~~~~~l~---~~~~~~-~~~v~~v~~spd~~~ 89 (1196)
.+.++++|++++.+|.+|+++. ++..++....+ .....+. ..+ |. +.++.+ .--.=+|++.++|..
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIP--LRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecccee--ccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 6889999999999999999988 87777621011 1111110 000 10 111100 012337788666655
Q ss_pred EEEEECCC-------cEEEEECCCCeEEEe---e------------eecCcEEEEEECCCCCEEEEEeC
Q 000992 90 LIVGTSSG-------LLLLHSVDGNATEVV---G------------RVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 90 La~as~dG-------~I~lw~~~~~~~e~v---g------------~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
++ +++.+ .|.-++.++...+.+ . ....|..+++++|||+.|.++.+
T Consensus 99 ~i-s~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 99 WI-SSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EE-EeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 54 45544 566677764322111 1 12468999999999997777754
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=88.92 E-value=1.5 Score=43.40 Aligned_cols=80 Identities=15% Similarity=0.017 Sum_probs=41.3
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CC---CcHHHHHHHH---HHHhcChHHHHhhc-------CCcHHHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GD---SYHADCLNLM---KKYAQLFPLGLKLI-------TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~---~~~~~ale~~---~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A~ 998 (1196)
++.+...+.+|+.++|+.+|.++ |. .+.+..|.+- +.. +.+++|+.++ .+++-...+..-+|.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44556667777777777777654 21 1111112221 445 5666666665 122223344444556
Q ss_pred HHhcccCHHHHHHHHHh
Q 000992 999 HLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ 1015 (1196)
-|...+++++|...+..
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 66666666666555544
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=59 Score=38.83 Aligned_cols=71 Identities=8% Similarity=0.111 Sum_probs=44.5
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCC---CEE-EEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGD---SIT-AFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~v~-~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
.++.||+.+.++.++.+|. .+++..|+.. ++.. ..+.+.. .+. ++ .-++..+.+++.+|.+.-+|.++
T Consensus 68 ~~~~vy~~~~~g~l~ald~--~tG~~~W~~~-~~~~---~~~~~~~~~~~~~~~~--~v~~~~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDA--DTGKEIWSVD-LSEK---DGWFSKNKSALLSGGV--TVAGGKVYIGSEKGQVYALNAED 139 (394)
T ss_pred ECCEEEEECCCCeEEEEEC--CCCcEeeEEc-CCCc---cccccccccccccccc--EEECCEEEEEcCCCEEEEEECCC
Confidence 5789999998888999999 7777777754 1110 0010000 000 01 11356677788899999999887
Q ss_pred CeE
Q 000992 107 NAT 109 (1196)
Q Consensus 107 ~~~ 109 (1196)
|++
T Consensus 140 G~~ 142 (394)
T PRK11138 140 GEV 142 (394)
T ss_pred CCC
Confidence 754
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.83 E-value=46 Score=43.10 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=52.2
Q ss_pred cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE-E---EeCCCeeE-E--EEEec----------cCCCCcEEEEEEcc
Q 000992 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV-F---YERNGLER-S--SFDIN----------EQIDSTVELLKWNC 282 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~-~---~e~nGl~~-~--~f~l~----------~~~~~~V~~laWSp 282 (1196)
+....|..|..||+|.++|-.+..+ ..|. + |-++|... | +...+ ......|..+.|.|
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~-----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP 156 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRG-----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHP 156 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCc-----EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcC
Confidence 3445689999999999999887642 1222 2 22233211 0 11111 11234699999999
Q ss_pred CC---CeeEEEEccCCcceEEEEEecCC
Q 000992 283 MS---DLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 283 Dg---~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
.| ..|++-.+|. ++++|++.+.
T Consensus 157 ~s~~~~~l~vLtsdn---~lR~y~~~~~ 181 (717)
T PF10168_consen 157 WSESDSHLVVLTSDN---TLRLYDISDP 181 (717)
T ss_pred CCCCCCeEEEEecCC---EEEEEecCCC
Confidence 85 7899999998 9999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=6.6 Score=45.10 Aligned_cols=77 Identities=13% Similarity=0.018 Sum_probs=41.9
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
...+.+...+|+|++|+..|.++ .++. ...++-+ ... +.|++|++.+ .+|.... ...|...+..
T Consensus 102 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~-g~~~eA~~~~~~al~~~P~~~~--~~~~~~l~~~ 177 (296)
T PRK11189 102 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL-YYG-GRYELAQDDLLAFYQDDPNDPY--RALWLYLAES 177 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC-CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHc
Confidence 34456777888999998887765 2321 1222222 345 6777777766 2332211 1122223344
Q ss_pred ccCHHHHHHHHHh
Q 000992 1003 VKCFEDAATTYFC 1015 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ 1015 (1196)
.+++++|...|.+
T Consensus 178 ~~~~~~A~~~l~~ 190 (296)
T PRK11189 178 KLDPKQAKENLKQ 190 (296)
T ss_pred cCCHHHHHHHHHH
Confidence 5567777666643
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.36 E-value=4.4 Score=42.92 Aligned_cols=92 Identities=21% Similarity=0.160 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-----------HHHHHHHHHcCCHHHHHHHHhhcC------CCH
Q 000992 984 TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-----------EKAMKAYRASGNWSGVLTVAGLLK------LGK 1046 (1196)
Q Consensus 984 ~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-----------~kAl~~y~~~g~w~~al~la~~l~------~~~ 1046 (1196)
...++.+..+...|+|+...|++++|...|.++-++ -.-++..+..++|..+.....+.. -+.
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 466788999999999999999999999999998665 233466666778887776544321 111
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1047 DEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1047 ~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+....+-.--|=+....|+|.+||+.|++
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHc
Confidence 11112211112222346777777777777
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.30 E-value=3 Score=48.85 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=41.6
Q ss_pred hhcccHHHHhhCHHHHHHHHHH---cCC------------CcHHHHHHHHHHHhcChHHHHhhcCCcHH---------HH
Q 000992 935 LMRYTIDLRLQRFENALKHIVS---MGD------------SYHADCLNLMKKYAQLFPLGLKLITDPAK---------ME 990 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~---~g~------------~~~~~ale~~~~~~~ly~~AL~L~~d~~~---------~~ 990 (1196)
+-+.+.-+++++|++|+..-+. ... -+.....++...| |.+||.+-.|-.+ ..
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h---f~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH---FQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH---HhhhhccChhhhhHHhHhhhHHHH
Confidence 3445777899999988875332 211 1223344555666 8888887622222 22
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHh
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1196)
..+++-|..+..+|+|++|.+.|..
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHH
Confidence 3444445555555444444444443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.28 E-value=7.7 Score=49.92 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=51.5
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEE-eccCceeeeeeccccc---CccccccCccc-cCCCCeEEEEEccCC---ceEE
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVM-THDWDLLYENPLEELA---EGFDVHEPELS-SSFSFKSPISWRGDG---KYFA 189 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~-~~~~d~~~~~~l~~~~---~~~~Vs~tqf~-~~~~~v~~isWspDG---~~lA 189 (1196)
.|..+..||+|..||.+|..|-+++- -+.|-....+...... ..-+|.+..|. .....|..+.|.|.| ..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 58899999999999999987644332 1334322211111111 11222233333 334578999999875 5776
Q ss_pred EeeccccccCCCCEEEEEEC
Q 000992 190 TLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~ 209 (1196)
+=+ .|+++|+||.
T Consensus 166 -vLt------sdn~lR~y~~ 178 (717)
T PF10168_consen 166 -VLT------SDNTLRLYDI 178 (717)
T ss_pred -EEe------cCCEEEEEec
Confidence 443 4799999999
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.20 E-value=11 Score=44.08 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=81.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEE-EECCCCeEEEe-eeecCcEEEEEECCCCCEEEEEeCCceEEEEec----cCc
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLL-HSVDGNATEVV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH----DWD 148 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~l-w~~~~~~~e~v-g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~----~~d 148 (1196)
.+.+.++.+.|++..+ .++..|.+.. ++..+.....+ ..-...+.++++.|+|+.++.+ ..|.+++-+. .|.
T Consensus 172 ~g~~~~i~~~~~g~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 3578899999998655 4556776654 23222334322 2224679999999999887655 4577654322 233
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccCCCce
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAFMG 225 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~~~~v 225 (1196)
.+. .... .....+..+.|+|+|..++ ++. ++.+ +...+.|+.=... ++.....
T Consensus 250 ~~~---~~~~------------~~~~~l~~v~~~~~~~~~~-~G~-------~G~v-~~S~d~G~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 250 KPI---IPEI------------TNGYGYLDLAYRTPGEIWA-GGG-------NGTL-LVSKDGGKTWEKDPVGEEVPSNF 305 (334)
T ss_pred ccc---CCcc------------ccccceeeEEEcCCCCEEE-EcC-------CCeE-EEeCCCCCCCeECCcCCCCCcce
Confidence 211 0000 0112457899999999888 553 3444 3455445432221 2222345
Q ss_pred eEEEEcCCCCeEEEEec
Q 000992 226 AVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~ 242 (1196)
..+.|..+++.+|+|..
T Consensus 306 ~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 306 YKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEEEeCCCceEEECCC
Confidence 67788888888887754
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=2.7 Score=47.51 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHH
Q 000992 946 RFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKA 1025 (1196)
Q Consensus 946 ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~ 1025 (1196)
.|+.|+.++.+.|. +++|++. |+..++.|.+.......+-.+|+.+..+++|++|...|..
T Consensus 145 ~Y~~A~~l~~~~~~--y~~Ai~a-------f~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~---------- 205 (263)
T PRK10803 145 DYNAAIALVQDKSR--QDDAIVA-------FQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFAS---------- 205 (263)
T ss_pred HHHHHHHHHHhcCC--HHHHHHH-------HHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH----------
Confidence 36666666555444 5655543 3333444534434445555666666666555555544322
Q ss_pred HHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1026 YRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1026 y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++ ..++.+ ....+....++..+...|++.+|..+|.+
T Consensus 206 ---------vv---~~yP~s-~~~~dAl~klg~~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 206 ---------VV---KNYPKS-PKAADAMFKVGVIMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred ---------HH---HHCCCC-cchhHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12 132211 12234455566666667777777777665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=87.67 E-value=18 Score=39.61 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+....++..+...|++++|..++..
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555677777777777777776555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=87.52 E-value=54 Score=36.77 Aligned_cols=139 Identities=15% Similarity=0.074 Sum_probs=76.6
Q ss_pred CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEE
Q 000992 126 PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK 205 (1196)
Q Consensus 126 PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir 205 (1196)
..|+.|++|+.+| |.++... +........ +...|..+.--|+-+.|...+ |+++.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~-~~~~~~~i~---------------~~~~I~ql~vl~~~~~llvLs--------d~~l~ 59 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLS-DPSKPTRIL---------------KLSSITQLSVLPELNLLLVLS--------DGQLY 59 (275)
T ss_pred cCCCEEEEEECCC-EEEEEec-CCccceeEe---------------ecceEEEEEEecccCEEEEEc--------CCccE
Confidence 3578999999998 6554330 011100000 012367788778777666232 48899
Q ss_pred EEECCCCcEEEEec------------cC--CCceeEEE---EcCCCCeEEEEecCCCCCCCCeEEEEeCCC------eeE
Q 000992 206 VWERDSGTLQASSE------------LK--AFMGAVLE---WMPSGANIAAVYDRKSENKCPSIVFYERNG------LER 262 (1196)
Q Consensus 206 VWd~~~G~l~~~~e------------~~--~~~v~sla---wsPdG~~IAs~s~d~~~~~~~~V~~~e~nG------l~~ 262 (1196)
+++...-....... .. ...+...+ -...+..|+.+.. .+|.+|+.++ ...
T Consensus 60 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-------k~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 60 VYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-------KKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred EEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC-------CEEEEEEEECCccccccee
Confidence 99874332222110 11 11223333 2233345555544 3677776543 234
Q ss_pred EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 263 SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 263 ~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+|.++ ..+.+++|. ++.|+++..++ ..+.|..+
T Consensus 133 ke~~lp----~~~~~i~~~--~~~i~v~~~~~----f~~idl~~ 166 (275)
T PF00780_consen 133 KEISLP----DPPSSIAFL--GNKICVGTSKG----FYLIDLNT 166 (275)
T ss_pred EEEEcC----CCcEEEEEe--CCEEEEEeCCc----eEEEecCC
Confidence 555554 358899999 67788888776 77777764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=4.8 Score=51.72 Aligned_cols=87 Identities=10% Similarity=0.031 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC----HHHHH----HHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS----LEKAM----KAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEEL 1060 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~----~~kAl----~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L 1060 (1196)
...+...|+-+...+.+++|...++.+-+ +..|. .+..+.+..++|+..++++ ..+++. .+....+|..|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-AREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-HHHHHHHHHHH
Confidence 45666777888888888888888887743 33443 3445556788888766653 223333 34566789999
Q ss_pred HHcCChHHHHHHHHHhc
Q 000992 1061 QALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1061 ~~~~~~~eAa~i~~~yl 1077 (1196)
.+.|+|++|..+|.+-+
T Consensus 165 ~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 165 DEIGQSEQADACFERLS 181 (694)
T ss_pred HHhcchHHHHHHHHHHH
Confidence 99999999999998844
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=86.64 E-value=25 Score=44.07 Aligned_cols=163 Identities=12% Similarity=0.021 Sum_probs=83.8
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.+.+++.|+||+.+|...+++...++-........ .+. + .....-+|.++|-.=. +. ++
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~-~~~----g------------~~Lt~PS~d~~g~vWt-v~--~g- 402 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARA-LTS----G------------STLTRPSFSPQDWVWT-AG--PG- 402 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecCCCccee-eec----C------------CCccCCcccCCCCEEE-ee--CC-
Confidence 57889999999999999888733221111111111 010 1 1246778888883322 22 10
Q ss_pred cCCCCEEEEEECCCCcEE------EEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEE--
Q 000992 198 SKLHKRLKVWERDSGTLQ------ASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLERSSFD-- 266 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~------~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~-- 266 (1196)
...+.+++-+..+|+.. .......+ .|..+..|+||..+|......+ .....|.--.|+ |.- ..+.
T Consensus 403 -~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g-~~~V~va~V~R~~~G~P-~~L~~~ 479 (573)
T PRK13614 403 -GNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNG-KSRVQVAGIVRNEDGTP-RELTAP 479 (573)
T ss_pred -CCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCC-ccEEEEEEEEeCCCCCe-EEccCc
Confidence 01144553322122211 11122344 3899999999999998764321 001223234553 431 1111
Q ss_pred eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 267 INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 267 l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+.......+.+++|..++++++.+...+....+++-.+
T Consensus 480 ~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v 517 (573)
T PRK13614 480 ITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSV 517 (573)
T ss_pred eecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEe
Confidence 11111357899999999997777654321124444444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=86.63 E-value=69 Score=37.34 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=22.0
Q ss_pred HHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhc
Q 000992 998 DHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL 1042 (1196)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l 1042 (1196)
+.+...++..+|..+-.++.+ ++-+++|.++|+|++|...|.+.
T Consensus 245 ~~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 245 EACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHc
Confidence 444444555555444444444 55555555555555555555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=86.61 E-value=61 Score=36.52 Aligned_cols=184 Identities=11% Similarity=0.093 Sum_probs=104.7
Q ss_pred eeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 23 LQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
-+++.|+.+ +.||-.+. .+.|..+|+ .+++... ...||..+.+. .++ .. +++.......+|..
T Consensus 47 TQGL~~~~~-g~LyESTG~yG~S~l~~~d~--~tg~~~~-~~~l~~~~FgE------Git---~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 47 TQGLEFLDD-GTLYESTGLYGQSSLRKVDL--ETGKVLQ-SVPLPPRYFGE------GIT---IL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEET-TEEEEEECSTTEEEEEEEET--TTSSEEE-EEE-TTT--EE------EEE---EE-TTEEEEEESSSSEE
T ss_pred CccEEecCC-CEEEEeCCCCCcEEEEEEEC--CCCcEEE-EEECCccccce------eEE---EE-CCEEEEEEecCCeE
Confidence 455666543 45665543 446899998 6665422 22344433222 222 22 34566678899999
Q ss_pred EEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 100 LLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 100 ~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.+||.++-+. .... .++.=+.++ .||+.|....+..++..++ .+|+....+.... .+.+| ..+.
T Consensus 113 f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~--~g~pv---------~~LN 178 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD--NGRPV---------SNLN 178 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE--TTEE------------EE
T ss_pred EEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE--CCEEC---------CCcE
Confidence 9999987432 2222 223234454 7899998888888898887 5677766665543 33444 2456
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-----c----------CCCceeEEEEcCCCCeEEEEec
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-----L----------KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-----~----------~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+-|- ||...| =-. . .++.++ -|+.+|+...... + ...--+.|||.|.++.+-.++.
T Consensus 179 ELE~i-~G~IyA-NVW-~----td~I~~-Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYI-NGKIYA-NVW-Q----TDRIVR-IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-TTEEEE-EET-T----SSEEEE-EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEE-cCEEEE-EeC-C----CCeEEE-EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 67775 888887 223 1 244444 4888998877531 0 1234589999998887766654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=86.56 E-value=62 Score=37.44 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=76.2
Q ss_pred CCEEEEEEC----------CCcEEEEECCCC-----eEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 87 KEALIVGTS----------SGLLLLHSVDGN-----ATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 87 ~~~La~as~----------dG~I~lw~~~~~-----~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
...||+|+. .|.|.+++.... +++.+. .++++|.+++-- +|. |+.+.+ ++|.++....+.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEET-TEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeec-CEEEEEEccCcc
Confidence 467777754 299999998773 555432 356888887655 444 665655 478777533332
Q ss_pred -eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEE--EEECCCCc-EEEEec-cCCCc
Q 000992 150 -LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLK--VWERDSGT-LQASSE-LKAFM 224 (1196)
Q Consensus 150 -~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~ir--VWd~~~G~-l~~~~e-~~~~~ 224 (1196)
+........ .-.+.++...+| +++ +|.. .+.+. -|+. ++. +..... ....+
T Consensus 119 ~l~~~~~~~~--------------~~~i~sl~~~~~--~I~-vgD~------~~sv~~~~~~~-~~~~l~~va~d~~~~~ 174 (321)
T PF03178_consen 119 TLLKKAFYDS--------------PFYITSLSVFKN--YIL-VGDA------MKSVSLLRYDE-ENNKLILVARDYQPRW 174 (321)
T ss_dssp SEEEEEEE-B--------------SSSEEEEEEETT--EEE-EEES------SSSEEEEEEET-TTE-EEEEEEESS-BE
T ss_pred cchhhheecc--------------eEEEEEEecccc--EEE-EEEc------ccCEEEEEEEc-cCCEEEEEEecCCCcc
Confidence 221111111 124567777644 777 6753 23344 4576 444 443332 23456
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+.++.+=+|++.++++..+ ..|.++..+
T Consensus 175 v~~~~~l~d~~~~i~~D~~------gnl~~l~~~ 202 (321)
T PF03178_consen 175 VTAAEFLVDEDTIIVGDKD------GNLFVLRYN 202 (321)
T ss_dssp EEEEEEE-SSSEEEEEETT------SEEEEEEE-
T ss_pred EEEEEEecCCcEEEEEcCC------CeEEEEEEC
Confidence 7788888787766666553 356666543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=86.44 E-value=80 Score=37.68 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=41.6
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~ 109 (1196)
+++.||+++.++.++.+|. .+++..|+.. ++....+ ..+. .+..+.+++.+|.|.-+|..+|+.
T Consensus 119 ~~~~v~v~~~~g~l~ald~--~tG~~~W~~~-~~~~~~s------sP~v------~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNA--EDGEVAWQTK-VAGEALS------RPVV------SDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCCccccc-CCCceec------CCEE------ECCEEEEECCCCEEEEEEccCCCE
Confidence 4678999988888999999 7787777754 1211110 1111 134566677788888888877654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.38 E-value=33 Score=42.25 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh-c-----C--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGL-L-----K--LGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~-l-----~--~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
-.+...|+|.+|++....+. .++++ + + .-++++..+-..+|-.|..+|+-+||-.+|...+
T Consensus 183 c~~i~~gky~qA~elL~kA~------~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 183 CILIENGKYNQAIELLEKAL------RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHhcccHHHHHHHHHHHH------HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34455677777777765542 22221 0 0 0134566777888999999999999999998843
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=86.29 E-value=9.7 Score=48.76 Aligned_cols=254 Identities=20% Similarity=0.187 Sum_probs=124.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCchhhhhhhhhhcCCccHHHHHHHHHHHHhhccc-----CCC-----CC-CCC------
Q 000992 811 KVSSVLLAIRKALEEKVPESPSRELCILTTLARSDPPALEEALERIKIIRETELL-----GSD-----EP-RRM------ 873 (1196)
Q Consensus 811 KVn~iC~a~~~~l~~~~~~~~~~~~~ilT~~~~~~pp~le~aL~~i~~l~~~~~~-----~~~-----~~-~~~------ 873 (1196)
-+..||+.++..|..- ... +.-+|--|=.-+-|.+..+|+.+-+..-..+. .+. +. +-+
T Consensus 112 ~l~~l~~~L~~Ela~~--~~p--l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi 187 (894)
T COG2909 112 SLESLLSSLLNELASY--EGP--LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEI 187 (894)
T ss_pred cHHHHHHHHHHHHHhh--cCc--eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence 4557788887777542 111 22234555555566677777665433100000 000 00 000
Q ss_pred C----hhhHHHHHHHHHhhc-------ChHHHHHHHHhccC-hhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHH
Q 000992 874 S----YPSAEEALKHLLWLA-------DSEAVYEAALGLYD-LNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTID 941 (1196)
Q Consensus 874 ~----~~~a~~al~~l~~L~-------d~~~Ly~~ALg~yD-~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id 941 (1196)
+ .-+.||+-.++--.. |.+.||+..=|=-= +.|+.+.++ +-+|+| .++..|.-.+.....|..+
T Consensus 188 ~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~--~~~~~~--q~~~~LsG~~~~l~dYL~e 263 (894)
T COG2909 188 GSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALR--NNTSAE--QSLRGLSGAASHLSDYLVE 263 (894)
T ss_pred ChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHcc--CCCcHH--HHhhhccchHHHHHHHHHH
Confidence 0 114566666655443 56666664322211 344544444 457776 5555444434455555555
Q ss_pred HHhhCHHHHHHHHHH-c---------------CCCcHHHHHHHH-----------------HHHhcChHHHHhhc---CC
Q 000992 942 LRLQRFENALKHIVS-M---------------GDSYHADCLNLM-----------------KKYAQLFPLGLKLI---TD 985 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~-~---------------g~~~~~~ale~~-----------------~~~~~ly~~AL~L~---~d 985 (1196)
.-|.+-+-.++.|.- + |.+.-..-++-. +=| .||.+.|.-- ..
T Consensus 264 eVld~Lp~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH-~LFaeFL~~r~~~~~ 342 (894)
T COG2909 264 EVLDRLPPELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYH-HLFAEFLRQRLQREL 342 (894)
T ss_pred HHHhcCCHHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehh-HHHHHHHHhhhcccc
Confidence 545444444333321 1 221122333333 334 4444444332 24
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcC-------CHHHHHHHHhhcCCCHHHH---HHHHHH
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASG-------NWSGVLTVAGLLKLGKDEV---AKLAQE 1055 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g-------~w~~al~la~~l~~~~~~~---~~l~~~ 1055 (1196)
+.+.+++...=+.|++..+...+|..+-.+||++++|.+...+.+ +....+.+-..+ +.+-+ ..+..-
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l--P~~~l~~~P~Lvll 420 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL--PAELLASTPRLVLL 420 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC--CHHHHhhCchHHHH
Confidence 456677777777777777777777777777777777777766663 111111111122 11111 234444
Q ss_pred HHHHHHHcCChHHHHHHHHH
Q 000992 1056 LCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1056 la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.|=.+...++|.||..+..+
T Consensus 421 ~aW~~~s~~r~~ea~~li~~ 440 (894)
T COG2909 421 QAWLLASQHRLAEAETLIAR 440 (894)
T ss_pred HHHHHHHccChHHHHHHHHH
Confidence 45556667777777776544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=85.91 E-value=67 Score=36.25 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=99.5
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeEEEeeeecC-----cEEEEEECCCCCEEEEEeCCce
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEG-----GVRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~lw~~~~~~~e~vg~~~~-----~I~~~awSPDg~~LA~~s~d~t 139 (1196)
+..+|..+....-++.|..||..+-+.+.-| .|+.+|+.++++...-..+. ||+-+ ++++....=.+++
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~----~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL----GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE----TTEEEEEESSSSE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE----CCEEEEEEecCCe
Confidence 4555666667788999999999888888888 57779999986542222222 23322 2222222223455
Q ss_pred EEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 140 ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 140 V~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
..++++ .++.+.+.....+. +.++ .||+.|. +|. +..++..+|+.+-+...+.
T Consensus 112 ~f~yd~~tl~~~~~~~y~~EG-----------------WGLt--~dg~~Li-~SD------GS~~L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYPGEG-----------------WGLT--SDGKRLI-MSD------GSSRLYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEEETTTTEEEEEEE-SSS-------------------EEE--ECSSCEE-EE-------SSSEEEEE-TTT-SEEEEE
T ss_pred EEEEccccceEEEEEecCCcc-----------------eEEE--cCCCEEE-EEC------CccceEEECCcccceEEEE
Confidence 555553 35555444433221 5666 6788787 552 4578899998666555543
Q ss_pred ccCC-----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEec-------c-----CCCCcEEEEEE
Q 000992 219 ELKA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDIN-------E-----QIDSTVELLKW 280 (1196)
Q Consensus 219 e~~~-----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~-------~-----~~~~~V~~laW 280 (1196)
.-.+ ...+-+-|- +|.+.|=. .. ...|...+ .+|...+.+.+. . +..+-.+.|||
T Consensus 166 ~V~~~g~pv~~LNELE~i-~G~IyANV-W~-----td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 166 QVTDNGRPVSNLNELEYI-NGKIYANV-WQ-----TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp E-EETTEE---EEEEEEE-TTEEEEEE-TT-----SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred EEEECCEECCCcEeEEEE-cCEEEEEe-CC-----CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 2111 123445553 56555543 21 12344444 456666655443 0 11245788999
Q ss_pred ccCCCeeEEEEc
Q 000992 281 NCMSDLLAAVVR 292 (1196)
Q Consensus 281 SpDg~~LAs~~~ 292 (1196)
.|+++.|-+.+.
T Consensus 239 d~~~~~l~vTGK 250 (264)
T PF05096_consen 239 DPETDRLFVTGK 250 (264)
T ss_dssp ETTTTEEEEEET
T ss_pred eCCCCEEEEEeC
Confidence 999887766543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.88 E-value=2.4 Score=46.05 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=58.5
Q ss_pred cCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-
Q 000992 30 IEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA- 108 (1196)
Q Consensus 30 ~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~- 108 (1196)
.-+..|++++.++.|+.|..|.+..-. . +....+ ......|.-.-++...|++..+|.|+.|+..-++
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~--d-------~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHS--D-------RVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHH--H-------hhhccc--ccceeccccccccceeEEeccCCceeeeccccCce
Confidence 346789999999988888874111111 0 111111 1123334444556688999999999999997655
Q ss_pred EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEE
Q 000992 109 TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1196)
Q Consensus 109 ~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~ 143 (1196)
+..+|+|.. -+++.+++.+.++.|.+|
T Consensus 137 ~g~~g~h~~--------~~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 137 LGYVGQHNF--------ESGEELIVVGSDEFLKIA 163 (238)
T ss_pred eeeeccccC--------CCcceeEEecCCceEEee
Confidence 457787763 345566666666666665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 3e-08
Identities = 92/623 (14%), Positives = 175/623 (28%), Gaps = 180/623 (28%)
Query: 640 DISDILHGELALKYENFTHVGNRRKEENISYINIW---ERGAKVIGVLHGDEAAVILQTN 696
D+ D+ L E H+ + + + W + +++ + +L+ N
Sbjct: 37 DVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRIN 90
Query: 697 RGNL------ECMYP--RKLVLTSIVNALIQG----------------RFRDALVMVRRH 732
L E P + + L + R AL+ +R
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 733 RINFNVIVDH----CG--WQAF--LQSASEFVRQVNNLSYITEFVCAINNENITETLYKK 784
+ NV++ G W A S + + ++ + N N ET+ +
Sbjct: 151 K---NVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEM 201
Query: 785 FQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKV-PESPSRELCIL----- 838
Q L + D ++ ++ S+ +R+ L+ K L +L
Sbjct: 202 LQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENC----LLVLLNVQN 255
Query: 839 ---------------TTLARSDPPALEEALE-RIKIIRETELLGSDEPRRM--------- 873
TT + L A I + + L DE + +
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 874 -SYPSAEEALK-HLLWLA-------DSEAVYE--AALGLYDLNLAAIVALNSQRDPKEFL 922
P E L + L+ D A ++ + L +LN +P E+
Sbjct: 316 QDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYR 372
Query: 923 PYLQELESMPP-------LLMRY-------TIDLRLQRFEN---ALKHIVSMGDSYHADC 965
L PP LL + + + + K S +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 966 LNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFE------DAATTYFCCSSL 1019
L L K + L ++ DH + K F+ YF S +
Sbjct: 433 LELKVKLENEYALHRSIV--------------DHYNIPKTFDSDDLIPPYLDQYF-YSHI 477
Query: 1020 EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079
+ L + E L + + + + L + A + G
Sbjct: 478 -----GHH-------------LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 1080 VTNGISLLIDARDWEEALRVAFMHRREDLITKVKHASLECASSLIGEYKEGLEKVGKYLT 1139
+ N L + + + I E L+ + L K+ + L
Sbjct: 520 ILN---TLQQLKFY------------KPYICD-NDPKYE---RLVNAILDFLPKIEENLI 560
Query: 1140 RYLAVRQRRLLLVAKLQSEDRSM 1162
+ LL +A L +ED ++
Sbjct: 561 CS---KYTDLLRIA-LMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-05
Identities = 61/446 (13%), Positives = 119/446 (26%), Gaps = 162/446 (36%)
Query: 803 DFKASE----CNKVSSVLL-AIRKALEEK-VPESPSRELCILTTLARSDPPALEEALERI 856
DF+ E + SV A + K V + P IL+ E I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS---ILSK-------------EEI 51
Query: 857 KIIRETELLGSDEPRRMSYPSAEEALKHLLW--LADSEAVYEAALGL-----YDLNLAAI 909
++ S A L W L+ E + + + Y ++ I
Sbjct: 52 D-----HIIMS--------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 910 VALNSQR--DPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLN 967
Q + ++ L + + +Y + RLQ + L+ L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-RLQPYLK-LR-----------QALL 145
Query: 968 LMKKYAQLFPLGL----KLITDPAKMEQVL--EAWADHLSDVKC-FEDAATTYFCCSSLE 1020
++ + G+ K + + + V+C +
Sbjct: 146 ELRPAKNVLIDGVLGSGK---------TWVALDVCLSY--KVQCKMDF------------ 182
Query: 1021 KAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV 1080
K + W L L + + E LQ L +I ++
Sbjct: 183 ---KIF-----W---------LNLKNCNSPE---TVLEMLQKL-----LYQIDPNWTSRS 217
Query: 1081 TNGISLLIDARDWEEALRVAFMHRR--------ED----------------LIT------ 1110
+ ++ + + LR + + L+T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 1111 -------KVKHASLECASSLIGEYKEGLEKVGKYLT--------RYLAVRQRRLLLVAKL 1155
H SL+ S + E + KYL L RRL ++A+
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 1156 QSEDRSMND----LDDDTVSETSSTF 1177
+ + D ++ D ++ +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESS 362
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-04
Identities = 31/219 (14%), Positives = 68/219 (31%), Gaps = 42/219 (19%)
Query: 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL--MEKEAL 90
NRL N I + + + I+++ + I + E
Sbjct: 95 NRLLLLYPGNQITILDSKTNK------------VLREIEVDSANEIIYMYGHNEVNTEYF 142
Query: 91 IVGTSSGLLLLHSVDGNATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148
I + G + S + ++ +V + + D LL + + G + V ++
Sbjct: 143 IWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV----YN 198
Query: 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVW- 207
L + ++ + F V E F + +G + + + + +
Sbjct: 199 L---SSPDQASSRFPVDEEAKIKEVKF-AD-----NGYWMVVECD--------QTVVCFD 241
Query: 208 -ERDSGTLQASSELKAFMGA---VLEWMPSGANIAAVYD 242
+D GTL + + SG N+ A +
Sbjct: 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1196 | |||
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.98 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.98 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.95 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.93 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.92 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.92 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.92 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.91 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.9 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.89 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.88 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.88 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.88 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.88 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.88 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.88 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.88 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.87 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.86 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.85 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.82 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.82 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.8 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.76 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.73 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.72 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.72 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.72 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.72 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.71 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.69 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.67 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.66 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.66 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.64 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.62 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.61 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.6 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.58 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.54 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.54 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.53 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.52 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.51 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.49 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.45 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.44 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.39 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.38 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.38 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.38 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.38 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.38 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.37 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.33 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.33 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.29 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.27 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.23 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.23 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.22 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.21 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.18 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.11 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.09 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.07 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.07 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.05 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.05 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.02 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.0 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.0 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.99 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.96 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.96 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.92 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.92 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.91 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.89 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.89 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.85 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.84 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.83 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.76 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.73 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.72 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.48 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.43 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.43 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.43 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.42 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.4 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.26 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 98.25 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.18 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.15 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.1 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.05 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.04 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.03 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.99 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.96 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.92 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.89 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.84 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.81 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.79 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.75 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.72 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.69 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.68 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.67 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.64 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.62 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.62 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.6 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.58 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.57 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.56 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 97.56 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.55 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 97.54 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.51 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.49 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 97.48 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.47 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.42 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.4 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.38 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.36 | |
| 2pm7_A | 399 | Protein WEB1, protein transport protein SEC31; bet | 97.31 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.3 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.3 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 97.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.28 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 97.27 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 97.27 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.23 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 97.2 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 97.2 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 97.18 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.07 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.06 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 97.04 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 97.04 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.0 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.0 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 96.99 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 96.98 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.96 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.95 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 96.94 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.93 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 96.9 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 96.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 96.87 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 96.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 96.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 96.82 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.79 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.78 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.78 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 96.77 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.73 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 96.73 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.73 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.73 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 96.71 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 96.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 96.65 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 96.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 96.62 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.6 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 96.6 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.58 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.58 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.54 | |
| 2pm7_A | 399 | Protein WEB1, protein transport protein SEC31; bet | 96.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.43 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.43 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 96.39 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 96.35 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 96.34 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.33 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 96.32 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 96.3 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 96.23 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 96.21 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.19 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 96.18 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.18 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.17 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 96.11 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.11 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.07 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.01 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.01 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.93 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 95.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 95.86 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.83 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 95.82 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.79 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 95.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 95.77 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 95.7 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 95.64 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.64 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 95.62 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.61 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.61 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.59 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.52 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.5 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 95.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 95.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 95.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.4 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.39 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 95.39 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.35 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 95.25 | |
| 3mzk_B | 441 | Protein transport protein SEC16; alpha-helical-sta | 95.19 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.18 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 95.17 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 95.07 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 95.01 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.96 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 94.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 94.89 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 94.87 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 94.85 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 94.78 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.59 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 94.41 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 94.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 94.32 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.25 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 94.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 93.91 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 93.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 93.75 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 93.72 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 93.57 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 93.5 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 93.48 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 93.36 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 93.3 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 93.16 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 93.1 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 92.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 92.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 92.84 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 92.8 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 92.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 92.56 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 92.44 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 92.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 92.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 92.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 92.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 92.18 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 92.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 91.97 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 91.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 91.84 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 91.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 91.76 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 91.75 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 91.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.27 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 91.27 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 91.0 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 90.94 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 90.94 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 90.65 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 90.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 90.33 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 90.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 89.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 89.87 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 89.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 89.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 89.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 89.65 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 89.47 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 89.41 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 89.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 88.86 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 88.73 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 88.62 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 88.59 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 88.59 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 88.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 88.07 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 88.06 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 88.05 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 87.96 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 87.9 | |
| 3mzk_B | 441 | Protein transport protein SEC16; alpha-helical-sta | 87.89 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 87.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 87.16 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 87.12 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 87.05 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 86.84 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 86.82 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 86.59 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 86.29 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 86.15 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 86.11 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 85.89 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 85.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 84.93 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 84.4 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 84.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 84.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 84.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 84.11 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 83.95 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 83.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 83.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 83.23 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 83.14 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 83.14 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 82.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 82.77 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 82.57 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.54 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 82.46 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 81.52 | |
| 4a9v_A | 592 | PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona | 81.51 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 81.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 81.25 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 80.76 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 80.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 80.59 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 80.46 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 80.35 | |
| 3zwu_A | 592 | Alkaline phosphatase PHOX; hydrolase, beta-propell | 80.34 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 80.23 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 80.01 |
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=445.07 Aligned_cols=702 Identities=13% Similarity=0.087 Sum_probs=452.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.++.|..|+. .++.. +.+ +.++ .+.|.+++|+|+++.|++++.||+|++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNY--ETQVE---VRS----IQVT----ETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEEC--CCCce---EEE----EecC----CCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 7999999999999999999999999998 44432 111 3333 368999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC--ceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~--d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||..+++. .....|.+.|.+++|||||+.||+++.||+|++|+..- .... .+.+|...+.+
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------------~~~~~~~~v~~ 145 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ----------------TFEGHEHFVMC 145 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE----------------EEECCSSCEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE----------------EEcCCCCcEEE
Confidence 99987654 45566789999999999999999999999999997431 1111 12245677899
Q ss_pred EEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEcC--CCCeEEEEecCCCCCCCCeEEE
Q 000992 179 ISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 179 isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slawsP--dG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
++|+| ||.+|+ +++ .+++|++||..++........+ ...+..++|+| +|++|++++.+ ..|.+
T Consensus 146 ~~~~p~~~~~l~-~~~------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~~ 212 (814)
T 3mkq_A 146 VAFNPKDPSTFA-SGC------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD------LTIKI 212 (814)
T ss_dssp EEEETTEEEEEE-EEE------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT------SEEEE
T ss_pred EEEEcCCCCEEE-EEe------CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC------CEEEE
Confidence 99999 999999 565 4689999998777776666544 47789999999 99999999885 47999
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
|+.. |.... .+.. +...|..++|+|||++|++++.|+ +|++|+..++.. .+.+..+......+.|+|++..
T Consensus 213 ~d~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 213 WDYQTKSCVA--TLEG-HMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYKV--EKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp EETTTTEEEE--EEEC-CSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCSE--EEEECCSSSSEEEEEECTTCGG
T ss_pred EECCCCcEEE--EEcC-CCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCcE--EEEeecCCCcEEEEEEccCCCc
Confidence 9954 43333 2333 356799999999999999999999 999999987642 3344443334488999999876
Q ss_pred e-EEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE------------eecc-ccCC----CCCceeeee-cCCCCE
Q 000992 334 Q-LICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV------------TPLS-LSLM----PPPMYLFSL-KFPTAV 394 (1196)
Q Consensus 334 ~-L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l------------t~l~-~~~v----pppm~~~~l-~~~~~V 394 (1196)
. +.... ++.+.. |.............+|..+.. ..++ .+.+ +.+.....+ .+...+
T Consensus 285 ~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (814)
T 3mkq_A 285 NYIASGF-DNGFTV----LSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359 (814)
T ss_dssp GEEEEEE-TTEEEE----EECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCC
T ss_pred eEEEEEe-CCCEEE----EEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCC
Confidence 4 44444 454433 332211000111112221111 1111 0111 111111222 245678
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceE
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~ 474 (1196)
.+++|||+| +.+|+++ ||.+.+|+....... +.+.+..++|+|+|.++|++..+ ..+.
T Consensus 360 ~~~~~spdg--~~la~~~-~~~~~i~~~~~~~~~-----------------~~~~i~~~~~spdg~~la~~~~~--g~v~ 417 (814)
T 3mkq_A 360 QSLAHSPNG--RFVTVVG-DGEYVIYTALAWRNK-----------------AFGKCQDFVWGPDSNSYALIDET--GQIK 417 (814)
T ss_dssp SEEEECTTS--SEEEEEE-TTEEEEEETTTTEEE-----------------EEEECSEEEECTTSSCEEEECTT--CCEE
T ss_pred ceeEECCCC--CEEEEec-CCEEEEEECcccccc-----------------CCCceEEEEEeCCCCeEEEEeCC--CcEE
Confidence 999999999 8999887 899999997532110 12357789999999999987654 4566
Q ss_pred EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCC---ceEEEEeeCCeEEEEe
Q 000992 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKK---YSAFLQFHGGKISEYM 551 (1196)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~dG~v~~~~ 551 (1196)
+|..- ....+.+..+.+++ ++ ..++....||+|..|+
T Consensus 418 l~~~~---------------------------------------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d 457 (814)
T 3mkq_A 418 YYKNF---------------------------------------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFD 457 (814)
T ss_dssp EEETT---------------------------------------EECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEEC
T ss_pred EEECC---------------------------------------CCccceEEcCCcCc-cceecceEEEEecCCEEEEEE
Confidence 66421 01122334445555 44 4777778999999997
Q ss_pred ccccccCCCCCCCCCCCCCCCCceeEEEecCCCCCccEEEEEc----CCCceE-e--C--------------------C-
Q 000992 552 SRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPLKPLLFGLD----DGGRLH-V--S--------------------G- 603 (1196)
Q Consensus 552 ~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~~gL~----~~~~L~-~--n--------------------~- 603 (1196)
.... .....++..+. .+...++| +.++++=. .....| + | +
T Consensus 458 ~~~~-------~~~~~~~~~~~---~v~~s~dg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (814)
T 3mkq_A 458 WDNG-------TLVRRIDVNAK---DVIWSDNG--ELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEA 525 (814)
T ss_dssp TTTC-------CEEEEESSCEE---EEEECTTS--SEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTT
T ss_pred CCcC-------cEEEEEecCCC---EEEEcCCC--CEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhh
Confidence 5421 01111222222 11122233 33333210 112222 1 0 0
Q ss_pred -E---EeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCE
Q 000992 604 -K---IVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAK 679 (1196)
Q Consensus 604 -~---~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~ 679 (1196)
. .+...++|....++ .++|+|..+.+.++...+. ..++.++..-.
T Consensus 526 ~~~~~~~~~~i~s~~w~~~-------~~i~~t~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 574 (814)
T 3mkq_A 526 FDVLYELSESITSGKWVGD-------VFIFTTATNRLNYFVGGKT------------------------YNLAHYTKEMY 574 (814)
T ss_dssp EEEEEEECSCCSEEEEETT-------EEEEECTTSEEEEEETTEE------------------------EEEEECSSCCE
T ss_pred eeeeeEeccEEEeeEEeCC-------EEEEEcCCCeEEEEeCCee------------------------EEEEECCccEE
Confidence 1 12346777777777 8999887677776532110 12234444445
Q ss_pred EEEEecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHHHHHhccccceeeeecccHHHHHHhHHHHHHhc
Q 000992 680 VIGVLHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALVMVRRHRINFNVIVDHCGWQAFLQSASEFVRQV 759 (1196)
Q Consensus 680 iV~~~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv 759 (1196)
++...|+. .+++++...|++..+. -+ +..+.
T Consensus 575 ~~~~~~~~-~~l~~~d~~~~~~~~~-------------------------------------l~-~~~~~---------- 605 (814)
T 3mkq_A 575 LLGYLARD-NKVYLADREVHVYGYE-------------------------------------IS-LEVLE---------- 605 (814)
T ss_dssp EEEEEGGG-TEEEEECTTCCEEEEE-------------------------------------CC-HHHHH----------
T ss_pred EEEEEecC-CEEEEEcCCCCEEEEE-------------------------------------EC-cHHHH----------
Confidence 66666776 7888877777766544 01 10000
Q ss_pred CCcchHHHHHhhccCCcccccccccccccCCCccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCCCCchhhhhh
Q 000992 760 NNLSYITEFVCAINNENITETLYKKFQFLSLPCREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILT 839 (1196)
Q Consensus 760 ~~~~~l~lFls~L~~edvt~t~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~~~~~~~ilT 839 (1196)
+..++..
T Consensus 606 -----------------------------------------------------------~~~~~~~-------------- 612 (814)
T 3mkq_A 606 -----------------------------------------------------------FQTLTLR-------------- 612 (814)
T ss_dssp -----------------------------------------------------------HHHHHHT--------------
T ss_pred -----------------------------------------------------------HhHHHHh--------------
Confidence 0000000
Q ss_pred hhhhcCCccHHHHHH-HHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCc
Q 000992 840 TLARSDPPALEEALE-RIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDP 918 (1196)
Q Consensus 840 ~~~~~~pp~le~aL~-~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~Dp 918 (1196)
-+++.|+. ++.. .+.
T Consensus 613 -------~~~~~a~~~~l~~---------------------------------------------------------i~~ 628 (814)
T 3mkq_A 613 -------GEIEEAIENVLPN---------------------------------------------------------VEG 628 (814)
T ss_dssp -------TCHHHHHHHTGGG---------------------------------------------------------CCC
T ss_pred -------CCHHHHHHHHHhc---------------------------------------------------------CCc
Confidence 00111211 1000 000
Q ss_pred chhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHH
Q 000992 919 KEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWAD 998 (1196)
Q Consensus 919 keYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~ 998 (1196)
.+++ +++ .+|. .-++.+++|++.... .....++.... +.|++|++++ .
T Consensus 629 ~~~~---~~~-------~~~l--~~~~~~~~a~~~~~~-----~~~~f~~~l~~-~~~~~A~~~~--------------~ 676 (814)
T 3mkq_A 629 KDSL---TKI-------ARFL--EGQEYYEEALNISPD-----QDQKFELALKV-GQLTLARDLL--------------T 676 (814)
T ss_dssp HHHH---HHH-------HHHH--HHTTCHHHHHHHCCC-----HHHHHHHHHHH-TCHHHHHHHH--------------T
T ss_pred hHHH---HHH-------HHHH--HhCCChHHheecCCC-----cchheehhhhc-CCHHHHHHHH--------------H
Confidence 1111 111 1122 236677887765421 34445666677 8888888876 2
Q ss_pred HHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
.+.+...|++++.++.+.|+++.|.+||.++++|+.+..+....+ +. +...++++.....|++..|..+|++ +|
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~-~~----~~~~~~~~~a~~~~~~~~A~~~~~~-~g 750 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN-NK----EGLVTLAKDAETTGKFNLAFNAYWI-AG 750 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT-CH----HHHHHHHHHHHHTTCHHHHHHHHHH-HT
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC-CH----HHHHHHHHHHHHcCchHHHHHHHHH-cC
Confidence 222335778888888888888888888888888888888877654 33 3455678888889999999999988 99
Q ss_pred CHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000992 1079 DVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1079 d~~~Ai~~y~~~~~w~eA~rla~~~~~~d 1107 (1196)
|+++|+++|++.++|++|+.||++|...+
T Consensus 751 ~~~~a~~~~~~~~~~~~A~~lA~~~~~~~ 779 (814)
T 3mkq_A 751 DIQGAKDLLIKSQRFSEAAFLGSTYGLGD 779 (814)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHcCChHHHHHHHHHhCCCh
Confidence 99999999999999999999999998554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=390.55 Aligned_cols=435 Identities=11% Similarity=0.074 Sum_probs=310.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
....++|+|+++.|++++++ .++.|++ ...... .. +.+| .+.|.+++|+|||+.||+|+.||+|+|
T Consensus 20 ~~~~~~~spdg~~l~~~~~~-~v~l~~~--~~~~~~-~~------~~~h----~~~v~~~~~spdg~~lasg~~d~~v~l 85 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNGT-SVYTVPV--GSLTDT-EI------YTEH----SHQTTVAKTSPSGYYCASGDVHGNVRI 85 (611)
T ss_dssp CCCCCEECTTSSEEEEEETT-EEEEEET--TCSSCC-EE------ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ceeEEeeCCCCCEEEeCCCC-EEEEecC--CCcccC-eE------ecCC----CCceEEEEECCCCcEEEEEeCCCCEEE
Confidence 67888999999999998864 6999998 433321 11 4444 357999999999999999999999999
Q ss_pred EECCCC--eE-EEeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGN--AT-EVVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~--~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||..++ .. .....|.+.|.+++|||||+.||+++.+ ++|.+| +. +.... .+.+|..
T Consensus 86 Wd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w----d~--~~~~~-----------~l~gh~~ 148 (611)
T 1nr0_A 86 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF----DT--GTSNG-----------NLTGQAR 148 (611)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET----TT--CCBCB-----------CCCCCSS
T ss_pred eECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe----eC--CCCcc-----------eecCCCC
Confidence 998643 22 2445578999999999999999999875 367664 32 11111 2336778
Q ss_pred CeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~ 253 (1196)
.|.+++|+|||.+ || +++ .|++|++||..++++..++.+|.+.|.+++|+|||++||+++.|+ +|+
T Consensus 149 ~v~~v~f~p~~~~~l~-s~s------~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~------~i~ 215 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRII-SGS------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG------TIV 215 (611)
T ss_dssp CEEEEEECSSSSCEEE-EEE------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEE
T ss_pred CceEEEECCCCCeEEE-EEe------CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC------cEE
Confidence 8999999999985 77 565 479999999888999999999999999999999999999999874 699
Q ss_pred EEe-CCCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE----------------
Q 000992 254 FYE-RNGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK---------------- 312 (1196)
Q Consensus 254 ~~e-~nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk---------------- 312 (1196)
+|+ .+|.....+.-. ..+.+.|.+++|||||++||+++.|+ +|+||++.+......
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~---~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK---TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC---eEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 999 456544432100 03567899999999999999999999 999999987654211
Q ss_pred -------------------------EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEE-----------------
Q 000992 313 -------------------------YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFI----------------- 350 (1196)
Q Consensus 313 -------------------------q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~----------------- 350 (1196)
+.+..|......+.|+|++.. |..++.+|.+..++..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~ 371 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMIT 371 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCceeeecccCCcceEE
Confidence 111112222378899998864 6666666666543310
Q ss_pred ---------------------E----------------------------------------------------------
Q 000992 351 ---------------------W---------------------------------------------------------- 351 (1196)
Q Consensus 351 ---------------------~---------------------------------------------------------- 351 (1196)
|
T Consensus 372 ~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v 451 (611)
T 1nr0_A 372 GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS 451 (611)
T ss_dssp EEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred EEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCc
Confidence 0
Q ss_pred -eee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC-CCc
Q 000992 352 -TTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA-PDM 427 (1196)
Q Consensus 352 -~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~-~~~ 427 (1196)
.++ |++..++....+++|++|++..... .......|+..|++|+||||| +.||+++.|++|++|+..+ ...
T Consensus 452 ~~va~spdg~~lasgs~D~~v~lwd~~~~~~---~~~~~~~h~~~v~~v~fspdg--~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASV---SEVKTIVHPAEITSVAFSNNG--AFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEE---EEEEEEECSSCEEEEEECTTS--SEEEEEETTSCEEEEEGGGTTEE
T ss_pred eEEEEeCCCCEEEEeCCCCeEEEEEccCCce---eeeeccCCCCceEEEEECCCC--CEEEEEcCCCCEEEEEcCCCCce
Confidence 011 1122223333445667776643211 112335688999999999999 9999999999999999874 211
Q ss_pred cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhccccccccccc
Q 000992 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLT 507 (1196)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (1196)
... .....|...|..++|+|||++||+++.+ .++.+|++....
T Consensus 527 ~~~----------~~~~~H~~~V~~v~fspdg~~lasgs~D--~~v~lW~~~~~~------------------------- 569 (611)
T 1nr0_A 527 AHT----------NSWTFHTAKVACVSWSPDNVRLATGSLD--NSVIVWNMNKPS------------------------- 569 (611)
T ss_dssp SCC----------CCCCCCSSCEEEEEECTTSSEEEEEETT--SCEEEEETTCTT-------------------------
T ss_pred eee----------eeeeecccceeEEEECCCCCEEEEEECC--CcEEEEECCCcc-------------------------
Confidence 100 0011256789999999999999999876 689999873100
Q ss_pred ccccceeeeeeecc-CCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 508 CAGWHAKVSTQIPL-EGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 508 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
... ......+ .+.|.++.+++ ++. ++....||+|..|+.
T Consensus 570 ---~~~-~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 570 ---DHP-IIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp ---SCC-EEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred ---ccc-chhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEec
Confidence 000 0112234 57788998888 666 888999999999963
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=376.34 Aligned_cols=438 Identities=14% Similarity=0.139 Sum_probs=332.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+|+..|++++.|+.|..||. ..+. +.+ +.+| .+.|.+++|+|||+.||+++.||+|++
T Consensus 18 ~V~~~a~spdg~~las~~~d~~v~iWd~--~~~~----~~~----l~gh----~~~V~~l~fspdg~~las~~~d~~i~v 83 (577)
T 2ymu_A 18 SVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL----LQT----LTGH----SSSVWGVAFSPDGQTIASASDDKTVKL 83 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT--TSCE----EEE----EECC----SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEEC--CCCE----EEE----EeCC----CCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 7999999999999999999999999997 3322 222 4555 368999999999999999999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccccc--------Cccccc--------
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELA--------EGFDVH-------- 165 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~--------~~~~Vs-------- 165 (1196)
||..+..+..+..|.+.|.+++|||||++||+++.|+++++|+...........+... +...+.
T Consensus 84 Wd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 84 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp EETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EECCCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 9988776666666789999999999999999999999999998654443322211111 011110
Q ss_pred ---------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 166 ---------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 166 ---------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
......+...+..+.|+|||++|+ +++ .+++|++||. +|++..+..+|.+.+.+++|+|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~ 235 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 235 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEE-EEE------TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEE-EEc------CCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCE
Confidence 011225778899999999999999 565 4689999998 99999999999999999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~ 316 (1196)
|++++.+. .|++|+.+|..... +.. +...|.+++|+|||+.|++++.|+ +|++|+.... +.+.+.
T Consensus 236 l~~~~~d~------~i~~w~~~~~~~~~--~~~-~~~~v~~v~~~~d~~~l~~~~~d~---~i~~w~~~~~---~~~~~~ 300 (577)
T 2ymu_A 236 IASASDDK------TVKLWNRNGQLLQT--LTG-HSSSVNGVAFRPDGQTIASASDDK---TVKLWNRNGQ---LLQTLT 300 (577)
T ss_dssp EEEEETTS------CEEEECTTSCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC---EEEEEC
T ss_pred EEEEeCCC------EEEEEeCCCCEEEE--Eec-CCCCEEEEEEcCCCCEEEEEeCCC---EEEEEeCCCc---EEEEEe
Confidence 99999864 69999998865443 333 356899999999999999999999 9999997653 234444
Q ss_pred EecCCcEEEEEccCCCceEEEEecCCcEEEEEE--------------EEeee--cCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 317 YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF--------------IWTTA--VMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 317 ~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~--------------~~~~~--~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
.+......+.|+|++.. +..++.+|.+..++. ++.++ +++..++...++..+++|+....
T Consensus 301 ~h~~~v~~~~~~~~~~~-l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~--- 376 (577)
T 2ymu_A 301 GHSSSVWGVAFSPDGQT-IASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--- 376 (577)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC---
T ss_pred cCCCCeEEEEECCCCCE-EEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC---
Confidence 44444488999998865 667777777765431 11122 33344555566778888875321
Q ss_pred CCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC
Q 000992 381 PPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 381 ppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
...++ .|...|.+++|+||| +.||+++.|++|++|+... .....+. .+...+..++|+||+
T Consensus 377 ---~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~~~-~~~~~~~------------~~~~~v~~~~~s~d~ 438 (577)
T 2ymu_A 377 ---LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLT------------GHSSSVWGVAFSPDD 438 (577)
T ss_dssp ---EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECTTC-CEEEEEE------------CCSSCEEEEEECTTS
T ss_pred ---EEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeCCC-CEEEEec------------CCCCCeEEEEECCCC
Confidence 22334 488899999999999 8999999999999999653 2221222 244679999999999
Q ss_pred eEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEE
Q 000992 460 LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAF 539 (1196)
Q Consensus 460 ~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 539 (1196)
++|++++.+ ..+.+|+.. + .. +.....+.+.|..+.++| ++..++
T Consensus 439 ~~l~~~~~d--~~v~~w~~~--~----------------------------~~--~~~~~~~~~~v~~~~~sp-d~~~la 483 (577)
T 2ymu_A 439 QTIASASDD--KTVKLWNRN--G----------------------------QL--LQTLTGHSSSVRGVAFSP-DGQTIA 483 (577)
T ss_dssp SEEEEEETT--SEEEEEETT--S----------------------------CE--EEEEECCSSCEEEEEECT-TSCEEE
T ss_pred CEEEEEcCC--CEEEEEECC--C----------------------------CE--EEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 999998775 578888751 2 01 122345678899999998 899999
Q ss_pred EEeeCCeEEEEecc
Q 000992 540 LQFHGGKISEYMSR 553 (1196)
Q Consensus 540 ~~~~dG~v~~~~~~ 553 (1196)
....||+|..|+..
T Consensus 484 s~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 484 SASDDKTVKLWNRN 497 (577)
T ss_dssp EEETTSEEEEEETT
T ss_pred EEeCCCEEEEEcCC
Confidence 99999999999753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=365.02 Aligned_cols=432 Identities=14% Similarity=0.139 Sum_probs=327.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccce------e---eccccc--------------------cccccC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASI------K---TAISAE--------------------IEHIDL 72 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~------~---~~~~~~--------------------l~~~~~ 72 (1196)
.+.+++|.+++..|.+++.++.+..|+.. ....... + ..-|.. ......
T Consensus 100 ~v~~~~~s~d~~~l~~~~~d~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (577)
T 2ymu_A 100 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 177 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT--CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEcCCCceeecccc--cceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeecc
Confidence 78899999999999999999999999863 1111000 0 000000 000001
Q ss_pred CCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 73 EPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 73 ~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
...+.|..+.|+|+++.|++++.||.|++|+..+..+..+..|.+.|.+++|||||++|++++.|++|++|+.....+..
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~ 257 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 257 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE
T ss_pred CCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEE
Confidence 11467899999999999999999999999998877666666678999999999999999999999999999866554432
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.. +|...+.+++|+|||++|+ +++ .+++|++||. +|++.....+|.+.+.+++|+|
T Consensus 258 ~~----------------~~~~~v~~v~~~~d~~~l~-~~~------~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 258 LT----------------GHSSSVNGVAFRPDGQTIA-SAS------DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp EC----------------CCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEET-TSCEEEEECCCSSCEEEEEECT
T ss_pred Ee----------------cCCCCEEEEEEcCCCCEEE-EEe------CCCEEEEEeC-CCcEEEEEecCCCCeEEEEECC
Confidence 22 4556789999999999999 565 4689999999 8999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+|++||+++.++ .|++|+.++..... +.. +...|.+++|+|||+.||+++.|+ +|++|+.... +.
T Consensus 314 ~~~~l~t~~~d~------~i~~w~~~~~~~~~--~~~-~~~~v~~~~~s~~g~~l~~~~~dg---~v~~~~~~~~---~~ 378 (577)
T 2ymu_A 314 DGQTIASASDDK------TVKLWNRNGQHLQT--LTG-HSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQ---LL 378 (577)
T ss_dssp TSSEEEEEETTS------CEEEEETTSCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---EEEEEETTCC---EE
T ss_pred CCCEEEEEeCCC------eEEEEeCCCCeeEE--EeC-CCCCEEEEEECCCCCEEEEEeCCC---EEEEEcCCCC---EE
Confidence 999999999864 69999998765432 333 356799999999999999999999 9999997643 23
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE--------------EEeee--cCCCeeEEEEcCCEEEEeeccc
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF--------------IWTTA--VMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~--------------~~~~~--~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
..+..+......+.|+|++.. |.+++.+|.+.+++. ++.++ |++..++...++.++++|+...
T Consensus 379 ~~~~~~~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 379 QTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSC-EEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred EEecCCCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 445444444488999999875 666666776654321 11222 4444556666777899998643
Q ss_pred cCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEE
Q 000992 377 SLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIW 455 (1196)
Q Consensus 377 ~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~ 455 (1196)
. ....+ .|...|.+++|+||+ +.||+++.|++|++|+.++ .+...+. .|.+.|..++|
T Consensus 458 ~------~~~~~~~~~~~v~~~~~spd~--~~las~~~d~~i~iw~~~~-~~~~~~~------------~h~~~v~~l~~ 516 (577)
T 2ymu_A 458 Q------LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNRNG-QLLQTLT------------GHSSSVRGVAF 516 (577)
T ss_dssp C------EEEEEECCSSCEEEEEECTTS--CEEEEEETTSEEEEEETTS-CEEEEEE------------CCSSCEEEEEE
T ss_pred C------EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCEEEEEcCCC-CEEEEEe------------CCCCCEEEEEE
Confidence 2 22334 588999999999999 8999999999999999753 2332233 34568999999
Q ss_pred ecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCC
Q 000992 456 LGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKK 535 (1196)
Q Consensus 456 ~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 535 (1196)
+|||++||+++.+ ..+.+|+. ++ .. +.....+.+.|..+.++| ++
T Consensus 517 s~dg~~l~s~~~d--g~v~lwd~--~~----------------------------~~--~~~~~~h~~~v~~~~fs~-dg 561 (577)
T 2ymu_A 517 SPDGQTIASASDD--KTVKLWNR--NG----------------------------QL--LQTLTGHSSSVWGVAFSP-DG 561 (577)
T ss_dssp CTTSSCEEEEETT--SEEEEECT--TS----------------------------CE--EEEEECCSSCEEEEEECT-TS
T ss_pred cCCCCEEEEEECc--CEEEEEeC--CC----------------------------CE--EEEEcCCCCCEEEEEEcC-CC
Confidence 9999999998875 57888864 22 11 123456788999999998 89
Q ss_pred ceEEEEeeCCeEEEEe
Q 000992 536 YSAFLQFHGGKISEYM 551 (1196)
Q Consensus 536 ~~~~~~~~dG~v~~~~ 551 (1196)
..++....||+|..|+
T Consensus 562 ~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 562 QTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEeCCCEEEEeC
Confidence 9999999999999884
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=367.33 Aligned_cols=685 Identities=13% Similarity=0.058 Sum_probs=418.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.++.|..|+. .++.. +.+ +.++ .+.|.+++|+|+++.|++++.||+|++
T Consensus 57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFNY--NTGEK---VVD----FEAH----PDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEET--TTCCE---EEE----EECC----SSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCcE---EEE----EecC----CCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 7899999999999999999999999998 44443 111 3333 368999999999999999999999999
Q ss_pred EECCCC-eE-EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGN-AT-EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~-~~-e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+.+++ .. .....|...|.+++||| ||+.|++++.||+|.+|+.. ..+...... .+...+.
T Consensus 124 w~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~---------------~~~~~v~ 188 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT---------------GQERGVN 188 (814)
T ss_dssp EEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC---------------CCTTCCC
T ss_pred EECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec---------------CCCCCEE
Confidence 999875 33 35556789999999999 99999999999999999732 222221111 1225678
Q ss_pred EEEEcc--CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.++|+| ||.+|+ +++ .+++|++||..+|+...+..+|.+.+.+++|+|+|++|++++.++ .|++|
T Consensus 189 ~~~~~~~~~~~~l~-~~~------~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~v~vw 255 (814)
T 3mkq_A 189 YVDYYPLPDKPYMI-TAS------DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG------TLKIW 255 (814)
T ss_dssp EEEECCSTTCCEEE-EEC------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEE
T ss_pred EEEEEECCCCCEEE-EEe------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC------eEEEE
Confidence 999999 999999 565 468999999989999999999999999999999999999999864 69999
Q ss_pred eCCC-eeEEEEEeccCCCCcEEEEEEccCCC--eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCC
Q 000992 256 ERNG-LERSSFDINEQIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKP 332 (1196)
Q Consensus 256 e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~--~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~ 332 (1196)
+.+. .... .+.. +...|..++|+|+|. ++|++..++ +.+|+..+... .+.|+|++.
T Consensus 256 d~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--------------~~~~~~~g~ 314 (814)
T 3mkq_A 256 NSSTYKVEK--TLNV-GLERSWCIATHPTGRKNYIASGFDNG----FTVLSLGNDEP--------------TLSLDPVGK 314 (814)
T ss_dssp ETTTCSEEE--EECC-SSSSEEEEEECTTCGGGEEEEEETTE----EEEEECSCCSC--------------CEEECSSSE
T ss_pred ECCCCcEEE--Eeec-CCCcEEEEEEccCCCceEEEEEeCCC----EEEEEcCCCCc--------------eeEECCCCC
Confidence 9653 3333 2332 345799999999998 466666554 88998765321 122333322
Q ss_pred ceEEEEecCC-------------------c-------------EEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 333 LQLICWTLDG-------------------Q-------------ITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 333 ~~L~~~~~~g-------------------~-------------~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
. +.....++ . .......|+ |++. .+++..++.+.+|.+..+.
T Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg~-~la~~~~~~~~i~~~~~~~-- 388 (814)
T 3mkq_A 315 L-VWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS--PNGR-FVTVVGDGEYVIYTALAWR-- 388 (814)
T ss_dssp E-EEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC--TTSS-EEEEEETTEEEEEETTTTE--
T ss_pred E-EEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC--CCCC-EEEEecCCEEEEEECcccc--
Confidence 1 11110000 0 000111121 3333 3444445677788764321
Q ss_pred CCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC-
Q 000992 381 PPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH- 459 (1196)
Q Consensus 381 ppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~- 459 (1196)
..+.+.|.+++|||+| +.+|+++.+|+|++|+.- .| +...+..++|+|+|
T Consensus 389 -------~~~~~~i~~~~~spdg--~~la~~~~~g~v~l~~~~--------~~------------~~~~v~~~~~s~dg~ 439 (814)
T 3mkq_A 389 -------NKAFGKCQDFVWGPDS--NSYALIDETGQIKYYKNF--------KE------------VTSWSVPMHSAIDRL 439 (814)
T ss_dssp -------EEEEEECSEEEECTTS--SCEEEECTTCCEEEEETT--------EE------------CTTCCCCCSSCCCEE
T ss_pred -------ccCCCceEEEEEeCCC--CeEEEEeCCCcEEEEECC--------CC------------ccceEEcCCcCccce
Confidence 1234567899999999 899999999999999742 12 12345667888998
Q ss_pred --eEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCce
Q 000992 460 --LLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYS 537 (1196)
Q Consensus 460 --~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 537 (1196)
..|++++.+ ..+.+|++.- + ..+ ..+......+.++| ++..
T Consensus 440 ~~~~l~~~~~d--~~v~~~d~~~-~----------------------------~~~-----~~~~~~~~~v~~s~-dg~~ 482 (814)
T 3mkq_A 440 FSGALLGVKSD--GFVYFFDWDN-G----------------------------TLV-----RRIDVNAKDVIWSD-NGEL 482 (814)
T ss_dssp ECSSSEEEEET--TEEEEECTTT-C----------------------------CEE-----EEESSCEEEEEECT-TSSE
T ss_pred ecceEEEEecC--CEEEEEECCc-C----------------------------cEE-----EEEecCCCEEEEcC-CCCE
Confidence 245555443 5788887620 1 011 11122222677888 8888
Q ss_pred EEEE------eeCCeEEEEeccc-c---ccC---CCCCCCCCCCCCCCCce-eEEEecCCCCCccEEEEEcCCCceEeCC
Q 000992 538 AFLQ------FHGGKISEYMSRV-G---LTG---GALTHDDASFPSSCPWM-NVVSVGTNGPLKPLLFGLDDGGRLHVSG 603 (1196)
Q Consensus 538 ~~~~------~~dG~v~~~~~~~-~---~~~---~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~~gL~~~~~L~~n~ 603 (1196)
+++. ..++.++.+...+ . +.. .+.++..-.|...|..- .+....|.+ .+.+--++.+++.
T Consensus 483 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~~---~~~i~~t~~~~~~--- 556 (814)
T 3mkq_A 483 VMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWVG---DVFIFTTATNRLN--- 556 (814)
T ss_dssp EEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEET---TEEEEECTTSEEE---
T ss_pred EEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEeC---CEEEEEcCCCeEE---
Confidence 8888 4444443332111 0 000 00000001111111000 000000001 1111111122221
Q ss_pred EEeecCceeEEEeccCccccceEEEEEecCCeEEEEEcCccccccccccccccccccCccccccccccccccCCCEEEEE
Q 000992 604 KIVCNNCSSFSFYSKSAGQAMSHLILATKQNLLFIVDISDILHGELALKYENFTHVGNRRKEENISYINIWERGAKVIGV 683 (1196)
Q Consensus 604 ~~~~~~~tSf~~~~~~~~~~~~~Ll~tT~~~~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~de~~R~vErGs~iV~~ 683 (1196)
+.+..+ ...+.+..+.+.. .+-+-.|.+|+.+
T Consensus 557 ---------~~~~~~-------~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~ 588 (814)
T 3mkq_A 557 ---------YFVGGK-------TYNLAHYTKEMYL--------------------------------LGYLARDNKVYLA 588 (814)
T ss_dssp ---------EEETTE-------EEEEEECSSCCEE--------------------------------EEEEGGGTEEEEE
T ss_pred ---------EEeCCe-------eEEEEECCccEEE--------------------------------EEEEecCCEEEEE
Confidence 111112 1111111111111 0111234455554
Q ss_pred ecCCccEEEEEcCCCccccccchhhhHHHHHHHHhcccHHHHHH-HHHhccccceeeeecccHHHHHHhHHHHHHhcCCc
Q 000992 684 LHGDEAAVILQTNRGNLECMYPRKLVLTSIVNALIQGRFRDALV-MVRRHRINFNVIVDHCGWQAFLQSASEFVRQVNNL 762 (1196)
Q Consensus 684 ~p~~~~~vVLQmpRGNLEti~PR~lvL~~i~~~l~~~~y~~Af~-~~R~hRIdlNll~D~~~p~~F~~~~~~Fv~qv~~~ 762 (1196)
-... --.+++++-.-++ .+..+..++|.+|.. ++ ..
T Consensus 589 d~~~-~~~~~~l~~~~~~-----------~~~~~~~~~~~~a~~~~l---------------------------~~---- 625 (814)
T 3mkq_A 589 DREV-HVYGYEISLEVLE-----------FQTLTLRGEIEEAIENVL---------------------------PN---- 625 (814)
T ss_dssp CTTC-CEEEEECCHHHHH-----------HHHHHHTTCHHHHHHHTG---------------------------GG----
T ss_pred cCCC-CEEEEEECcHHHH-----------HhHHHHhCCHHHHHHHHH---------------------------hc----
Confidence 4222 2334444432111 234455566666522 11 00
Q ss_pred chHHHHHhhccCCcccccccccccccCCC-ccccccCCCcccccCcCCCcHHHHHHHHHHHHhhcCCCCCCchhhhhhhh
Q 000992 763 SYITEFVCAINNENITETLYKKFQFLSLP-CREEFKDLPAKDFKASECNKVSSVLLAIRKALEEKVPESPSRELCILTTL 841 (1196)
Q Consensus 763 ~~l~lFls~L~~edvt~t~Y~~~~~~~~~-~~~~~~~~~~~~~~~~~~~KVn~iC~a~~~~l~~~~~~~~~~~~~ilT~~ 841 (1196)
+ + . +.+ +.+...|++. .
T Consensus 626 -------------------------i--~~~-----------------~~~----~~~~~~l~~~-----~--------- 643 (814)
T 3mkq_A 626 -------------------------V--EGK-----------------DSL----TKIARFLEGQ-----E--------- 643 (814)
T ss_dssp -------------------------C--CCH-----------------HHH----HHHHHHHHHT-----T---------
T ss_pred -------------------------C--Cch-----------------HHH----HHHHHHHHhC-----C---------
Confidence 0 0 0 001 1122222221 0
Q ss_pred hhcCCccHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCcchh
Q 000992 842 ARSDPPALEEALERIKIIRETELLGSDEPRRMSYPSAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF 921 (1196)
Q Consensus 842 ~~~~pp~le~aL~~i~~l~~~~~~~~~~~~~~~~~~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~DpkeY 921 (1196)
..+.||+.. .|...-|+.||.+-+|+.|+.+|+.. .+|
T Consensus 644 ------~~~~a~~~~--------------------------------~~~~~~f~~~l~~~~~~~A~~~~~~~-~~~--- 681 (814)
T 3mkq_A 644 ------YYEEALNIS--------------------------------PDQDQKFELALKVGQLTLARDLLTDE-SAE--- 681 (814)
T ss_dssp ------CHHHHHHHC--------------------------------CCHHHHHHHHHHHTCHHHHHHHHTTC-CCH---
T ss_pred ------ChHHheecC--------------------------------CCcchheehhhhcCCHHHHHHHHHhh-CcH---
Confidence 034444432 12233366777788888877776543 222
Q ss_pred hHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHH
Q 000992 922 LPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 922 lpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~ 998 (1196)
..|+++.+...+.|+ ++.|.+.+.+. +.|..+..|+ .+++. +.+.|+
T Consensus 682 -----------------------~~W~~la~~al~~~~--~~~A~~~y~~~-~d~~~l~~l~~~~~~~~~----~~~~~~ 731 (814)
T 3mkq_A 682 -----------------------MKWRALGDASLQRFN--FKLAIEAFTNA-HDLESLFLLHSSFNNKEG----LVTLAK 731 (814)
T ss_dssp -----------------------HHHHHHHHHHHHTTC--HHHHHHHHHHH-TCHHHHHHHHHHTTCHHH----HHHHHH
T ss_pred -----------------------hHHHHHHHHHHHcCC--HHHHHHHHHHc-cChhhhHHHHHHcCCHHH----HHHHHH
Confidence 246667777777766 78888888887 8888888887 44443 345578
Q ss_pred HHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHH
Q 000992 999 HLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAK 1071 (1196)
Q Consensus 999 ~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~ 1071 (1196)
-.+..++++.|..+|.++|++++|+++|.+.++|.+|+.+|+.++...+.+..+..+.+++|.+.|++..|..
T Consensus 732 ~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~ 804 (814)
T 3mkq_A 732 DAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSER 804 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTT
T ss_pred HHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHh
Confidence 8888999999999999999999999999999999999999999875543488999999999999999765544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=366.64 Aligned_cols=392 Identities=11% Similarity=0.073 Sum_probs=286.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC----C
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----G 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----G 97 (1196)
.+.+++|.|++..|.+++.|+.|..||. .+++.... .+ +..| .+.|.+++|+|||+.|++++.+ |
T Consensus 61 ~v~~~~~spdg~~lasg~~d~~v~lWd~--~~~~~~~~-~~----~~~~----~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 61 QTTVAKTSPSGYYCASGDVHGNVRIWDT--TQTTHILK-TT----IPVF----SGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEES--SSTTCCEE-EE----EECS----SSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ceEEEEECCCCcEEEEEeCCCCEEEeEC--CCCcceee-Ee----eccc----CCceEEEEECCCCCEEEEEECCCCcee
Confidence 7899999999999999999999999998 43332111 11 2333 3689999999999999999876 5
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+|++||... ....+..|.+.|.+++|||||. .||+++.|++|++|+. .+.... .+.+|.+.
T Consensus 130 ~v~~wd~~~-~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~----------------~l~~H~~~ 192 (611)
T 1nr0_A 130 HVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS----------------TFGEHTKF 192 (611)
T ss_dssp EEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE----------------EECCCSSC
T ss_pred EEEEeeCCC-CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee----------------eeccccCc
Confidence 788888533 2223344689999999999997 5999999999999862 222111 12367788
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-------cCCCceeEEEEcCCCCeEEEEecCCCCCC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-------LKAFMGAVLEWMPSGANIAAVYDRKSENK 248 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-------~~~~~v~slawsPdG~~IAs~s~d~~~~~ 248 (1196)
|.+++|+|||++|| +++ .|++|||||..+|+...++. +|.+.+.+++|+|||++||+++.|
T Consensus 193 V~~v~fspdg~~la-s~s------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D----- 260 (611)
T 1nr0_A 193 VHSVRYNPDGSLFA-STG------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----- 260 (611)
T ss_dssp EEEEEECTTSSEEE-EEE------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred eEEEEECCCCCEEE-EEE------CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC-----
Confidence 99999999999999 565 47999999988999988874 789999999999999999999986
Q ss_pred CCeEEEEeCC-CeeEEEEEe----------------------------------------ccCCCCcEEEEEEccCCCee
Q 000992 249 CPSIVFYERN-GLERSSFDI----------------------------------------NEQIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 249 ~~~V~~~e~n-Gl~~~~f~l----------------------------------------~~~~~~~V~~laWSpDg~~L 287 (1196)
.+|++|+.. |.....+.. ...+...|.+++|||||++|
T Consensus 261 -~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 261 -KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp -SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 469999954 433322210 01245679999999999999
Q ss_pred EEEEccCCcceEEEEEecCCEEEEE-----------------------------------------------------EE
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWYLK-----------------------------------------------------YE 314 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wylk-----------------------------------------------------q~ 314 (1196)
|+++.|+ +|++|++.+...... ..
T Consensus 340 ~s~s~D~---~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 340 FSADAEG---HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp EEEETTS---CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred EEEeCCC---cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 9999999 999999764321000 00
Q ss_pred EEEecC---------------------------CcEEEEEccCCCceEEEEecCCcEEEEEEE----------------E
Q 000992 315 IRYLRR---------------------------DGIRFMWHPTKPLQLICWTLDGQITTYNFI----------------W 351 (1196)
Q Consensus 315 l~~~~~---------------------------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~----------------~ 351 (1196)
+.+.++ ...++.|+|++.. |++++.+|.+..++.. +
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~-lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~ 495 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF-VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 495 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE-EEEEETTSEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE-EEEeCCCCeEEEEEccCCceeeeeccCCCCceE
Confidence 111111 1256889998864 7788888887766532 1
Q ss_pred eee--cCCCeeEEEEcCCEEEEeeccc-cCCCCCceeeeec-CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 352 TTA--VMENSTALVIDGSKILVTPLSL-SLMPPPMYLFSLK-FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 352 ~~~--~~d~~~v~viDg~~l~lt~l~~-~~vpppm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
.++ |++..+++...+.++++|.+.. ..+.. ..... |...|++|+||||| ++||+++.|++|++|+++++..
T Consensus 496 ~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~~V~~v~fspdg--~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTAKVACVSWSPDN--VRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTCTTS
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecccceeEEEECCCC--CEEEEEECCCcEEEEECCCccc
Confidence 222 3444455666777899998763 11100 00123 88999999999999 8999999999999999986432
Q ss_pred c--ccccCCceeeeeeccccc-CCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 428 L--EDLEGTEFVVEACISETA-FGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 428 ~--~~~~g~~~~~~~~~~~~~-~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
. ..+. .| .+.|..++|+|+++ |++++.+ .++.+|++
T Consensus 571 ~~~~~~~------------~h~~~~v~~v~fs~d~~-l~s~~~D--~~i~lW~~ 609 (611)
T 1nr0_A 571 HPIIIKG------------AHAMSSVNSVIWLNETT-IVSAGQD--SNIKFWNV 609 (611)
T ss_dssp CCEEETT------------SSTTSCEEEEEEEETTE-EEEEETT--SCEEEEEC
T ss_pred ccchhhc------------cCcccCeeEEEEcCCCE-EEEecCC--CCEEEEec
Confidence 2 1222 23 46899999999999 8887765 68899976
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-32 Score=334.10 Aligned_cols=446 Identities=12% Similarity=0.080 Sum_probs=306.8
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEEeCCCcEEEEecccccc----cccceeeccccccccccCCCCC
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQN----ERASIKTAISAEIEHIDLEPGD 76 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~ 76 (1196)
|.++.+.......|. ...+ .+.+++|+++++.|++++ ++.|..|++ .++ .. +.. +.+| .+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~-~v~~~~~spdg~~l~~~~-~~~v~v~~~--~~~~~~~~~---~~~----~~~h----~~ 64 (615)
T 1pgu_A 1 MSSISLKEIIPPQPS-TQRN-FTTHLSYDPTTNAIAYPC-GKSAFVRCL--DDGDSKVPP---VVQ----FTGH----GS 64 (615)
T ss_dssp -CCEEEEEEECCCCC-CCTT-CCCCCEEETTTTEEEEEE-TTEEEEEEC--CSSCCSSCS---EEE----ECTT----TT
T ss_pred CCccchhhccCCCCC-CccC-ceeEEEECCCCCEEEEec-CCeEEEEEC--CCCCCcccc---ceE----EecC----CC
Confidence 667777665433322 2223 799999999999999998 567999999 443 21 111 3334 35
Q ss_pred C-EEEEEEcc--CCCEEEEEECCCcEEEEECCCC--------e-EEEeeeecCcEEEEEECCCCCEEEEEeCC----ceE
Q 000992 77 S-ITAFDYLM--EKEALIVGTSSGLLLLHSVDGN--------A-TEVVGRVEGGVRFISPSPDGDLLGVTTGF----GQI 140 (1196)
Q Consensus 77 ~-v~~v~~sp--d~~~La~as~dG~I~lw~~~~~--------~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV 140 (1196)
. |.+++|+| |++.|++++.||+|++|+..++ . ......|..+|.+++|||||++|++++.+ +.|
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v 144 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 144 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred ceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEE
Confidence 7 99999999 9999999999999999999643 2 23445578899999999999999999988 688
Q ss_pred EEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 141 LVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 141 ~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
.+|+ ....+. .+.+|...+.+++|+|||+ +|+ +++ .+++|+|||..++++..++.
T Consensus 145 ~~~d-~~~~~~----------------~~~~~~~~v~~~~~~~~~~~~l~-~~~------~d~~v~vwd~~~~~~~~~~~ 200 (615)
T 1pgu_A 145 ISWD-SGNSLG----------------EVSGHSQRINACHLKQSRPMRSM-TVG------DDGSVVFYQGPPFKFSASDR 200 (615)
T ss_dssp EETT-TCCEEE----------------ECCSCSSCEEEEEECSSSSCEEE-EEE------TTTEEEEEETTTBEEEEEEC
T ss_pred EEEE-CCCcce----------------eeecCCccEEEEEECCCCCcEEE-EEe------CCCcEEEEeCCCcceeeeec
Confidence 7764 222221 1225667889999999998 677 454 46999999998999999999
Q ss_pred cCCC---ceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc---CCCCcEEEEEEccCCCeeEEEE
Q 000992 220 LKAF---MGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE---QIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 220 ~~~~---~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~---~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
+|.+ .+.+++|+|+ |++|++++.++ .|.+|+. +|.... .+.. .+...|.+++|+ |+++|++++
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 271 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDR------KISCFDGKSGEFLK--YIEDDQEPVQGGIFALSWL-DSQKFATVG 271 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTC------CEEEEETTTCCEEE--ECCBTTBCCCSCEEEEEES-SSSEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCEeE--EecccccccCCceEEEEEc-CCCEEEEEc
Confidence 8988 8999999999 99999999864 6999994 454433 2312 346789999999 999999999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEec----CCcEEEEEc---------------------------------------
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLR----RDGIRFMWH--------------------------------------- 328 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~----~~~~~v~Ws--------------------------------------- 328 (1196)
.|+ +|++|+..+... .+.+..+. .....+.|+
T Consensus 272 ~d~---~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~ 346 (615)
T 1pgu_A 272 ADA---TIRVWDVTTSKC--VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALT 346 (615)
T ss_dssp TTS---EEEEEETTTTEE--EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred CCC---cEEEEECCCCcE--EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEE
Confidence 999 999999986543 12222210 000222221
Q ss_pred -cC---------------------------------CCceEEEEecCCcEEEEEEEE-----------------------
Q 000992 329 -PT---------------------------------KPLQLICWTLDGQITTYNFIW----------------------- 351 (1196)
Q Consensus 329 -p~---------------------------------~~~~L~~~~~~g~~~~~~~~~----------------------- 351 (1196)
|+ +. .|..++.+|.+..++..-
T Consensus 347 ~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (615)
T 1pgu_A 347 VNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 425 (615)
T ss_dssp TTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEET
T ss_pred ecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCc-EEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeC
Confidence 11 11 122222333332211110
Q ss_pred -------e------------------eecCCCeeEEEEc-CCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCC
Q 000992 352 -------T------------------TAVMENSTALVID-GSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSS 404 (1196)
Q Consensus 352 -------~------------------~~~~d~~~v~viD-g~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~ 404 (1196)
. +.+++..++.... ++.+++|++......+ ..+ .|...|.+++|+|+|
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g- 500 (615)
T 1pgu_A 426 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLRAKPSYISISPSE- 500 (615)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCSSCEEEEEECTTS-
T ss_pred CCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc----cccCCccCceEEEEECCCC-
Confidence 0 0000111122222 4455666554321100 222 478899999999999
Q ss_pred CCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEec----------CCeEEEEEecCCCCceE
Q 000992 405 KNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLG----------SHLLLSVSHHGPRHSNY 474 (1196)
Q Consensus 405 ~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~----------d~~lla~~~~~~~~~~~ 474 (1196)
+.||+++.||.|++|++.+......+.+ .+...+..++|+| ++.+||+++.+ ..+.
T Consensus 501 -~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d--g~i~ 566 (615)
T 1pgu_A 501 -TYIAAGDVMGKILLYDLQSREVKTSRWA-----------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLD--TNIF 566 (615)
T ss_dssp -SEEEEEETTSCEEEEETTTTEEEECCSC-----------CCSSCEEEEEECCCC------CCSCCEEEEEETT--SCEE
T ss_pred -CEEEEcCCCCeEEEeeCCCCcceeEeec-----------CCCCceeEEEEcCccccccccccCCCEEEEEcCC--CcEE
Confidence 8999999999999999986544433222 1456899999999 99999998876 6889
Q ss_pred EEEeeccCCccccchhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEec
Q 000992 475 FRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~ 552 (1196)
+|++.-.+ .. +.....+.+.|..+.+++ ++. ++....||+|..|+.
T Consensus 567 iw~~~~~~----------------------------~~--~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 567 IYSVKRPM----------------------------KI--IKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNV 612 (615)
T ss_dssp EEESSCTT----------------------------CC--EEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEE
T ss_pred EEECCCCc----------------------------ee--chhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEee
Confidence 99873110 01 122345678899999988 777 989999999999965
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-31 Score=346.69 Aligned_cols=464 Identities=13% Similarity=0.089 Sum_probs=303.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++.|+.|+.|+. ...+. +.+ +. + ...|.+++|+| |+.|++++.||+|++
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~--~~~~~---~~~----~~-~----~~~V~~l~fsp-g~~L~S~s~D~~v~l 83 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQ--QQVEV---VIK----LE-D----RSAIKEMRFVK-GIYLVVINAKDTVYV 83 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECS--TTCEE---EEE----CS-S----CCCEEEEEEET-TTEEEEEETTCEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeC--CCcEE---EEE----cC-C----CCCEEEEEEcC-CCEEEEEECcCeEEE
Confidence 7999999999999999999999999998 33322 110 11 1 35799999999 889999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
||..++++ .... +.+.|++++|||||++||+++.||+|++|+..........+.... +. ...+.+|.+.|.+++
T Consensus 84 Wd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~--~~--~~~~~~h~~~V~sl~ 158 (902)
T 2oaj_A 84 LSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ--KS--SFFPAARLSPIVSIQ 158 (902)
T ss_dssp EETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHH--HH--HTCSSSCCCCCCEEE
T ss_pred EECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccc--cc--ccccccCCCCeEEEE
Confidence 99988654 3444 568899999999999999999999999997543222211110000 00 011236778899999
Q ss_pred EccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC------------------CCceeEEEEcCCCCeEEEEe
Q 000992 181 WRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------------------AFMGAVLEWMPSGANIAAVY 241 (1196)
Q Consensus 181 WspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~------------------~~~v~slawsPdG~~IAs~s 241 (1196)
|+|+ +.+|+ +++ .+++| |||..+++...++..+ .+.+.+++|+|+|++||+++
T Consensus 159 ~sp~~~~~l~-~g~------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs 230 (902)
T 2oaj_A 159 WNPRDIGTVL-ISY------EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH 230 (902)
T ss_dssp EETTEEEEEE-EEC------SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred EccCCCCEEE-EEe------CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence 9996 46777 565 46899 9999899988887655 46799999999999999999
Q ss_pred cCCCCCCCCeEEEEeC-CCeeEEEEEec---cC------------CCCcEEEEEEc----cCC-CeeEEEEccCC--cce
Q 000992 242 DRKSENKCPSIVFYER-NGLERSSFDIN---EQ------------IDSTVELLKWN----CMS-DLLAAVVRFEE--YDS 298 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~-nGl~~~~f~l~---~~------------~~~~V~~laWS----pDg-~~LAs~~~d~~--~~~ 298 (1196)
.|+ .|++|+. +|.......+. .+ +...|.+++|+ ||+ .+||+++.+.. ..+
T Consensus 231 ~Dg------~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 231 EDN------SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp TTC------CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred CCC------eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 874 6999996 45432221121 11 13469999995 554 67888876631 126
Q ss_pred EEEEEecCCE-------------E---EEEEEEEEecC-CcEEEEEccC---------CCceEEEEecCCcEEEEEE---
Q 000992 299 VKICFFSNNH-------------W---YLKYEIRYLRR-DGIRFMWHPT---------KPLQLICWTLDGQITTYNF--- 349 (1196)
Q Consensus 299 V~lW~~~n~~-------------w---ylkq~l~~~~~-~~~~v~Wsp~---------~~~~L~~~~~~g~~~~~~~--- 349 (1196)
|++|+..... | ...+.+.+... ....+.+.|+ .+..+.+++.+|++..+++
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 8888853100 0 01122222111 1244555441 1223444455555544331
Q ss_pred -----------------------EE------------------------------eee--cCCCeeEEEEcCCEEEEeec
Q 000992 350 -----------------------IW------------------------------TTA--VMENSTALVIDGSKILVTPL 374 (1196)
Q Consensus 350 -----------------------~~------------------------------~~~--~~d~~~v~viDg~~l~lt~l 374 (1196)
.+ .++ ++...++....+++|++|++
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 00 001 11223455667789999998
Q ss_pred cccCCCCC-ceeeee------cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccc--------c---------
Q 000992 375 SLSLMPPP-MYLFSL------KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLE--------D--------- 430 (1196)
Q Consensus 375 ~~~~vppp-m~~~~l------~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~--------~--------- 430 (1196)
.......+ .....+ .|...|++|+||||| +.||+++.||+|+||++.+..... .
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg--~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAET--LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFS 542 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTT--TEEEEEETTSCEEEEEEEECCC---------------CCSCC
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCC--CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecc
Confidence 76533222 111111 577899999999999 999999999999999987531100 0
Q ss_pred -ccCC----------------ceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhh
Q 000992 431 -LEGT----------------EFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEI 493 (1196)
Q Consensus 431 -~~g~----------------~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1196)
..++ ++.... ....+.+.|+.++|+||| +||+++.+ .++.+|++. + .
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~l~~h~~~V~svafSpdG-~lAsgs~D--~tv~lwd~~--~----------~ 606 (902)
T 2oaj_A 543 LNNTNGVLVDVRDRAPTGVRQGFMPST-AVHANKGKTSAINNSNIG-FVGIAYAA--GSLMLIDRR--G----------P 606 (902)
T ss_dssp GGGSSCSEEECGGGCCTTCSEEEEEEE-EECCCSCSEEEEEECBTS-EEEEEETT--SEEEEEETT--T----------T
T ss_pred ccCCccccccccccCCCCCCCccceeE-EEEcCCCcEEEEEecCCc-EEEEEeCC--CcEEEEECC--C----------C
Confidence 0000 001000 113466799999999999 99999876 688999862 1 0
Q ss_pred hhhcccccccccccccccceeeeeee-ccCCcEEEEecC-----CCC---CceEEEEeeCCeEEEEec
Q 000992 494 ELACSEDHVQGLLTCAGWHAKVSTQI-PLEGLVIAIAPN-----NAK---KYSAFLQFHGGKISEYMS 552 (1196)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~-----~~~---~~~~~~~~~dG~v~~~~~ 552 (1196)
.++. ........ .+.+.|.++.++ + | +..++..+.||+|..|+.
T Consensus 607 ~~~~--------------~~~~~~~~~gh~~~V~sv~Fs~~~~~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 607 AIIY--------------MENIREISGAQSACVTCIEFVIMEYGD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEE--------------EEEGGGTCSSCCCCEEEEEEEEEECTT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred eEEE--------------EeehhHhccccccceEEEEEEEEecCC-CCCcceEEEEEecCCcEEEEEE
Confidence 0000 00001111 456779999888 6 5 378888999999999975
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=357.15 Aligned_cols=454 Identities=12% Similarity=0.053 Sum_probs=323.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..||. .++.. +.+ +.++ .+.|.+++|+| ++..+++++.||+|
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~--~~~~~---~~~----~~~~----~~~v~~~~~~~~~~~~~l~sg~~d~~v 725 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDS--ATGKL---VHT----YDEH----SEQVNCCHFTNKSNHLLLATGSNDFFL 725 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET--TTCCE---EEE----EECC----SSCEEEEEECSSSSCCEEEEEETTSCE
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEC--CCCce---EEE----EcCC----CCcEEEEEEecCCCceEEEEEeCCCeE
Confidence 7899999999999999999999999999 55443 121 3333 46899999999 45689999999999
Q ss_pred EEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeeccccc------------------
Q 000992 100 LLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELA------------------ 159 (1196)
Q Consensus 100 ~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~------------------ 159 (1196)
++||..++.. .....|.+.|.+++|||||++||+++.||+|++|+. ..............
T Consensus 726 ~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 726 KLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp EEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred EEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 9999998765 355567899999999999999999999999999973 23222222111000
Q ss_pred ---Cccccc------------------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 160 ---EGFDVH------------------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 160 ---~~~~Vs------------------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
++..+- .....+|...+.+++|+|||.+++ +++ .+++|++||..+|......
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~------~dg~v~vwd~~~~~~~~~~ 878 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV-IAL------SQYCVELWNIDSRLKVADC 878 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE-EEC------SSSCEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE-EEe------CCCeEEEEEcCCCceeeec
Confidence 000000 000116778899999999999999 565 4689999999999999999
Q ss_pred ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe-------eEEE-----------------------EEec
Q 000992 219 ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-------ERSS-----------------------FDIN 268 (1196)
Q Consensus 219 e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl-------~~~~-----------------------f~l~ 268 (1196)
.+|.+.+.+++|+|+|++|++++.|+ .|++|+..+. .... +...
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQ------TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEES
T ss_pred CCCccceEEEEECCCCCEEEEEeCCC------eEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecC
Confidence 99999999999999999999999864 6999984310 0000 0000
Q ss_pred -----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc
Q 000992 269 -----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ 343 (1196)
Q Consensus 269 -----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~ 343 (1196)
......|..++|||+|+.+|+++.++ .|++|+..+... ...+..+......+.|+|++.. |..++.+|.
T Consensus 953 ~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g---~i~i~d~~~~~~--~~~~~~h~~~v~~l~~s~dg~~-l~s~~~dg~ 1026 (1249)
T 3sfz_A 953 TGQIDYLPEAQVSCCCLSPHLEYVAFGDEDG---AIKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKT-LISSSEDSV 1026 (1249)
T ss_dssp SCCEEEECCSCEEEEEECTTSSEEEEEETTS---CCEEEETTTTSC--EEECCCCSSCCCCEEECSSSSC-EEEECSSSB
T ss_pred cceEEEcccCcEEEEEEcCCCCEEEEEcCCC---CEEEEEcCCCce--eeecccCCCceEEEEECCCCCE-EEEEcCCCE
Confidence 01134689999999999999999999 899999987653 2233333333478999999875 777777888
Q ss_pred EEEEEEE--------------Eeeec-CCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCE
Q 000992 344 ITTYNFI--------------WTTAV-MENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNC 407 (1196)
Q Consensus 344 ~~~~~~~--------------~~~~~-~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~ 407 (1196)
+.++++. ..+.+ .+..+++...++++++|++..... ..++ .|.+.|.+++|+|++ +.
T Consensus 1027 i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----~~~~~~~~~~v~~~~~s~d~--~~ 1099 (1249)
T 3sfz_A 1027 IQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-----ERDFTCHQGTVLSCAISSDA--TK 1099 (1249)
T ss_dssp EEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC-----CEEEECCSSCCCCEEECSSS--SS
T ss_pred EEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce-----eEEEcccCCcEEEEEECCCC--CE
Confidence 7654421 11111 233455666677899998865432 2334 478899999999999 89
Q ss_pred EEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCcccc
Q 000992 408 LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLG 487 (1196)
Q Consensus 408 lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~ 487 (1196)
||+++.||+|++|+..+..+...+.| +...|..++|+|+|.+||+++.+ ..+.+|++.- +.
T Consensus 1100 l~s~s~d~~v~iwd~~~~~~~~~l~~------------h~~~v~~~~~s~dg~~lat~~~d--g~i~vwd~~~-~~---- 1160 (1249)
T 3sfz_A 1100 FSSTSADKTAKIWSFDLLSPLHELKG------------HNGCVRCSAFSLDGILLATGDDN--GEIRIWNVSD-GQ---- 1160 (1249)
T ss_dssp CEEECCSSCCCEECSSSSSCSBCCCC------------CSSCEEEEEECSSSSEEEEEETT--SCCCEEESSS-SC----
T ss_pred EEEEcCCCcEEEEECCCcceeeeecc------------CCCcEEEEEECCCCCEEEEEeCC--CEEEEEECCC-Cc----
Confidence 99999999999999987655534433 34579999999999999998865 5788998731 10
Q ss_pred chhhhhhhhcccccccccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 488 FYAQEIELACSEDHVQGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
.+.. ............+.+.|..+++++ ++..++.. +|.|..|+..
T Consensus 1161 -------~~~~----------~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~s~--~g~v~vwd~~ 1206 (1249)
T 3sfz_A 1161 -------LLHS----------CAPISVEEGTATHGGWVTDVCFSP-DSKTLVSA--GGYLKWWNVA 1206 (1249)
T ss_dssp -------CCCC----------CCCCC-------CCSCCCEEEECT-TSSCEEEE--SSSEEEBCSS
T ss_pred -------eEEE----------eccccccccccccCceEEEEEECC-CCCEEEEC--CCeEEEEECC
Confidence 0000 000000011134567788899988 77777654 5999999753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-30 Score=348.06 Aligned_cols=426 Identities=11% Similarity=0.056 Sum_probs=314.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..|+. .+++. +.+ +.+| .+.|.+++|+|||+.||+++.||+|++
T Consensus 617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~--~~~~~---~~~----~~~h----~~~v~~~~~s~~~~~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 617 AVYHACFSQDGQRIASCGADKTLQVFKA--ETGEK---LLD----IKAH----EDEVLCCAFSSDDSYIATCSADKKVKI 683 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TTCCE---EEE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEC--CCCCE---EEE----eccC----CCCEEEEEEecCCCEEEEEeCCCeEEE
Confidence 7899999999999999999999999999 45443 222 3333 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
||..+++. .....|.+.|.+++|+| ++.+|++++.|++|++|+.. ...+.. +.+|.+.+.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~----------------~~~h~~~v~ 747 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNT----------------MFGHTNSVN 747 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEE----------------ECCCSSCEE
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhe----------------ecCCCCCEE
Confidence 99988764 45556789999999999 55689999999999998732 222211 225667899
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------------CCCceeEEEEcCCCCeEEEEecCC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------------~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
+++|+|||++|+ +++ .|++|++||..+++....... ....+.+++|+|+|+.|++++.
T Consensus 748 ~~~~sp~~~~l~-s~s------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-- 818 (1249)
T 3sfz_A 748 HCRFSPDDELLA-SCS------ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-- 818 (1249)
T ss_dssp EEEECSSTTEEE-EEE------SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET--
T ss_pred EEEEecCCCEEE-EEE------CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC--
Confidence 999999999999 565 468999999988877665431 2236789999999999999874
Q ss_pred CCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcE
Q 000992 245 SENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGI 323 (1196)
Q Consensus 245 ~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~ 323 (1196)
..|.+|+.. |..... +...+...|..++|+|+|.++++++.++ +|++|+..+... ...+..+.....
T Consensus 819 -----~~v~~~d~~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vwd~~~~~~--~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 819 -----NKVLLFDIHTSGLLAE--IHTGHHSTIQYCDFSPYDHLAVIALSQY---CVELWNIDSRLK--VADCRGHLSWVH 886 (1249)
T ss_dssp -----TEEEEEETTTCCEEEE--EECSSSSCCCEEEECSSTTEEEEECSSS---CEEEEETTTTEE--EEEECCCSSCEE
T ss_pred -----CcEEEEEecCCCceeE--EcCCCCCceEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCce--eeecCCCccceE
Confidence 469999854 333222 2333456899999999999999999999 999999987642 233444433448
Q ss_pred EEEEccCCCceEEEEecCCcEEEEEEE----------------------------------------------------E
Q 000992 324 RFMWHPTKPLQLICWTLDGQITTYNFI----------------------------------------------------W 351 (1196)
Q Consensus 324 ~v~Wsp~~~~~L~~~~~~g~~~~~~~~----------------------------------------------------~ 351 (1196)
.+.|+|++.. +.+++.+|.+..++.. .
T Consensus 887 ~v~~spdg~~-l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 887 GVMFSPDGSS-FLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEECCCCCE-EEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 8999998875 7777778888765410 0
Q ss_pred eee--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 352 TTA--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 352 ~~~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
.+. +++..+++...++.+.+|++.... ....+ .|...|.+++|+|+| +.|++++.||+|++|++.+....
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~-----~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNR-----VFSSGVGHKKAVRHIQFTADG--KTLISSSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTS-----CEEECCCCSSCCCCEEECSSS--SCEEEECSSSBEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCc-----eeeecccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCceE
Confidence 011 222333444455567777764322 22233 488899999999999 89999999999999999864332
Q ss_pred ccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccccchhhhhhhhcccccccccccc
Q 000992 429 EDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTC 508 (1196)
Q Consensus 429 ~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (1196)
.+. .+...+..++|+|++.+++.+.+ ..+.+|++.. +
T Consensus 1039 -~~~------------~~~~~v~~~~~~~~~~l~~~~~d---g~v~vwd~~~-~-------------------------- 1075 (1249)
T 3sfz_A 1039 -FLQ------------AHQETVKDFRLLQDSRLLSWSFD---GTVKVWNVIT-G-------------------------- 1075 (1249)
T ss_dssp -CCB------------CCSSCEEEEEECSSSEEEEEESS---SEEEEEETTT-T--------------------------
T ss_pred -EEe------------cCCCcEEEEEEcCCCcEEEEECC---CcEEEEECCC-C--------------------------
Confidence 111 23468999999999987655443 5788887621 1
Q ss_pred cccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 509 AGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 509 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
.. ......+.+.|.++.+++ ++..++....||+|..|+..
T Consensus 1076 --~~--~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1076 --RI--ERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp --CC--CEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSS
T ss_pred --ce--eEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECC
Confidence 00 112234567788888888 88999999999999999754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=308.32 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=213.3
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE----EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE----VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e----~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+.|.+++|+|||+.||+++.||+|+|||..++... ....|.+.|.+++|||||++||+++.|++|++|+..-...
T Consensus 17 ~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~- 95 (345)
T 3fm0_A 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF- 95 (345)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E-
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe-
Confidence 47999999999999999999999999999876432 2245788999999999999999999999999986432110
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVL 228 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~sl 228 (1196)
.... .+.+|.+.|.+++|+|||++|| +++ .|++|+|||..++ ++.....+|...+.++
T Consensus 96 -~~~~-----------~~~~h~~~v~~v~~sp~~~~l~-s~s------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 96 -ECVT-----------TLEGHENEVKSVAWAPSGNLLA-TCS------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp -EEEE-----------EECCCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred -EEEE-----------EccCCCCCceEEEEeCCCCEEE-EEE------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 0111 2336778899999999999999 565 4689999998665 3456778899999999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN- 306 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n- 306 (1196)
+|+|+|++||+++.|. .|++|+... .......+.. +...|.+|+|||||++||+++.|+ +|+||+...
T Consensus 157 ~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~l~s~s~D~---~v~iW~~~~~ 226 (345)
T 3fm0_A 157 VWHPSQELLASASYDD------TVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQRLASCSDDR---TVRIWRQYLP 226 (345)
T ss_dssp EECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEEEECT
T ss_pred EECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCCEEEEEeCCC---eEEEeccccC
Confidence 9999999999999864 699998542 2111223443 456899999999999999999999 999999631
Q ss_pred ------------CEEEEEEEEEE-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 307 ------------NHWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 307 ------------~~wylkq~l~~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
..|.....+.. +......+.|+|++.. |..++.++.+. +|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~-------------------------vw~ 280 (345)
T 3fm0_A 227 GNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA-LATACGDDAIR-------------------------VFQ 280 (345)
T ss_dssp TCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC-EEEEETTSCEE-------------------------EEE
T ss_pred CCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE-EEEEeCCCeEE-------------------------EEE
Confidence 12322222221 2222367788887764 55655555554 332
Q ss_pred ccccCCC-CCce---eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 374 LSLSLMP-PPMY---LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 374 l~~~~vp-ppm~---~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
......| .|.. .+.. .|...|++|+|+|++. .+||+++.||+|++|+..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP-GLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp ECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST-TEEEEEETTSCEEEEEECC-
T ss_pred eCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc-eEEEEcCCCCcEEEEEecCC
Confidence 2211101 1111 1111 4788999999999972 49999999999999999764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-30 Score=308.41 Aligned_cols=278 Identities=13% Similarity=0.107 Sum_probs=220.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.+.|++++|+|+++.|++|+.||+|++||..+++. ..+..|.+.|.+++|+|||++||+++.|++|++|+. .++.+.
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~- 186 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR- 186 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE-
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-
Confidence 36899999999999999999999999999988754 355557899999999999999999999999999863 222221
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
.+.+|...|.+++|+|||++|+ +++ .|++|++||..+|.+..++.+|...+..++|+|
T Consensus 187 ---------------~~~~h~~~V~~v~~~p~~~~l~-s~s------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 187 ---------------TMHGHDHNVSSVSIMPNGDHIV-SAS------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp ---------------CCCCCSSCEEEEEECSSSSEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred ---------------EEcCCCCCEEEEEEeCCCCEEE-EEe------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECC
Confidence 2336777899999999999999 565 479999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccC--------------------CCeeEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCM--------------------SDLLAAVV 291 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD--------------------g~~LAs~~ 291 (1196)
+|++||+++.|+ .|++|+.. +.... .+.. +...|.+++|+|+ |.+|++++
T Consensus 245 ~g~~l~s~s~D~------~v~vwd~~~~~~~~--~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs 315 (410)
T 1vyh_C 245 DGTLIASCSNDQ------TVRVWVVATKECKA--ELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 315 (410)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEE--EECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred CCCEEEEEcCCC------eEEEEECCCCceee--EecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence 999999999864 69999964 33322 2333 3567999999997 67899999
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
.|+ +|++|++.+... ...+..|......+.|+|++.. |..++.|| +|++
T Consensus 316 ~D~---~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~-------------------------~i~v 364 (410)
T 1vyh_C 316 RDK---TIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKF-ILSCADDK-------------------------TLRV 364 (410)
T ss_dssp TTS---EEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSC-EEEEETTT-------------------------EEEE
T ss_pred CCC---eEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCE-EEEEeCCC-------------------------eEEE
Confidence 999 999999987652 3344444434478899998765 45555444 3444
Q ss_pred eeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 372 TPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
|+++.. .+..++ .|...|++++|+|++ +.||+++.||+|++|+.
T Consensus 365 wd~~~~-----~~~~~~~~h~~~v~~l~~~~~~--~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 365 WDYKNK-----RCMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCTTS-----CCCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC-
T ss_pred EECCCC-----ceEEEEcCCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEeC
Confidence 444321 122334 488899999999999 89999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-30 Score=298.97 Aligned_cols=281 Identities=11% Similarity=0.021 Sum_probs=214.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++|+||++.|++++.||+|++||..++. +.....|...|.+++|||||++||+++.|++|++|+..-......
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~ 134 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVR 134 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcce
Confidence 3689999999999999999999999999998764 445556788999999999999999999999999987321100000
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS 233 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd 233 (1196)
. ...+.+|.+.+.++.|+++|+ ++ +++ .|++|+|||..+|+...++.+|.+.+.+++|+|+
T Consensus 135 ~-----------~~~~~~h~~~v~~~~~~~~~~-l~-s~s------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 135 V-----------SRELAGHTGYLSCCRFLDDNQ-IV-TSS------GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp E-----------EEEEECCSSCEEEEEEEETTE-EE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred e-----------EEEecCCCccEEEEEECCCCc-EE-EEE------CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 0 012336777889999999997 55 344 4789999999899999999999999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
|++|++++.|+ .|++|+. +|..... +.. +...|.+++|+|||++||+++.|+ +|++|++.+....
T Consensus 196 ~~~l~sg~~d~------~v~~wd~~~~~~~~~--~~~-h~~~v~~v~~~p~~~~l~s~s~d~---~v~iwd~~~~~~~-- 261 (340)
T 1got_B 196 TRLFVSGACDA------SAKLWDVREGMCRQT--FTG-HESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQEL-- 261 (340)
T ss_dssp SSEEEEEETTS------CEEEEETTTCSEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE--
T ss_pred CCEEEEEeCCC------cEEEEECCCCeeEEE--EcC-CcCCEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCcEE--
Confidence 99999999864 6999995 4443332 333 356799999999999999999999 9999999875421
Q ss_pred EEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-c
Q 000992 313 YEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-K 389 (1196)
Q Consensus 313 q~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~ 389 (1196)
..+..... ....+.|+|++.. |..++.+|.+ ++|++.... ....+ .
T Consensus 262 ~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~d~~i-------------------------~vwd~~~~~-----~~~~~~~ 310 (340)
T 1got_B 262 MTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNC-------------------------NVWDALKAD-----RAGVLAG 310 (340)
T ss_dssp EEECCTTCCSCEEEEEECTTSSE-EEEEETTSEE-------------------------EEEETTTCC-----EEEEEEC
T ss_pred EEEccCCcccceEEEEECCCCCE-EEEECCCCeE-------------------------EEEEcccCc-----EeeEeec
Confidence 11211111 2378899998865 5666555544 333322110 11223 4
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
|.++|.+|+|+|+| +.||+++.||+|++|+
T Consensus 311 h~~~v~~~~~s~dg--~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 311 HDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340 (340)
T ss_dssp CSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCC--CEEEEEcCCccEEecC
Confidence 88999999999999 8999999999999996
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=338.74 Aligned_cols=433 Identities=12% Similarity=0.066 Sum_probs=276.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~ 154 (1196)
+.|.+++|+||++.||+|+.||+|+||+..+.+......|...|.+++||| |++||+++.|++|++|+. ....+....
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~ 96 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF 96 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc
Confidence 589999999999999999999999999998876654334578899999999 899999999999999973 233332221
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-----------EEeccCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-----------ASSELKAF 223 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-----------~~~e~~~~ 223 (1196)
|...|.+++|+|||++|| +++ .+++|++||..++++. ....+|.+
T Consensus 97 -----------------~~~~V~~v~~sp~g~~l~-sgs------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~ 152 (902)
T 2oaj_A 97 -----------------VPGKITSIDTDASLDWML-IGL------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS 152 (902)
T ss_dssp -----------------CSSCEEEEECCTTCSEEE-EEE------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred -----------------CCCCEEEEEECCCCCEEE-EEc------CCCcEEEEECCCCccccceeccccccccccccCCC
Confidence 235689999999999999 676 4689999999777764 12356788
Q ss_pred ceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEec---------------cCCCCcEEEEEEccCCCe
Q 000992 224 MGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERNG-LERSSFDIN---------------EQIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 224 ~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~---------------~~~~~~V~~laWSpDg~~ 286 (1196)
.|.+++|+|+ +.+||+++.+ ..| +|+... .....|... ..+...|.+++|||||++
T Consensus 153 ~V~sl~~sp~~~~~l~~g~~d------g~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 153 PIVSIQWNPRDIGTVLISYEY------VTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp CCCEEEEETTEEEEEEEECSS------CEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred CeEEEEEccCCCCEEEEEeCC------CcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 9999999996 5788988875 468 999643 333323211 011356999999999999
Q ss_pred eEEEEccCCcceEEEEEecCCEEEEEEEEE---Ee------------cCC-cEEEEEcc----CCCceEEEEecC-----
Q 000992 287 LAAVVRFEEYDSVKICFFSNNHWYLKYEIR---YL------------RRD-GIRFMWHP----TKPLQLICWTLD----- 341 (1196)
Q Consensus 287 LAs~~~d~~~~~V~lW~~~n~~wylkq~l~---~~------------~~~-~~~v~Wsp----~~~~~L~~~~~~----- 341 (1196)
||+++.|+ +|++|++.+......+.+. .+ ... ...+.|+| +++..|..+..+
T Consensus 226 lasgs~Dg---~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 226 IITIHEDN---SLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN 302 (902)
T ss_dssp EEEEETTC---CEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred EEEEECCC---eEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence 99999999 9999999876532211110 01 112 37899965 333444544332
Q ss_pred CcEEEEEEE-------------------------Ee---------ee--c----------CCCeeEEEEcCCEEEEeecc
Q 000992 342 GQITTYNFI-------------------------WT---------TA--V----------MENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 342 g~~~~~~~~-------------------------~~---------~~--~----------~d~~~v~viDg~~l~lt~l~ 375 (1196)
+.+..+++. +. +. + ++..+++...+..|++|.+.
T Consensus 303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~ 382 (902)
T 2oaj_A 303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP 382 (902)
T ss_dssp CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence 133333211 10 00 0 11134455555678888874
Q ss_pred ccC-C-C------------CCcee----------------------eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEE
Q 000992 376 LSL-M-P------------PPMYL----------------------FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLC 418 (1196)
Q Consensus 376 ~~~-v-p------------ppm~~----------------------~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~ 418 (1196)
... . + ++... ..+ +|...|.+|+|+|++ +.||+++.|++|+
T Consensus 383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg--~~laSgs~DgtVr 460 (902)
T 2oaj_A 383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG--TAFITGHSNGSVR 460 (902)
T ss_dssp TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE--EEEEEEETTSEEE
T ss_pred CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC--cEEEEecCCCcEE
Confidence 221 1 1 11000 001 133455667778998 8999999999999
Q ss_pred EEeCCCCCccccccCCceeeee--ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEeeccCCccc----cchhhh
Q 000992 419 VVDLPAPDMLEDLEGTEFVVEA--CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGATLNEDGLL----GFYAQE 492 (1196)
Q Consensus 419 lw~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 492 (1196)
+|++.+.. +.. ...+.... .....+...|..++|+|||++||+++.+ .++.+|.+.-...-.. ..-...
T Consensus 461 lWd~~~g~-~~~--~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~D--gtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 461 IYDASHGD-IQD--NASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIET--GDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp EEESSCCT-TTT--TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETT--SCEEEEEEEECCC-------------
T ss_pred EEECCCcc-ccC--CceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecC--cEEEEEEecCccccCccccCCCcccc
Confidence 99998652 211 00111100 0001355689999999999999999876 6899998852100000 000000
Q ss_pred hh-----hhcccccc------cccccccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEecc
Q 000992 493 IE-----LACSEDHV------QGLLTCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSR 553 (1196)
Q Consensus 493 ~~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~ 553 (1196)
+. +..+.+.. .......+.+. +.....+.+.|.++++|| ++ .++....||+|..|+..
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~ 604 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP-STAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRR 604 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEE-EEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETT
T ss_pred eeeeeccccCCccccccccccCCCCCCCccce-eEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECC
Confidence 00 00000000 00000001111 223345789999999998 88 99999999999999864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-30 Score=296.50 Aligned_cols=279 Identities=12% Similarity=0.117 Sum_probs=216.6
Q ss_pred CCCEEEEEEccC----CCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-c
Q 000992 75 GDSITAFDYLME----KEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-D 146 (1196)
Q Consensus 75 ~~~v~~v~~spd----~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~ 146 (1196)
.+.|.+++|+|+ ++.|++|+.||+|++|+..++... ....|..+|.+++|+|++.+||+++.|++|++|+. .
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~ 111 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 468999999985 679999999999999999876543 34557899999999999999999999999999873 2
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
...+.... .+...+.+++|+|||++|| +++ .+++|++|+..+|+.......+...+.
T Consensus 112 ~~~~~~~~----------------~~~~~~~~~~~spdg~~l~-~g~------~dg~v~i~~~~~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 112 GKQIKSID----------------AGPVDAWTLAFSPDSQYLA-TGT------HVGKVNIFGVESGKKEYSLDTRGKFIL 168 (321)
T ss_dssp TEEEEEEE----------------CCTTCCCCEEECTTSSEEE-EEC------TTSEEEEEETTTCSEEEEEECSSSCEE
T ss_pred CCEEEEEe----------------CCCccEEEEEECCCCCEEE-EEc------CCCcEEEEEcCCCceeEEecCCCceEE
Confidence 33322222 2334568899999999999 565 468999999999999988888888999
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
+++|+|+|++||+++.|+ .|++|+. +|.... .+.. +...|.+++|||||++||+++.|+ +|++|++.
T Consensus 169 ~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~--~~~~-h~~~v~~l~~spd~~~l~s~s~dg---~i~iwd~~ 236 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDG------IINIFDIATGKLLH--TLEG-HAMPIRSLTFSPDSQLLVTASDDG---YIKIYDVQ 236 (321)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCCCEEEECTTSCEEEEECTTS---CEEEEETT
T ss_pred EEEECCCCCEEEEEcCCC------eEEEEECCCCcEEE--EEcc-cCCceeEEEEcCCCCEEEEEcCCC---eEEEEECC
Confidence 999999999999999864 6999995 444333 2333 356799999999999999999999 99999998
Q ss_pred CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
+... ...+..+......+.|+|++.. |..++.||.+ ++|+++. ..+.
T Consensus 237 ~~~~--~~~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v-------------------------~iwd~~~-----~~~~ 283 (321)
T 3ow8_A 237 HANL--AGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSV-------------------------KVWDVGT-----RTCV 283 (321)
T ss_dssp TCCE--EEEECCCSSCEEEEEECTTSSE-EEEEETTSCE-------------------------EEEETTT-----TEEE
T ss_pred Ccce--eEEEcCCCCceEEEEECCCCCE-EEEEeCCCcE-------------------------EEEeCCC-----CEEE
Confidence 7542 3444444434488999998864 5666555554 3333321 1122
Q ss_pred eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
+++ .|.+.|++|+|+|+| +.|++++.||+|++|+.+
T Consensus 284 ~~~~~h~~~v~~v~~s~~g--~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYNGNG--SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEECCCSSCEEEEEECTTS--SEEEEEETTCCEEEEECC
T ss_pred EEEcCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEeCC
Confidence 333 478899999999999 899999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.2e-31 Score=304.50 Aligned_cols=318 Identities=14% Similarity=0.124 Sum_probs=210.2
Q ss_pred eeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcE
Q 000992 27 ALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLL 99 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I 99 (1196)
..|.-++.+|+.+. ++....|++. ... ...| ...|.+|+|||||+.||+++. ||+|
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p--~~~-----------p~~H----~~~V~~v~fSpDG~~las~s~d~~~~wd~~v 72 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRP--VTA-----------PACM----EVQIGAVRYRRDGALLLAASSLSSRTWGGSI 72 (357)
T ss_dssp -------------------------------------------CC----CSEEEEEEECSSSCEEEEEECSSSSSCCEEE
T ss_pred CCCCCccceEEecCCCccccccCCC--CCC-----------cccc----cCCEEEEEECCCCCEEEEEcCCCCccccCeE
Confidence 45655666666543 5556777761 110 1122 357999999999999999998 7889
Q ss_pred EEEECCCCeE-----EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNAT-----EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~~-----e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.+|+..++.. .....|..+|.+++||||+++| +++.||+|++|+ .......... .....+|.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd----~~~~~~~~~~-------~~~~~~h~~ 140 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWE----ILEKESLLVN-------KFAKYEHDD 140 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC------------CCC-------CEEECCCSS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEee----ccccceeEEE-------eeccCCCCC
Confidence 9999866432 2233468899999999998655 578899998875 2221111100 011226778
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIV 253 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~ 253 (1196)
.|.+++|+|||++|| +++ .+++|+|||..+|++...+.+|.+.+.+++|+|+|. ++++++.|+ .|+
T Consensus 141 ~V~~v~~spdg~~l~-sgs------~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg------~v~ 207 (357)
T 4g56_B 141 IVKTLSVFSDGTQAV-SGG------KDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG------RIL 207 (357)
T ss_dssp CEEEEEECSSSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTS------CEE
T ss_pred CEEEEEECCCCCEEE-EEe------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCC------ceE
Confidence 899999999999999 565 468999999999999999999999999999999986 788888764 699
Q ss_pred EEeCC-CeeEEEEEeccCCCCcEEEEEEccCC-CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCC
Q 000992 254 FYERN-GLERSSFDINEQIDSTVELLKWNCMS-DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTK 331 (1196)
Q Consensus 254 ~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg-~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~ 331 (1196)
+|+.. |.....+.+ ..+...|.+++|+|++ .+||+++.|+ +|++|++.+..- .+.+..+......+.|+|++
T Consensus 208 ~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~ 281 (357)
T 4g56_B 208 LWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETG---NVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHS 281 (357)
T ss_dssp ECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEESSCGGG--CEEECCCSSCEEEEEECSSS
T ss_pred EEECCCCceeeeeee-ccccccccchhhhhcccceEEEeeccc---ceeEEECCCCcE--eEEEeccceeEEEEEEcCCC
Confidence 99853 332221111 1234579999999985 6899999998 899999987542 23444444444889999988
Q ss_pred CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEec-CCCCCEEEE
Q 000992 332 PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYS-KSSKNCLAA 410 (1196)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafsp-dg~~~~lAs 410 (1196)
...|+.++.||.+. +|+++.. ...+.+.|.+.|++|+||| |+ ++||+
T Consensus 282 ~~~lasgs~D~~i~-------------------------iwd~~~~-----~~~~~~~H~~~V~~vafsP~d~--~~l~s 329 (357)
T 4g56_B 282 SPFLASISEDCTVA-------------------------VLDADFS-----EVFRDLSHRDFVTGVAWSPLDH--SKFTT 329 (357)
T ss_dssp SCCEEEEETTSCEE-------------------------EECTTSC-----EEEEECCCSSCEEEEEECSSST--TEEEE
T ss_pred CCEEEEEeCCCEEE-------------------------EEECCCC-----cEeEECCCCCCEEEEEEeCCCC--CEEEE
Confidence 66566666566543 3332211 1223456899999999999 67 89999
Q ss_pred EECCCcEEEEeCCC
Q 000992 411 ILSDGCLCVVDLPA 424 (1196)
Q Consensus 411 ~~~dg~v~lw~~~~ 424 (1196)
++.||+|++|++..
T Consensus 330 ~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 330 VGWDHKVLHHHLPS 343 (357)
T ss_dssp EETTSCEEEEECC-
T ss_pred EcCCCeEEEEECCC
Confidence 99999999999874
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.5e-30 Score=299.86 Aligned_cols=286 Identities=13% Similarity=0.051 Sum_probs=209.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCC------------CeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDG------------NATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVM 143 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~------------~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~ 143 (1196)
..|.+++|+|||+.|++++ |+++++||... +.....-.++.+|.+++||||+ .|++++.||+|++|
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW 108 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW 108 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence 5699999999999999887 77888886321 1121222357889999999995 67899999999998
Q ss_pred ecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 THD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+.. .+.+..... ...+|.+.|.+++|+|||++|| +++ .|++|||||..+|+++.++.+|.
T Consensus 109 d~~~~~~~~~~~~------------~~~~H~~~V~~v~~spdg~~l~-sgs------~d~~i~iwd~~~~~~~~~~~~h~ 169 (344)
T 4gqb_B 109 ELDENETLIVSKF------------CKYEHDDIVSTVSVLSSGTQAV-SGS------KDICIKVWDLAQQVVLSSYRAHA 169 (344)
T ss_dssp EECTTSSCEEEEE------------EEECCSSCEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCS
T ss_pred eccCCCceeEeec------------cccCCCCCEEEEEECCCCCEEE-EEe------CCCeEEEEECCCCcEEEEEcCcC
Confidence 632 222211111 1226778899999999999999 565 46899999999999999999999
Q ss_pred CceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCcceE
Q 000992 223 FMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSV 299 (1196)
Q Consensus 223 ~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpD-g~~LAs~~~d~~~~~V 299 (1196)
+.|.+++|+|+|. ++|+++.|+ .|++|+. +|.....+... .+...+.+++|+|+ +++||+++.|+ +|
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg---~v 239 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENG---TV 239 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS------CEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTS---EE
T ss_pred CceEEEEecCCCCCceeeecccc------ccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCC---cE
Confidence 9999999999995 789999864 6999995 44433332212 12346899999995 56899999999 99
Q ss_pred EEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
+|||+.+... .+++..|......+.|+|++...|+.++.||.+. +|+++..
T Consensus 240 ~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~-------------------------vwd~~~~-- 290 (344)
T 4gqb_B 240 SLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA-------------------------VLDSSLS-- 290 (344)
T ss_dssp EEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE-------------------------EECTTCC--
T ss_pred EEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE-------------------------EEECCCC--
Confidence 9999987542 3455555444588999999866566666666553 2322211
Q ss_pred CCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 380 PPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 380 pppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.......|.+.|++|+|||++. .+||+++.||+|++|++++.
T Consensus 291 ---~~~~~~~H~~~V~~v~~sp~~~-~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 291 ---ELFRSQAHRDFVRDATWSPLNH-SLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ---EEEEECCCSSCEEEEEECSSST-TEEEEEETTSCEEEEECCC-
T ss_pred ---cEEEEcCCCCCEEEEEEeCCCC-eEEEEEcCCCeEEEEECCCC
Confidence 1112235889999999999983 57889999999999999763
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=288.42 Aligned_cols=312 Identities=16% Similarity=0.198 Sum_probs=223.1
Q ss_pred eecC-cEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEee
Q 000992 114 RVEG-GVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLS 192 (1196)
Q Consensus 114 ~~~~-~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvs 192 (1196)
.|.+ .|++++|||||++||+++.|++|++|+........... ...+|...|.+++|+|||++|| ++
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~------------~~~~h~~~v~~~~~sp~g~~l~-s~ 79 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV------------LSEGHQRTVRKVAWSPCGNYLA-SA 79 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE------------ECSSCSSCEEEEEECTTSSEEE-EE
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee------------eccccCCcEEEEEECCCCCEEE-EE
Confidence 3455 89999999999999999999999999643221110000 0125677899999999999999 56
Q ss_pred ccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEE-EEec
Q 000992 193 EFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSS-FDIN 268 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~-f~l~ 268 (1196)
+ .|++++||+..++ ++..++++|.+.+.+++|+|+|++||+++.|+ .|++|+..... ... ..+.
T Consensus 80 s------~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~ 147 (345)
T 3fm0_A 80 S------FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLN 147 (345)
T ss_dssp E------TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEEC
T ss_pred E------CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEec
Confidence 5 4689999998666 45677889999999999999999999999874 59999964321 111 1232
Q ss_pred cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 269 EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
.+...|..++|+|||++||+++.|+ +|++|+..+..|.....+..+......+.|+|++.. |+.++.||.+.+++
T Consensus 148 -~h~~~v~~~~~~p~~~~l~s~s~d~---~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 148 -SHTQDVKHVVWHPSQELLASASYDD---TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIWR 222 (345)
T ss_dssp -CCCSCEEEEEECSSSSCEEEEETTS---CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred -CcCCCeEEEEECCCCCEEEEEeCCC---cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCE-EEEEeCCCeEEEec
Confidence 3456799999999999999999999 999999998877655666555444588999999865 78888888886543
Q ss_pred EEEeee-cCC-CeeEEEEcCCEEEEeeccccCCCCCceeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 349 FIWTTA-VME-NSTALVIDGSKILVTPLSLSLMPPPMYLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 349 ~~~~~~-~~d-~~~v~viDg~~l~lt~l~~~~vpppm~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.. +.. ......... +...+..++ .|...|++|+|+|++ ..||+++.|++|++|+...
T Consensus 223 ----~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 223 ----QYLPGNEQGVACSGSD-------------PSWKCICTLSGFHSRTIYDIAWCQLT--GALATACGDDAIRVFQEDP 283 (345)
T ss_dssp ----EECTTCTTCCCCC----------------CEEEEEEEECSSCSSCEEEEEECTTT--CCEEEEETTSCEEEEEECT
T ss_pred ----cccCCCCccceeeccC-------------CccceeEEecCCCCCcEEEEEEecCC--CEEEEEeCCCeEEEEEeCC
Confidence 32 111 000000000 001122223 267889999999999 8999999999999999875
Q ss_pred CCccccccCCceeeeeecccccCCcEEEEEEecCC-eEEEEEecCCCCceEEEEee
Q 000992 425 PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH-LLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~-~lla~~~~~~~~~~~~~~~~ 479 (1196)
..... ...+.........|.+.|..++|+|++ .+||+++.+ .++.+|.+.
T Consensus 284 ~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D--g~v~~W~~~ 334 (345)
T 3fm0_A 284 NSDPQ---QPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD--GEVAFWKYQ 334 (345)
T ss_dssp TSCTT---SCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT--SCEEEEEEC
T ss_pred CCCcc---eeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC--CcEEEEEec
Confidence 32210 011111111123466789999999997 489998876 689999873
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=294.88 Aligned_cols=284 Identities=13% Similarity=0.082 Sum_probs=216.1
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++|+||++.|++|+.||+|++||..++.. ..+..+...|.+++|||||..||+++.|+++.+|...++.....
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~ 143 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM 143 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc
Confidence 36899999999999999999999999999887654 35555678899999999999999999999999997543311100
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP- 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP- 232 (1196)
. . . ...+.+|.+.+..++|+|||.+|+ +++ .|++|+|||.++|++..++.+|...+.+++|+|
T Consensus 144 ~-~------~--~~~~~~h~~~v~~~~~~~~~~~l~-t~s------~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 144 A-A------K--KKSVAMHTNYLSACSFTNSDMQIL-TAS------GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp G-G------G--CEEEEECSSCEEEEEECSSSSEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred c-c------c--ceeeeccCCcEEEEEEeCCCCEEE-EEe------CCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 0 0 0 012335778899999999999999 565 479999999999999999999999999999988
Q ss_pred -CCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 -SGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 -dG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+|++|++++.|+ .|++|+. +|..... +.. +...|.+++|+|+|..||+++.|+ +|++|++.+....
T Consensus 208 ~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~--~~~-h~~~v~~v~~~p~~~~l~s~s~D~---~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 208 ETGNTFVSGGCDK------KAMVWDMRSGQCVQA--FET-HESDVNSVRYYPSGDAFASGSDDA---TCRLYDLRADREV 275 (354)
T ss_dssp SSCCEEEEEETTS------CEEEEETTTCCEEEE--ECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCC------eEEEEECCCCcEEEE--ecC-CCCCeEEEEEeCCCCEEEEEeCCC---eEEEEECCCCcEE
Confidence 589999999874 6999995 4443332 332 456899999999999999999999 9999999875421
Q ss_pred EEEEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 311 LKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 311 lkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
..+..+.. ....+.|+|++.. |.++..+|.+. +|++.... ....+
T Consensus 276 --~~~~~~~~~~~~~~~~~s~~g~~-l~~g~~d~~i~-------------------------vwd~~~~~-----~~~~l 322 (354)
T 2pbi_B 276 --AIYSKESIIFGASSVDFSLSGRL-LFAGYNDYTIN-------------------------VWDVLKGS-----RVSIL 322 (354)
T ss_dssp --EEECCTTCCSCEEEEEECTTSSE-EEEEETTSCEE-------------------------EEETTTCS-----EEEEE
T ss_pred --EEEcCCCcccceeEEEEeCCCCE-EEEEECCCcEE-------------------------EEECCCCc-----eEEEE
Confidence 11111111 1267889998764 56665555553 33322110 11222
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
.|.+.|.+++||||| +.||+++.||+|++|+
T Consensus 323 ~~h~~~v~~l~~spdg--~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 FGHENRVSTLRVSPDG--TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCCSSCEEEEEECTTS--SCEEEEETTSEEEEEC
T ss_pred ECCCCcEEEEEECCCC--CEEEEEcCCCCEEecC
Confidence 488999999999999 8999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=285.16 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=218.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.+.|.+++|+||++.|++++.||+|++||..++.. ..+..|...|.+++|+|||++||+++.|++|++|+. ....+..
T Consensus 13 ~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 36899999999999999999999999999998754 455567889999999999999999999999999873 2332222
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
|.+|.+.|.+++|+|||++|| +++ .|++|+|||..++ .+..++++|.+.+.+++|+
T Consensus 93 ----------------~~~h~~~v~~~~~~~~~~~l~-sgs------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~ 149 (304)
T 2ynn_A 93 ----------------FEAHPDYIRSIAVHPTKPYVL-SGS------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149 (304)
T ss_dssp ----------------EECCSSCEEEEEECSSSSEEE-EEE------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEEC
T ss_pred ----------------EeCCCCcEEEEEEcCCCCEEE-EEC------CCCeEEEEECCCCcchhhhhcccCCcEEEEEEC
Confidence 235677899999999999999 565 4799999998666 5667788999999999999
Q ss_pred C-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc--CCCeeEEEEccCCcceEEEEEecCCE
Q 000992 232 P-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC--MSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 232 P-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp--Dg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
| ++++||+++.| ..|++|+..... ..+.+..++...|..++|+| |+++||+++.|+ +|++|++.+..
T Consensus 150 p~~~~~l~sgs~D------~~v~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~---~i~iWd~~~~~ 219 (304)
T 2ynn_A 150 PKDPSTFASGCLD------RTVKVWSLGQST-PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL---TIKIWDYQTKS 219 (304)
T ss_dssp TTCTTEEEEEETT------SEEEEEETTCSS-CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS---EEEEEETTTTE
T ss_pred CCCCCEEEEEeCC------CeEEEEECCCCC-ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC---eEEEEeCCCCc
Confidence 9 68999999986 479999964221 11233333445799999987 788999999999 99999986532
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
. +....
T Consensus 220 ~-------------------------~~~~~------------------------------------------------- 225 (304)
T 2ynn_A 220 C-------------------------VATLE------------------------------------------------- 225 (304)
T ss_dssp E-------------------------EEEEE-------------------------------------------------
T ss_pred c-------------------------ceeeC-------------------------------------------------
Confidence 0 00000
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCe--EEEEEe
Q 000992 389 KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHL--LLSVSH 466 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~--lla~~~ 466 (1196)
.|...|.+++|+|++ +.||+++.||+|++|+..+......+.+ +...++.++|+|++. ++|+++
T Consensus 226 ~h~~~v~~~~~~p~~--~~l~s~s~Dg~i~iWd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTL--PIIISGSEDGTLKIWNSSTYKVEKTLNV------------GLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp CCSSCEEEEEECSSS--SEEEEEETTSCEEEEETTTCCEEEEECC------------SSSSEEEEEECTTCGGGCEEEEE
T ss_pred CCCCCEEEEEECCCC--CEEEEEcCCCeEEEEECCCCceeeeccC------------CCccEEEEEECCCCCceEEEEec
Confidence 145678899999999 8999999999999999986544433322 345789999999874 578777
Q ss_pred cCCCCceEEEEe
Q 000992 467 HGPRHSNYFRGA 478 (1196)
Q Consensus 467 ~~~~~~~~~~~~ 478 (1196)
+ +...++.+
T Consensus 292 ~---~g~~~~~~ 300 (304)
T 2ynn_A 292 D---NGFTVLSL 300 (304)
T ss_dssp T---TEEEEEEC
T ss_pred C---CceEEEEe
Confidence 6 45666665
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=286.62 Aligned_cols=293 Identities=16% Similarity=0.177 Sum_probs=203.4
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.+.|.+++|+|+ .||+++.||+|++|+..++. .... +.|.+.|.+++|||||++||+++.|++|++|+..-..
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~ 91 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESA 91 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC----
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCc
Confidence 468999999998 99999999999999998742 2333 3478899999999999999999999999999642110
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CC---cEEEEeccCCCce
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SG---TLQASSELKAFMG 225 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G---~l~~~~e~~~~~v 225 (1196)
...... .. ...+.+|.+.|.+++|+|||++|| +++ .|++|+|||.. .+ ++..++.+|.+.+
T Consensus 92 ~~~~~~------~~--~~~~~~h~~~V~~v~~sp~g~~la-s~s------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 92 DRTFEM------DL--LAIIEGHENEVKGVAWSNDGYYLA-TCS------RDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ---CCC------EE--EEEEC----CEEEEEECTTSCEEE-EEE------TTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred Cccccc------ee--EEEEcCCCCcEEEEEECCCCCEEE-EEe------CCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 000000 00 012346778899999999999999 565 46999999983 22 5677888899999
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccC--CCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCM--SDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD--g~~LAs~~~d~~~~~V~lW 302 (1196)
.+++|+|+|++||+++.|. .|++|+.. +.......+.. +...|.+++|+|+ +..||+++.|+ +|++|
T Consensus 157 ~~v~~~p~~~~l~s~s~D~------~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~D~---~v~iw 226 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDD------TVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDS---TVRVW 226 (330)
T ss_dssp EEEEECSSSSEEEEEETTS------CEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCEEEEEETTS---CEEEE
T ss_pred EEEEECCCCCEEEEEcCCC------eEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeEEEEEeCCC---eEEEE
Confidence 9999999999999999874 69999853 21111123333 4578999999999 77999999999 99999
Q ss_pred EecCC------EEEEEEEEEE-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecc
Q 000992 303 FFSNN------HWYLKYEIRY-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 303 ~~~n~------~wylkq~l~~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1196)
++.+. .|.....+.. +......+.|+|++ .|..+..+|.+.++ +.. +|..-.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw----~~~----------~~~~~~----- 285 (330)
T 2hes_X 227 KYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVY----EEV----------DGEWKV----- 285 (330)
T ss_dssp EEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEE----EEE----------TTEEEE-----
T ss_pred EecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEE----EcC----------CCceEE-----
Confidence 98642 2322222222 22233788898654 36777777776543 221 111000
Q ss_pred ccCCCCCceeeeecCCC-CEEEEEEec--CCCCCEEEEEECCCcEEEEeCCC
Q 000992 376 LSLMPPPMYLFSLKFPT-AVTEMAFYS--KSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 376 ~~~vpppm~~~~l~~~~-~V~~Vafsp--dg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.......|.. .|++|+|+| ++ ++||+++.||+|+||++..
T Consensus 286 -------~~~~~~~h~~~~v~~v~~~~~~~~--~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 286 -------FAKRALCHGVYEINVVKWLELNGK--TILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -------EEEESCTTTTSCEEEEEEC-------CCEEEEETTSEEEEEEC--
T ss_pred -------EeccccccccceEEEEEEecCCCc--eEEEEecCCCcEEEEEecc
Confidence 0001123665 899999999 56 8999999999999999863
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=287.85 Aligned_cols=294 Identities=14% Similarity=0.089 Sum_probs=211.5
Q ss_pred cccccCCCCCCEEEEEE-----cc-CCCEEEEEECCCcEEEEECCCC-------e-EEEeeeecCcEEEEEECCCCCEEE
Q 000992 67 IEHIDLEPGDSITAFDY-----LM-EKEALIVGTSSGLLLLHSVDGN-------A-TEVVGRVEGGVRFISPSPDGDLLG 132 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~-----sp-d~~~La~as~dG~I~lw~~~~~-------~-~e~vg~~~~~I~~~awSPDg~~LA 132 (1196)
+.+| .+.|.+++| +| |++.|++|+.||+|++||..++ . ...+..|...|.+++|||||.+||
T Consensus 17 l~gH----~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 17 LEGH----SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EECC----SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eccc----hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 4555 468999999 77 9999999999999999998642 1 234455789999999999999999
Q ss_pred EEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 133 VTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 133 ~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
+++.|++|++|+. ....+. .|.+|...|.+++|+|||++|+ +++ .|++|+|||. .
T Consensus 93 s~s~D~~v~lwd~~~~~~~~----------------~~~~h~~~v~~v~~sp~~~~l~-s~~------~d~~i~~wd~-~ 148 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYK----------------RFVGHQSEVYSVAFSPDNRQIL-SAG------AEREIKLWNI-L 148 (343)
T ss_dssp EEETTSEEEEEETTSSCEEE----------------EEECCCSCEEEEEECSSTTEEE-EEE------TTSCEEEEES-S
T ss_pred EEcCCCcEEEEECCCCcEEE----------------EEcCCCCcEEEEEECCCCCEEE-EEc------CCCEEEEEec-c
Confidence 9999999999863 232222 1235677899999999999999 565 4699999999 5
Q ss_pred CcEEEEec---cCCCceeEEEEcCCC----------CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEE
Q 000992 212 GTLQASSE---LKAFMGAVLEWMPSG----------ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELL 278 (1196)
Q Consensus 212 G~l~~~~e---~~~~~v~slawsPdG----------~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~l 278 (1196)
+....... +|...+.+++|+|++ .+||+++.| ..|++|+.++..... +.. +...|.++
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~--~~~-h~~~v~~~ 219 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD------GRLKVWNTNFQIRYT--FKA-HESNVNHL 219 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT------SEEEEEETTTEEEEE--EEC-CSSCEEEE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC------CEEEEEcCCCceeEE--EcC-ccccceEE
Confidence 66555543 677889999999998 789999986 479999987654433 333 35689999
Q ss_pred EEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCC
Q 000992 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358 (1196)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~ 358 (1196)
+|||||++||+++.|+ +|++|++.+... ....+. +......+.|+|++.. +..+ .++.+. .|++..
T Consensus 220 ~~s~~g~~l~sgs~dg---~v~iwd~~~~~~-~~~~~~-~~~~v~~v~~sp~~~~-la~~-~d~~v~----iw~~~~--- 285 (343)
T 2xzm_R 220 SISPNGKYIATGGKDK---KLLIWDILNLTY-PQREFD-AGSTINQIAFNPKLQW-VAVG-TDQGVK----IFNLMT--- 285 (343)
T ss_dssp EECTTSSEEEEEETTC---EEEEEESSCCSS-CSEEEE-CSSCEEEEEECSSSCE-EEEE-ESSCEE----EEESSS---
T ss_pred EECCCCCEEEEEcCCC---eEEEEECCCCcc-cceeec-CCCcEEEEEECCCCCE-EEEE-CCCCEE----EEEeCC---
Confidence 9999999999999999 999999843221 111111 1122378999998753 4433 344443 333320
Q ss_pred eeEEEEcCCEEEEeeccccCCCCCce-ee-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 359 STALVIDGSKILVTPLSLSLMPPPMY-LF-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vpppm~-~~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+..+.+..+. +.|.. .. ...|...|.+|+|+|+| +.||+++.||+|++|+..+
T Consensus 286 -------~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 286 -------QSKAPVCTIE----AEPITKAEGQKGKNPQCTSLAWNALG--KKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp -------CCSCSEEECC----CCSGGGBTTBCCSCCCEEEEEECSSS--CCEEEEETTSEEEEEEEEE
T ss_pred -------CCCCceEEee----cCcchhhhhhcCCCCceEEEEECCCC--CeEEEecCCceEEEEEEEc
Confidence 0000000010 01110 00 11467789999999999 8999999999999999764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=284.14 Aligned_cols=291 Identities=13% Similarity=0.115 Sum_probs=217.0
Q ss_pred cccccCCCCCCEEEEEEccCC-CEEEEEECCCcEEEEECCCC------eEEEeeeecCcEEEEEECCCCCEEEEEeCCce
Q 000992 67 IEHIDLEPGDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGN------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t 139 (1196)
|.+| .+.|.+++|+|++ +.|++++.||+|++|+..+. .+.....|...|.+++|||||++||+++.|++
T Consensus 13 l~gH----~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 13 LEGH----NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp ECCC----SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred Eccc----cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 5555 4689999999975 89999999999999998641 13344557899999999999999999999999
Q ss_pred EEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 140 ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 140 V~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
|++|+. ..+.+. .|.+|...|.+++|+|+|.+|+ +++ .|++|+|||. .|+...++
T Consensus 89 v~~wd~~~~~~~~----------------~~~~h~~~v~~~~~~~~~~~l~-s~s------~D~~i~vwd~-~~~~~~~~ 144 (319)
T 3frx_A 89 LRLWDVATGETYQ----------------RFVGHKSDVMSVDIDKKASMII-SGS------RDKTIKVWTI-KGQCLATL 144 (319)
T ss_dssp EEEEETTTTEEEE----------------EEECCSSCEEEEEECTTSCEEE-EEE------TTSCEEEEET-TSCEEEEE
T ss_pred EEEEECCCCCeeE----------------EEccCCCcEEEEEEcCCCCEEE-EEe------CCCeEEEEEC-CCCeEEEE
Confidence 999873 232222 2336677899999999999999 565 4799999999 78888899
Q ss_pred ccCCCceeEEEEcCC------CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000992 219 ELKAFMGAVLEWMPS------GANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 219 e~~~~~v~slawsPd------G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.+|.+.+.+++|+|. +.+|++++.|. .|++|+.+.... ...+.. +...|.+++|||||++||+++.
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~~~~~-~~~~~~-h~~~v~~~~~sp~g~~l~s~~~ 216 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLNQFQI-EADFIG-HNSNINTLTASPDGTLIASAGK 216 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTS------CEEEEETTTTEE-EEEECC-CCSCEEEEEECTTSSEEEEEET
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECCcchh-heeecC-CCCcEEEEEEcCCCCEEEEEeC
Confidence 999999999999995 55899999864 699999754322 112333 4568999999999999999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
|+ +|+||++.+..- ...+.. ......+.|+|++.. |...+.+ .+. +|+.. ... .+.
T Consensus 217 dg---~i~iwd~~~~~~--~~~~~~-~~~v~~~~~sp~~~~-la~~~~~-~i~----v~~~~-----------~~~-~~~ 272 (319)
T 3frx_A 217 DG---EIMLWNLAAKKA--MYTLSA-QDEVFSLAFSPNRYW-LAAATAT-GIK----VFSLD-----------PQY-LVD 272 (319)
T ss_dssp TC---EEEEEETTTTEE--EEEEEC-CSCEEEEEECSSSSE-EEEEETT-EEE----EEEET-----------TEE-EEE
T ss_pred CC---eEEEEECCCCcE--EEEecC-CCcEEEEEEcCCCCE-EEEEcCC-CcE----EEEeC-----------cCe-eee
Confidence 99 999999987652 223332 223488999999865 5555533 332 23321 111 111
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.++ +........+...|.+++||||| +.|++++.||+|++|++.+
T Consensus 273 ~~~-----~~~~~~~~~~~~~v~~~~~spdg--~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 273 DLR-----PEFAGYSKAAEPHAVSLAWSADG--QTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEC-----CCCTTCCGGGCCCEEEEEECTTS--SEEEEEETTSCEEEEEEEE
T ss_pred ccC-----ccccccccCcCcceeEEEECCCC--CEEEEeecCceEEEEEEee
Confidence 121 11111122356789999999999 9999999999999999864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-29 Score=285.08 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=216.1
Q ss_pred ceeEEeeecC----CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC
Q 000992 22 ILQFSALDIE----QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~----~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG 97 (1196)
.+.+++|.++ ++.|++++.|+.|..|+. ..+...... .+.+| ...|.+++|+|++..+++++.||
T Consensus 34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~--~~~~~~~~~-----~l~gh----~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKW--RDERLDLQW-----SLEGH----QLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp CEEEEEEC-------CEEEEEETTSCEEEEEE--ETTEEEEEE-----EECCC----SSCEEEEEECSSSSEEEEEETTS
T ss_pred cEEEEEEecCCCCCCCEEEEEcCCCCEEEEEC--CCCCeeeee-----eeccC----CCCEEEEEECCCCCEEEEEeCCC
Confidence 7899999764 678999999999999998 333321111 14444 35799999999999999999999
Q ss_pred cEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCC
Q 000992 98 LLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+|++||..+++. ..+..+...|.+++|||||++||+++.|++|.+|+.. ....... ..+...
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~----------------~~~~~~ 166 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL----------------DTRGKF 166 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE----------------ECSSSC
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe----------------cCCCce
Confidence 999999988754 4555567789999999999999999999999998732 2221111 133456
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+.+++|+|||++|| +++ .|++|+|||..+|++..++++|.+.+.+++|+|+|++||+++.|. .|++|
T Consensus 167 v~~~~~spdg~~la-sg~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg------~i~iw 233 (321)
T 3ow8_A 167 ILSIAYSPDGKYLA-SGA------IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG------YIKIY 233 (321)
T ss_dssp EEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS------CEEEE
T ss_pred EEEEEECCCCCEEE-EEc------CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC------eEEEE
Confidence 79999999999999 565 468999999989999999999999999999999999999999864 69999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. +.... .+.. +...|.+++|+|||++||+++.|+ +|++|++.+... .+++..+......+.|+|++..
T Consensus 234 d~~~~~~~~--~~~~-h~~~v~~~~~sp~~~~l~s~s~D~---~v~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~g~~- 304 (321)
T 3ow8_A 234 DVQHANLAG--TLSG-HASWVLNVAFCPDDTHFVSSSSDK---SVKVWDVGTRTC--VHTFFDHQDQVWGVKYNGNGSK- 304 (321)
T ss_dssp ETTTCCEEE--EECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSE-
T ss_pred ECCCcceeE--EEcC-CCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCEE--EEEEcCCCCcEEEEEECCCCCE-
Confidence 964 33333 3333 356799999999999999999999 999999988652 3444444334488999998865
Q ss_pred EEEEecCCcEEEE
Q 000992 335 LICWTLDGQITTY 347 (1196)
Q Consensus 335 L~~~~~~g~~~~~ 347 (1196)
|..+..||.+.++
T Consensus 305 l~s~~~d~~i~vw 317 (321)
T 3ow8_A 305 IVSVGDDQEIHIY 317 (321)
T ss_dssp EEEEETTCCEEEE
T ss_pred EEEEeCCCeEEEE
Confidence 6777777777543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-30 Score=301.28 Aligned_cols=293 Identities=10% Similarity=0.053 Sum_probs=217.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++|+|+++.|++|+.||+|++||..+++. ..+..|...|.+++|||||++||+++.|++|++|+..-......
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~ 145 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG 145 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC
Confidence 46899999999999999999999999999988754 35556788999999999999999999999999986321100000
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEe-----ccCCCceeE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASS-----ELKAFMGAV 227 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-----e~~~~~v~s 227 (1196)
. ..+ ...+.+|.+.+.++.|+|++. .|+ +++ .|++|++||..+|+...++ .+|...+.+
T Consensus 146 ~-------~~~-~~~~~gh~~~v~~~~~~~~~~~~l~-s~s------~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 146 N-------MPV-SRVLTGHKGYASSCQYVPDQETRLI-TGS------GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp S-------STT-CCBCCCCSSCCCCCBCCSSSSSCEE-EEC------TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred C-------ccc-eeeccCCCcceEEEEEecCCCCEEE-EEC------CCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 0 000 112447788889999999854 577 455 4799999999999988876 567888999
Q ss_pred EEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-C-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 228 LEWMP-SGANIAAVYDRKSENKCPSIVFYERN-G-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 228 lawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-G-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
++|+| +|++|++++.|+ .|++|+.. + .... .+.. +...|.+|+|+|||+.||+++.|+ +|++|++
T Consensus 211 ~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~--~~~~-h~~~v~~v~~~p~~~~l~s~s~D~---~i~lwd~ 278 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDT------TVRLWDLRITSRAVR--TYHG-HEGDINSVKFFPDGQRFGTGSDDG---TCRLFDM 278 (380)
T ss_dssp EEECSSSCCEEEEEETTS------CEEEEETTTTCCCCE--EECC-CSSCCCEEEECTTSSEEEEECSSS---CEEEEET
T ss_pred EEeecCCCCEEEEEECCC------eEEEEECCCCCcceE--EECC-cCCCeEEEEEecCCCeEEEEcCCC---eEEEEEC
Confidence 99987 899999999874 69999953 2 2222 2333 456899999999999999999999 9999999
Q ss_pred cCCEEEEEEEEEEecC-------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecccc
Q 000992 305 SNNHWYLKYEIRYLRR-------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~-------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1196)
.+.+. .+.+..+.. ....+.|+|++.. |..++.+|.+. .|++. .+..+. .+.
T Consensus 279 ~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~g~~dg~i~----vwd~~----------~~~~~~--~~~-- 337 (380)
T 3iz6_a 279 RTGHQ--LQVYNREPDRNDNELPIVTSVAFSISGRL-LFAGYSNGDCY----VWDTL----------LAEMVL--NLG-- 337 (380)
T ss_dssp TTTEE--EEEECCCCSSSCCSSCSCSEEEECSSSSE-EEEECTTSCEE----EEETT----------TCCEEE--EEC--
T ss_pred CCCcE--EEEecccccccccccCceEEEEECCCCCE-EEEEECCCCEE----EEECC----------CCceEE--EEe--
Confidence 88753 222222111 1267899998865 66666666654 33321 111111 000
Q ss_pred CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 378 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 378 ~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...-.|.+.|.+++||||| +.||+++.||+|++|++.+
T Consensus 338 -------~~~~~h~~~v~~l~~s~dg--~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 338 -------TLQNSHEGRISCLGLSSDG--SALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -------CSCSSCCCCCCEEEECSSS--SEEEEECTTSCEEEEECCS
T ss_pred -------cccCCCCCceEEEEECCCC--CEEEEeeCCCCEEEEecCC
Confidence 0011478899999999999 8999999999999999875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-28 Score=275.86 Aligned_cols=281 Identities=11% Similarity=0.106 Sum_probs=213.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~ 152 (1196)
.+.|.+++|+|+++.|++++.||.|++|+..+++. ..+..|..+|.+++|||||++||+++.|++|++|+.. ...+..
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 102 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 36899999999999999999999999999987655 3556678999999999999999999999999998732 222221
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
+.+|...+.+++|+|||++|+ +++ .|++|+|||..+++....+..|.+.+.+++|+|
T Consensus 103 ----------------~~~~~~~v~~~~~~~~~~~l~-s~~------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 103 ----------------LKGHSNYVFCCNFNPQSNLIV-SGS------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp ----------------EECCSSCEEEEEECSSSSEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred ----------------EcCCCCCEEEEEEcCCCCEEE-EEe------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence 225667789999999999999 565 468999999989999999999999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
+|++|++++.|+ .|++|+.. +..... +...+...|..++|+|+|++|++++.|+ .|++|++.+...
T Consensus 160 ~~~~l~~~~~d~------~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~-- 226 (312)
T 4ery_A 160 DGSLIVSSSYDG------LCRIWDTASGQCLKT--LIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDYSKGKC-- 226 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEE--ECCSSCCCEEEEEECTTSSEEEEEETTT---EEEEEETTTTEE--
T ss_pred CCCEEEEEeCCC------cEEEEECCCCceeeE--EeccCCCceEEEEECCCCCEEEEEcCCC---eEEEEECCCCcE--
Confidence 999999999864 69999964 333222 2223345799999999999999999999 999999988652
Q ss_pred EEEEEEecCCc--EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-
Q 000992 312 KYEIRYLRRDG--IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL- 388 (1196)
Q Consensus 312 kq~l~~~~~~~--~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l- 388 (1196)
...+..+.... ....|++.+...|..++.+|. |++|++.... ....+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-------------------------i~vwd~~~~~-----~~~~~~ 276 (312)
T 4ery_A 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-------------------------VYIWNLQTKE-----IVQKLQ 276 (312)
T ss_dssp EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-------------------------EEEEETTTCC-----EEEEEC
T ss_pred EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-------------------------EEEEECCCch-----hhhhhh
Confidence 22222222221 233455444433444444443 4444443211 12333
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCC
Q 000992 389 KFPTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLP 423 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~ 423 (1196)
.|.+.|.+++|+|++ +.||+++ .|++|++|+.+
T Consensus 277 ~h~~~v~~~~~~p~~--~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 277 GHTDVVISTACHPTE--NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCSSCEEEEEECSSS--SEEEEEECTTTCCEEEEECC
T ss_pred ccCCcEEEEeecCcC--CceEEEEccCCccEEEecCC
Confidence 478899999999999 8999987 69999999975
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-30 Score=301.58 Aligned_cols=365 Identities=12% Similarity=0.110 Sum_probs=247.0
Q ss_pred ceeEEeeecCCC-EEEEE----------eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE
Q 000992 22 ILQFSALDIEQN-RLFFA----------SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL 90 (1196)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~----------s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L 90 (1196)
.+.+++|.+++. .++++ +.|+.|..|++ ..+.....+ .. +...+.|.+++|+|+++.|
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~--~~~~~~~~~-------~~--~~~~~~v~~~~~s~~~~~l 82 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSL--LAADSEKPI-------AS--LQVDSKFNDLDWSHNNKII 82 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEES--SSGGGCSCS-------CC--CCCSSCEEEEEECSSSSCE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEc--cCCCCCcEE-------EE--EecCCceEEEEECCCCCeE
Confidence 677889999987 78888 77889999999 443321011 11 1114689999999999999
Q ss_pred EEEECCCcEEEEECCC----C-eEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEeccCceeeeeecccccCcccc
Q 000992 91 IVGTSSGLLLLHSVDG----N-ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~----~-~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
++++.||+|++|+..+ . .+..+..|.+.|.+++|||| +++|++++.|++|++|+..-. ..... ....+
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~~~--~~~~~ 156 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKC----TESPS--NYTPL 156 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTT----SSCTT--TCCCB
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCC----ccccc--ccccc
Confidence 9999999999999987 2 45556667899999999999 999999999999988753211 10000 00000
Q ss_pred ccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC------CCceeEEEEcCCC-Ce
Q 000992 165 HEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------AFMGAVLEWMPSG-AN 236 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~------~~~v~slawsPdG-~~ 236 (1196)
....+.+|...+.+++|+|| +.+|+ +++ .+++|+|||..+++.......+ ...+.+++|+|+| ++
T Consensus 157 ~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 229 (416)
T 2pm9_A 157 TPGQSMSSVDEVISLAWNQSLAHVFA-SAG------SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTR 229 (416)
T ss_dssp CCCCSCCSSCCCCEEEECSSCTTEEE-EES------SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTE
T ss_pred ccccccCCCCCeeEEEeCCCCCcEEE-EEc------CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCE
Confidence 01122356778899999999 67888 565 4689999999899988888765 6789999999998 68
Q ss_pred EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
|++++.+.. ...|++|+......-...+...+...|.+++|+| |+++|++++.|+ +|++|++.+... ...+
T Consensus 230 l~~~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg---~v~~wd~~~~~~--~~~~ 301 (416)
T 2pm9_A 230 VATATGSDN---DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN---TVLLWNPESAEQ--LSQF 301 (416)
T ss_dssp EEEEECCSS---SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS---EEEEECSSSCCE--EEEE
T ss_pred EEEEECCCC---CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC---CEEEeeCCCCcc--ceee
Confidence 999887631 2269999965321100112212456899999999 999999999999 999999987642 3444
Q ss_pred EEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCC-----CeeEEEEcCCEEEEeeccccC--C--CCCceee
Q 000992 316 RYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVME-----NSTALVIDGSKILVTPLSLSL--M--PPPMYLF 386 (1196)
Q Consensus 316 ~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d-----~~~v~viDg~~l~lt~l~~~~--v--pppm~~~ 386 (1196)
..+......+.|+|+++..|..++.+|.+. .|++.... .......++....+++-.... . +..+...
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~----iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFACASFDNKIE----VQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQ 377 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEECCSSSEEE----EEESCCCCCSSCC----------------------CCSCCCSSCCC
T ss_pred cCCCCceEEEEECCCCCCEEEEEecCCcEE----EEEccCCCCCcccccccccccCCccccccccccccccccccccccc
Confidence 444434478999999976688877788776 45443100 000111122222222211100 0 0000000
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.. .+..+|.+++||||| ++||+++.||+|+||++.+
T Consensus 378 ~~~~~~~~~~~~~~s~dg--~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 378 APTWYGEPSPAAHWAFGG--KLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCSTTCCCSCCCEEETTT--EEECBCTTSSCBCCBCCCC
T ss_pred CCccccCCccceEEeeCC--eEEEEeCCCCeEEEEEecc
Confidence 00 156678899999999 8999999999999999875
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=294.02 Aligned_cols=386 Identities=11% Similarity=0.110 Sum_probs=266.0
Q ss_pred c-eeEEeeec--CCCEEEEEeCCCcEEEEecccccc------cccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000992 22 I-LQFSALDI--EQNRLFFASSANNIYSAQLSSFQN------ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 22 ~-~~~~~~d~--~~~~l~~~s~~~~i~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~ 92 (1196)
. +.+++|.+ ++..|++++.|+.|..|++ .++ +.. .+.+ +..+ ...|.+++|+||++.|++
T Consensus 65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~--~~~~~~~~~~~~-~~~~----~~~~----~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGW--TFDKESNSVEVN-VKSE----FQVL----AGPISDISWDFEGRRLCV 133 (615)
T ss_dssp SCEEEEEECSSTTCCEEEEEETTSEEEEEEE--EEEGGGTEEEEE-EEEE----EECC----SSCEEEEEECTTSSEEEE
T ss_pred ceEEEEEECcCCCCCEEEEecCCCEEEEEeC--CCCccccccccc-ccch----hhcc----cccEEEEEEeCCCCEEEE
Confidence 6 89999999 9999999999999999999 433 111 1111 2222 468999999999999999
Q ss_pred EECC----CcEEEEECCCCeEEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEec-cCceeeeeecccccCcccccc
Q 000992 93 GTSS----GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 93 as~d----G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
++.+ |.|.+|+. +..+.....|.+.|.+++|+|||+ +|++++.|++|.+|+. .+..+..
T Consensus 134 ~~~~~~~~~~v~~~d~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~-------------- 198 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDS-GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS-------------- 198 (615)
T ss_dssp EECCSSCSEEEEETTT-CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--------------
T ss_pred eccCCCCccEEEEEEC-CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee--------------
Confidence 9988 78999993 334555556789999999999998 8999999999999872 2222222
Q ss_pred CccccCCC---CeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEe-c---cCCCceeEEEEcCCCCeEE
Q 000992 167 PELSSSFS---FKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-E---LKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 167 tqf~~~~~---~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e---~~~~~v~slawsPdG~~IA 238 (1196)
+.+|.. .+.+++|+|| |++|+ +++ .++.|+|||..+|+..... . +|.+.+.+++|+ +|++|+
T Consensus 199 --~~~~~~~~~~v~~~~~~~~~~~~l~-~~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 199 --DRTHHKQGSFVRDVEFSPDSGEFVI-TVG------SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp --ECSSSCTTCCEEEEEECSTTCCEEE-EEE------TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred --ecccCCCCceEEEEEECCCCCCEEE-EEe------CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 224555 7899999999 99999 565 4689999998899999988 6 789999999999 999999
Q ss_pred EEecCCCCCCCCeEEEEeCC-CeeEEEEEec-------------------------------------------cC----
Q 000992 239 AVYDRKSENKCPSIVFYERN-GLERSSFDIN-------------------------------------------EQ---- 270 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~-------------------------------------------~~---- 270 (1196)
+++.+ ..|++|+.. |.....+... .+
T Consensus 269 ~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 269 TVGAD------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEETT------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEcCC------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 99986 468888854 4332222211 00
Q ss_pred ----------------------------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE-------------
Q 000992 271 ----------------------------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW------------- 309 (1196)
Q Consensus 271 ----------------------------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w------------- 309 (1196)
+...|.+++| +++..|++++.|+ +|++|+..+...
T Consensus 343 ~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~~~~~s~~~ 418 (615)
T 1pgu_A 343 TALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDD---TLKVNGITKHEFGSQPKVASANNDG 418 (615)
T ss_dssp EEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTT---EEEETTEEEEECSSCEEEEEECSSS
T ss_pred EEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCC---CEEEEEcccCcccCCceEEEEcCCC
Confidence 1122333444 3355555555555 566665543110
Q ss_pred -------------------EEEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEE----------------Eee
Q 000992 310 -------------------YLKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFI----------------WTT 353 (1196)
Q Consensus 310 -------------------ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~----------------~~~ 353 (1196)
...+.+. +......+.|+ +..|.+++. +|.+..++.. ..+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~ 494 (615)
T 1pgu_A 419 FTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 494 (615)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE
T ss_pred CEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE
Confidence 0000010 01112455555 234666666 7777654421 111
Q ss_pred e--cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec--CCCCEEEEEEec----------CCCCCEEEEEECCCcEEE
Q 000992 354 A--VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK--FPTAVTEMAFYS----------KSSKNCLAAILSDGCLCV 419 (1196)
Q Consensus 354 ~--~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~--~~~~V~~Vafsp----------dg~~~~lAs~~~dg~v~l 419 (1196)
. +++..+++...+..+++|++... .....+. |...|.+++|+| ++ ++||+++.||+|++
T Consensus 495 ~~s~~g~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~--~~l~~~~~dg~i~i 567 (615)
T 1pgu_A 495 SISPSETYIAAGDVMGKILLYDLQSR-----EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE--DLVATGSLDTNIFI 567 (615)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTT-----EEEECCSCCCSSCEEEEEECCCC------CCSC--CEEEEEETTSCEEE
T ss_pred EECCCCCEEEEcCCCCeEEEeeCCCC-----cceeEeecCCCCceeEEEEcCccccccccccCC--CEEEEEcCCCcEEE
Confidence 1 33344455556667888887532 2233443 888999999999 88 89999999999999
Q ss_pred EeCCCC-CccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 420 VDLPAP-DMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 420 w~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
|++.+. .+...+. .|...|..++|+|++. |++++.+ ..+.+|++.
T Consensus 568 w~~~~~~~~~~~~~------------~h~~~v~~l~~s~~~~-l~s~~~d--~~v~iw~~~ 613 (615)
T 1pgu_A 568 YSVKRPMKIIKALN------------AHKDGVNNLLWETPST-LVSSGAD--ACIKRWNVV 613 (615)
T ss_dssp EESSCTTCCEEETT------------SSTTCEEEEEEEETTE-EEEEETT--SCEEEEEEC
T ss_pred EECCCCceechhhh------------cCccceEEEEEcCCCC-eEEecCC--ceEEEEeee
Confidence 999864 3332333 3456899999999999 8887765 678899873
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=275.12 Aligned_cols=317 Identities=11% Similarity=0.071 Sum_probs=236.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..++++..+..++.|.. ..... .+. ..+| .+.|.+++|+|+++.|++++ ||.|++
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~--~~~~~--~~~-----~~~h----~~~v~~~~~~~~~~~l~~~~-dg~i~i 76 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGI--PRHAR--QIN-----TLNH----GEVVCAVTISNPTRHVYTGG-KGCVKV 76 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTC--CSEEE--EEE-----EECC----SSCCCEEEECSSSSEEEEEC-BSEEEE
T ss_pred ceeEEEECCCCCEEEeecCCCcEecccc--CCccc--cce-----eccC----CCceEEEEEecCCcEEEEcC-CCeEEE
Confidence 6788999999999988876665655554 12111 111 1222 46899999999999999998 999999
Q ss_pred EECCCCe----EEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGNA----TEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~~----~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
|+..++. +.... .|...|.+++|+|||+.|++++.|++|.+|+..- ...... .+..|..
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--------------~~~~~~~ 142 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA--------------ELTSSAP 142 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEE--------------EEECSSS
T ss_pred EECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceee--------------ecccCCC
Confidence 9997642 22222 4678999999999999999999999999986431 110111 1224556
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+.+++|+|||++|+ +++ .++.|++||..+++....+..|.+.+.+++|+|+|++|++++.+ ..|.+
T Consensus 143 ~i~~~~~~~~~~~l~-~~~------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~~ 209 (337)
T 1gxr_A 143 ACYALAISPDSKVCF-SCC------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD------NTVRS 209 (337)
T ss_dssp CEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred ceEEEEECCCCCEEE-EEe------CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC------CcEEE
Confidence 789999999999999 565 46899999998999999999899999999999999999999985 47999
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
|+.. +.....+. ....|..++|+|||++|++++.++ .|++|+..+..- ..+..+......+.|+|++..
T Consensus 210 ~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~---~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~ 279 (337)
T 1gxr_A 210 WDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKW 279 (337)
T ss_dssp EETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSSCE---EEECCCSSCEEEEEECTTSSE
T ss_pred EECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCCe---EEEcCCccceeEEEECCCCCE
Confidence 9954 44333322 345799999999999999999998 899999987642 122222223388999998864
Q ss_pred eEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC
Q 000992 334 QLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS 413 (1196)
Q Consensus 334 ~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~ 413 (1196)
|.+++.+|.+. +|++... .......+...|.+++|+|++ +.|++++.
T Consensus 280 -l~~~~~dg~i~-------------------------~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~ 326 (337)
T 1gxr_A 280 -FVSTGKDNLLN-------------------------AWRTPYG-----ASIFQSKESSSVLSCDISVDD--KYIVTGSG 326 (337)
T ss_dssp -EEEEETTSEEE-------------------------EEETTTC-----CEEEEEECSSCEEEEEECTTS--CEEEEEET
T ss_pred -EEEecCCCcEE-------------------------EEECCCC-----eEEEEecCCCcEEEEEECCCC--CEEEEecC
Confidence 56665555443 2222211 011234577889999999999 89999999
Q ss_pred CCcEEEEeC
Q 000992 414 DGCLCVVDL 422 (1196)
Q Consensus 414 dg~v~lw~~ 422 (1196)
||+|++|++
T Consensus 327 dg~i~iw~~ 335 (337)
T 1gxr_A 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=289.97 Aligned_cols=329 Identities=16% Similarity=0.186 Sum_probs=231.8
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEEC----CCCe-------EEEeee----------ecCcEEEEEECCCCCEEEE
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSV----DGNA-------TEVVGR----------VEGGVRFISPSPDGDLLGV 133 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~----~~~~-------~e~vg~----------~~~~I~~~awSPDg~~LA~ 133 (1196)
+.|.+++|+|+|+ .||+++.||.|++|+. .+++ ...+.+ |.+.|.+++|||||++||+
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 5799999999999 9999999999999999 7765 223333 5779999999999999999
Q ss_pred EeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc
Q 000992 134 TTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 134 ~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~ 213 (1196)
++.|++|.+|+.....+... .+|...+.+++|+|||++|+ +++ .++.|++||..+|+
T Consensus 126 ~~~dg~i~i~~~~~~~~~~~----------------~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 126 GVENGELRLWNKTGALLNVL----------------NFHRAPIVSVKWNKDGTHII-SMD------VENVTILWNVISGT 182 (425)
T ss_dssp EETTSCEEEEETTSCEEEEE----------------CCCCSCEEEEEECTTSSEEE-EEE------TTCCEEEEETTTTE
T ss_pred EeCCCeEEEEeCCCCeeeec----------------cCCCccEEEEEECCCCCEEE-EEe------cCCeEEEEECCCCc
Confidence 99999999997544433322 24556789999999999999 565 46899999999999
Q ss_pred EEEEeccCCCc---------------eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEE
Q 000992 214 LQASSELKAFM---------------GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELL 278 (1196)
Q Consensus 214 l~~~~e~~~~~---------------v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~l 278 (1196)
.......+... +.+++|+|++. +++++.+ ..|.+|+......- ..+. .+...|..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------g~i~~~d~~~~~~~-~~~~-~~~~~i~~~ 253 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK------GAIFVYQITEKTPT-GKLI-GHHGPISVL 253 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTE-EEEECGG------GCEEEEETTCSSCS-EEEC-CCSSCEEEE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC------CeEEEEEcCCCcee-eeec-cCCCceEEE
Confidence 98888766665 89999999976 5555554 46999996532211 1222 235679999
Q ss_pred EEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCC
Q 000992 279 KWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMEN 358 (1196)
Q Consensus 279 aWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~ 358 (1196)
+|+|||++|++++.|+ .|++|+..+... ...+..+......+.|+|++ .+.+++.+|.+. .|+
T Consensus 254 ~~~~~~~~l~~~~~d~---~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~----i~d------ 316 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDG---TLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVR----LWS------ 316 (425)
T ss_dssp EEETTTTEEEEEETTS---CEEEECSSSBSC--SEEECCCSSCEEEEEEETTT--EEEEEETTSEEE----EEE------
T ss_pred EECCCCCEEEEEcCCC---EEEEEECCCCcc--ceEecCCCccEEEEEECCCC--EEEEEeCCCcEE----EEE------
Confidence 9999999999999999 899999886532 12332232334889999988 466666666543 232
Q ss_pred eeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc-ccccCCce
Q 000992 359 STALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML-EDLEGTEF 436 (1196)
Q Consensus 359 ~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~-~~~~g~~~ 436 (1196)
++.. .....+ .|...|.+++|+|++ +.||+++.||+|++|++.+.... ..+.+..-
T Consensus 317 ---------------~~~~-----~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 374 (425)
T 1r5m_A 317 ---------------LKQN-----TLLALSIVDGVPIFAGRISQDG--QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRD 374 (425)
T ss_dssp ---------------TTTT-----EEEEEEECTTCCEEEEEECTTS--SEEEEEETTSCEEEEECHHHHC----------
T ss_pred ---------------CCCC-----cEeEecccCCccEEEEEEcCCC--CEEEEEECCCeEEEEECCCCccceeeeecccc
Confidence 2111 011122 367789999999999 89999999999999999653200 00000000
Q ss_pred --------eeeeecccccCC--cEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 437 --------VVEACISETAFG--SVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 437 --------~~~~~~~~~~~~--~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
.....+ ..+.. .|..++|+|++++|++++.+ ..+.+|++
T Consensus 375 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~ 423 (425)
T 1r5m_A 375 GILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSL--QEGSVVAI 423 (425)
T ss_dssp ----CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESS--SCCEEEEC
T ss_pred cccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecC--ceEEEEee
Confidence 000111 23333 89999999999999988765 57888876
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=289.80 Aligned_cols=274 Identities=12% Similarity=0.129 Sum_probs=222.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .+++.. .+ +.+| .+.|.+++|+|+|+.|++|+.||+|++
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~--~~~~~~---~~----l~~h----~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFE---RT----LKGH----TDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEET--TTCCCC---EE----ECCC----SSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcEE---EE----Eecc----CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 6889999999999999999999999999 554431 11 3444 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..++++ .....|...|.+++|+|||+.|++++.|++|++|+. ....+. .|.+|...+..+
T Consensus 177 wd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~----------------~~~~h~~~v~~~ 240 (410)
T 1vyh_C 177 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK----------------TFTGHREWVRMV 240 (410)
T ss_dssp EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE----------------EEECCSSCEEEE
T ss_pred EeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE----------------EEeCCCccEEEE
Confidence 99988654 455567899999999999999999999999999863 222222 123566788999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCC--------------------CCeEEE
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPS--------------------GANIAA 239 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd--------------------G~~IAs 239 (1196)
+|+|||.+|+ +++ .|++|+|||..++++...+.+|...+.+++|+|+ |.+|++
T Consensus 241 ~~~~~g~~l~-s~s------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 241 RPNQDGTLIA-SCS------NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EECTTSSEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EECCCCCEEE-EEc------CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 9999999999 565 4689999999899999999999999999999997 778999
Q ss_pred EecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 240 VYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
++.| ..|++|+. +|..... +.. +...|.+++|+|+|++|++++.|+ +|++|+..+... .+.+..|
T Consensus 314 gs~D------~~i~iwd~~~~~~~~~--~~~-h~~~v~~v~~~~~g~~l~s~s~D~---~i~vwd~~~~~~--~~~~~~h 379 (410)
T 1vyh_C 314 GSRD------KTIKMWDVSTGMCLMT--LVG-HDNWVRGVLFHSGGKFILSCADDK---TLRVWDYKNKRC--MKTLNAH 379 (410)
T ss_dssp EETT------SEEEEEETTTTEEEEE--EEC-CSSCEEEEEECSSSSCEEEEETTT---EEEEECCTTSCC--CEEEECC
T ss_pred EeCC------CeEEEEECCCCceEEE--EEC-CCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCce--EEEEcCC
Confidence 9986 46999995 4544432 333 456899999999999999999999 999999987642 2455555
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
......+.|+|+++. |..++.||.+.+
T Consensus 380 ~~~v~~l~~~~~~~~-l~sgs~D~~i~v 406 (410)
T 1vyh_C 380 EHFVTSLDFHKTAPY-VVTGSVDQTVKV 406 (410)
T ss_dssp SSCEEEEEECSSSSC-EEEEETTSEEEE
T ss_pred CCcEEEEEEcCCCCE-EEEEeCCCcEEE
Confidence 444589999999876 677777777654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=292.58 Aligned_cols=314 Identities=15% Similarity=0.099 Sum_probs=199.6
Q ss_pred EccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecc
Q 000992 83 YLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 83 ~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~ 156 (1196)
..+++.++ .++.+.....|++.... ...|+..|.+++|||||++||+++. |++|.+|. .....+..
T Consensus 13 ~g~~~~~~-~~~g~~~~~~w~~p~~~---p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~----~~~~~~~~ 84 (357)
T 4g56_B 13 LGTENLYF-QSNGSSKGSAWGRPVTA---PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFK----DPEGAPNE 84 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEES----SCC---CG
T ss_pred CCccceEE-ecCCCccccccCCCCCC---cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEE----CCCCCcce
Confidence 34444333 33445667889875432 2347899999999999999999998 55565553 21111111
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE----eccCCCceeEEEEcC
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----SELKAFMGAVLEWMP 232 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~----~e~~~~~v~slawsP 232 (1196)
.. .....+|...|.+++|+|||++++ .+ .+++|||||..+|+.... ..+|.+.|.+++|+|
T Consensus 85 ~~-------~~~~~~~~~~V~~~~~s~d~~~l~-~s-------~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 149 (357)
T 4g56_B 85 SL-------CTAGVQTEAGVTDVAWVSEKGILV-AS-------DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149 (357)
T ss_dssp GG-------CSEEEECSSCEEEEEEETTTEEEE-EE-------TTSCEEEC--------CCCCEEECCCSSCEEEEEECS
T ss_pred eE-------ecccCCCCCCEEEEEEcCCCCEEE-EE-------CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC
Confidence 00 011225667899999999998877 44 368999999977765432 346889999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+|++||+++.+. .|++|+.+ |.... .++. +...|.+|+|+|++. ++++++.|+ +|++|++.+....
T Consensus 150 dg~~l~sgs~dg------~v~iwd~~~~~~~~--~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~ 217 (357)
T 4g56_B 150 DGTQAVSGGKDF------SVKVWDLSQKAVLK--SYNA-HSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA 217 (357)
T ss_dssp SSSEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEE--EEcC-CCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee
Confidence 999999999864 69999965 43333 2333 356899999999986 789999999 9999998765421
Q ss_pred EEEEEEEecC-C-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 311 LKYEIRYLRR-D-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 311 lkq~l~~~~~-~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
..+.+... . ...+.|+|++...|++++.+|.+. +|+++.. .+.+++
T Consensus 218 --~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~-------------------------~wd~~~~-----~~~~~~ 265 (357)
T 4g56_B 218 --TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS-------------------------LVNIKNP-----DSAQTS 265 (357)
T ss_dssp --CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE-------------------------EEESSCG-----GGCEEE
T ss_pred --eeeeeccccccccchhhhhcccceEEEeeccccee-------------------------EEECCCC-----cEeEEE
Confidence 11222111 2 378999999877677766665543 3333221 112334
Q ss_pred -cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEec-CCeEEEEEe
Q 000992 389 -KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLG-SHLLLSVSH 466 (1196)
Q Consensus 389 -~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~-d~~lla~~~ 466 (1196)
.|...|++|+|+|++. ++||+++.|++|+||+..+...... . .|.+.|..++|+| |+.+||+++
T Consensus 266 ~~~~~~v~~l~~sp~~~-~~lasgs~D~~i~iwd~~~~~~~~~-~------------~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSS-PFLASISEDCTVAVLDADFSEVFRD-L------------SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp CCCSSCEEEEEECSSSS-CCEEEEETTSCEEEECTTSCEEEEE-C------------CCSSCEEEEEECSSSTTEEEEEE
T ss_pred eccceeEEEEEEcCCCC-CEEEEEeCCCEEEEEECCCCcEeEE-C------------CCCCCEEEEEEeCCCCCEEEEEc
Confidence 3778999999999983 5799999999999999976433311 1 3457899999998 788999988
Q ss_pred cCCCCceEEEEee
Q 000992 467 HGPRHSNYFRGAT 479 (1196)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (1196)
.+ .++.+|.+.
T Consensus 332 ~D--g~v~iW~~~ 342 (357)
T 4g56_B 332 WD--HKVLHHHLP 342 (357)
T ss_dssp TT--SCEEEEECC
T ss_pred CC--CeEEEEECC
Confidence 76 689999884
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-28 Score=277.01 Aligned_cols=275 Identities=9% Similarity=0.034 Sum_probs=217.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .++.. +.+ +..+ .+.|.+++|+|+|+.|++++.||.|++
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~--~~~~~---~~~----~~~~----~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLIIWDS--YTTNK---VHA----IPLR----SSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEET--TTCCE---EEE----EECS----SSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEEC--CCCCc---ceE----eecC----CccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 7899999999999999999999999998 44432 121 2222 357999999999999999999999999
Q ss_pred EECCCC----e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCC
Q 000992 102 HSVDGN----A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 102 w~~~~~----~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|+..++ . ......|.+.|.+++|+|++. |++++.|++|++|+. ....+.. |.+|...
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~----------------~~~h~~~ 186 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTT----------------FTGHTGD 186 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEE----------------ECCCSSC
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEE----------------EcCCCCc
Confidence 999764 2 234455789999999999976 889999999999873 2222221 2356678
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+.+++|+|||++|+ +++ .|++|+|||..+|.+..++.+|.+.+.+++|+|+|++||+++.|+ .|++|
T Consensus 187 v~~~~~~~~~~~l~-sg~------~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~------~v~iw 253 (340)
T 1got_B 187 VMSLSLAPDTRLFV-SGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA------TCRLF 253 (340)
T ss_dssp EEEEEECTTSSEEE-EEE------TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred eEEEEECCCCCEEE-EEe------CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC------cEEEE
Confidence 89999999999999 565 468999999989999999999999999999999999999999864 69999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. +.....+.. ......|.+++|||||++||+++.|+ +|++|+..+.. ....+..|......+.|+|++..
T Consensus 254 d~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~g~~d~---~i~vwd~~~~~--~~~~~~~h~~~v~~~~~s~dg~~- 326 (340)
T 1got_B 254 DLRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDF---NCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMA- 326 (340)
T ss_dssp ETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSC-
T ss_pred ECCCCcEEEEEcc-CCcccceEEEEECCCCCEEEEECCCC---eEEEEEcccCc--EeeEeecCCCcEEEEEEcCCCCE-
Confidence 954 333222211 11124699999999999999999999 99999987654 23455555444588999999875
Q ss_pred EEEEecCCcEEE
Q 000992 335 LICWTLDGQITT 346 (1196)
Q Consensus 335 L~~~~~~g~~~~ 346 (1196)
|+.++.||.+.+
T Consensus 327 l~s~s~D~~i~i 338 (340)
T 1got_B 327 VATGSWDSFLKI 338 (340)
T ss_dssp EEEEETTSCEEE
T ss_pred EEEEcCCccEEe
Confidence 777777887754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-28 Score=282.97 Aligned_cols=363 Identities=12% Similarity=0.078 Sum_probs=245.9
Q ss_pred ceeEEeeecCCC-EEEEEeCCCcEEEEec----ccccccccce---eeccccccccccCC--CCCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIEQN-RLFFASSANNIYSAQL----SSFQNERASI---KTAISAEIEHIDLE--PGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~-~l~~~s~~~~i~~~~~----~~~~~~~~~~---~~~~~~~l~~~~~~--~~~~v~~v~~spd~~~La 91 (1196)
.+.+++|.+++. .|++++.|+.|..|++ . ..+. .+. ...+...+..+... ..+.|.+++|+|+++.|+
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 124 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKK-YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV 124 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC--------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccC-Cccc-cccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence 788999999999 9999999999999998 3 1110 001 11111101110000 134899999999999999
Q ss_pred EEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccc
Q 000992 92 VGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
+++.||+|++|+..+..+..+..|...|.+++|+|||+.|++++.|++|.+|+. ....+.....+... ...+....+.
T Consensus 125 ~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~ 203 (425)
T 1r5m_A 125 TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG-GSSINAENHS 203 (425)
T ss_dssp EEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------------
T ss_pred EEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC-ccceeecccc
Confidence 999999999999766666666667899999999999999999999999999974 34443333322111 0001011111
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
+....+.+++|+|++.+++ ++ .++.|++||..+++......+|.+.+.+++|+|+|++|++++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~--~~------~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------ 269 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDDKFVI--PG------PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG------ 269 (425)
T ss_dssp --CCCBSCCEEEETTEEEE--EC------GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTS------
T ss_pred CCcceeeEEEEcCCCEEEE--Ec------CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCC------
Confidence 2223378999999987554 44 358999999989988888888999999999999999999999864
Q ss_pred eEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 251 SIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 251 ~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
.|.+|+.. +.... .+.. +...|.+++|+||| .|++++.|+ .|++|++.+... ...+..+......+.|+|
T Consensus 270 ~i~i~d~~~~~~~~--~~~~-~~~~i~~~~~~~~~-~l~~~~~d~---~i~i~d~~~~~~--~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 270 TLRIWHGGNGNSQN--CFYG-HSQSIVSASWVGDD-KVISCSMDG---SVRLWSLKQNTL--LALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp CEEEECSSSBSCSE--EECC-CSSCEEEEEEETTT-EEEEEETTS---EEEEEETTTTEE--EEEEECTTCCEEEEEECT
T ss_pred EEEEEECCCCccce--EecC-CCccEEEEEECCCC-EEEEEeCCC---cEEEEECCCCcE--eEecccCCccEEEEEEcC
Confidence 69999954 32222 2222 35679999999999 999999999 999999987652 233433333348899999
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCC--CEEEEEEecCCCCC
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPT--AVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~--~V~~Vafspdg~~~ 406 (1196)
++.. |.+++.+|.+.+ |++....... ....+..-.++ . ..+ +.....+. |.. .|.+++|+|++ +
T Consensus 341 ~~~~-l~~~~~dg~i~i----~~~~~~~~~~-~~~~~~~~~~~--~--~~~-~~~~~~~~~~~~~~~v~~~~~s~~~--~ 407 (425)
T 1r5m_A 341 DGQK-YAVAFMDGQVNV----YDLKKLNSKS-RSLYGNRDGIL--N--PLP-IPLYASYQSSQDNDYIFDLSWNCAG--N 407 (425)
T ss_dssp TSSE-EEEEETTSCEEE----EECHHHHC-------------------CEE-CCEEEEECCTTCCCCEEEEEECTTS--S
T ss_pred CCCE-EEEEECCCeEEE----EECCCCccce-eeeeccccccc--C--ccc-chhhhhhcCcccCCceEEEEccCCC--c
Confidence 9865 777777888764 4443100000 00000000000 0 001 11223443 544 89999999999 8
Q ss_pred EEEEEECCCcEEEEeCC
Q 000992 407 CLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~ 423 (1196)
.||+++.||+|++|+++
T Consensus 408 ~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 408 KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEEESSSCCEEEECC
T ss_pred eEEEEecCceEEEEeec
Confidence 99999999999999986
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-28 Score=275.88 Aligned_cols=300 Identities=12% Similarity=0.072 Sum_probs=206.8
Q ss_pred CccceecccccccccccCcccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeecccccccc-ccCCCCCCEE
Q 000992 1 MNNLKLCAEVPLNLELQSKDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEH-IDLEPGDSIT 79 (1196)
Q Consensus 1 MrNL~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~v~ 79 (1196)
|+.+.++.... .....+.+++|+++ .|++++.|+.|..|++ ..+... .+..+. .. | .+.|.
T Consensus 1 ~~~~~~~~~~~------~h~~~v~~~~~s~~--~las~~~D~~i~lw~~--~~~~~~-~~~~~~---~~~h----~~~v~ 62 (330)
T 2hes_X 1 MASINLIKSLK------LYKEKIWSFDFSQG--ILATGSTDRKIKLVSV--KYDDFT-LIDVLD---ETAH----KKAIR 62 (330)
T ss_dssp --CCEEEEEEE------CCSSCEEEEEEETT--EEEEEESSSCEEEEEC--SSSCCE-EEEEEC---TTCC----CSCEE
T ss_pred Ccccccceeec------cCCCceeeeccCCC--EEEEEcCCCEEEEEEe--cCCCeE-EEEEEe---cCCc----cCCEE
Confidence 56666654321 11227888888876 8999999999999998 433211 111110 11 2 46799
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCC-------e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGN-------A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~-------~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
+++|+|+++.|++++.||+|++|+..+. . +.....|.+.|.+++|||||++||+++.|++|++|+..-....
T Consensus 63 ~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~ 142 (330)
T 2hes_X 63 SVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142 (330)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence 9999999999999999999999998531 2 2345557899999999999999999999999999874210000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLE 229 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~sla 229 (1196)
...+. .+.+|...|.+++|+|||.+|| +++ .|++|||||..++ ++..++.+|.+.+.+++
T Consensus 143 ~~~~~-----------~~~~h~~~v~~v~~~p~~~~l~-s~s------~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~ 204 (330)
T 2hes_X 143 YECIS-----------VLQEHSQDVKHVIWHPSEALLA-SSS------YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204 (330)
T ss_dssp CEEEE-----------EECCCSSCEEEEEECSSSSEEE-EEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred eEEEE-----------EeccCCCceEEEEECCCCCEEE-EEc------CCCeEEEEECCCCCeeEEEEccCCCCcEEEEE
Confidence 00111 1335677899999999999999 565 4689999997566 67788899999999999
Q ss_pred EcCC--CCeEEEEecCCCCCCCCeEEEEeCCCee-------EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 230 WMPS--GANIAAVYDRKSENKCPSIVFYERNGLE-------RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 230 wsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl~-------~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
|+|+ |.+||+++.|. +|++|+..+.. .....++..+...|.+++|+|++ +||+++.|+ +|+
T Consensus 205 ~~~~~~~~~l~s~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg---~v~ 274 (330)
T 2hes_X 205 FDKTEGVFRLCSGSDDS------TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG---VLA 274 (330)
T ss_dssp ECCSSSSCEEEEEETTS------CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS---CEE
T ss_pred ecCCCCeeEEEEEeCCC------eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC---EEE
Confidence 9999 78999999874 69999864320 11112333356789999999776 899999999 999
Q ss_pred EEEecCCEEEEEEEE-EEecC-CcEEEEEccC-CCceEEEEecCCcEEE
Q 000992 301 ICFFSNNHWYLKYEI-RYLRR-DGIRFMWHPT-KPLQLICWTLDGQITT 346 (1196)
Q Consensus 301 lW~~~n~~wylkq~l-~~~~~-~~~~v~Wsp~-~~~~L~~~~~~g~~~~ 346 (1196)
||+..+..|...... ..+.. ....+.|+|. ++..|+.++.||.+.+
T Consensus 275 iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 275 VYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp EEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred EEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 999988776432222 12222 2378899994 2334677777776653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=286.60 Aligned_cols=329 Identities=12% Similarity=0.067 Sum_probs=233.8
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+...+|++++..|++++.++.|+.|+. .+.+.... +.. ...+....|+|+++.|++++.||+|++|
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~--~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNT--IIRDGSKM-------LKR-----ADYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEEC--CSEETTTT-------SCS-----CCEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEe--cccceeeE-------Eec-----CCceEEEEEecCCCEEEEEECCCCEEEE
Confidence 346789999999999999999999998 44332110 111 2334555789999999999999999999
Q ss_pred ECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 103 SVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|..+++.. ....|.+.|.+++|||||++||+++.|++|++|+.. ...+. .+.+|...|.+++
T Consensus 125 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----------------~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 125 DSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR----------------TLIGHRATVTDIA 188 (420)
T ss_dssp CTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE----------------EEECCSSCEEEEE
T ss_pred eCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce----------------EEcCCCCcEEEEE
Confidence 99987765 445678999999999999999999999999998732 22222 1235667899999
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC---C---------------------CceeEEEEcCCCCe
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK---A---------------------FMGAVLEWMPSGAN 236 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~---~---------------------~~v~slawsPdG~~ 236 (1196)
|+|||++|+ +++ .|++|++||..+|+...++..+ . ..+.+++|+|+|++
T Consensus 189 ~~~~~~~l~-s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 189 IIDRGRNVL-SAS------LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKY 261 (420)
T ss_dssp EETTTTEEE-EEE------TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEE
T ss_pred EcCCCCEEE-EEc------CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCE
Confidence 999999999 565 4689999999899998887642 2 33455667899999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
||+++.++ .|.+|+.. +.... .+...+...|.+++|+|+|+ +|++++.|+ +|++|++.+... ....
T Consensus 262 l~~~~~dg------~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~-~~~~ 329 (420)
T 3vl1_A 262 VIAGHVSG------VITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENG---MLAQWDLRSPEC-PVGE 329 (420)
T ss_dssp EEEEETTS------CEEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCTTS-CSEE
T ss_pred EEEEcCCC------eEEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCC---eEEEEEcCCCcC-chhh
Confidence 99999864 59999954 33222 23333456899999999999 999999999 999999986532 1134
Q ss_pred EEEecCCc-EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCC
Q 000992 315 IRYLRRDG-IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA 393 (1196)
Q Consensus 315 l~~~~~~~-~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~ 393 (1196)
+..+.... ..+ |.|++. .|..++.+|.+. .|++.... . +......+.|. ....+.+.
T Consensus 330 ~~~~~~~~v~~~-~~~~~~-~l~s~~~d~~v~----iw~~~~~~----------~----~~~~~~~~~~~--~~~~~~~~ 387 (420)
T 3vl1_A 330 FLINEGTPINNV-YFAAGA-LFVSSGFDTSIK----LDIISDPE----------S----ERPAIEFETPT--FLVSNDDA 387 (420)
T ss_dssp EEESTTSCEEEE-EEETTE-EEEEETTTEEEE----EEEECCTT----------C----CSCEECTTSCE--EECCSSCC
T ss_pred hhccCCCCceEE-EeCCCC-EEEEecCCccEE----EEeccCCC----------C----CccceeccCcc--EEccCCcc
Confidence 44434444 444 445443 355555555543 33332100 0 00000011121 12357788
Q ss_pred EEEEEEecCCCCC---EEEEEECCCcEEEEeCCC
Q 000992 394 VTEMAFYSKSSKN---CLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 394 V~~Vafspdg~~~---~lAs~~~dg~v~lw~~~~ 424 (1196)
|.+++|+|++ + .+.+++.+|.+.+|++++
T Consensus 388 v~~~~~s~~~--~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 388 VSQFCYVSDD--ESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCEEEEECCS--SSSCEEEEEETTTEEEEEESCC
T ss_pred eEEEEEccCC--CCcceEEEEcCCceEEEEeccC
Confidence 9999999999 6 677777899999999874
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-28 Score=272.01 Aligned_cols=320 Identities=9% Similarity=-0.018 Sum_probs=235.0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC-e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~ 152 (1196)
+.|.+++|+|||+.++++..++.+..|..... . +...+ |.+.|.+++|||||++|++++ |++|++|+..-. ....
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC-CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc-CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 46889999999999999998888877765442 2 23444 689999999999999999998 999999974311 1000
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEW 230 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slaw 230 (1196)
.. .....+|...+.+++|+|||++|+ +++ .+++|++||..+++ .......+.+.+.+++|
T Consensus 88 ~~-----------~~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 88 VS-----------QLDCLNRDNYIRSCKLLPDGCTLI-VGG------EASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp SE-----------EEECSCTTSBEEEEEECTTSSEEE-EEE------SSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred ee-----------cccccCCCCcEEEEEEcCCCCEEE-EEc------CCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 00 001114667889999999999999 565 46899999997777 55667778888999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+|+|++|++++.++ .|.+|+.. +.... .+.. +...|..++|+|||+.|++++.|+ .|++|++.+...
T Consensus 150 ~~~~~~l~~~~~dg------~v~~~d~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg---~i~~~d~~~~~~ 217 (337)
T 1gxr_A 150 SPDSKVCFSCCSDG------NIAVWDLHNQTLVR--QFQG-HTDGASCIDISNDGTKLWTGGLDN---TVRSWDLREGRQ 217 (337)
T ss_dssp CTTSSEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTEE
T ss_pred CCCCCEEEEEeCCC------cEEEEeCCCCceee--eeec-ccCceEEEEECCCCCEEEEEecCC---cEEEEECCCCce
Confidence 99999999999864 69999964 33322 2332 356799999999999999999999 999999987653
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK 389 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~ 389 (1196)
...+. +......+.|+|++.. +.+++.+|.+.. |+. +... ......
T Consensus 218 --~~~~~-~~~~v~~~~~s~~~~~-l~~~~~~~~i~~----~~~---------------------~~~~-----~~~~~~ 263 (337)
T 1gxr_A 218 --LQQHD-FTSQIFSLGYCPTGEW-LAVGMESSNVEV----LHV---------------------NKPD-----KYQLHL 263 (337)
T ss_dssp --EEEEE-CSSCEEEEEECTTSSE-EEEEETTSCEEE----EET---------------------TSSC-----EEEECC
T ss_pred --Eeeec-CCCceEEEEECCCCCE-EEEEcCCCcEEE----EEC---------------------CCCC-----eEEEcC
Confidence 22222 1223388999998864 666666665542 222 1110 011124
Q ss_pred CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCC
Q 000992 390 FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGP 469 (1196)
Q Consensus 390 ~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~ 469 (1196)
|...|.+++|+|++ +.|++++.||+|++|+..+...... ..+...+..++|+|++.+|++++.+
T Consensus 264 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~~~~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~d- 327 (337)
T 1gxr_A 264 HESCVLSLKFAYCG--KWFVSTGKDNLLNAWRTPYGASIFQ-------------SKESSSVLSCDISVDDKYIVTGSGD- 327 (337)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEE-------------EECSSCEEEEEECTTSCEEEEEETT-
T ss_pred CccceeEEEECCCC--CEEEEecCCCcEEEEECCCCeEEEE-------------ecCCCcEEEEEECCCCCEEEEecCC-
Confidence 77889999999999 8999999999999999976433200 0134579999999999999988765
Q ss_pred CCceEEEEe
Q 000992 470 RHSNYFRGA 478 (1196)
Q Consensus 470 ~~~~~~~~~ 478 (1196)
..+.+|++
T Consensus 328 -g~i~iw~~ 335 (337)
T 1gxr_A 328 -KKATVYEV 335 (337)
T ss_dssp -SCEEEEEE
T ss_pred -CeEEEEEE
Confidence 67888876
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=310.90 Aligned_cols=318 Identities=9% Similarity=-0.031 Sum_probs=227.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+||..+.+++.|+.|. |. ..... +.+|+ ..|..|+|+||| .++++.+
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~--~~~~~----------l~gh~----~~v~~V~FsPdg-------~~~~~~~ 71 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QP--KYAKD----------INCNS----KNLFHVKEFPLE-------FENKLDF 71 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EE--CCCSC----------CSSBG----GGTEEEEEECCC-------CCCTTTT
T ss_pred cEEEEEECCCCCEEEEEcCCceee--cc--cccce----------ecCCC----ccEEEEEECCCC-------CcceEEE
Confidence 889999999999999999999777 55 22221 34453 589999999999 6888888
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
|+.++...-..++ +..|.+++|||||++||+++.||+|++|++.. .+.... +. .++ ....+.+++|
T Consensus 72 ~~~~~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~----~~~-------~~~sv~svaf 137 (588)
T 2j04_A 72 ELAQQNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SK----GNL-------SSRTYHCFEW 137 (588)
T ss_dssp SCCCSSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CS----SCS-------TTTCEEEEEE
T ss_pred EeCCCceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CC----Ccc-------ccccEEEEEE
Confidence 8876554434454 78899999999999999999999999997533 222111 11 111 0125789999
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcE-------EEEe----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL-------QASS----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l-------~~~~----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
||||++|| +++ .|++|+|||..+|.+ ..+. .+|.++|.+++||||| ||+++.| .
T Consensus 138 SPDG~~LA-sgs------~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D------~ 202 (588)
T 2j04_A 138 NPIESSIV-VGN------EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSN------N 202 (588)
T ss_dssp CSSSSCEE-EEE------TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETT------C
T ss_pred cCCCCEEE-EEc------CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCC------C
Confidence 99999999 676 479999999977753 5665 6678899999999999 6666665 4
Q ss_pred eEEEEeCCCeeEEE--EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE-EecCCcEEEEE
Q 000992 251 SIVFYERNGLERSS--FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-YLRRDGIRFMW 327 (1196)
Q Consensus 251 ~V~~~e~nGl~~~~--f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~-~~~~~~~~v~W 327 (1196)
.|++|+.++....+ -++...+...|.+++|| |+.||+++ ++ +|+||+..+.+- ..+. .|......+.|
T Consensus 203 tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~---tIkLWd~~~~~~---~~~~~gh~~~V~~va~ 273 (588)
T 2j04_A 203 SVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG---YVHKIDLKNYSI---SSLKTGSLENFHIIPL 273 (588)
T ss_dssp CEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS---EEEEEETTTTEE---EEEECSCCSCCCEEEE
T ss_pred eEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC---eEEEEECCCCeE---EEEEcCCCceEEEEEe
Confidence 69999987655321 12432345689999999 69999997 46 899999998652 1222 22223367888
Q ss_pred --ccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCC
Q 000992 328 --HPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSK 405 (1196)
Q Consensus 328 --sp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~ 405 (1196)
+|++. .|.++..+| + ++|-+. .++|+||+
T Consensus 274 ~~s~d~~-~La~a~edG-------------------------~-klw~~d--------------------~~~~spd~-- 304 (588)
T 2j04_A 274 NHEKEST-ILLMSNKTS-------------------------Y-KVLLED--------------------ELHVTADN-- 304 (588)
T ss_dssp TTCSSCE-EEEECSSCE-------------------------E-EEEESS--------------------SEEEECCC--
T ss_pred eeCCCCC-EEEEEcCCC-------------------------C-EEEeec--------------------cEEECCCc--
Confidence 77763 244433333 2 444432 25699999
Q ss_pred CEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 406 NCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 406 ~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
..+|++ |+++++|+..+.. ...+.+ ...|+.++|+|||+++|+++.
T Consensus 305 ~l~a~~--d~~v~lW~~~g~~-l~~~~~-------------~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 305 IIAPYL--EKKFKKWSTIWNE-FNNYET-------------TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSHHHH--HHHHHHTTTTTTS-SSSSCC-------------EEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEc--CCEEEEEECCCCc-eeeecc-------------ceEEEEEEECCCCCEEEEEEe
Confidence 777775 9999999986532 212222 125899999999999998875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=280.06 Aligned_cols=292 Identities=13% Similarity=0.103 Sum_probs=215.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Eeeee------------------cCcEEEEEECCCCCEEEEEe
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRV------------------EGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~------------------~~~I~~~awSPDg~~LA~~s 135 (1196)
.+.|.+++|+|||+.||+++ ++++++|+..++... .+..+ +..|.+++|||||++||+++
T Consensus 64 ~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 46799999999999999876 789999999876543 22211 22499999999999999999
Q ss_pred CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 136 GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 136 ~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
.|++|++|+.. ...+. .+.+|...|.+++|+|||++|+ +++ .|++|+|||..+|++
T Consensus 143 ~d~~i~iwd~~~~~~~~----------------~~~~h~~~v~~~~~~p~~~~l~-s~s------~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVM----------------ILQGHEQDIYSLDYFPSGDKLV-SGS------GDRTVRIWDLRTGQC 199 (393)
T ss_dssp TTSCEEEEETTTTEEEE----------------EECCCSSCEEEEEECTTSSEEE-EEE------TTSEEEEEETTTTEE
T ss_pred CCCeEEEEECCCCcEEE----------------EEccCCCCEEEEEEcCCCCEEE-Eec------CCCcEEEEECCCCee
Confidence 99999998742 22111 1236677899999999999999 565 479999999989988
Q ss_pred EEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec----cCCCCcEEEEEEccCCCeeE
Q 000992 215 QASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN----EQIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~----~~~~~~V~~laWSpDg~~LA 288 (1196)
..+.. +...+.+++|+| +|++||+++.|+ .|++|+.. |.....+... ..+...|.+++|+|||++||
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 272 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE
Confidence 87766 455689999999 999999999864 69999954 4333222111 12456899999999999999
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK 368 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~ 368 (1196)
+++.|+ +|++|++.+... .. .. -.+. .+.
T Consensus 273 s~s~d~---~v~~wd~~~~~~-----~~-------~~-~~~~----------~~~------------------------- 301 (393)
T 1erj_A 273 SGSLDR---SVKLWNLQNANN-----KS-------DS-KTPN----------SGT------------------------- 301 (393)
T ss_dssp EEETTS---EEEEEEC--------------------------------------C-------------------------
T ss_pred EEeCCC---EEEEEECCCCCC-----cc-------cc-cCCC----------CCc-------------------------
Confidence 999999 999999876320 00 00 0000 000
Q ss_pred EEEeeccccCCCCCceeee-ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccC
Q 000992 369 ILVTPLSLSLMPPPMYLFS-LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 369 l~lt~l~~~~vpppm~~~~-l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
+..+ ..|...|.+++|+|++ +.|++++.||+|++|+..+......+.| |.
T Consensus 302 ---------------~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~iwd~~~~~~~~~l~~------------h~ 352 (393)
T 1erj_A 302 ---------------CEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQG------------HR 352 (393)
T ss_dssp ---------------EEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEEC------------CS
T ss_pred ---------------ceEEEecccCcEEEEEECCCC--CEEEEEeCCCeEEEEECCCCeEEEEECC------------CC
Confidence 0011 1367789999999999 8999999999999999986554433333 45
Q ss_pred CcEEEEEEec------CCeEEEEEecCCCCceEEEEee
Q 000992 448 GSVIHLIWLG------SHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 448 ~~v~~l~~~~------d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
+.|..++|++ ++.+||+++.+ ..+.+|++.
T Consensus 353 ~~v~~v~~~~~~~~~p~~~~l~sgs~D--g~i~iW~~~ 388 (393)
T 1erj_A 353 NSVISVAVANGSSLGPEYNVFATGSGD--CKARIWKYK 388 (393)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETT--SEEEEEEEE
T ss_pred CCEEEEEecCCcCcCCCCCEEEEECCC--CcEEECccc
Confidence 6789999886 68899998876 688999873
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=280.97 Aligned_cols=329 Identities=11% Similarity=0.051 Sum_probs=232.3
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
.+.+++|+|+|+.|++++.||+|++||..++... .... ...+....|+|||++||+++.|++|.+|+.... ...
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-ADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----LQR 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-CCEEEEEEECSSSCEEEEEETTSCEEEECTTSC----EEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-CCceEEEEEecCCCEEEEEECCCCEEEEeCCCc----cee
Confidence 4567899999999999999999999999875443 2222 245666789999999999999999999863311 111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
. .+.+|...|.+++|+|||++|+ +++ .|++|+|||..+|+...++.+|.+.+.+++|+|+|+
T Consensus 133 ~-----------~~~~h~~~v~~~~~~~~~~~l~-s~s------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 194 (420)
T 3vl1_A 133 E-----------IDQAHVSEITKLKFFPSGEALI-SSS------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR 194 (420)
T ss_dssp E-----------ETTSSSSCEEEEEECTTSSEEE-EEE------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT
T ss_pred e-----------ecccccCccEEEEECCCCCEEE-EEe------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC
Confidence 1 1225677899999999999999 565 468999999989999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCc---------------------EEEEEEccCCCeeEEEEcc
Q 000992 236 NIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDST---------------------VELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~---------------------V~~laWSpDg~~LAs~~~d 293 (1196)
+|++++.|+ .|++|+. +|.....+.....+... |.+++|||||++|++++.|
T Consensus 195 ~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 268 (420)
T 3vl1_A 195 NVLSASLDG------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS 268 (420)
T ss_dssp EEEEEETTS------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred EEEEEcCCC------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence 999999864 6999995 45444433322112233 4445568999999999999
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
+ +|++|++.+... ...+...... ...+.|+|++...|.+++.+|.+ ++|
T Consensus 269 g---~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i-------------------------~vw 318 (420)
T 3vl1_A 269 G---VITVHNVFSKEQ--TIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML-------------------------AQW 318 (420)
T ss_dssp S---CEEEEETTTCCE--EEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE-------------------------EEE
T ss_pred C---eEEEEECCCCce--eEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE-------------------------EEE
Confidence 9 899999987542 1122111122 38899999987556666655544 344
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccc---cCCceeeeeecccccCCc
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDL---EGTEFVVEACISETAFGS 449 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~ 449 (1196)
+++.... |+......+...|.++.| |++ +.|++++.||+|++|++..+.....+ ... .....+.+.
T Consensus 319 d~~~~~~--~~~~~~~~~~~~v~~~~~-~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~------~~~~~~~~~ 387 (420)
T 3vl1_A 319 DLRSPEC--PVGEFLINEGTPINNVYF-AAG--ALFVSSGFDTSIKLDIISDPESERPAIEFETP------TFLVSNDDA 387 (420)
T ss_dssp ETTCTTS--CSEEEEESTTSCEEEEEE-ETT--EEEEEETTTEEEEEEEECCTTCCSCEECTTSC------EEECCSSCC
T ss_pred EcCCCcC--chhhhhccCCCCceEEEe-CCC--CEEEEecCCccEEEEeccCCCCCccceeccCc------cEEccCCcc
Confidence 4432211 122122236677888855 566 79999999999999998763222111 110 011234568
Q ss_pred EEEEEEecCCe----EEEEEecCCCCceEEEEe
Q 000992 450 VIHLIWLGSHL----LLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 450 v~~l~~~~d~~----lla~~~~~~~~~~~~~~~ 478 (1196)
+..++|+|++. +++++.+ ..+.+|.+
T Consensus 388 v~~~~~s~~~~~~g~l~a~g~~---g~~~~~~~ 417 (420)
T 3vl1_A 388 VSQFCYVSDDESNGEVLEVGKN---NFCALYNL 417 (420)
T ss_dssp CCEEEEECCSSSSCEEEEEETT---TEEEEEES
T ss_pred eEEEEEccCCCCcceEEEEcCC---ceEEEEec
Confidence 99999999998 7777765 46667765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=272.67 Aligned_cols=285 Identities=15% Similarity=0.116 Sum_probs=209.1
Q ss_pred ceeEEee-----ec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC
Q 000992 22 ILQFSAL-----DI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~-----d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~ 95 (1196)
.+.+++| .+ ++..|++++.|+.|..|++ ..++...........+.+| .+.|.+++|+|++..|++++.
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~--~~~~~~~~~~~~~~~l~~h----~~~V~~~~~~~~~~~l~s~s~ 96 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKL--YEEEQNGYFGIPHKALTGH----NHFVSDLALSQENCFAISSSW 96 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEE--CSSCCSSBSEEEEEEECCC----SSCEEEEEECSSTTEEEEEET
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEEC--CcCCcccccccccchhccC----CCceEEEEECCCCCEEEEEcC
Confidence 6888888 55 8899999999999999998 3322100000000013444 357999999999999999999
Q ss_pred CCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 96 SGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 96 dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||+|++||..+++. .....|.+.|.+++|||||+.||+++.|++|++|+........ .. ...+|.+
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~--~~-----------~~~~~~~ 163 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS--SA-----------EKENHSD 163 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEE--CC-----------TTTSCSS
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceee--ee-----------cccCCCc
Confidence 99999999988654 4455578999999999999999999999999998754222111 11 1114567
Q ss_pred CeEEEEEccCC----------ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 175 FKSPISWRGDG----------KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 175 ~v~~isWspDG----------~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
.+.+++|+|++ .+|| +++ .|++|+|||. +++...++.+|.+.+.+++|+|+|++||+++.|
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~-s~~------~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d- 234 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFA-SVG------WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKD- 234 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEE-EEE------TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-
T ss_pred eeeeeeeccccccccccCCCCCEEE-EEc------CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCC-
Confidence 78999999998 6888 565 4699999997 888888899999999999999999999999986
Q ss_pred CCCCCCeEEEEeC-CCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE------
Q 000992 245 SENKCPSIVFYER-NGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR------ 316 (1196)
Q Consensus 245 ~~~~~~~V~~~e~-nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~------ 316 (1196)
..|++|+. +.. .... +. ....|.+++||||+++||++. |+ .|++|++.+........+.
T Consensus 235 -----g~v~iwd~~~~~~~~~~--~~--~~~~v~~v~~sp~~~~la~~~-d~---~v~iw~~~~~~~~~~~~~~~~~~~~ 301 (343)
T 2xzm_R 235 -----KKLLIWDILNLTYPQRE--FD--AGSTINQIAFNPKLQWVAVGT-DQ---GVKIFNLMTQSKAPVCTIEAEPITK 301 (343)
T ss_dssp -----CEEEEEESSCCSSCSEE--EE--CSSCEEEEEECSSSCEEEEEE-SS---CEEEEESSSCCSCSEEECCCCSGGG
T ss_pred -----CeEEEEECCCCccccee--ec--CCCcEEEEEECCCCCEEEEEC-CC---CEEEEEeCCCCCCceEEeecCcchh
Confidence 47999996 322 1121 21 234699999999999998765 44 5999998764321101121
Q ss_pred -----EecCCcEEEEEccCCCceEEEEecCCcEEEEE
Q 000992 317 -----YLRRDGIRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 317 -----~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
.+......++|+|++.. |+.++.||.+..++
T Consensus 302 ~~~~~~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 302 AEGQKGKNPQCTSLAWNALGKK-LFAGFTDGVIRTFS 337 (343)
T ss_dssp BTTBCCSCCCEEEEEECSSSCC-EEEEETTSEEEEEE
T ss_pred hhhhcCCCCceEEEEECCCCCe-EEEecCCceEEEEE
Confidence 11112378999999876 77888888776544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-27 Score=266.55 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=211.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.|++..|++++.|+.|..||. .++.. +.+ +..+ ...|.+++|+|+++.|++|+.||+|++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~--~~~~~---~~~----~~~~----~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNY--ETQVE---VRS----IQVT----ETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEEC--CCCce---eEE----eecc----CCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 7999999999999999999999999999 44432 111 2222 357999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+++. ..+..|.+.|.+++|||||++||+++.|++|++|+..-. ... ..+.+|...|.++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~---------------~~~~~h~~~v~~v 146 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE---------------QTFEGHEHFVMCV 146 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE---------------EEECCCCSCEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh---------------hhhcccCCcEEEE
Confidence 99988654 455567899999999999999999999999999873211 110 1133667789999
Q ss_pred EEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcC--CCCeEEEEecCCCCCCCCeEEEE
Q 000992 180 SWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMP--SGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 180 sWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsP--dG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+|+| |+.+|| +++ .|++|+|||..++...... .++...+..++|+| +|++||+++.| ..|++|
T Consensus 147 ~~~p~~~~~l~-sgs------~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D------~~i~iW 213 (304)
T 2ynn_A 147 AFNPKDPSTFA-SGC------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD------LTIKIW 213 (304)
T ss_dssp EECTTCTTEEE-EEE------TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETT------SEEEEE
T ss_pred EECCCCCCEEE-EEe------CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCC------CeEEEE
Confidence 9999 688999 565 4799999998776654444 34567789999987 78899999986 479999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. |.... ++.. +...|..++|+|++++||+++.|+ +|++|+..++. +.+.+..+......+.|+|++...
T Consensus 214 d~~~~~~~~--~~~~-h~~~v~~~~~~p~~~~l~s~s~Dg---~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 285 (304)
T 2ynn_A 214 DYQTKSCVA--TLEG-HMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYK--VEKTLNVGLERSWCIATHPTGRKN 285 (304)
T ss_dssp ETTTTEEEE--EEEC-CSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCC--EEEEECCSSSSEEEEEECTTCGGG
T ss_pred eCCCCccce--eeCC-CCCCEEEEEECCCCCEEEEEcCCC---eEEEEECCCCc--eeeeccCCCccEEEEEECCCCCce
Confidence 954 43333 3343 356899999999999999999999 99999998865 344554443344889999998754
Q ss_pred -EEEEecCC
Q 000992 335 -LICWTLDG 342 (1196)
Q Consensus 335 -L~~~~~~g 342 (1196)
+..+..+|
T Consensus 286 ~~asg~~~g 294 (304)
T 2ynn_A 286 YIASGFDNG 294 (304)
T ss_dssp CEEEEETTE
T ss_pred EEEEecCCc
Confidence 56655444
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=265.44 Aligned_cols=277 Identities=15% Similarity=0.084 Sum_probs=214.4
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEeccccccccc--ceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERA--SIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+.+++|.+++ +.|++++.|+.|+.|++ ...... ..+.+ +.+| ...|.+++|+|||+.|++++.||+
T Consensus 19 ~V~~l~~~~~~~~~l~s~s~D~~v~~W~~--~~~~~~~~~~~~~----~~~h----~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 19 WVTSLATSAGQPNLLLSASRDKTLISWKL--TGDDQKFGVPVRS----FKGH----SHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEE--EEETTEEEEEEEE----EECC----SSCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEEccCCCccEEEEecCCccEEEecC--CCCCccccccceE----EeCC----cccEEEEEECCCCCEEEEEeCCCE
Confidence 78999999865 78999999999999998 332211 11111 3444 358999999999999999999999
Q ss_pred EEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|++||..+++. ..+..|.+.|.+++|+|||++|++++.|++|++|+.....+.. +.+|.+.+.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~----------------~~~h~~~v~ 152 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----------------LLGHNDWVS 152 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEE----------------ECCCSSCEE
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEE----------------EeccCCcEE
Confidence 99999998765 3455578999999999999999999999999999754333221 225667789
Q ss_pred EEEEccC------CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 178 PISWRGD------GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 178 ~isWspD------G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+++|+|+ +.+|+ +++ .|++|++||..++++...+.+|.+.+.+++|+|+|++||+++.| ..
T Consensus 153 ~~~~~~~~~~~~~~~~l~-s~~------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d------g~ 219 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTII-SAG------NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD------GE 219 (319)
T ss_dssp EEEECCC------CCEEE-EEE------TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT------CE
T ss_pred EEEEccCCCCCCCccEEE-EEe------CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC------Ce
Confidence 9999995 45788 455 47899999998899999999999999999999999999999986 47
Q ss_pred EEEEeCCCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-------CC-c
Q 000992 252 IVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-------RD-G 322 (1196)
Q Consensus 252 V~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~-------~~-~ 322 (1196)
|++|+.... ... .+.. ...|.+++|||||.+||++..++ |++|+..... +...+.... .. .
T Consensus 220 i~iwd~~~~~~~~--~~~~--~~~v~~~~~sp~~~~la~~~~~~----i~v~~~~~~~--~~~~~~~~~~~~~~~~~~~v 289 (319)
T 3frx_A 220 IMLWNLAAKKAMY--TLSA--QDEVFSLAFSPNRYWLAAATATG----IKVFSLDPQY--LVDDLRPEFAGYSKAAEPHA 289 (319)
T ss_dssp EEEEETTTTEEEE--EEEC--CSCEEEEEECSSSSEEEEEETTE----EEEEEETTEE--EEEEECCCCTTCCGGGCCCE
T ss_pred EEEEECCCCcEEE--EecC--CCcEEEEEEcCCCCEEEEEcCCC----cEEEEeCcCe--eeeccCccccccccCcCcce
Confidence 999996533 222 2332 35799999999999999998775 9999998643 223332110 11 2
Q ss_pred EEEEEccCCCceEEEEecCCcEEEEE
Q 000992 323 IRFMWHPTKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 323 ~~v~Wsp~~~~~L~~~~~~g~~~~~~ 348 (1196)
..+.|+|++.. |..+..||.+.+++
T Consensus 290 ~~~~~spdg~~-l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 290 VSLAWSADGQT-LFAGYTDNVIRVWQ 314 (319)
T ss_dssp EEEEECTTSSE-EEEEETTSCEEEEE
T ss_pred eEEEECCCCCE-EEEeecCceEEEEE
Confidence 68999999875 77888888876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=272.45 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=215.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .+.+.... +.. +...|.+++|+|+|..|++++.||+|++
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~vWd~--~~~~~~~~-------~~~----~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDS--FTTNKEHA-------VTM----PCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET--TTCCEEEE-------EEC----SSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEEEEC--CCCCcceE-------Eec----CCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 7899999999999999999999999998 44432111 111 2457999999999999999999999999
Q ss_pred EECCCC-------eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCC
Q 000992 102 HSVDGN-------ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 102 w~~~~~-------~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|+.... ....+..|.+.|.+++|+||++.|++++.|++|++|+. ....+.. |.+|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~----------------~~~h~ 196 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS----------------FHGHG 196 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE----------------EECCS
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE----------------EcCCC
Confidence 998532 23344557899999999999999999999999999873 2332222 23566
Q ss_pred CCeEEEEEcc--CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 174 SFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 174 ~~v~~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
..+.+++|+| +|++|+ +++ .|++|++||..+|++..++++|.+.+.+++|+|+|++||+++.|. .
T Consensus 197 ~~v~~~~~~~~~~g~~l~-sgs------~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~ 263 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFV-SGG------CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDA------T 263 (354)
T ss_dssp SCEEEEEECCCSSCCEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------C
T ss_pred CCeEEEEEEeCCCCCEEE-EEe------CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCC------e
Confidence 7788999977 688999 565 468999999989999999999999999999999999999999874 6
Q ss_pred EEEEeCCCe-eEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 252 IVFYERNGL-ERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 252 V~~~e~nGl-~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
|++|+.... .... +.. .....+.+++|||||++||+++.|+ +|++|++.+..- ...+..|......+.|+|
T Consensus 264 v~lwd~~~~~~~~~--~~~~~~~~~~~~~~~s~~g~~l~~g~~d~---~i~vwd~~~~~~--~~~l~~h~~~v~~l~~sp 336 (354)
T 2pbi_B 264 CRLYDLRADREVAI--YSKESIIFGASSVDFSLSGRLLFAGYNDY---TINVWDVLKGSR--VSILFGHENRVSTLRVSP 336 (354)
T ss_dssp EEEEETTTTEEEEE--ECCTTCCSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCSE--EEEECCCSSCEEEEEECT
T ss_pred EEEEECCCCcEEEE--EcCCCcccceeEEEEeCCCCEEEEEECCC---cEEEEECCCCce--EEEEECCCCcEEEEEECC
Confidence 999996432 2221 221 1224689999999999999999999 999999876542 234444444448899999
Q ss_pred CCCceEEEEecCCcEEE
Q 000992 330 TKPLQLICWTLDGQITT 346 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~ 346 (1196)
++.. |+.++.||.+.+
T Consensus 337 dg~~-l~sgs~D~~v~v 352 (354)
T 2pbi_B 337 DGTA-FCSGSWDHTLRV 352 (354)
T ss_dssp TSSC-EEEEETTSEEEE
T ss_pred CCCE-EEEEcCCCCEEe
Confidence 9876 778887887653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=300.05 Aligned_cols=302 Identities=9% Similarity=-0.047 Sum_probs=200.6
Q ss_pred EEEEECCCcEEEEECCCCeE-----EEeeeecCcEEEEEECCC------CCEEEEEeCCceEEEEeccCce-eeeeeccc
Q 000992 90 LIVGTSSGLLLLHSVDGNAT-----EVVGRVEGGVRFISPSPD------GDLLGVTTGFGQILVMTHDWDL-LYENPLEE 157 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~~~-----e~vg~~~~~I~~~awSPD------g~~LA~~s~d~tV~l~~~~~d~-~~~~~l~~ 157 (1196)
|++++.||+|+||+.+++++ ..+.+|.+.|++++|||+ |.+||+++.||+|++|+..-.. ........
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 34456789999999987643 234556788999999997 6899999999999998743111 00000000
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEE--EEcCCC
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVL--EWMPSG 234 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~sl--awsPdG 234 (1196)
. .+ ...+.+|...+.+++|+|++ +|| +++ .|++|++||..++. ...++.+|.+.|.+| +|+|+|
T Consensus 256 ~---~p--~~~l~~h~~~v~sv~~s~~~-~la-sgs------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 256 E---KP--SLTLSLADSLITTFDFLSPT-TVV-CGF------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp C---SC--SEEECCTTTCEEEEEESSSS-EEE-EEE------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred c---Cc--eEEEEcCCCCEEEEEecCCC-eEE-EEe------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence 0 00 01244677889999999976 688 565 47999999997674 445678899999999 689999
Q ss_pred -CeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 235 -ANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 235 -~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
++|||++.|+ +|++|+. ++.....+.-+. ....|.+|+|||||+.||+++.|+ +|+||++.+... .
T Consensus 323 ~~~laS~S~D~------tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~---tv~lwd~~~~~~--~ 390 (524)
T 2j04_B 323 DTVVSTVAVDG------YFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGAS---SLRAVPSRAAFA--V 390 (524)
T ss_dssp CCEEEEEETTS------EEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSS---EEEEEETTCTTC--C
T ss_pred CeEEEEeccCC------eEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCC---cEEEEECccccc--c
Confidence 9999999974 7999995 332211121111 113488999999999999999998 999999887532 2
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEE-------------------EEEeeecCCCeeEEEEcCCEEEEee
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYN-------------------FIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~-------------------~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
..+..|...+..++|||+++. |..++.||.+.+++ ++|.++++. ||+.+.++.
T Consensus 391 ~~l~gH~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp-------~g~~~~~~~ 462 (524)
T 2j04_B 391 HPLVSRETTITAIGVSRLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSI-------KDDKYRIDS 462 (524)
T ss_dssp EEEEECSSCEEEEECCSSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCS-------SSCEEEECC
T ss_pred eeeecCCCceEEEEeCCCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCC-------CCCeEEccC
Confidence 345555445589999999875 77788888876421 234443322 344444433
Q ss_pred -ccccCC-CCCceeeee-cCCCCEEEEEEecCCC-CCEEEEEECCCcEEEEeCCC
Q 000992 374 -LSLSLM-PPPMYLFSL-KFPTAVTEMAFYSKSS-KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 374 -l~~~~v-pppm~~~~l-~~~~~V~~Vafspdg~-~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+..+.. ..+.+..++ +|..+|++|+|||++. +..+|+++.||+|+||++..
T Consensus 463 ~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 463 SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 111110 112233444 4889999999999962 25999999999999999874
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-29 Score=297.92 Aligned_cols=295 Identities=10% Similarity=0.060 Sum_probs=208.3
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeE---EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNAT---EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~---e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
...|++|+|+| ++..||+|+.||+|+|||..++.. .....|.+.|++++||| ||++|++++.|++|++|+.....
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 35799999999 567999999999999999986532 12224689999999999 79999999999999999754333
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
....... . .+...+.+++|+|||++|| +++ .+++|++||. +|+...++.+|.+.|.+++
T Consensus 199 ~~~~~~~--~-----------~~~~~~~~~~~~~~~~~l~-~g~------~dg~i~~wd~-~~~~~~~~~~h~~~v~~v~ 257 (435)
T 4e54_B 199 LRVFASS--D-----------TINIWFCSLDVSASSRMVV-TGD------NVGNVILLNM-DGKELWNLRMHKKKVTHVA 257 (435)
T ss_dssp EEEEECC--S-----------SCSCCCCCEEEETTTTEEE-EEC------SSSBEEEEES-SSCBCCCSBCCSSCEEEEE
T ss_pred eeEEecc--C-----------CCCccEEEEEECCCCCEEE-EEe------CCCcEeeecc-CcceeEEEecccceEEeee
Confidence 2211111 0 1223567899999999999 675 4689999999 7888888889999999999
Q ss_pred EcCCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 230 WMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 230 wsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
|+|+|+ +||+++.| ..|++|+.. +.....+.....+...|.+|+|||||++||+++.|+ +|+||++.++
T Consensus 258 ~~p~~~~~~~s~s~d------~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~---~i~iwd~~~~ 328 (435)
T 4e54_B 258 LNPCCDWFLATASVD------QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---EIRVYSASQW 328 (435)
T ss_dssp ECTTCSSEEEEEETT------SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS---CEEEEESSSS
T ss_pred ecCCCceEEEEecCc------ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC---EEEEEECCCC
Confidence 999987 78888886 469999953 222222211123456899999999999999999999 9999999875
Q ss_pred EEEEEEEEEEecC------CcEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCC
Q 000992 308 HWYLKYEIRYLRR------DGIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMP 380 (1196)
Q Consensus 308 ~wylkq~l~~~~~------~~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vp 380 (1196)
.. ...+..+.. ......|+|++.. +.+.. .++.+. .+...+++.|++|+.....
T Consensus 329 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~--------------~~~~~~~~~i~iwd~~~g~-- 389 (435)
T 4e54_B 329 DC--PLGLIPHPHRHFQHLTPIKAAWHPRYNL-IVVGRYPDPNFK--------------SCTPYELRTIDVFDGNSGK-- 389 (435)
T ss_dssp SS--EEEECCCCCCCCSSSCCCBCEECSSSSC-EEEECCCCTTSC--------------CSSTTCCCCEEEECSSSCC--
T ss_pred cc--ceEEecccccccccceeEEEEEcCCCCE-EEEEEcCCCCeE--------------EEEecCCCEEEEEECCCCc--
Confidence 42 122222211 1145678988765 33332 222211 1111244566676654321
Q ss_pred CCceeeee--cCCCCEEEE-EEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 381 PPMYLFSL--KFPTAVTEM-AFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 381 ppm~~~~l--~~~~~V~~V-afspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...++ .|...|.++ +|||+| ++||++ .|++|+||++.+
T Consensus 390 ---~~~~l~~~~~~~v~s~~~fspdg--~~lasg-~d~~i~iW~~~~ 430 (435)
T 4e54_B 390 ---MMCQLYDPESSGISSLNEFNPMG--DTLASA-MGYHILIWSQQE 430 (435)
T ss_dssp ---EEEEECCSSCCCCCCEEEECTTS--SCEEEE-CSSEEEECCCC-
T ss_pred ---EEEEEeCCCCCcEEEEEEECCCC--CEEEEE-cCCcEEEEECCc
Confidence 11222 367778887 799999 899987 488999999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=277.28 Aligned_cols=291 Identities=12% Similarity=0.037 Sum_probs=200.8
Q ss_pred CEEEEEEccCCCEEEEEECCC-------cEEEEECCCCe------EE-----EeeeecCcEEEEEECCCCCEEEEEe---
Q 000992 77 SITAFDYLMEKEALIVGTSSG-------LLLLHSVDGNA------TE-----VVGRVEGGVRFISPSPDGDLLGVTT--- 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG-------~I~lw~~~~~~------~e-----~vg~~~~~I~~~awSPDg~~LA~~s--- 135 (1196)
.|.+++|+|||+.||+|+.+. .|++|+.+.+. +. .+..+++.|.+++| |+..++++.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~ 93 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNEN 93 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCC
Confidence 699999999999999997644 49999986531 11 12234566777655 556777664
Q ss_pred --------CCceEEEEeccCceeeeeecccccCcccccc---CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 136 --------GFGQILVMTHDWDLLYENPLEELAEGFDVHE---PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 136 --------~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~---tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
.|+++++|...-..- +.+.+.. .....+++.+..++|||||+++| +++. ..|++|
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la-~as~----~~d~~i 159 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVND---------QLEFLTSVDFDASTNADDYTKLVYISREGTVAA-IASS----KVPAIM 159 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTT---------EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEE-EEES----CSSCEE
T ss_pred ccEEEEecCCCcEEEEEecCCCc---------eEEEeeeeceeecCCcccCEEEEEEcCCCCEEE-EEEC----CCCCEE
Confidence 355676664211000 0001110 11224556688999999999998 5542 257999
Q ss_pred EEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCC
Q 000992 205 KVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMS 284 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg 284 (1196)
||||..++++....+ +.+.|.+++|||||++||+++.+ ..+++|..+|........ ..+...|.+++|+|||
T Consensus 160 ~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~------~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 160 RIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS------SLEVISTVTGSCIARKTD-FDKNWSLSKINFIADD 231 (365)
T ss_dssp EEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS------CEEEEETTTCCEEEEECC-CCTTEEEEEEEEEETT
T ss_pred EEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce------eEEEEEeccCcceeeeec-CCCCCCEEEEEEcCCC
Confidence 999999999988876 66789999999999999999864 345556666654332222 2235679999999999
Q ss_pred CeeEEEEccCCc-ceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeE
Q 000992 285 DLLAAVVRFEEY-DSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTA 361 (1196)
Q Consensus 285 ~~LAs~~~d~~~-~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v 361 (1196)
+.|++++.++.. .++++|+.....+...+...+.. ....++.|+|++.. |++++.||.+. +|++.
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~----iwd~~------- 299 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIA----LVKLK------- 299 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEE----EEETT-------
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEE----EEECC-------
Confidence 999999988643 26899998877654433333332 23488999999865 77777666554 23321
Q ss_pred EEEcCCEEEEeeccccCCCCCceeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 362 LVIDGSKILVTPLSLSLMPPPMYLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 362 ~viDg~~l~lt~l~~~~vpppm~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
+|+. .+++ .|..+|++|+||||| ++||+++.|++|+||+++.
T Consensus 300 ---~~~~----------------~~~~~~gH~~~V~~v~fSpdg--~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 300 ---DLSM----------------SKIFKQAHSFAITEVTISPDS--TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp ---TTEE----------------EEEETTSSSSCEEEEEECTTS--CEEEEEETTSEEEEEECCT
T ss_pred ---CCcE----------------EEEecCcccCCEEEEEECCCC--CEEEEEeCCCeEEEEEcCC
Confidence 1111 1222 388999999999999 9999999999999999964
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=277.49 Aligned_cols=289 Identities=13% Similarity=0.087 Sum_probs=214.6
Q ss_pred CCCEEEEEEccCC-CEEEEEECCCcEEEEECCCCeEE-Eee--eecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCce
Q 000992 75 GDSITAFDYLMEK-EALIVGTSSGLLLLHSVDGNATE-VVG--RVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 75 ~~~v~~v~~spd~-~~La~as~dG~I~lw~~~~~~~e-~vg--~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
.+.|.+++|+|++ +.|++++.||+|++||..++... ... .|.+.|.+++||| |+++|++++.|++|.+|+.....
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 152 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV 152 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 4689999999999 99999999999999999876543 222 3689999999999 78999999999999999755333
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLE 229 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sla 229 (1196)
+.....+ .++...+.+++|+|||++|+ +++ .+++|++||. +|+...++..|.+.+.+++
T Consensus 153 ~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~ 211 (383)
T 3ei3_B 153 IQVFAKT-------------DSWDYWYCCVDVSVSRQMLA-TGD------STGRLLLLGL-DGHEIFKEKLHKAKVTHAE 211 (383)
T ss_dssp EEEEECC-------------CCSSCCEEEEEEETTTTEEE-EEE------TTSEEEEEET-TSCEEEEEECSSSCEEEEE
T ss_pred eEEEecc-------------CCCCCCeEEEEECCCCCEEE-EEC------CCCCEEEEEC-CCCEEEEeccCCCcEEEEE
Confidence 2222111 13446789999999999999 565 4689999999 8999999999999999999
Q ss_pred EcCCCC-eEEEEecCCCCCCCCeEEEEeCC-----CeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCCcceEEEE
Q 000992 230 WMPSGA-NIAAVYDRKSENKCPSIVFYERN-----GLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 230 wsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-----Gl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~~~~V~lW 302 (1196)
|+|+|+ +||+++.| ..|++|+.. +..... + .+...|.+++|+| ||++||+++.|+ +|++|
T Consensus 212 ~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~--~--~~~~~v~~~~~s~~~~~~l~~~~~d~---~i~iw 278 (383)
T 3ei3_B 212 FNPRCDWLMATSSVD------ATVKLWDLRNIKDKNSYIAE--M--PHEKPVNAAYFNPTDSTKLLTTDQRN---EIRVY 278 (383)
T ss_dssp ECSSCTTEEEEEETT------SEEEEEEGGGCCSTTCEEEE--E--ECSSCEEEEEECTTTSCEEEEEESSS---EEEEE
T ss_pred ECCCCCCEEEEEeCC------CEEEEEeCCCCCcccceEEE--e--cCCCceEEEEEcCCCCCEEEEEcCCC---cEEEE
Confidence 999999 99999986 479999964 222221 2 2456899999999 999999999999 99999
Q ss_pred EecCCEEEEEEEEEEec------CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccc
Q 000992 303 FFSNNHWYLKYEIRYLR------RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSL 376 (1196)
Q Consensus 303 ~~~n~~wylkq~l~~~~------~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~ 376 (1196)
++.+... .+.+..+. .......|+|++.......+.+|.+ +..+++.|++|++..
T Consensus 279 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-----------------s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 279 SSYDWSK--PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-----------------LLNDKRTIDIYDANS 339 (383)
T ss_dssp ETTBTTS--CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-----------------CTTCCCCEEEEETTT
T ss_pred ECCCCcc--ccccccccccccccccceEEeccCCCCceEEEecCCccc-----------------ccCCCCeEEEEecCC
Confidence 9886542 22333322 1123457888776533333333321 111334566776643
Q ss_pred cCCCCCceeeeec---CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 377 SLMPPPMYLFSLK---FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 377 ~~vpppm~~~~l~---~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.. ...++. +...+..++|+|++ +.||+++ ||+|++|++++
T Consensus 340 ~~-----~~~~l~~~~~~~~~~~~~~s~~g--~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 340 GG-----LVHQLRDPNAAGIISLNKFSPTG--DVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CC-----EEEEECBTTBCSCCCEEEECTTS--SEEEEEE-TTEEEEEECC-
T ss_pred Cc-----eeeeecCCCCCceEEEEEEecCc--cEEEEec-CCcEEEEecCC
Confidence 21 223343 45667788999999 8999996 99999999874
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-26 Score=258.67 Aligned_cols=293 Identities=11% Similarity=0.091 Sum_probs=208.0
Q ss_pred cccccCCCCCCEEEEEEccC-CCEEEEEECCCcEEEEECCCCe------EEEeeeecCcEEEEEECCCCCEEEEEeCCce
Q 000992 67 IEHIDLEPGDSITAFDYLME-KEALIVGTSSGLLLLHSVDGNA------TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~~~------~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t 139 (1196)
|++| .+.|++|+|+|+ ++.||+|+.||+|++||+.+.+ ...+..|.+.|.+++|||||++|++++.|+.
T Consensus 34 L~GH----~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 34 LKGH----NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp ECCC----SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ECCc----cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 6677 468999999998 6899999999999999987532 2344557899999999999999999999999
Q ss_pred EEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-EEe
Q 000992 140 ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-ASS 218 (1196)
Q Consensus 140 V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-~~~ 218 (1196)
|++|............ .+...+....|++++.+|+ +++ .|+.+++||...+... ...
T Consensus 110 i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~-s~s------~d~~~~~~d~~~~~~~~~~~ 167 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFV---------------GHTKDVLSVAFSSDNRQIV-SGS------RDKTIKLWNTLGVCKYTVQD 167 (340)
T ss_dssp EEEEETTTTEEEEEEE---------------CCSSCEEEEEECTTSSCEE-EEE------TTSCEEEECTTSCEEEEECS
T ss_pred ceEEeecccceeeeec---------------CCCCceeEEEEeecCccce-eec------CCCeEEEEEeCCCceEEEEe
Confidence 9998744322211111 2234668899999999999 565 4689999998443332 234
Q ss_pred ccCCCceeEEEEcCCC--CeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000992 219 ELKAFMGAVLEWMPSG--ANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 219 e~~~~~v~slawsPdG--~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
.+|...+..++|+|++ .++++++.|. .|++|+... .... .+.. +...|.+|+|+|||++||+++.|+
T Consensus 168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~------~i~i~d~~~~~~~~--~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg- 237 (340)
T 4aow_A 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDK------LVKVWNLANCKLKT--NHIG-HTGYLNTVTVSPDGSLCASGGKDG- 237 (340)
T ss_dssp SSCSSCEEEEEECSCSSSCEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEECTTSSEEEEEETTC-
T ss_pred ccccCcccceEEccCCCCcEEEEEcCCC------EEEEEECCCCceee--EecC-CCCcEEEEEECCCCCEEEEEeCCC-
Confidence 6688889999999986 4678888764 699999643 3222 2333 456899999999999999999999
Q ss_pred cceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecc
Q 000992 296 YDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 296 ~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1196)
+|++|++.+... ...+.. ......+.|+|++. +.+...+|.+. .|+.. +.. .+..+.
T Consensus 238 --~i~iwd~~~~~~--~~~~~~-~~~v~~~~~~~~~~--~~~~~~d~~i~----iwd~~-----------~~~-~~~~~~ 294 (340)
T 4aow_A 238 --QAMLWDLNEGKH--LYTLDG-GDIINALCFSPNRY--WLCAATGPSIK----IWDLE-----------GKI-IVDELK 294 (340)
T ss_dssp --EEEEEETTTTEE--EEEEEC-SSCEEEEEECSSSS--EEEEEETTEEE----EEETT-----------TTE-EEEEEC
T ss_pred --eEEEEEeccCce--eeeecC-CceEEeeecCCCCc--eeeccCCCEEE----EEECC-----------CCe-EEEecc
Confidence 999999987642 122221 12237788998764 34444456554 33321 111 111111
Q ss_pred ccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 376 LSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 376 ~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
. ++.......|+..|++|+|+||| +.||+++.||+|++|++.+
T Consensus 295 ~----~~~~~~~~~h~~~v~~l~~s~dg--~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 295 Q----EVISTSSKAEPPQCTSLAWSADG--QTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp C----C-------CCCCCEEEEEECTTS--SEEEEEETTSCEEEEEEEC
T ss_pred c----cceeeeccCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEeCCC
Confidence 1 11111122478899999999999 8999999999999999875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=286.52 Aligned_cols=341 Identities=12% Similarity=0.099 Sum_probs=232.9
Q ss_pred CEEEEEEccCCC-EEEEE----------ECCCcEEEEECCCCe----EEEeeeecCcEEEEEECCCCCEEEEEeCCceEE
Q 000992 77 SITAFDYLMEKE-ALIVG----------TSSGLLLLHSVDGNA----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 77 ~v~~v~~spd~~-~La~a----------s~dG~I~lw~~~~~~----~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
.|.+++|+|||+ .|+++ +.||+|++||..++. +...+ |...|.+++|||||++||+++.|++|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEEEEccCCeEE
Confidence 578899999997 89999 899999999998753 22344 578999999999999999999999999
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCc------E
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGT------L 214 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~------l 214 (1196)
+|+..-........ ..+.+|...|.+++|+|| +++|+ +++ .+++|+|||..+++ .
T Consensus 93 vw~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~~~~~~~~l~-s~~------~dg~v~iwd~~~~~~~~~~~~ 154 (416)
T 2pm9_A 93 LYSTNEANNAINSM-----------ARFSNHSSSVKTVKFNAKQDNVLA-SGG------NNGEIFIWDMNKCTESPSNYT 154 (416)
T ss_dssp EECCSSTTSCCCEE-----------EECCCSSSCCCEEEECSSSTTBEE-EEC------SSSCEEBCBTTTTSSCTTTCC
T ss_pred Eeecccccccccch-----------hhccCCccceEEEEEcCCCCCEEE-EEc------CCCeEEEEECCCCcccccccc
Confidence 98643200000011 123356778899999999 88998 565 46899999997776 2
Q ss_pred EE---EeccCCCceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCC-----CCcEEEEEEccCC
Q 000992 215 QA---SSELKAFMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQI-----DSTVELLKWNCMS 284 (1196)
Q Consensus 215 ~~---~~e~~~~~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~-----~~~V~~laWSpDg 284 (1196)
.. ....|.+.+.+++|+|+ +++|++++.++ .|++|+.. +..... +..+. ...|.+++|+|+|
T Consensus 155 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 155 PLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLKAKKEVIH--LSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp CBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETTTTEEEEE--ECCCCCSSCCCCCEEEEEECSSC
T ss_pred ccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECCCCCcceE--EeccccccccCCceEEEEECCCC
Confidence 22 23567888999999999 78999998864 69999964 333332 33221 4679999999998
Q ss_pred -CeeEEEEccCCcceEEEEEecCCEEEEEEEEE-EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 285 -DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR-YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 285 -~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~-~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
.+|++++.|+...+|++|++.+... ....+. .+......+.|+|.++..|.+++.+|.+. .|+
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~----~wd---------- 291 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL----LWN---------- 291 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEE----EEC----------
T ss_pred CCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEE----Eee----------
Confidence 6899998885333699999886421 112222 23233488999994444466666666543 232
Q ss_pred EEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccC-------C
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEG-------T 434 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g-------~ 434 (1196)
++.. ....++ .|...|.+++|+|++. +.|++++.||+|++|++.+......... .
T Consensus 292 -----------~~~~-----~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 354 (416)
T 2pm9_A 292 -----------PESA-----EQLSQFPARGNWCFKTKFAPEAP-DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQES 354 (416)
T ss_dssp -----------SSSC-----CEEEEEECSSSCCCCEEECTTCT-TEEEECCSSSEEEEEESCCCCCSSCC----------
T ss_pred -----------CCCC-----ccceeecCCCCceEEEEECCCCC-CEEEEEecCCcEEEEEccCCCCCcccccccccccCC
Confidence 2211 111223 3678899999999973 6899999999999999976433211110 0
Q ss_pred ceeeee----------------ecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 435 EFVVEA----------------CISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 435 ~~~~~~----------------~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
...... ..+..+...+..++|+|+|++||+++.+ ..+.+|.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d--~~v~~w~~ 412 (416)
T 2pm9_A 355 ETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG--KGVSITNP 412 (416)
T ss_dssp ------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS--SCBCCBCC
T ss_pred cccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC--CeEEEEEe
Confidence 000000 0001123456688999999999988754 56777766
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=290.78 Aligned_cols=246 Identities=13% Similarity=0.104 Sum_probs=191.9
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++|.+++ +.|+++|.|+.|..|++ .......... ...+.+| .+.|.+++|+|||+.|++++.||+|+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~--~~~~~~~~~~--~~~~~~h----~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKL--TKDDKAYGVA--QRRLTGH----SHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEEC--CCSTTCSCEE--EEEEECC----SSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEc--cCCCcccccc--cceecCC----CCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 78899999875 78999999999999998 3322111100 0114445 35899999999999999999999999
Q ss_pred EEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 101 LHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
+||..++.. .....|.+.|.+++|||||+.|++++.|++|++|+.......... ....+|.+.+.++
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~------------~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS------------EGGEGHRDWVSCV 523 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC------------SSTTSCSSCEEEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec------------cCCCCCCCcEEEE
Confidence 999988764 345557899999999999999999999999999874322211111 0112567789999
Q ss_pred EEccCC--ceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 180 SWRGDG--KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 180 sWspDG--~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+|+|++ .+|+ +++ .|++|+|||..++++..++.+|.+.+.+++|+|+|++||+++.|+ .|++|+.
T Consensus 524 ~~~~~~~~~~l~-s~s------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~ 590 (694)
T 3dm0_A 524 RFSPNTLQPTIV-SAS------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG------VVLLWDL 590 (694)
T ss_dssp EECSCSSSCEEE-EEE------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------BCEEEET
T ss_pred EEeCCCCcceEE-EEe------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEEC
Confidence 999998 4677 455 478999999989999999999999999999999999999999864 6999995
Q ss_pred -CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 258 -NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 258 -nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|.... .+. ....|.+++||||+.+|+++..+ .|++|++.+..
T Consensus 591 ~~~~~~~--~~~--~~~~v~~~~~sp~~~~l~~~~~~----~i~iwd~~~~~ 634 (694)
T 3dm0_A 591 AEGKKLY--SLE--ANSVIHALCFSPNRYWLCAATEH----GIKIWDLESKS 634 (694)
T ss_dssp TTTEEEE--CCB--CSSCEEEEEECSSSSEEEEEETT----EEEEEETTTTE
T ss_pred CCCceEE--Eec--CCCcEEEEEEcCCCcEEEEEcCC----CEEEEECCCCC
Confidence 443322 222 34579999999999999988765 49999998753
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=264.71 Aligned_cols=313 Identities=10% Similarity=0.005 Sum_probs=214.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Ccee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLL 150 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~ 150 (1196)
.+.|.+++|+||++.|++++.||+|++||..+++ +..+..|.+.|.+++|+|||++||+++.|++|++|+.. .+..
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 87 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 87 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence 3579999999999999999999999999999874 44555678999999999999999999999999998632 1111
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc----EEEEeccCCCcee
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT----LQASSELKAFMGA 226 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~----l~~~~e~~~~~v~ 226 (1196)
.... +..|...+.+++|+|||++|+ +++ .++.|++||..++. ......+|.+.+.
T Consensus 88 ~~~~--------------~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~ 146 (372)
T 1k8k_C 88 PTLV--------------ILRINRAARCVRWAPNEKKFA-VGS------GSRVISICYFEQENDWWVCKHIKKPIRSTVL 146 (372)
T ss_dssp EEEE--------------CCCCSSCEEEEEECTTSSEEE-EEE------TTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred eeEE--------------eecCCCceeEEEECCCCCEEE-EEe------CCCEEEEEEecCCCcceeeeeeecccCCCee
Confidence 1111 114556789999999999999 565 46899999997666 2333467888999
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-------------------CeeEEEEEeccCCCCcEEEEEEccCCCee
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN-------------------GLERSSFDINEQIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-------------------Gl~~~~f~l~~~~~~~V~~laWSpDg~~L 287 (1196)
+++|+|+|++|++++.++ .|++|+.. |.... .+. .+...|.+++|+|||++|
T Consensus 147 ~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l 217 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESS-SSCGWVHGVCFSANGSRV 217 (372)
T ss_dssp EEEECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECC-CCSSCEEEEEECSSSSEE
T ss_pred EEEEcCCCCEEEEEcCCC------CEEEEEcccccccccccccccccccchhhheE--ecC-CCCCeEEEEEECCCCCEE
Confidence 999999999999999864 69999942 32222 222 235679999999999999
Q ss_pred EEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEE-----eee--cCCCee
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIW-----TTA--VMENST 360 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~-----~~~--~~d~~~ 360 (1196)
++++.|+ +|++|++.+... ...+..+......+.|+|++.. +..+ .+|.+.+++..- ... .+....
T Consensus 218 ~~~~~d~---~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~ 290 (372)
T 1k8k_C 218 AWVSHDS---TVCLADADKKMA--VATLASETLPLLAVTFITESSL-VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ 290 (372)
T ss_dssp EEEETTT---EEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEE-EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred EEEeCCC---EEEEEECCCCce--eEEEccCCCCeEEEEEecCCCE-EEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence 9999999 999999987642 3344443333488999998863 4554 678776544321 000 000000
Q ss_pred EEEEcCCEEEEe---eccccCC--CCCceeeeecCCCCEEEEEEecCC-C-CCEEEEEECCCcEEEEeCCC
Q 000992 361 ALVIDGSKILVT---PLSLSLM--PPPMYLFSLKFPTAVTEMAFYSKS-S-KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 361 v~viDg~~l~lt---~l~~~~v--pppm~~~~l~~~~~V~~Vafspdg-~-~~~lAs~~~dg~v~lw~~~~ 424 (1196)
........+.++ +...... |.+.....-.|.+.|++|+|+|.. . .+.|++++.||+|++|++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred chhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 000000001111 1111110 111011112588999999977543 0 15999999999999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-25 Score=255.45 Aligned_cols=301 Identities=12% Similarity=0.073 Sum_probs=218.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..|+. .+++. +.+ +..+ .+.|.+++|+|+++.|++++.||+|++
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~--~~~~~---~~~----~~~h----~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYS--LNGER---LGT----LDGH----TGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEET--TTCCE---EEE----ECCC----SSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeC--CCchh---hhh----hhhc----CCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 7999999999999999999999999998 44433 111 3333 468999999999999999999999999
Q ss_pred EECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCC-----ceEEEEeccCc-eeeeeecccccCccccccCccccCCC
Q 000992 102 HSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGF-----GQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 102 w~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d-----~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
||..+++.. ... +...|.+++|+|||+.|++++.+ ++|.+|+.... ......... ...+ ..+..+..
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---~~~~--~~~~~~~~ 174 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS---EEPI--HKIITHEG 174 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC---SSCS--EEEECCTT
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc---ccee--eeccCCcC
Confidence 999887654 444 68899999999999999999999 99999863211 111111000 0001 01113333
Q ss_pred --CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 175 --FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 175 --~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
.+.+++|+|||++|+ +++ .++.|++||..+ ++.......+.+.+.+++|+|+|++|++++.+ ..
T Consensus 175 ~~~~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~ 241 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYII-AGH------KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD------TN 241 (369)
T ss_dssp CCCEEEEEECGGGCEEE-EEE------TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT------SE
T ss_pred ccceeEEEEcCCCCEEE-EEc------CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC------ce
Confidence 789999999999999 665 468999999977 78888888899999999999999999999885 47
Q ss_pred EEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccC
Q 000992 252 IVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
|.+|+.. +.....+. ....+..++|+|+|+.|++++.++ .+.+|...... .......|+..
T Consensus 242 i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~-----------~~~~i~~~d~~ 303 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQE---AKDVTTTSANE-----------GKFEARFYHKI 303 (369)
T ss_dssp EEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC---------------------------CEEEEEETT
T ss_pred EEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCC---CceEEEEecCC-----------CcceeEEEecC
Confidence 9999954 44333332 345799999999999999999887 45554433210 00011223322
Q ss_pred CCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE
Q 000992 331 KPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 331 ~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA 409 (1196)
... .+ ..+ .|...|.+++|+|++ +.||
T Consensus 304 ~~~----------------------------------~~----------------~~~~~~~~~v~~~~~s~~~--~~l~ 331 (369)
T 3zwl_B 304 FEE----------------------------------EI----------------GRVQGHFGPLNTVAISPQG--TSYA 331 (369)
T ss_dssp TCC----------------------------------EE----------------EEEECCSSCEEEEEECTTS--SEEE
T ss_pred CCc----------------------------------ch----------------hheecccCcEEEEEECCCC--CEEE
Confidence 211 00 111 266789999999999 8999
Q ss_pred EEECCCcEEEEeCCC
Q 000992 410 AILSDGCLCVVDLPA 424 (1196)
Q Consensus 410 s~~~dg~v~lw~~~~ 424 (1196)
+++.||+|++|++..
T Consensus 332 s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 332 SGGEDGFIRLHHFEK 346 (369)
T ss_dssp EEETTSEEEEEEECH
T ss_pred EEcCCCeEEEEECcc
Confidence 999999999999975
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-26 Score=268.07 Aligned_cols=242 Identities=13% Similarity=0.104 Sum_probs=187.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.++ +.|.+++.|+.|..||+ .+++..... ...+.+| .+.|.+++|+|||+.|++++.||+|++
T Consensus 84 ~v~~~~~s~d-~~l~~~s~dg~v~lWd~--~~~~~~~~~---~~~~~~H----~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 84 GVADLTWVGE-RGILVASDSGAVELWEL--DENETLIVS---KFCKYEH----DDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp CEEEEEEETT-TEEEEEETTSEEEEEEE--CTTSSCEEE---EEEEECC----SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CEEEEEEeCC-CeEEEEECCCEEEEEec--cCCCceeEe---eccccCC----CCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 5788999998 46778999999999999 554431111 1112234 468999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||..++++ .....|.+.|.+++|||||. +||+++.|++|++|+ +...+....... .+...+.+
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--------------~~~~~~~~ 219 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS--------------APGYLPTS 219 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------CCCEEE
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecc--------------eeecccee
Confidence 99998765 35555799999999999995 789999999999986 333333322211 23346789
Q ss_pred EEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
++|+|+ +++|| +++ .|++|+|||..+|+++.++.+|.+.|.+++|+|+| ++||+++.|. +|++|+
T Consensus 220 ~~~~p~~~~~l~-sg~------~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~------~i~vwd 286 (344)
T 4gqb_B 220 LAWHPQQSEVFV-FGD------ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC------SLAVLD 286 (344)
T ss_dssp EEECSSCTTEEE-EEE------TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTS------CEEEEC
T ss_pred eeecCCCCcceE-Eec------cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC------eEEEEE
Confidence 999995 45777 565 47999999998999999999999999999999998 5899999874 699999
Q ss_pred CCCeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecC
Q 000992 257 RNGLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n 306 (1196)
.+.... +.+.. |.+.|.+|+|||||+ +||+++.|+ +|++|++..
T Consensus 287 ~~~~~~--~~~~~-H~~~V~~v~~sp~~~~llas~s~D~---~v~~w~v~~ 331 (344)
T 4gqb_B 287 SSLSEL--FRSQA-HRDFVRDATWSPLNHSLLTTVGWDH---QVVHHVVPT 331 (344)
T ss_dssp TTCCEE--EEECC-CSSCEEEEEECSSSTTEEEEEETTS---CEEEEECCC
T ss_pred CCCCcE--EEEcC-CCCCEEEEEEeCCCCeEEEEEcCCC---eEEEEECCC
Confidence 764322 23433 467899999999987 678999999 999999875
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-28 Score=280.72 Aligned_cols=239 Identities=11% Similarity=0.072 Sum_probs=174.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCe--E-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~--~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
+.|.+++|+|||+.|++++.||+|++|+..++. . ..+..|.+.|.+++|||||++||+++.|++|++|+.. ..
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~----~~ 87 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR----PD 87 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---------
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CC
Confidence 579999999999999999999999999999873 3 2444578999999999999999999999999987532 11
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc---EEEEecc-CCCceeEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSEL-KAFMGAVL 228 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~---l~~~~e~-~~~~v~sl 228 (1196)
..+... ..+.+|...+.+++|+|||++|+ +++ .+++|+|||..+++ +...... |.+.+.++
T Consensus 88 ~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 88 GTWKQT--------LVLLRLNRAATFVRWSPNEDKFA-VGS------GARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp -CCCCE--------EECCCCSSCEEEEECCTTSSCCE-EEE------SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred Cceeee--------eEecccCCceEEEEECCCCCEEE-EEe------cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 100000 01225667899999999999999 565 46899999997776 3566665 89999999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe---------------eEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGL---------------ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl---------------~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
+|+|+|++||+++.|+ .|++|+.+.. ..++......+...|.+++|||||++||+++.|
T Consensus 153 ~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 226 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADR------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHD 226 (377)
T ss_dssp EECTTSSEEEEEESSS------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETT
T ss_pred EEcCCCCEEEEEeCCC------EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCC
Confidence 9999999999999864 5999995310 112221111345679999999999999999999
Q ss_pred CCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcE
Q 000992 294 EEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
+ +|++|++.+... .+.+.+..+......+.|+|++.. |..+. ++.+
T Consensus 227 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~-~~~~ 274 (377)
T 3dwl_C 227 S---SVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAI-VAAGY-NYSP 274 (377)
T ss_dssp T---EEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEE-EEEES-SSSE
T ss_pred C---cEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCE-EEEEc-CCcE
Confidence 9 999999987542 112344444334488999999854 55554 3444
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=264.50 Aligned_cols=285 Identities=11% Similarity=0.045 Sum_probs=205.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccc------cccccccC-CCCCCEEEEEEccCCCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAIS------AEIEHIDL-EPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~------~~l~~~~~-~~~~~v~~v~~spd~~~La~as 94 (1196)
.+.+++|.+++..|+++++ +.+..|+. ..+.....+..-. ..+..... .....|.+++|+|||+.|++++
T Consensus 66 ~V~~v~fspdg~~la~g~~-~~v~i~~~--~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 66 VVCCVKFSNDGEYLATGCN-KTTQVYRV--SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CCCEEEECTTSSEEEEECB-SCEEEEET--TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEcC-CcEEEEEe--cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 6788999999999998774 56899998 4443311111000 00000000 0023599999999999999999
Q ss_pred CCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccC
Q 000992 95 SSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.||+|++||..+++. ..+..|...|.+++|+|||+.|++++.|++|++|+. ........ .+
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----------------~~ 205 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-----------------SI 205 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------------EC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-----------------Ec
Confidence 999999999998765 355567899999999999999999999999999963 22222111 12
Q ss_pred CCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-------ccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 173 FSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-------ELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 173 ~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-------e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
.+.+.+++|+| ||++|| +++ .|++|+|||..+|++.... .+|.+.+.+++|+|+|++||+++.|
T Consensus 206 ~~~v~~~~~~~~~~~~l~-~~s------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d- 277 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIA-AGS------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD- 277 (393)
T ss_dssp SSCEEEEEECSTTCCEEE-EEE------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred CCCcEEEEEECCCCCEEE-EEc------CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC-
Confidence 34679999999 999999 565 4689999999899887766 4688889999999999999999986
Q ss_pred CCCCCCeEEEEeCCCeeE---------E--EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 245 SENKCPSIVFYERNGLER---------S--SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~---------~--~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
..|++|+...... + ...+.. +...|.+++|+|+|++|++++.|+ +|++|+..+... ..
T Consensus 278 -----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~---~v~iwd~~~~~~--~~ 346 (393)
T 1erj_A 278 -----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGNP--LL 346 (393)
T ss_dssp -----SEEEEEEC---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCCE--EE
T ss_pred -----CEEEEEECCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCeE--EE
Confidence 4799998542110 0 112222 356799999999999999999999 999999987653 23
Q ss_pred EEEEecCCcEEEEEccCC-----CceEEEEecCCcEE
Q 000992 314 EIRYLRRDGIRFMWHPTK-----PLQLICWTLDGQIT 345 (1196)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~-----~~~L~~~~~~g~~~ 345 (1196)
.+..|......+.|+|.. ...|+.++.||.+.
T Consensus 347 ~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 455554445788888742 22355555555554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=259.64 Aligned_cols=250 Identities=14% Similarity=0.189 Sum_probs=192.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..|++ ..+... .+.+ +.+| .+.|.+++|+|+ ++.|++++.||+|
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~--~~~~~~-~~~~----l~gH----~~~V~~v~~s~~~~g~~l~s~s~D~~v 79 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEV--EGETHK-LIDT----LTGH----EGPVWRVDWAHPKFGTILASCSYDGKV 79 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEB--CSSCBC-CCEE----ECCC----SSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEec--CCCCcE-EEEE----Eccc----cCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence 7889999999999999999999999998 332211 1111 4445 468999999864 8999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++||..++. +.....|...|.+++|+|| |.+||+++.|++|++|+..-... ... ..+.+|..
T Consensus 80 ~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~--~~~-----------~~~~~h~~ 146 (297)
T 2pm7_B 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT--TSP-----------IIIDAHAI 146 (297)
T ss_dssp EEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC--BCC-----------EEEECCSS
T ss_pred EEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc--eee-----------eeeecccC
Confidence 999998763 2344557889999999998 89999999999999986321100 000 01235667
Q ss_pred CeEEEEEccC-------------CceEEEeeccccccCCCCEEEEEECCCCc----EEEEeccCCCceeEEEEcCCC---
Q 000992 175 FKSPISWRGD-------------GKYFATLSEFCNSSKLHKRLKVWERDSGT----LQASSELKAFMGAVLEWMPSG--- 234 (1196)
Q Consensus 175 ~v~~isWspD-------------G~~lAsvss~d~~~~~d~~irVWd~~~G~----l~~~~e~~~~~v~slawsPdG--- 234 (1196)
.+.+++|+|+ |++|| +++ .|++|||||..+++ +..++++|.+.|.+++|+|+|
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~-sgs------~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~ 219 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFV-TGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR 219 (297)
T ss_dssp CEEEEEECCCC------------CCEEE-EEE------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred ccceEeecCCcccccccCCCCCCcceEE-EEc------CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCc
Confidence 8899999997 57899 565 46899999986666 667888999999999999995
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCee--EEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLE--RSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWY 310 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~--~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wy 310 (1196)
++||+++.|. +|++|+.+... .....+. ..+...|.+++|||||++||+++.|+ +|+||+.. +.+|.
T Consensus 220 ~~las~s~D~------~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~---~v~lw~~~~~g~w~ 290 (297)
T 2pm7_B 220 SYMASVSQDR------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKENLEGKWE 290 (297)
T ss_dssp EEEEEEETTS------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTSCEE
T ss_pred eEEEEEECCC------cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC---cEEEEEECCCCcEE
Confidence 8999999874 69999865311 0111221 22356799999999999999999999 99999986 56674
Q ss_pred E
Q 000992 311 L 311 (1196)
Q Consensus 311 l 311 (1196)
.
T Consensus 291 ~ 291 (297)
T 2pm7_B 291 P 291 (297)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=294.35 Aligned_cols=264 Identities=11% Similarity=0.018 Sum_probs=187.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
.++|.+|+|||||+.+|+|+.|++|+ |...++ .+..|...|++++||||| .++++.+|+.....+
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~---- 79 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGL---- 79 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCS----
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc--eecCCCccEEEEEECCCC-------CcceEEEEeCCCceE----
Confidence 36899999999999999999999999 655432 334579999999999999 466654443211110
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-----ceeEEE
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-----MGAVLE 229 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-----~v~sla 229 (1196)
+ . + .+.+.|.+++|||||++|| +++ .+++|+|||+ ++ ++.+++ |.. .+.+++
T Consensus 80 ~-~-----------~-~~~~~V~~vawSPdG~~LA-s~s------~dg~V~iwd~-~~-~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 80 L-N-----------S-QPVCYPRVCKPSPIDDWMA-VLS------NNGNVSVFKD-NK-MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp S-T-----------T-SCSCCEEEEEECSSSSCEE-EEE------TTSCEEEEET-TE-EEEECC-CSSCSTTTCEEEEE
T ss_pred e-e-----------c-CCCCcEEEEEECCCCCEEE-EEe------CCCcEEEEeC-Cc-eeeecc-CCCccccccEEEEE
Confidence 0 0 0 2346789999999999999 676 4689999998 55 666666 665 489999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCee--------EEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLE--------RSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~--------~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
|||||++||+|+.| .+|++|+..+.. ...+... ..+..+|.+|+||||| ||+++.|+ +|+
T Consensus 137 fSPDG~~LAsgs~D------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~---tVr 205 (588)
T 2j04_A 137 WNPIESSIVVGNED------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNN---SVF 205 (588)
T ss_dssp ECSSSSCEEEEETT------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTC---CEE
T ss_pred EcCCCCEEEEEcCC------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCC---eEE
Confidence 99999999999996 479999976542 1222211 2245789999999999 78888888 999
Q ss_pred EEEecCCEEE-EEEEEE-EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC
Q 000992 301 ICFFSNNHWY-LKYEIR-YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL 378 (1196)
Q Consensus 301 lW~~~n~~wy-lkq~l~-~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~ 378 (1196)
+|+..+..-. ..+++. .+...+..++|+ + ..|++.. +| +|++|++....
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~-------------------------tIkLWd~~~~~ 256 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PG-------------------------YVHKIDLKNYS 256 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SS-------------------------EEEEEETTTTE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CC-------------------------eEEEEECCCCe
Confidence 9999764410 112342 332234677787 3 3344433 33 44444433211
Q ss_pred CCCCceeeeecCCCCEEEEEE--ecCCCCCEEEEEECCCcEEEEeCC
Q 000992 379 MPPPMYLFSLKFPTAVTEMAF--YSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 379 vpppm~~~~l~~~~~V~~Vaf--spdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
......+|.+.|++|+| |||+ +.|+++..||+ ++|..+
T Consensus 257 ----~~~~~~gh~~~V~~va~~~s~d~--~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 257 ----ISSLKTGSLENFHIIPLNHEKES--TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp ----EEEEECSCCSCCCEEEETTCSSC--EEEEECSSCEE-EEEESS
T ss_pred ----EEEEEcCCCceEEEEEeeeCCCC--CEEEEEcCCCC-EEEeec
Confidence 01123368899999999 9999 89999999999 999875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=251.22 Aligned_cols=274 Identities=12% Similarity=0.073 Sum_probs=208.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++.|+.|..|+. ..++.. .. +.+| ...|.+++|+|+++.|++++.||+|++
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~--~~~~~~---~~----~~~h----~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGA--YDGKFE---KT----ISGH----KLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TTCCEE---EE----ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeC--CCcccc---hh----hccC----CCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 7899999999999999999999999998 444331 11 3333 357999999999999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+++. ..+..|.+.|.+++|+|||++|++++.|++|++|+. ....+.. +..|...+.++
T Consensus 92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----------------~~~~~~~v~~~ 155 (312)
T 4ery_A 92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT----------------LPAHSDPVSAV 155 (312)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE----------------ECCCSSCEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE----------------ecCCCCcEEEE
Confidence 99988654 455567899999999999999999999999999873 2332222 22455678999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+|+|||++|+ +++ .|++|+|||..+++...... .+...+..++|+|+|++|++++.+ ..|++|+..
T Consensus 156 ~~~~~~~~l~-~~~------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~iwd~~ 222 (312)
T 4ery_A 156 HFNRDGSLIV-SSS------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD------NTLKLWDYS 222 (312)
T ss_dssp EECTTSSEEE-EEE------TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT------TEEEEEETT
T ss_pred EEcCCCCEEE-EEe------CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC------CeEEEEECC
Confidence 9999999999 565 46899999998888877653 456678999999999999999986 479999954
Q ss_pred -CeeEEEEEeccCC-C-CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 259 -GLERSSFDINEQI-D-STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 259 -Gl~~~~f~l~~~~-~-~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
|..... +..+. . ..+......+++++|++++.|+ +|++|++.+.. +.+.+..+......+.|+|+++. +
T Consensus 223 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~-l 294 (312)
T 4ery_A 223 KGKCLKT--YTGHKNEKYCIFANFSVTGGKWIVSGSEDN---LVYIWNLQTKE--IVQKLQGHTDVVISTACHPTENI-I 294 (312)
T ss_dssp TTEEEEE--ECSSCCSSSCCCEEEECSSSCEEEECCTTS---CEEEEETTTCC--EEEEECCCSSCEEEEEECSSSSE-E
T ss_pred CCcEEEE--EEecCCceEEEEEEEEeCCCcEEEEECCCC---EEEEEECCCch--hhhhhhccCCcEEEEeecCcCCc-e
Confidence 433332 22221 1 1233334457899999999999 99999998764 33455544444488999999875 5
Q ss_pred EEEe--cCCcEE
Q 000992 336 ICWT--LDGQIT 345 (1196)
Q Consensus 336 ~~~~--~~g~~~ 345 (1196)
..++ .||.+.
T Consensus 295 ~s~~~~~d~~i~ 306 (312)
T 4ery_A 295 ASAALENDKTIK 306 (312)
T ss_dssp EEEECTTTCCEE
T ss_pred EEEEccCCccEE
Confidence 5554 356654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=276.12 Aligned_cols=325 Identities=11% Similarity=0.025 Sum_probs=227.8
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCC---Ce---EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDG---NA---TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD- 146 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~---~~---~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~- 146 (1196)
.+.|.+++|+| +++.|++|+.||+|++||..+ +. ......|.+.|.+++|+|||+.||+++.|++|++|+..
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 36899999999 999999999999999999865 32 12222378999999999999999999999999999642
Q ss_pred ---CceeeeeecccccCccccccCcccc--CCCCeEEEE--EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 147 ---WDLLYENPLEELAEGFDVHEPELSS--SFSFKSPIS--WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 147 ---~d~~~~~~l~~~~~~~~Vs~tqf~~--~~~~v~~is--WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
...+.....+ .+....|.+ +...+.++. |+|||.+|+ +++ .+++|++||..++++..++.
T Consensus 143 ~~~~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 143 YQQESEVKFLNCE------CIRKINLKNFGKNEYAVRMRAFVNEEKSLLV-ALT------NLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp EEETTEEEEEEEE------EEEEEEGGGGSSCCCEEEEEEEECSSCEEEE-EEE------TTSEEEEEETTTCCEEEEEE
T ss_pred ccCCceeeccccc------eeEEEEccCcccccCceEEEEEEcCCCCEEE-EEe------CCCeEEEEeCCCCeeeEEEc
Confidence 2222111111 111122333 556777887 789999999 565 46999999999999999887
Q ss_pred c--CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEc----cCCCeeEEEEc
Q 000992 220 L--KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWN----CMSDLLAAVVR 292 (1196)
Q Consensus 220 ~--~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWS----pDg~~LAs~~~ 292 (1196)
. |.+.+.+++|+|+|++||+++.|+ .|++|+. +|.....+ ...+...|.+++|+ |||++||+++.
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~s~~~~~l~s~~~ 281 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIRFNVLIRSW--SFGDHAPITHVEVCQFYGKNSVIVVGGSS 281 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETTTTEEEEEE--BCTTCEEEEEEEECTTTCTTEEEEEEEST
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcCCccEEEEE--ecCCCCceEEEEeccccCCCccEEEEEcC
Confidence 7 789999999999999999999864 6999995 45444433 22344579999665 57889999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
|+ +|++|++.+... .+.+..+......+.|+|++... .+ . .
T Consensus 282 dg---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l-----~~------------------------~-~---- 322 (437)
T 3gre_A 282 KT---FLTIWNFVKGHC--QYAFINSDEQPSMEHFLPIEKGL-----EE------------------------L-N---- 322 (437)
T ss_dssp TE---EEEEEETTTTEE--EEEEESSSSCCCGGGGSCBCSSG-----GG------------------------C-C----
T ss_pred CC---cEEEEEcCCCcE--EEEEEcCCCCCccceeccccccc-----cc------------------------c-e----
Confidence 99 999999987642 22332221111233444443220 00 0 0
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCce---eeee---------
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEF---VVEA--------- 440 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~---~~~~--------- 440 (1196)
+ ....|...|.+++|+ ++ +.|++++.||+|++|++.+..+...+.|+.- ....
T Consensus 323 -~-----------~~~~~~~~v~~l~~~-~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (437)
T 3gre_A 323 -F-----------CGIRSLNALSTISVS-ND--KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTM 387 (437)
T ss_dssp -C-----------CCCCSGGGGCCEEEE-TT--EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEE
T ss_pred -e-----------cccccCCceEEEEEC-Cc--eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEE
Confidence 0 011266789999999 66 7999999999999999988766655554311 0000
Q ss_pred ---e----------cccccCCcEEEEEEecC--CeEEEEEecCCCCceEEE
Q 000992 441 ---C----------ISETAFGSVIHLIWLGS--HLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 441 ---~----------~~~~~~~~v~~l~~~~d--~~lla~~~~~~~~~~~~~ 476 (1196)
. ....|.+.|..++|+++ +.+|++++.+ ..+.+|
T Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d--G~I~iw 436 (437)
T 3gre_A 388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS--GLIGIF 436 (437)
T ss_dssp EEEECC-------------CCCEEEEEEEESSSSEEEEEEETT--SCEEEE
T ss_pred EEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCC--ceEEEe
Confidence 0 00126678999999998 7888888765 566666
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-25 Score=251.07 Aligned_cols=299 Identities=15% Similarity=0.134 Sum_probs=215.1
Q ss_pred eeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+.+|.+.|++++|||| |++||+++.|++|++|+.. .+.....+.. .+.+|...|.+++|+|||++|+
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~-----------~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR-----------ALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE-----------EECCCSSCEEEEEECTTSSEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE-----------EEeCCCCCEEEEEECCCCCEEE
Confidence 3447999999999998 6899999999999999732 2222222222 2346778899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE 269 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~ 269 (1196)
+++ .|+.|++|+...+........+...+....|+|++++|++++.|+ .+++|+..+.......+ .
T Consensus 103 -s~~------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~------~~~~~d~~~~~~~~~~~-~ 168 (340)
T 4aow_A 103 -SGS------WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK------TIKLWNTLGVCKYTVQD-E 168 (340)
T ss_dssp -EEE------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEECS-S
T ss_pred -EEc------ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCC------eEEEEEeCCCceEEEEe-c
Confidence 565 468999999988887777777888889999999999999999864 59999976644332222 2
Q ss_pred CCCCcEEEEEEccCCC--eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEE
Q 000992 270 QIDSTVELLKWNCMSD--LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~--~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
.+...|..++|++++. ++++++.|+ +|++|+..+... ...+..+......+.|+|++.. |++++.||.+
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~---~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~-l~s~s~Dg~i--- 239 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDK---LVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQA--- 239 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTS---CEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSE-EEEEETTCEE---
T ss_pred cccCcccceEEccCCCCcEEEEEcCCC---EEEEEECCCCce--eeEecCCCCcEEEEEECCCCCE-EEEEeCCCeE---
Confidence 3456799999998864 678888998 999999988653 3344444334488999998864 6666655544
Q ss_pred EEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 348 NFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 348 ~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
++|+++.. ...+.+.+...|.+++|+|++ .+++++.|++|++|+..+...
T Consensus 240 ----------------------~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~---~~~~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 240 ----------------------MLWDLNEG-----KHLYTLDGGDIINALCFSPNR---YWLCAATGPSIKIWDLEGKII 289 (340)
T ss_dssp ----------------------EEEETTTT-----EEEEEEECSSCEEEEEECSSS---SEEEEEETTEEEEEETTTTEE
T ss_pred ----------------------EEEEeccC-----ceeeeecCCceEEeeecCCCC---ceeeccCCCEEEEEECCCCeE
Confidence 33333211 122344566789999999997 455666899999999986544
Q ss_pred cccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 428 LEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 428 ~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
...+.+.... .....+...|..++|+|||++|++++.+ ..+.+|++.
T Consensus 290 ~~~~~~~~~~---~~~~~h~~~v~~l~~s~dg~~l~sgs~D--g~v~iW~~~ 336 (340)
T 4aow_A 290 VDELKQEVIS---TSSKAEPPQCTSLAWSADGQTLFAGYTD--NLVRVWQVT 336 (340)
T ss_dssp EEEECCC----------CCCCCEEEEEECTTSSEEEEEETT--SCEEEEEEE
T ss_pred EEecccccee---eeccCCCCCEEEEEECCCCCEEEEEeCC--CEEEEEeCC
Confidence 3222221110 0012455689999999999999998876 689999874
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=255.07 Aligned_cols=304 Identities=10% Similarity=0.069 Sum_probs=209.1
Q ss_pred CCCEEEEEEccCCCEEE-EEEC---CCcEEEEECCCCeEE--EeeeecCcEEEEEECCC---CCEEEEEeCCceEEEEec
Q 000992 75 GDSITAFDYLMEKEALI-VGTS---SGLLLLHSVDGNATE--VVGRVEGGVRFISPSPD---GDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La-~as~---dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPD---g~~LA~~s~d~tV~l~~~ 145 (1196)
.+.|.+++|+|++..++ +++. ||+|++|+..+++.. ....|.+.|.+++|+|+ |++||+++.|++|.+|+.
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 36899999999997665 5554 999999999987653 23346889999999999 799999999999999863
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEE------EccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEe
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS------WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASS 218 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is------WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~ 218 (1196)
.-.. .... .+.+|...+.++. |+|||++|+ +++ .+++|+|||..+++ .....
T Consensus 98 ~~~~---~~~~-----------~~~~~~~~v~~~~~~~~~~~s~~~~~l~-~~~------~d~~i~vwd~~~~~~~~~~~ 156 (357)
T 3i2n_A 98 EAPE---MPVY-----------SVKGHKEIINAIDGIGGLGIGEGAPEIV-TGS------RDGTVKVWDPRQKDDPVANM 156 (357)
T ss_dssp TSCS---SCSE-----------EECCCSSCEEEEEEESGGGCC-CCCEEE-EEE------TTSCEEEECTTSCSSCSEEE
T ss_pred CCCC---ccEE-----------EEEecccceEEEeeccccccCCCccEEE-EEe------CCCeEEEEeCCCCCCcceec
Confidence 2111 0111 2235667788885 578999999 565 46899999998776 66666
Q ss_pred ccCCC----ceeEEE----EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc---CCCee
Q 000992 219 ELKAF----MGAVLE----WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC---MSDLL 287 (1196)
Q Consensus 219 e~~~~----~v~sla----wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~L 287 (1196)
..+.+ .+.+++ |+|+|++|++++.+ ..|.+|+........ .. .+...|.+++|+| +++.|
T Consensus 157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~--~~-~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN------GDIKLFDLRNMALRW--ET-NIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT------SEEEEEETTTTEEEE--EE-ECSSCEEEEEESCSSSSCCEE
T ss_pred cccCCCCCCceEEEEEEeccCCCCCEEEEEccC------CeEEEEECccCceee--ec-CCCCceEEEEcCCCCCCCCEE
Confidence 65554 678888 89999999999985 479999965433211 11 2346799999999 99999
Q ss_pred EEEEccCCcceEEEEEecCCEEE--E-EEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEE
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWY--L-KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVI 364 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wy--l-kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~vi 364 (1196)
++++.|+ .|++|++.+.... + ...+..+......+.|+|++...+.+++.+|.+.+ |++...........
T Consensus 228 ~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i----wd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 228 VATSLEG---KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL----WKYEYPIQRSKKDS 300 (357)
T ss_dssp EEEESTT---EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE----EEEECCSCC--CCT
T ss_pred EEECCCC---eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE----eecCCCcccccccC
Confidence 9999999 9999998753321 1 01112232334889999998756778887887754 43331100000000
Q ss_pred cCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEE-EEECCCcEEEEeCCC
Q 000992 365 DGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLA-AILSDGCLCVVDLPA 424 (1196)
Q Consensus 365 Dg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lA-s~~~dg~v~lw~~~~ 424 (1196)
+|... ..........++ .|...|.+++|+|++ +.|+ +++.||+|++|++..
T Consensus 301 ~g~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 301 EGIEM-------GVAGSVSLLQNVTLSTQPISSLDWSPDK--RGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp TSCCC-------CCCCEEEEEEEEECCSSCEEEEEECSSS--TTEEEEEETTSEEEEEEECC
T ss_pred CCCcc-------ccccccceeeccccCCCCeeEEEEcCCC--CeEEEEecCCCcEEEEECCC
Confidence 11000 000000122333 478899999999999 7888 799999999999875
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-25 Score=247.29 Aligned_cols=277 Identities=12% Similarity=0.061 Sum_probs=210.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
.+.|.+++| |+++.|++++.||.|++||..++.. .....|.+.|.+++|||||+.|++++.|+.|.+|+. ++.....
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~-~~~~~~~ 95 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL-FATSGED 95 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET-TCCTTSC
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe-eecCCCC
Confidence 468999999 9999999999999999999988765 355667899999999999999999999999999863 2221111
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP- 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP- 232 (1196)
... .+.+|...+.+++| +|.+|+ +++ .+++|++|| .++.......+.+.+.+++|+|
T Consensus 96 ~~~-----------~~~~~~~~i~~~~~--~~~~l~-~~~------~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 153 (313)
T 3odt_A 96 PLY-----------TLIGHQGNVCSLSF--QDGVVI-SGS------WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF 153 (313)
T ss_dssp C-C-----------EECCCSSCEEEEEE--ETTEEE-EEE------TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET
T ss_pred ccc-----------chhhcccCEEEEEe--cCCEEE-EEe------CCCCEEEEc--CCcEEEecccCCCceeEEEEccC
Confidence 111 22356778899999 677888 565 468999999 6778888888999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+++++++++.++ .|.+|+.. .... .+...+...|..++|+|+|. |++++.|+ .|++|++.+.. ..
T Consensus 154 ~~~~l~~~~~d~------~i~i~d~~-~~~~--~~~~~~~~~i~~~~~~~~~~-~~~~~~dg---~i~i~d~~~~~--~~ 218 (313)
T 3odt_A 154 SENKFLTASADK------TIKLWQND-KVIK--TFSGIHNDVVRHLAVVDDGH-FISCSNDG---LIKLVDMHTGD--VL 218 (313)
T ss_dssp TTTEEEEEETTS------CEEEEETT-EEEE--EECSSCSSCEEEEEEEETTE-EEEEETTS---EEEEEETTTCC--EE
T ss_pred CCCEEEEEECCC------CEEEEecC-ceEE--EEeccCcccEEEEEEcCCCe-EEEccCCC---eEEEEECCchh--hh
Confidence 999999999864 69999943 2222 33443567899999999999 99999999 99999998754 23
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCC
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFP 391 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~ 391 (1196)
..+..+......+.|+|++ . +.+++.+|.+. .|+ ++.. .....+ .+.
T Consensus 219 ~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~----iwd---------------------~~~~-----~~~~~~~~~~ 266 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVR----IWS---------------------KENG-----SLKQVITLPA 266 (313)
T ss_dssp EEEECCSSCEEEEEECTTS-C-EEEEETTSEEE----EEC---------------------TTTC-----CEEEEEECSS
T ss_pred hhhhcCCceEEEEEEecCC-C-EEEEecCCEEE----EEE---------------------CCCC-----ceeEEEeccC
Confidence 3444443344889999988 3 66666666543 232 2211 111223 256
Q ss_pred CCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 392 TAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 392 ~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..|.+++|+|++ + +++++.||.|++|++.+.
T Consensus 267 ~~i~~~~~~~~~--~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 267 ISIWSVDCMSNG--D-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp SCEEEEEECTTS--C-EEEEETTSCEEEEESCGG
T ss_pred ceEEEEEEccCC--C-EEEEeCCCcEEEEeCCCC
Confidence 689999999999 5 667899999999999864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-25 Score=251.43 Aligned_cols=283 Identities=10% Similarity=-0.035 Sum_probs=205.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
.+.|.+++|+||++.|++++.||.|++||..+++. ..+..|.+.|.+++|||||++||+++.|++|.+|+. ....+..
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 111 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 46899999999999999999999999999987654 466667899999999999999999999999999973 3333332
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-----------EEEEeccC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-----------LQASSELK 221 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-----------l~~~~e~~ 221 (1196)
.. +...+.+++|+|||++|+ +++.+.. ..++.|++||..++. .......+
T Consensus 112 ~~-----------------~~~~v~~~~~~~~~~~l~-~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 112 WK-----------------SPVPVKRVEFSPCGNYFL-AILDNVM-KNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp EE-----------------CSSCEEEEEECTTSSEEE-EEECCBT-TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred ee-----------------cCCCeEEEEEccCCCEEE-EecCCcc-CCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 22 235679999999999999 5542100 123899999985543 12223334
Q ss_pred CC--ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 222 AF--MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 222 ~~--~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
.+ .+.+++|+|+|++|++++.+ ..|.+|+... .... .+.. +...|.+++|+|||++|++++.|+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d~--- 240 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGHKD------GKISKYDVSNNYEYVD--SIDL-HEKSISDMQFSPDLTYFITSSRDT--- 240 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEETT------SEEEEEETTTTTEEEE--EEEC-CSSCEEEEEECTTSSEEEEEETTS---
T ss_pred cCccceeEEEEcCCCCEEEEEcCC------CEEEEEECCCCcEeEE--EEec-CCCceeEEEECCCCCEEEEecCCc---
Confidence 44 78999999999999999885 4799999653 3332 2332 356799999999999999999999
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecccc
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLS 377 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~ 377 (1196)
.|++|++.+... ...+. +......+.|+|++
T Consensus 241 ~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~---------------------------------------------- 271 (369)
T 3zwl_B 241 NSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLK---------------------------------------------- 271 (369)
T ss_dssp EEEEEETTTCCE--EEEEE-CSSCEEEEEECSSS----------------------------------------------
T ss_pred eEEEEECCCCce--eeeec-CCCCceeEEecCCC----------------------------------------------
Confidence 999999876432 11111 11111444455544
Q ss_pred CCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC--------------cEEEEeCCCCCccccccCCceeeeeecc
Q 000992 378 LMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG--------------CLCVVDLPAPDMLEDLEGTEFVVEACIS 443 (1196)
Q Consensus 378 ~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg--------------~v~lw~~~~~~~~~~~~g~~~~~~~~~~ 443 (1196)
+.+++++.++ .+++|+..+......+.
T Consensus 272 ----------------------------~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~----------- 312 (369)
T 3zwl_B 272 ----------------------------EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ----------- 312 (369)
T ss_dssp ----------------------------SEEEEEECCC-------------CEEEEEETTTCCEEEEEE-----------
T ss_pred ----------------------------ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-----------
Confidence 3444444433 78999987654442222
Q ss_pred cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 444 ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 444 ~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+...|..++|+|++.+|++++.+ ..+.+|.+.
T Consensus 313 -~~~~~v~~~~~s~~~~~l~s~~~d--g~v~iw~~~ 345 (369)
T 3zwl_B 313 -GHFGPLNTVAISPQGTSYASGGED--GFIRLHHFE 345 (369)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETT--SEEEEEEEC
T ss_pred -cccCcEEEEEECCCCCEEEEEcCC--CeEEEEECc
Confidence 234689999999999999998865 688999884
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=270.03 Aligned_cols=282 Identities=10% Similarity=0.040 Sum_probs=210.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|..||. .++.. +.+ +..| ...|.+++|+|+|+.|++++.||.|++
T Consensus 68 ~V~~~~~sp~~~~l~s~s~D~~v~iWd~--~~~~~---~~~----~~~h----~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 68 KVYSLDWTPEKNWIVSASQDGRLIVWNA--LTSQK---THA----IKLH----CPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEET--TTTEE---EEE----EECC----CTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred EEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCcc---ceE----EecC----CCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 7899999999999999999999999998 44432 111 3333 357999999999999999999999999
Q ss_pred EECCCCe--------EEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCcccc
Q 000992 102 HSVDGNA--------TEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 102 w~~~~~~--------~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|+..+.. ...+..|.+.|.+++|+|++ ..|++++.|++|++|+. ....+...... ...+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~-----------~~~~ 203 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-----------FPSG 203 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC-----------SSSS
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc-----------cCCC
Confidence 9986421 22344578899999999985 56999999999999863 22222211100 0125
Q ss_pred CCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 172 SFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 172 ~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
|...+.+++|+| |+.+|+ +++ .|++|+|||.. +++...++.+|.+.|.+++|+|+|++||+++.|+
T Consensus 204 h~~~v~~~~~~~~~~~~l~-sgs------~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~----- 271 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFI-SGS------CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG----- 271 (380)
T ss_dssp CCSCEEEEEECSSSCCEEE-EEE------TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSS-----
T ss_pred CccCeEEEEeecCCCCEEE-EEE------CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCC-----
Confidence 677899999977 899999 565 47999999985 5677888899999999999999999999999875
Q ss_pred CeEEEEeC-CCeeEEEEEeccC----CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE----EecC
Q 000992 250 PSIVFYER-NGLERSSFDINEQ----IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR----YLRR 320 (1196)
Q Consensus 250 ~~V~~~e~-nGl~~~~f~l~~~----~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~----~~~~ 320 (1196)
+|++|+. +|.....+..... ....|.+++|||+|++|++++.|+ .|++|+....... ..+. .|..
T Consensus 272 -~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg---~i~vwd~~~~~~~--~~~~~~~~~h~~ 345 (380)
T 3iz6_a 272 -TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG---DCYVWDTLLAEMV--LNLGTLQNSHEG 345 (380)
T ss_dssp -CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS---CEEEEETTTCCEE--EEECCSCSSCCC
T ss_pred -eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC---CEEEEECCCCceE--EEEecccCCCCC
Confidence 6999995 4544333322110 112489999999999999999999 9999998765421 2221 1222
Q ss_pred CcEEEEEccCCCceEEEEecCCcEEE
Q 000992 321 DGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
...++.|+|++.. |..++.||.+.+
T Consensus 346 ~v~~l~~s~dg~~-l~sgs~D~~i~i 370 (380)
T 3iz6_a 346 RISCLGLSSDGSA-LCTGSWDKNLKI 370 (380)
T ss_dssp CCCEEEECSSSSE-EEEECTTSCEEE
T ss_pred ceEEEEECCCCCE-EEEeeCCCCEEE
Confidence 3388999999875 677777776653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=256.33 Aligned_cols=250 Identities=10% Similarity=0.100 Sum_probs=195.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++.++.|+.|+. ..++.. .+.+ +.+| .+.|.+++|+|+++.|++++.||+|++
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~--~~~~~~-~~~~----~~~h----~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWV-QVHE----LKEH----NGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEE--ETTEEE-EEEE----EECC----SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC--CCCcEE-eeee----ecCC----CCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 7899999999999999999999999999 444310 1111 3333 358999999999999999999999999
Q ss_pred EECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||..+++.. ....|...|.+++|+|||++||+++.|++|.+|+..-......... ...+|...+.+
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~-----------~~~~~~~~i~~ 147 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-----------IKKPIRSTVLS 147 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-----------ECTTCCSCEEE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee-----------eecccCCCeeE
Confidence 999887632 2345688999999999999999999999999986321110000000 01245678899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEEC------------------CCCcEEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWER------------------DSGTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~------------------~~G~l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
++|+|||++|+ +++ .++.|++||. .+|++...+.+|.+.+.+++|+|+|++|+++
T Consensus 148 ~~~~~~~~~l~-~~~------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 148 LDWHPNSVLLA-AGS------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp EEECTTSSEEE-EEE------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEcCCCCEEE-EEc------CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 99999999999 565 4689999993 4688999888899999999999999999999
Q ss_pred ecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC--CEEEEEE
Q 000992 241 YDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN--NHWYLKY 313 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n--~~wylkq 313 (1196)
+.| ..|++|+. +|.....+ .. +...|.+++|+|||++|+++ .|+ .|++|+..+ ..|.+.+
T Consensus 221 ~~d------~~i~i~d~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~-~d~---~i~i~~~~~~~~~~~~~~ 283 (372)
T 1k8k_C 221 SHD------STVCLADADKKMAVATL--AS-ETLPLLAVTFITESSLVAAG-HDC---FPVLFTYDSAAGKLSFGG 283 (372)
T ss_dssp ETT------TEEEEEEGGGTTEEEEE--EC-SSCCEEEEEEEETTEEEEEE-TTS---SCEEEEEETTTTEEEECC
T ss_pred eCC------CEEEEEECCCCceeEEE--cc-CCCCeEEEEEecCCCEEEEE-eCC---eEEEEEccCcCceEEEee
Confidence 986 47999996 45444433 32 34579999999999999988 777 799999988 7775543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=253.47 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=185.0
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~lA 189 (1196)
...|.+.|.+++|||||++||+++.|++|++|+..... ...+ ..+.+|.+.|.+++|+|+ |++||
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~--~~~~-----------~~l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET--HKLI-----------DTLTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC--BCCC-----------EEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC--cEEE-----------EEEccccCCeEEEEecCCCcCCEEE
Confidence 33478999999999999999999999999998743110 0111 123477788999999874 89999
Q ss_pred EeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCe-eEEE
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERSS 264 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~ 264 (1196)
+++ .|++|||||..+|+ ...+...|...+.+++|+|+ |++||+++.| ..|++|+.... ....
T Consensus 72 -s~s------~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 72 -SCS------YDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKENGTTSP 138 (297)
T ss_dssp -EEE------TTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSSSCBCC
T ss_pred -EEc------CCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCCCceee
Confidence 565 47999999997774 45566778899999999998 9999999986 47999995432 1111
Q ss_pred EEeccCCCCcEEEEEEccC-------------CCeeEEEEccCCcceEEEEEecCCE--EEEEEEEEEecCCcEEEEEcc
Q 000992 265 FDINEQIDSTVELLKWNCM-------------SDLLAAVVRFEEYDSVKICFFSNNH--WYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpD-------------g~~LAs~~~d~~~~~V~lW~~~n~~--wylkq~l~~~~~~~~~v~Wsp 329 (1196)
..+.. +...|.+++|+|+ +++||+++.|+ +|+||+..+.. +.+...+..|......+.|+|
T Consensus 139 ~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~---~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp 214 (297)
T 2pm7_B 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (297)
T ss_dssp EEEEC-CSSCEEEEEECCCC------------CCEEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred eeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCC---cEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence 22333 3567999999997 57999999999 99999987532 444455555544458899999
Q ss_pred CC--CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc-eeeeecCCCCEEEEEEecCCCCC
Q 000992 330 TK--PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM-YLFSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~--~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm-~~~~l~~~~~V~~Vafspdg~~~ 406 (1196)
++ +..|+.++.||.+.+ |++ +....+... ....-.|+..|++++|+|+| +
T Consensus 215 ~~~~~~~las~s~D~~v~i----Wd~---------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~ 267 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCII----WTQ---------------------DNEQGPWKKTLLKEEKFPDVLWRASWSLSG--N 267 (297)
T ss_dssp CCSSSEEEEEEETTSCEEE----EEE---------------------SSTTSCCEEEESSSSCCSSCEEEEEECSSS--C
T ss_pred CCCCceEEEEEECCCcEEE----EEe---------------------CCCCCccceeeeecccCCCcEEEEEECCCC--C
Confidence 86 345666666665542 332 211000000 00001367889999999999 8
Q ss_pred EEEEEECCCcEEEEeCCC
Q 000992 407 CLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~~ 424 (1196)
.||+++.||+|+||+...
T Consensus 268 ~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEEETTSCEEEEEECT
T ss_pred EEEEEcCCCcEEEEEECC
Confidence 999999999999999763
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-25 Score=254.42 Aligned_cols=286 Identities=13% Similarity=0.108 Sum_probs=205.0
Q ss_pred CCCEEEEEEccC----CCEEEEEECCCcEEEEECCCC-eEEEeee-----ecCcEEEEEECCC----CCEEEEEeCCceE
Q 000992 75 GDSITAFDYLME----KEALIVGTSSGLLLLHSVDGN-ATEVVGR-----VEGGVRFISPSPD----GDLLGVTTGFGQI 140 (1196)
Q Consensus 75 ~~~v~~v~~spd----~~~La~as~dG~I~lw~~~~~-~~e~vg~-----~~~~I~~~awSPD----g~~LA~~s~d~tV 140 (1196)
.+.|.+++|+|+ ...+++++.+|.|++|+..++ .+..+.. |...|.+++|||| |++||+++.||+|
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i 97 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII 97 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence 468999999995 455666777889999999864 3333332 3477999999999 7799999999999
Q ss_pred EEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 141 LVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 141 ~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
.+|+. ....+.. +.+|...+.+++|+| ||++|+ +++ .|++|+|||..+|+.....
T Consensus 98 ~v~d~~~~~~~~~----------------~~~~~~~i~~~~~~~~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~ 154 (366)
T 3k26_A 98 RIINPITMQCIKH----------------YVGHGNAINELKFHPRDPNLLL-SVS------KDHALRLWNIQTDTLVAIF 154 (366)
T ss_dssp EEECTTTCCEEEE----------------EESCCSCEEEEEECSSCTTEEE-EEE------TTSCEEEEETTTTEEEEEE
T ss_pred EEEEchhceEeee----------------ecCCCCcEEEEEECCCCCCEEE-EEe------CCCeEEEEEeecCeEEEEe
Confidence 99863 2333222 225667889999999 999999 565 4689999999899998887
Q ss_pred ---ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EE-------------------------EEEecc
Q 000992 219 ---ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RS-------------------------SFDINE 269 (1196)
Q Consensus 219 ---e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~-------------------------~f~l~~ 269 (1196)
.+|.+.+.+++|+|+|++|++++.++ .|.+|+..... .. .+....
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp CSTTSCSSCEEEEEECTTSSEEEEEETTS------CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred cccccccCceeEEEECCCCCEEEEecCCC------CEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 67899999999999999999999864 69999965321 00 000111
Q ss_pred CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE------------EEEEEEEEecCCcEEEEEccC--CCceE
Q 000992 270 QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW------------YLKYEIRYLRRDGIRFMWHPT--KPLQL 335 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w------------ylkq~l~~~~~~~~~v~Wsp~--~~~~L 335 (1196)
.+...|.+++|+ |++|++++.|+ .|++|++.+..- .....+..+......+.|+|+ +. .|
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l 302 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCEN---AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-ML 302 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSS---EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EE
T ss_pred CCcceEEEEEEc--CCEEEEEecCC---EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EE
Confidence 145679999999 78999999999 999999876421 222333333333366778877 54 35
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cC--CCCEEEEEEecCCCCCEEEEEE
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KF--PTAVTEMAFYSKSSKNCLAAIL 412 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~--~~~V~~Vafspdg~~~~lAs~~ 412 (1196)
.+++.+|.+. +|++.......... ..+ .| ...|.+++|+|++ +.||+++
T Consensus 303 ~~~~~dg~i~-------------------------vwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~--~~l~s~~ 354 (366)
T 3k26_A 303 ALGNQVGKLY-------------------------VWDLEVEDPHKAKC-TTLTHHKCGAAIRQTSFSRDS--SILIAVC 354 (366)
T ss_dssp EEECTTSCEE-------------------------EEECCSSSGGGCEE-EEECCTTCCSCEEEEEECTTS--SEEEEEE
T ss_pred EEEecCCcEE-------------------------EEECCCCCCccccc-eEEcccccCCceEEEEeCCCC--CeEEEEe
Confidence 5555555543 33332211100011 122 23 6889999999999 8999999
Q ss_pred CCCcEEEEeCC
Q 000992 413 SDGCLCVVDLP 423 (1196)
Q Consensus 413 ~dg~v~lw~~~ 423 (1196)
.||+|++|++.
T Consensus 355 ~dg~i~iwd~~ 365 (366)
T 3k26_A 355 DDASIWRWDRL 365 (366)
T ss_dssp TTSEEEEEEC-
T ss_pred CCCEEEEEEec
Confidence 99999999975
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=260.05 Aligned_cols=254 Identities=13% Similarity=0.175 Sum_probs=193.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..||+ ..+... .+.+ +.+| .+.|.+++|+| +++.|++++.||+|
T Consensus 15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~--~~~~~~-~~~~----l~gH----~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 15 MIHDAQMDYYGTRLATCSSDRSVKIFDV--RNGGQI-LIAD----LRGH----EGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp CEEEEEECGGGCEEEEEETTTEEEEEEE--ETTEEE-EEEE----EECC----SSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eEEEeeEcCCCCEEEEEeCCCeEEEEEe--cCCCcE-EEEE----EcCC----CccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 7899999999999999999999999998 433211 1222 4555 36899999986 48999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
++||..++. ......|.+.|.+++|||| |.+||+++.|++|++|+..-..... ... .+.+|..
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~-~~~-----------~~~~h~~ 151 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE-VKK-----------INNAHTI 151 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE-ECC-----------BTTSSSS
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc-eee-----------eeccccC
Confidence 999998753 3344457889999999998 8899999999999998632110000 001 1225666
Q ss_pred CeEEEEEccC-----------------CceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEEcCCC
Q 000992 175 FKSPISWRGD-----------------GKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 175 ~v~~isWspD-----------------G~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slawsPdG 234 (1196)
.+.+++|+|+ |++|| +++ .|++|||||..++ ++..++++|.+.|.+++|+|+|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs------~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA-SGG------CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEE-CCB------TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred CcceEEEccccCCccccccccccCccccceEE-Eec------CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence 7889999998 47898 565 4799999998544 4667788899999999999997
Q ss_pred ----CeEEEEecCCCCCCCCeEEEEeCCCeeEEE---EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-C
Q 000992 235 ----ANIAAVYDRKSENKCPSIVFYERNGLERSS---FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-N 306 (1196)
Q Consensus 235 ----~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~---f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n 306 (1196)
++||+++.| .+|++|+......+. ..+.. +...|.+++|||||++||+++.|+ +|+||+.. .
T Consensus 225 ~~~~~~las~s~D------~~v~iw~~~~~~~~~~~~~~~~~-~~~~v~~v~~sp~g~~las~~~D~---~v~lw~~~~~ 294 (316)
T 3bg1_A 225 GLPTSTIASCSQD------GRVFIWTCDDASSNTWSPKLLHK-FNDVVWHVSWSITANILAVSGGDN---KVTLWKESVD 294 (316)
T ss_dssp SCSCCEEEEEETT------CEEEEEECSSTTCCCCBCCEEEE-CSSCEEEEEECTTTCCEEEEESSS---CEEEEEECTT
T ss_pred CCCCceEEEEcCC------CeEEEEEccCccccchhhhhhhc-CCCcEEEEEEcCCCCEEEEEcCCC---eEEEEEECCC
Confidence 899999986 479999864311000 01222 356899999999999999999999 99999976 5
Q ss_pred CEEEEEEEE
Q 000992 307 NHWYLKYEI 315 (1196)
Q Consensus 307 ~~wylkq~l 315 (1196)
.+|....++
T Consensus 295 g~~~~~~~~ 303 (316)
T 3bg1_A 295 GQWVCISDV 303 (316)
T ss_dssp SCEEEEEEC
T ss_pred CcEEEeeec
Confidence 677554443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=262.58 Aligned_cols=315 Identities=13% Similarity=0.134 Sum_probs=207.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe------------EEEeeeec------------CcEEEEEECCCC--
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA------------TEVVGRVE------------GGVRFISPSPDG-- 128 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~------------~e~vg~~~------------~~I~~~awSPDg-- 128 (1196)
.+.|.+++|+|+|+.||+|+.||.|++|+..++. ...+..|. +.|.+++|+|++
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 4789999999999999999999999999998754 33444566 889999999999
Q ss_pred CEEEEEeCCceEEEEeccCceeeeeeccccc-Cc-----cccc------------------cCc-cccCCCCeEEEEEcc
Q 000992 129 DLLGVTTGFGQILVMTHDWDLLYENPLEELA-EG-----FDVH------------------EPE-LSSSFSFKSPISWRG 183 (1196)
Q Consensus 129 ~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~-~~-----~~Vs------------------~tq-f~~~~~~v~~isWsp 183 (1196)
..|++++.|++|++|+..-............ .+ ..++ ... ..+|...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 8999999999999986321111000000000 00 0000 001 247888999999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECC-CCcEEEE-------eccCCCceeEEEEcCCC-CeEEEEecCCCCCCCCeEEE
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQAS-------SELKAFMGAVLEWMPSG-ANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~-------~e~~~~~v~slawsPdG-~~IAs~s~d~~~~~~~~V~~ 254 (1196)
||++|| ++. |++|+|||.. .++.... ..+|.+.+.+++|+|+| ++||+++.|+ .|++
T Consensus 188 ~~~~l~-s~~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg------~i~i 253 (447)
T 3dw8_B 188 DYETYL-SAD-------DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG------TIRL 253 (447)
T ss_dssp TSSEEE-EEC-------SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS------CEEE
T ss_pred CCCEEE-EeC-------CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC------eEEE
Confidence 999999 552 5899999996 3445542 45788899999999999 9999999864 6999
Q ss_pred EeCC-Cee----EEEEEeccCCC-----------CcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CEEEEEEEEEE
Q 000992 255 YERN-GLE----RSSFDINEQID-----------STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIRY 317 (1196)
Q Consensus 255 ~e~n-Gl~----~~~f~l~~~~~-----------~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~l~~ 317 (1196)
|+.. +.. ... +..+.. ..|.+++|+|||++||+++. + +|++|++.+ ... .+.+..
T Consensus 254 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~---~v~iwd~~~~~~~--~~~~~~ 325 (447)
T 3dw8_B 254 CDMRASALCDRHSKL--FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L---SVKVWDLNMENRP--VETYQV 325 (447)
T ss_dssp EETTTCSSSCTTCEE--ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S---EEEEEETTCCSSC--SCCEES
T ss_pred EECcCCccccceeeE--eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C---eEEEEeCCCCccc--cceeec
Confidence 9953 332 122 232211 27999999999999999988 7 899999975 331 123333
Q ss_pred ecCC---------------cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCE--EE----Eee---
Q 000992 318 LRRD---------------GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSK--IL----VTP--- 373 (1196)
Q Consensus 318 ~~~~---------------~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~--l~----lt~--- 373 (1196)
+... ...+.|+|++.. |+.++.+|.+. .|++. . +......+.. .+ ..+
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~----iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 397 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFR----MFDRN--T-KRDITLEASRENNKPRTVLKPRKV 397 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEE----EEETT--T-CCEEEEECCSTTCCTTCBCCCCCE
T ss_pred cccccccccccccccccccceEEEECCCCCE-EEEeccCCEEE----EEEcC--C-CcceeeeecccccccccccCCccc
Confidence 2210 123899999875 67777788775 44442 1 1111111100 00 000
Q ss_pred -ccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 374 -LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 374 -l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
......+.......+.+...|.+++|+|++ +.||+++.|+ +.+|..
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~--~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 398 CASGKRKKDEISVDSLDFNKKILHTAWHPKE--NIIAVATTNN-LYIFQD 444 (447)
T ss_dssp ECSSCCCTTCEEGGGCCTTSCCCEEEECSSS--SEEEEECSSC-EEEEEC
T ss_pred cccCCcccccccccccccCCceeEEEECCCC--CEEEEEecce-eeeecc
Confidence 000001111222234567789999999999 8999997775 777764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-25 Score=276.21 Aligned_cols=302 Identities=15% Similarity=0.151 Sum_probs=215.3
Q ss_pred eeeecCcEEEEEECCCC-CEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+..|.+.|++++|+|++ ++||+++.|++|++|+..-+ ....... ..+.+|...|.+++|+|||++|+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~-----------~~~~~h~~~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ-----------RRLTGHSHFVEDVVLSSDGQFAL 446 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEE-----------EEEECCSSCEEEEEECTTSSEEE
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccc-----------ceecCCCCcEEEEEECCCCCEEE
Confidence 44579999999999985 79999999999999964211 1111111 12347788899999999999999
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN- 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~- 268 (1196)
+++ .|++|||||..+|+....+.+|.+.|.+++|+|+|++|++++.|+ +|++|+..+.....+...
T Consensus 447 -sgs------~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~~ 513 (694)
T 3dm0_A 447 -SGS------WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR------TIKLWNTLGECKYTISEGG 513 (694)
T ss_dssp -EEE------TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS------CEEEECTTSCEEEEECSST
T ss_pred -EEe------CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC------EEEEEECCCCcceeeccCC
Confidence 565 469999999989999999999999999999999999999999974 699999766443222111
Q ss_pred cCCCCcEEEEEEccCC--CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 269 EQIDSTVELLKWNCMS--DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 269 ~~~~~~V~~laWSpDg--~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
..+...|.+++|+|++ ..|++++.|+ +|++|++.+.. +...+..|.....++.|+|++.. |..++.+|.+.
T Consensus 514 ~~h~~~v~~~~~~~~~~~~~l~s~s~d~---~v~vwd~~~~~--~~~~~~~h~~~v~~v~~spdg~~-l~sg~~Dg~i~- 586 (694)
T 3dm0_A 514 EGHRDWVSCVRFSPNTLQPTIVSASWDK---TVKVWNLSNCK--LRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVL- 586 (694)
T ss_dssp TSCSSCEEEEEECSCSSSCEEEEEETTS---CEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSE-EEEEETTSBCE-
T ss_pred CCCCCcEEEEEEeCCCCcceEEEEeCCC---eEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCE-EEEEeCCCeEE-
Confidence 2345679999999998 5799999999 99999998764 23444444444488999998864 66666666554
Q ss_pred EEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 347 YNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 347 ~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
.|+ ++.. .+.+++.+...|.+++|||++ ..|+++ .|+.|++|++.+..
T Consensus 587 ---iwd---------------------~~~~-----~~~~~~~~~~~v~~~~~sp~~--~~l~~~-~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 587 ---LWD---------------------LAEG-----KKLYSLEANSVIHALCFSPNR--YWLCAA-TEHGIKIWDLESKS 634 (694)
T ss_dssp ---EEE---------------------TTTT-----EEEECCBCSSCEEEEEECSSS--SEEEEE-ETTEEEEEETTTTE
T ss_pred ---EEE---------------------CCCC-----ceEEEecCCCcEEEEEEcCCC--cEEEEE-cCCCEEEEECCCCC
Confidence 233 2211 112334456779999999998 677766 56679999998754
Q ss_pred ccccccCCceeeee-ec---c---cccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 427 MLEDLEGTEFVVEA-CI---S---ETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 427 ~~~~~~g~~~~~~~-~~---~---~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
....+..+...... .. . ..+...+.+++|+|||.+|++++.+ ..+.+|.+
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D--g~i~iW~i 691 (694)
T 3dm0_A 635 IVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD--GVIRVWGI 691 (694)
T ss_dssp EEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETT--SEEEEEEC
T ss_pred ChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCC--CeEEEEec
Confidence 44333221100000 00 0 0111247899999999999998876 68889986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=255.54 Aligned_cols=303 Identities=11% Similarity=0.058 Sum_probs=209.6
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-------EEEeeeecCcEEEEEECCC----C---CEEEEEeCCceE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGGVRFISPSPD----G---DLLGVTTGFGQI 140 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~I~~~awSPD----g---~~LA~~s~d~tV 140 (1196)
.+.|.+++|+| +.|++++.||+|++|+..++. +..+..|...|.+++|+|| | ++||+++.|++|
T Consensus 16 ~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 46899999999 899999999999999998865 5555567899999999999 9 999999999999
Q ss_pred EEEecc-CceeeeeecccccCccccccCccccC-----CCCeEEEEEc----cCCce-EEEeeccccccCCCCEEEEEEC
Q 000992 141 LVMTHD-WDLLYENPLEELAEGFDVHEPELSSS-----FSFKSPISWR----GDGKY-FATLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 141 ~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~-----~~~v~~isWs----pDG~~-lAsvss~d~~~~~d~~irVWd~ 209 (1196)
.+|+.. ........+.. +..| ...+.+++|+ |||++ |+ +++ .++.|++||.
T Consensus 94 ~iw~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~~~------~dg~i~iwd~ 155 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEK-----------LDLLDSDMKKHSFWALKWGASNDRLLSHRLV-ATD------VKGTTYIWKF 155 (397)
T ss_dssp EEEEEEECTTTCCEEEEE-----------ECCSCTTGGGSCEEEEEEECCC----CEEEE-EEE------TTSCEEEEEE
T ss_pred EEEEccCCccccccccee-----------ecccccccCCCcEEEEEEeeccCCCCceEEE-EEe------CCCcEEEEeC
Confidence 998632 11100000111 1133 3678999999 99999 98 565 4689999998
Q ss_pred CC------CcEEE-----Ee-------ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccC
Q 000992 210 DS------GTLQA-----SS-------ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQ 270 (1196)
Q Consensus 210 ~~------G~l~~-----~~-------e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~ 270 (1196)
.+ ++... .+ ..+...+.+++|+|+| +|++++.+ ..|.+|+.. +.....+.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN------GTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT------SEEEEEETTTTEEEEEEECCC-
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC------CcEEEEECCCCceeEEEecccc
Confidence 66 55554 44 4477889999999999 99999875 479999964 444333322000
Q ss_pred C---CCcEEEEEEccCCCeeEEEEcc---CCcceEEEEEecCCEEEEEEEEEE-------------ecCCcEEEEEccCC
Q 000992 271 I---DSTVELLKWNCMSDLLAAVVRF---EEYDSVKICFFSNNHWYLKYEIRY-------------LRRDGIRFMWHPTK 331 (1196)
Q Consensus 271 ~---~~~V~~laWSpDg~~LAs~~~d---~~~~~V~lW~~~n~~wylkq~l~~-------------~~~~~~~v~Wsp~~ 331 (1196)
+ ...|.+++|+|||++||+++.| + .|++|++.+... ...+.. +......+.|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g---~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFG---CITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEE---EEEEEETTTCCE--EEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCc---eEEEEECCCCcc--cceeccCcccccccccccccCCcEEEEEECCCC
Confidence 2 5679999999999999999999 7 899999987642 233433 33334889999988
Q ss_pred CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccC------CCCCceeeeecCCCCEEEEEEecCCC-
Q 000992 332 PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSL------MPPPMYLFSLKFPTAVTEMAFYSKSS- 404 (1196)
Q Consensus 332 ~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~------vpppm~~~~l~~~~~V~~Vafspdg~- 404 (1196)
.. |.+++.+|.+. +|++. . +..+......... .+.......-.|...|.+++|+|+|.
T Consensus 304 ~~-l~~~~~dg~i~----iwd~~--~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~ 368 (397)
T 1sq9_A 304 ET-LCSAGWDGKLR----FWDVK--T--------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 368 (397)
T ss_dssp SE-EEEEETTSEEE----EEETT--T--------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred CE-EEEEeCCCeEE----EEEcC--C--------CceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence 65 77777777665 34432 1 1111111100000 00000000001378999999999971
Q ss_pred -------CCEEEEEECCCcEEEEeCCC
Q 000992 405 -------KNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 405 -------~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.+.|++++.||+|++|++.+
T Consensus 369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 369 SGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp BSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ccccccccceEEEecCCCcEEEEEcCC
Confidence 14899999999999999864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-25 Score=248.32 Aligned_cols=295 Identities=12% Similarity=0.056 Sum_probs=191.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCC-----eEEEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEeccC
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-----ATEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHDW 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-----~~e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~~ 147 (1196)
.+.|.+++|+|+++.|++++.||+|++||..++ ....+..|.+.|.+++|+| ||++||+++.|++|++|+..-
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~ 90 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDP 90 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence 368999999999999999999999999999864 2234455789999999999 799999999999999987432
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEec------
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE------ 219 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e------ 219 (1196)
..... .....+.+ ..+.+|...+.+++|+|+ |++|+ +++ .+++|+|||..+++......
T Consensus 91 ~~~~~----~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~-~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 91 DQEEC----SGRRWNKL--CTLNDSKGSLYSVKFAPAHLGLKLA-CLG------NDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp TSCTT----SSCSEEEE--EEECCCSSCEEEEEECCGGGCSEEE-EEE------TTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred Ccccc----cccCccee--eeecccCCceeEEEEcCCCCCcEEE-Eec------CCCcEEEecCCChHHhcccccccccc
Confidence 10000 00000000 123356778999999999 99999 565 46899999987776443221
Q ss_pred -------cCCCceeEEEEcCC---CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCC----
Q 000992 220 -------LKAFMGAVLEWMPS---GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMS---- 284 (1196)
Q Consensus 220 -------~~~~~v~slawsPd---G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg---- 284 (1196)
++...+.+++|+|+ ++++|+++.+. .+.+|... +.......+.. +...|.+++|+|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ------AIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE------EEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSS
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCC------cEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcc
Confidence 46677899999998 99999999863 46666543 33222223333 45689999999999
Q ss_pred CeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 285 DLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 285 ~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
++||+++.|+ +|++|++.+... ....... ......+++.... ... +.
T Consensus 231 ~~l~s~~~dg---~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~--~~------------------- 279 (351)
T 3f3f_A 231 QLIATGCKDG---RIRIFKITEKLS----PLASEESLTNSNMFDNSADVDM---DAQ--GR------------------- 279 (351)
T ss_dssp EEEEEEETTS---CEEEEEEEECC--------------------------------------------------------
T ss_pred eEEEEEcCCC---eEEEEeCCCCcC----ccccCCcccceeccCCCccccc---ccc--cc-------------------
Confidence 8999999999 999999876421 1111000 0011111111110 000 00
Q ss_pred EEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.++...... ..+...++.....+ .|...|++++|+|++ +.||+++.||+|++|++.+.
T Consensus 280 -~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 280 -SDSNTEEKA--ELQSNLQVELLSEHDDHNGEVWSVSWNLTG--TILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSS--CCEEEEETTSCEEEEEECTT
T ss_pred -cccccceee--eecccccccEEEEEecccccEEEEEEcCCC--CEEEEecCCCcEEEEecCcC
Confidence 000000000 00111111122333 378899999999999 89999999999999999864
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-23 Score=249.57 Aligned_cols=309 Identities=11% Similarity=0.052 Sum_probs=217.3
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cceeeeeec
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPL 155 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l 155 (1196)
+.++.| +++.|++|+.||+|++||..+++.. ....|.++|.+++|+||+ .|++++.||+|++|+.. ...+.
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---- 197 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---- 197 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE----
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE----
Confidence 455555 6789999999999999999887653 555679999999999998 99999999999998732 22221
Q ss_pred ccccCccccccCccccCCCCeEEEEEc--cCCceEEEeeccccccCCCCEEEEEECCCCcE-------------------
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWR--GDGKYFATLSEFCNSSKLHKRLKVWERDSGTL------------------- 214 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWs--pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l------------------- 214 (1196)
.|.+|.+.+.+++|+ +||.+|+ +++ .|++|++||..++..
T Consensus 198 ------------~~~~h~~~v~~l~~~~~~~~~~l~-s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 198 ------------VFEGHNSTVRCLDIVEYKNIKYIV-TGS------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp ------------EECCCSSCEEEEEEEESSSCEEEE-EEE------TTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred ------------EECCCCCccEEEEEecCCCCCEEE-EEc------CCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 123566788999998 6889999 565 468999999976652
Q ss_pred ----EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 215 ----QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 215 ----~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
.....+|...+.++ +|+|++|++++.|+ .|++|+.. +.... .+.. +...|.+++|+|||+.|++
T Consensus 259 ~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~------~i~vwd~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~s 327 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN------TLIVWDVAQMKCLY--ILSG-HTDRIYSTIYDHERKRCIS 327 (464)
T ss_dssp CTTEEEEECCCSSCEEEE--EEETTEEEEEETTS------CEEEEETTTTEEEE--EECC-CSSCEEEEEEETTTTEEEE
T ss_pred CeEEEEEccCccceEEEE--cCCCCEEEEEeCCC------eEEEEECCCCcEEE--EecC-CCCCEEEEEEcCCCCEEEE
Confidence 44566677766655 79999999999864 69999964 43332 2333 3568999999999999999
Q ss_pred EEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 290 VVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
++.|+ +|++|++.+.. ..+.+..+......+.|++ ..|..++.+|.+
T Consensus 328 g~~dg---~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v------------------------- 374 (464)
T 3v7d_B 328 ASMDT---TIRIWDLENGE--LMYTLQGHTALVGLLRLSD---KFLVSAAADGSI------------------------- 374 (464)
T ss_dssp EETTS---CEEEEETTTTE--EEEEECCCSSCEEEEEECS---SEEEEEETTSEE-------------------------
T ss_pred EeCCC---cEEEEECCCCc--EEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcE-------------------------
Confidence 99999 99999998765 2334443333336677763 335555555543
Q ss_pred EEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCc
Q 000992 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGS 449 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (1196)
++|++.. +.......+...+..++|+|++ +.+++++ ||+|++|++.+........ ..+...
T Consensus 375 ~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~-dg~i~iwd~~~g~~~~~~~-----------~~~~~~ 435 (464)
T 3v7d_B 375 RGWDAND-----YSRKFSYHHTNLSAITTFYVSD--NILVSGS-ENQFNIYNLRSGKLVHANI-----------LKDADQ 435 (464)
T ss_dssp EEEETTT-----CCEEEEEECTTCCCEEEEEECS--SEEEEEE-TTEEEEEETTTCCEEESCT-----------TTTCSE
T ss_pred EEEECCC-----CceeeeecCCCCccEEEEEeCC--CEEEEec-CCeEEEEECCCCcEEehhh-----------ccCCCc
Confidence 4444332 1112233456677889999999 8999987 9999999998754442110 123458
Q ss_pred EEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 450 VIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 450 v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+..++|+ ++.+++++.++ ..+.++.+
T Consensus 436 v~~v~~~-~~~l~~~~~~~--g~~~i~~l 461 (464)
T 3v7d_B 436 IWSVNFK-GKTLVAAVEKD--GQSFLEIL 461 (464)
T ss_dssp EEEEEEE-TTEEEEEEEET--TEEEEEEE
T ss_pred EEEEEec-CCEEEEEEEeC--CeEEEEEe
Confidence 9999998 44555555543 33444444
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-25 Score=255.70 Aligned_cols=202 Identities=11% Similarity=0.026 Sum_probs=154.9
Q ss_pred CCCEEEEEEccCCCEEEEEE--CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGT--SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as--~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~ 151 (1196)
.+.+..++|||||+.||+|+ .||+|+|||..+++.. .++ |.+.|.+++|||||++||+++.++.+++|......+.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA 211 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence 45799999999999998776 6799999999987664 444 5788999999999999999997766655544433322
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE----EEEeccCCCceeE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAFMGAV 227 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l----~~~~e~~~~~v~s 227 (1196)
.... .+|...+.+++|+|||++++ +++.+.. ...++++|+...+.. .....++...|.+
T Consensus 212 ~~~~--------------~~~~~~v~~v~fspdg~~l~-~~s~d~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 212 RKTD--------------FDKNWSLSKINFIADDTVLI-AASLKKG--KGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp EECC--------------CCTTEEEEEEEEEETTEEEE-EEEESSS--CCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred eeec--------------CCCCCCEEEEEEcCCCCEEE-EEecCCc--ceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 2111 13455679999999999999 5654321 223789999755543 2345678888999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++|||||++||+|+.|. .|++|+. +|.... .+...|...|.+|+|||||++||+++.|+ +|+||++.
T Consensus 275 ~~~Spdg~~lasgs~D~------~V~iwd~~~~~~~~--~~~~gH~~~V~~v~fSpdg~~laS~S~D~---tvrvw~ip 342 (365)
T 4h5i_A 275 MDVDMKGELAVLASNDN------SIALVKLKDLSMSK--IFKQAHSFAITEVTISPDSTYVASVSAAN---TIHIIKLP 342 (365)
T ss_dssp EEECTTSCEEEEEETTS------CEEEEETTTTEEEE--EETTSSSSCEEEEEECTTSCEEEEEETTS---EEEEEECC
T ss_pred EEECCCCCceEEEcCCC------EEEEEECCCCcEEE--EecCcccCCEEEEEECCCCCEEEEEeCCC---eEEEEEcC
Confidence 99999999999999874 5999995 444333 22223467899999999999999999999 99999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-24 Score=253.23 Aligned_cols=277 Identities=13% Similarity=0.137 Sum_probs=198.6
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Ee--eeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
++..|+||++ +.||+|. |++|+|||..++++. .. ..|.+.|++++|||||++||+|+.|++|++|+. ....+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 5777999986 5888876 999999999998654 22 345677999999999999999999999999873 2222222
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slaws 231 (1196)
+.+|...+.+++| |+.+|+ +++ .++++++||... .....++.+|...+..+.|+
T Consensus 185 ----------------~~~h~~~v~~~s~--~~~~l~-sgs------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 185 ----------------MTSHSARVGSLSW--NSYILS-SGS------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp ----------------ECCCSSCEEEEEE--ETTEEE-EEE------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred ----------------EeCCCCceEEEee--CCCEEE-EEe------CCCceeEeeecccceeeEEecccccceeeeeec
Confidence 2255667788777 567888 565 468999999854 45566778899999999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEE-EEeccCCCCcEEEEEEccCCC-eeEEEE--ccCCcceEEEEEecC
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSS-FDINEQIDSTVELLKWNCMSD-LLAAVV--RFEEYDSVKICFFSN 306 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~-f~l~~~~~~~V~~laWSpDg~-~LAs~~--~d~~~~~V~lW~~~n 306 (1196)
|+|+++++++.|+ .|.+|+.. |..... ......+...|..++|+|++. +||+++ .|+ +|++|++.+
T Consensus 240 ~~g~~l~s~~~D~------~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t 310 (420)
T 4gga_A 240 PDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCS 310 (420)
T ss_dssp TTSSEEEEEETTS------CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTT
T ss_pred CCCCeeeeeeccc------cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCc
Confidence 9999999999864 59999853 211100 001123456799999999765 555543 567 999999998
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEe--cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
... ...+.. ......+.|+|++.. +.+.+ .+|. |++|++.. ...
T Consensus 311 ~~~--~~~~~~-~~~v~~~~~~~~~~~-lv~~sg~~d~~-------------------------I~iwd~~~-----~~~ 356 (420)
T 4gga_A 311 GAC--LSAVDA-HSQVCSILWSPHYKE-LISGHGFAQNQ-------------------------LVIWKYPT-----MAK 356 (420)
T ss_dssp TEE--EEEEEC-SSCEEEEEEETTTTE-EEEEECTTTCC-------------------------EEEEETTT-----CCE
T ss_pred ccc--ceeecc-ccceeeeeecCCCCe-EEEEEecCCCE-------------------------EEEEECCC-----CcE
Confidence 753 222322 123377889998875 44433 2333 33443321 112
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..++ .|.+.|++|+||||| ++||+++.|++|+||++...
T Consensus 357 v~~l~gH~~~V~~l~~spdg--~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 357 VAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSCS
T ss_pred EEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCCC
Confidence 2344 488999999999999 89999999999999998754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-24 Score=248.18 Aligned_cols=285 Identities=14% Similarity=0.017 Sum_probs=211.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc--c-eeeccccccccccCCCCCCEEEEEEccC----C---CEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA--S-IKTAISAEIEHIDLEPGDSITAFDYLME----K---EALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~v~~v~~spd----~---~~La 91 (1196)
.+.+++|++ +.|++++.|+.|..|+. ..++.. . .+.+ +..+ ...|.+++|+|+ + +.|+
T Consensus 18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~--~~~~~~~~~~~~~~----~~~h----~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 18 DIFSVSACN--SFTVSCSGDGYLKVWDN--KLLDNENPKDKSYS----HFVH----KSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp CEEEEEECS--SEEEEEETTSEEEEEES--BCCTTCCGGGGEEE----EECC----TTCEEEEEEEEEEETTTEEEEEEE
T ss_pred CeEEEEecC--CeEEEEcCCCEEEEEEC--CCcccccCCCcceE----EecC----CCcEEEEEEecccccCCccccEEE
Confidence 789999988 89999999999999999 444310 0 0111 3333 468999999999 9 9999
Q ss_pred EEECCCcEEEEECCCCe------EEEeeee-----cCcEEEEEEC----CCCCE-EEEEeCCceEEEEeccC-------c
Q 000992 92 VGTSSGLLLLHSVDGNA------TEVVGRV-----EGGVRFISPS----PDGDL-LGVTTGFGQILVMTHDW-------D 148 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~------~e~vg~~-----~~~I~~~awS----PDg~~-LA~~s~d~tV~l~~~~~-------d 148 (1196)
+++.||+|++|+..++. +.....| .+.|.+++|+ |||+. |++++.|++|.+|+..- .
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 99999999999998755 5555556 5899999999 99999 99999999999986321 1
Q ss_pred eeeeeecccccCccccccCcc-------ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-
Q 000992 149 LLYENPLEELAEGFDVHEPEL-------SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL- 220 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf-------~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~- 220 (1196)
.+. +.+. ..+ ..|...+.+++|+||| +|+ +++ .++.|+|||..+++....+..
T Consensus 166 ~~~---~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~ 226 (397)
T 1sq9_A 166 TLN---WSPT--------LELQGTVESPMTPSQFATSVDISERG-LIA-TGF------NNGTVQISELSTLRPLYNFESQ 226 (397)
T ss_dssp TTC---CCCE--------EEEEEEECCSSSSCCCCCEEEECTTS-EEE-EEC------TTSEEEEEETTTTEEEEEEECC
T ss_pred eee---ccCc--------ceeeeeeccccCCCCCceEEEECCCc-eEE-EEe------CCCcEEEEECCCCceeEEEecc
Confidence 111 0000 011 2356778999999999 888 565 468999999988999999888
Q ss_pred --C---CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccC------------CCCcEEEEEEcc
Q 000992 221 --K---AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQ------------IDSTVELLKWNC 282 (1196)
Q Consensus 221 --~---~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~------------~~~~V~~laWSp 282 (1196)
| .+.+.+++|+|+|++||+++.+.. ...|.+|+. ++..... +..+ +...|.+++|+|
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNS---FGCITLYETEFGERIGS--LSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEE--ECBC--------CCBSBSSCEEEEEECS
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCC---CceEEEEECCCCcccce--eccCcccccccccccccCCcEEEEEECC
Confidence 8 889999999999999999988510 146999995 4544433 3321 456899999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE------Ee---------------cCCcEEEEEccCCC---------
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR------YL---------------RRDGIRFMWHPTKP--------- 332 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~------~~---------------~~~~~~v~Wsp~~~--------- 332 (1196)
||++||+++.|+ +|++|++.+... ...+. .+ ......+.|+|++.
T Consensus 302 ~~~~l~~~~~dg---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 302 SGETLCSAGWDG---KLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp SSSEEEEEETTS---EEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred CCCEEEEEeCCC---eEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 999999999999 999999988653 34444 22 23348899999973
Q ss_pred ceEEEEecCCcEEEE
Q 000992 333 LQLICWTLDGQITTY 347 (1196)
Q Consensus 333 ~~L~~~~~~g~~~~~ 347 (1196)
..|..++.+|.+.++
T Consensus 377 ~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWF 391 (397)
T ss_dssp CEEEEEETTTEEEEE
T ss_pred ceEEEecCCCcEEEE
Confidence 457777777776543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=252.41 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=200.4
Q ss_pred ceeEEeeecCC-CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQ-NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~-~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I 99 (1196)
.+.+++|.+++ ..|++++.|+.|..|+. ..+.....+. +.++ .+.|.+++|+| +++.|++++.||+|
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~-----~~~h----~~~v~~~~~~~~~~~~l~s~~~d~~i 143 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDY--DVQNKTSFIQ-----GMGP----GDAITGMKFNQFNTNQLFVSSIRGAT 143 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEET--TSTTCEEEEC-----CCST----TCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeC--CCcccceeee-----cCCc----CCceeEEEeCCCCCCEEEEEeCCCEE
Confidence 78999999998 89999999999999999 4443321111 1122 46899999999 78999999999999
Q ss_pred EEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
++||..++.+..... +...|.+++|||||+.||+++.|++|.+|+....++... .+|...+
T Consensus 144 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------~~h~~~v 207 (383)
T 3ei3_B 144 TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKE----------------KLHKAKV 207 (383)
T ss_dssp EEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEE----------------ECSSSCE
T ss_pred EEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEe----------------ccCCCcE
Confidence 999999876654332 247799999999999999999999999997644333222 2456788
Q ss_pred EEEEEccCCc-eEEEeeccccccCCCCEEEEEECCC----CcEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCC
Q 000992 177 SPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDS----GTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 177 ~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~----G~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~ 250 (1196)
.+++|+|||+ +|+ +++ .|++|+|||..+ +.+.... +|.+.+.+++|+| +|++||+++.| .
T Consensus 208 ~~~~~~~~~~~~l~-s~~------~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d------~ 273 (383)
T 3ei3_B 208 THAEFNPRCDWLMA-TSS------VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQR------N 273 (383)
T ss_dssp EEEEECSSCTTEEE-EEE------TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESS------S
T ss_pred EEEEECCCCCCEEE-EEe------CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCC------C
Confidence 9999999999 788 565 478999999976 6777776 5888999999999 99999999986 4
Q ss_pred eEEEEeCC-CeeEEEEEecc----CC----------CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 251 SIVFYERN-GLERSSFDINE----QI----------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 251 ~V~~~e~n-Gl~~~~f~l~~----~~----------~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
.|++|+.. +.....+.... .+ ...+..++|+|||++ +++.|+ +|++|++.+... .+.+
T Consensus 274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~---~i~iwd~~~~~~--~~~l 346 (383)
T 3ei3_B 274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKR---TIDIYDANSGGL--VHQL 346 (383)
T ss_dssp EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCC---CEEEEETTTCCE--EEEE
T ss_pred cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCC---eEEEEecCCCce--eeee
Confidence 79999954 33222222110 01 123444566666655 555677 899999987653 3444
Q ss_pred EEec-CCc-EEEEEccCCCceEEEEecCCcEE
Q 000992 316 RYLR-RDG-IRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 316 ~~~~-~~~-~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
..+. ... ..+.|+|++.. |..++ +|.+.
T Consensus 347 ~~~~~~~~~~~~~~s~~g~~-l~s~s-d~~i~ 376 (383)
T 3ei3_B 347 RDPNAAGIISLNKFSPTGDV-LASGM-GFNIL 376 (383)
T ss_dssp CBTTBCSCCCEEEECTTSSE-EEEEE-TTEEE
T ss_pred cCCCCCceEEEEEEecCccE-EEEec-CCcEE
Confidence 4322 233 55699998875 55554 66654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=250.33 Aligned_cols=255 Identities=13% Similarity=0.123 Sum_probs=180.7
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc--CCceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--DGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lA 189 (1196)
...|.+.|++++|||||++||+++.|++|++|+..-.. ...+. .+.+|.+.|.+++|+| +|++||
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~--~~~~~-----------~l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG--QILIA-----------DLRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE--EEEEE-----------EEECCSSCEEEEEECCGGGSSCEE
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC--cEEEE-----------EEcCCCccEEEEEeCCCCCCCEEE
Confidence 33478999999999999999999999999998632110 01111 2336778899999986 499999
Q ss_pred EeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
+++ .|++|+|||..+|+ ...++.+|.+.+.+++|+|+ |.+||+++.|+ .|++|+..+...-..
T Consensus 76 -s~s------~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~------~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 76 -SCS------YDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG------AISLLTYTGEGQWEV 142 (316)
T ss_dssp -EEE------TTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS------CEEEEEECSSSCEEE
T ss_pred -EEE------CCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC------CEEEEecCCCCCcce
Confidence 565 46999999997774 56677789999999999998 88999999874 699999654211110
Q ss_pred -EeccCCCCcEEEEEEccC-----------------CCeeEEEEccCCcceEEEEEecC-CEEEEEEEEEEecCCcEEEE
Q 000992 266 -DINEQIDSTVELLKWNCM-----------------SDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 266 -~l~~~~~~~V~~laWSpD-----------------g~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~l~~~~~~~~~v~ 326 (1196)
.....+...|..++|+|+ +++||+++.|+ +|+||+... ..|...+.+..|......+.
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN---LIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS---BCCEEEECTTSCEEEEECCBCCSSCEEEEE
T ss_pred eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC---eEEEEEeCCCCccceeeecccCCCceEEEE
Confidence 111234567999999998 57999999999 999999863 34544455555444458899
Q ss_pred EccCCC---ceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecC
Q 000992 327 WHPTKP---LQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSK 402 (1196)
Q Consensus 327 Wsp~~~---~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspd 402 (1196)
|+|++. ..|+.++.||. +++|.+....... .....+ .|.+.|++|+|+|+
T Consensus 220 ~sp~~~~~~~~las~s~D~~-------------------------v~iw~~~~~~~~~-~~~~~~~~~~~~v~~v~~sp~ 273 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGR-------------------------VFIWTCDDASSNT-WSPKLLHKFNDVVWHVSWSIT 273 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCE-------------------------EEEEECSSTTCCC-CBCCEEEECSSCEEEEEECTT
T ss_pred ecCCCCCCCceEEEEcCCCe-------------------------EEEEEccCccccc-hhhhhhhcCCCcEEEEEEcCC
Confidence 999862 34555555554 4444433210000 000112 47889999999999
Q ss_pred CCCCEEEEEECCCcEEEEeCC
Q 000992 403 SSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 403 g~~~~lAs~~~dg~v~lw~~~ 423 (1196)
| +.||+++.||+|++|+..
T Consensus 274 g--~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 274 A--NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp T--CCEEEEESSSCEEEEEEC
T ss_pred C--CEEEEEcCCCeEEEEEEC
Confidence 9 899999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-24 Score=250.22 Aligned_cols=278 Identities=12% Similarity=0.139 Sum_probs=201.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-Cceeeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYEN 153 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~ 153 (1196)
.+.+++|++ +.+++++.||+|++||..+++.. ....|.+.|.+++|||||++||+++.||+|.+|+.. ...+..
T Consensus 95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~- 171 (401)
T 4aez_A 95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT- 171 (401)
T ss_dssp TCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE-
T ss_pred eEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE-
Confidence 466688886 45778889999999999987654 233367889999999999999999999999998732 222222
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsP 232 (1196)
+.+|...+.+++| ++.+|+ +++ .+++|++||.. .+.......+|.+.+.+++|+|
T Consensus 172 ---------------~~~~~~~v~~~~~--~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 172 ---------------MAGHQARVGCLSW--NRHVLS-SGS------RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp ---------------ECCCSSCEEEEEE--ETTEEE-EEE------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred ---------------ecCCCCceEEEEE--CCCEEE-EEc------CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 2256678899999 567888 565 46999999996 4677788888999999999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCe-eEEEE--ccCCcceEEEEEecCCE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDL-LAAVV--RFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~-LAs~~--~d~~~~~V~lW~~~n~~ 308 (1196)
+|++||+++.|+ .|++|+... ... +.+. .+...|.+++|+|+|.. +++++ .|+ +|++|++.+..
T Consensus 228 ~~~~l~s~~~d~------~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~---~i~i~d~~~~~ 295 (401)
T 4aez_A 228 DGLQLASGGNDN------VVQIWDARSSIPK--FTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDK---QIHFWNAATGA 295 (401)
T ss_dssp TSSEEEEEETTS------CEEEEETTCSSEE--EEEC-CCSSCCCEEEECTTSTTEEEEECCTTTC---EEEEEETTTCC
T ss_pred CCCEEEEEeCCC------eEEEccCCCCCcc--EEec-CCcceEEEEEECCCCCCEEEEecCCCCC---EEEEEECCCCC
Confidence 999999999864 699999653 222 2233 24567999999998865 45443 577 89999998765
Q ss_pred EEEEEEEEEecCCcEEEEEccCCCceEEEEe--cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 309 WYLKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
. ...+. +......+.|+|++.. +.+.+ .+|.+.++ +.. .+....+ .
T Consensus 296 ~--~~~~~-~~~~v~~~~~s~~~~~-l~~~~g~~dg~i~v~----~~~----------~~~~~~~--------------~ 343 (401)
T 4aez_A 296 R--VNTVD-AGSQVTSLIWSPHSKE-IMSTHGFPDNNLSIW----SYS----------SSGLTKQ--------------V 343 (401)
T ss_dssp E--EEEEE-CSSCEEEEEECSSSSE-EEEEECTTTCEEEEE----EEE----------TTEEEEE--------------E
T ss_pred E--EEEEe-CCCcEEEEEECCCCCe-EEEEeecCCCcEEEE----ecC----------CccceeE--------------E
Confidence 3 22332 1223388999999875 44533 45655433 221 1111111 1
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
.+ .|...|.+++|+|+| +.|++++.||+|++|++.+...
T Consensus 344 ~~~~h~~~v~~~~~s~dg--~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDG--RILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECCSSCCCEEEECTTS--SEEEEECTTSEEEEEECCC---
T ss_pred EecCCCCCEEEEEECCCC--CEEEEEeCCCcEEEEECCCCcc
Confidence 12 377889999999999 8999999999999999986433
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=237.05 Aligned_cols=276 Identities=12% Similarity=0.089 Sum_probs=193.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Ee--eeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
+...|+||+++ .||+|. |++|+|||..++++. +. ..|...|.+++|||||++||+|+.|++|++|+. ....+..
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 35679999986 777765 999999999987653 32 345678999999999999999999999999873 2333322
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.. +|...+. ++++++.+++ +++ .++.+++|+...+ ....+..+|...+..++|+
T Consensus 105 ~~----------------~h~~~~~--~~~~~~~~l~-s~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 105 MT----------------SHSARVG--SLSWNSYILS-SGS------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EE----------------CCSSCEE--EEEEETTEEE-EEE------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred ec----------------CccceEE--EeecCCCEEE-EEe------cCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 22 3444444 5666778888 565 4689999998654 4556778899999999999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEE-EeccCCCCcEEEEEEccCCCeeE---EEEccCCcceEEEEEecC
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSF-DINEQIDSTVELLKWNCMSDLLA---AVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f-~l~~~~~~~V~~laWSpDg~~LA---s~~~d~~~~~V~lW~~~n 306 (1196)
|+|++|++++.|+ .|++|+.. |...... .....+...|..++|+|++..+. +++.++ +|++|+...
T Consensus 160 ~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~i~lwd~~~ 230 (318)
T 4ggc_A 160 PDGRHLASGGNDN------LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCS 230 (318)
T ss_dssp TTSSEEEEEETTS------CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC---EEEEEETTT
T ss_pred CCCCEEEEEecCc------ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC---EEEEEeccc
Confidence 9999999999864 69999853 2211100 01122346799999999987654 334445 899999887
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEe--cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT--LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~--~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
.... ....+......+.|+|.+.. +.+.+ .+|. |++|+++.. ..
T Consensus 231 ~~~~---~~~~~~~~v~~~~~~~~~~~-~~~~sg~~d~~-------------------------i~iwd~~~~-----~~ 276 (318)
T 4ggc_A 231 GACL---SAVDAHSQVCSILWSPHYKE-LISGHGFAQNQ-------------------------LVIWKYPTM-----AK 276 (318)
T ss_dssp CCEE---EEEECSSCEEEEEEETTTTE-EEEEECTTTCC-------------------------EEEEETTTC-----CE
T ss_pred cccc---ccccceeeeeeeeecccccc-eEEEEEcCCCE-------------------------EEEEECCCC-----cE
Confidence 5421 11122223377888888775 33333 2333 444443321 12
Q ss_pred eeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 385 LFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 385 ~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
..++ .|.+.|++|+||||| ++||+++.||+|+||++.+
T Consensus 277 ~~~l~gH~~~V~~l~~spdg--~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPDG--ATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEECCCSSCEEEEEECTTS--SCEEEEETTTEEEEECCSC
T ss_pred EEEEcCCCCCEEEEEEcCCC--CEEEEEecCCeEEEEECCC
Confidence 2344 488999999999999 8999999999999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=249.40 Aligned_cols=285 Identities=13% Similarity=0.045 Sum_probs=205.1
Q ss_pred CCCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeEE----Ee----------eeecCcEEEEEECC-CCCEEEEEeCCc
Q 000992 75 GDSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNATE----VV----------GRVEGGVRFISPSP-DGDLLGVTTGFG 138 (1196)
Q Consensus 75 ~~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~e----~v----------g~~~~~I~~~awSP-Dg~~LA~~s~d~ 138 (1196)
.+.|.+++|+| +++.|++++.||+|++||..++... .. ..|.+.|.+++|+| ++++|++++.|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 46899999999 9999999999999999999875321 11 13788999999999 888999999999
Q ss_pred eEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCC---ceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 139 QILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG---KYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 139 tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG---~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
+|.+|+.. ...+.... +...+..++|+|++ .+++ +++ .++.|++||..+++.
T Consensus 123 ~i~iwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFN-----------------FEETVYSHHMSPVSTKHCLVA-VGT------RGPKVQLCDLKSGSC 178 (408)
T ss_dssp EEEEEETTTTEEEEEEE-----------------CSSCEEEEEECSSCSSCCEEE-EEE------SSSSEEEEESSSSCC
T ss_pred eEEEeeCCCCccceecc-----------------CCCceeeeEeecCCCCCcEEE-EEc------CCCeEEEEeCCCcce
Confidence 99999733 22222221 22456899999854 4888 565 468999999989999
Q ss_pred EEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec--------------cCCCCcEEEEE
Q 000992 215 QASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNGLERSSFDIN--------------EQIDSTVELLK 279 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~--------------~~~~~~V~~la 279 (1196)
...+..|.+.+.+++|+|+|+ ++|+++.++ .|++|+..........+. ..+...|.+++
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADS------RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCC------cEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 999999999999999999999 588988864 699999642211101110 12356799999
Q ss_pred EccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC----CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeec
Q 000992 280 WNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR----DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1196)
Q Consensus 280 WSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~----~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1196)
|+|||++|++++.|+ .|++|++.+..... ....... ....+.+.+ .
T Consensus 253 ~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------------------------~ 302 (408)
T 4a11_B 253 FTSDGLHLLTVGTDN---RMRLWNSSNGENTL--VNYGKVCNNSKKGLKFTVSC-------------------------G 302 (408)
T ss_dssp ECTTSSEEEEEETTS---CEEEEETTTCCBCC--CCCCCCCCCCSSCCCCEECC-------------------------S
T ss_pred EcCCCCEEEEecCCC---eEEEEECCCCccce--eccccccccccccceeEEec-------------------------C
Confidence 999999999999999 89999998753200 0000000 000011111 1
Q ss_pred CCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCC
Q 000992 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~ 426 (1196)
.+...+++.+++.+.+|++.... ....+ .|...|.+++|+|++ +.|++++.||+|++|++.+..
T Consensus 303 ~~~~~~~~~~~~~i~v~d~~~~~-----~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 303 CSSEFVFVPYGSTIAVYTVYSGE-----QITMLKGHYKTVDCCVFQSNF--QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SSSCEEEEEETTEEEEEETTTCC-----EEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEEECC--
T ss_pred CCceEEEEecCCEEEEEECcCCc-----ceeeeccCCCeEEEEEEcCCC--CEEEEECCCCeEEEEeCCCCC
Confidence 12234445566677888765422 22344 388899999999999 899999999999999998643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=260.18 Aligned_cols=246 Identities=15% Similarity=0.130 Sum_probs=179.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.++++.|++++.|+.|..|+. ..+... .+.+ +.+| .+.|.+++|+|+++.|++++.||+|++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~--~~~~~~-~~~~----~~~h----~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQ--DGNGWK-HART----FSDH----DKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEE--ETTEEE-ECCC----BCCC----SSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEc--cCCceE-EEEE----EecC----CceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 6888999999999999999999999999 443200 1111 3333 468999999999999999999999999
Q ss_pred EECCCCe----EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcccc-CCCCe
Q 000992 102 HSVDGNA----TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS-SFSFK 176 (1196)
Q Consensus 102 w~~~~~~----~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~-~~~~v 176 (1196)
||..++. ......|.+.|.+++|||||++||+++.|++|++|+.. ....+... ..+.+ |...+
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~--------~~~~~~h~~~v 149 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE----QENDWWVS--------KHLKRPLRSTI 149 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---------CCCC--------EEECSSCCSCE
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC----Ccccceee--------eEeecccCCCe
Confidence 9998765 44555578999999999999999999999999987532 11110000 01223 67789
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECC------------------CCcEEEEeccCCCceeEEEEcCCCCeEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD------------------SGTLQASSELKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~------------------~G~l~~~~e~~~~~v~slawsPdG~~IA 238 (1196)
.+++|+|||++|| +++ .|++|+|||.. .|++...+ +|.+.+.+++|+|+|++||
T Consensus 150 ~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~ 221 (377)
T 3dwl_C 150 LSLDWHPNNVLLA-AGC------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA 221 (377)
T ss_dssp EEEEECTTSSEEE-EEE------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred EEEEEcCCCCEEE-EEe------CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence 9999999999999 565 46899999973 36677777 8889999999999999999
Q ss_pred EEecCCCCCCCCeEEEEeCCCeeE-E--EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 239 AVYDRKSENKCPSIVFYERNGLER-S--SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~~-~--~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+++.| ..|++|+...... . ...+.. +...|.+++|+|||++||+++.++ +.+|+.....|
T Consensus 222 ~~~~d------~~i~iwd~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~ 284 (377)
T 3dwl_C 222 YAGHD------SSVTIAYPSAPEQPPRALITVKL-SQLPLRSLLWANESAIVAAGYNYS----PILLQGNESGW 284 (377)
T ss_dssp EEETT------TEEC-CEECSTTSCEEECCCEEC-SSSCEEEEEEEETTEEEEEESSSS----EEEECCCC---
T ss_pred EEeCC------CcEEEEECCCCCCcceeeEeecC-CCCceEEEEEcCCCCEEEEEcCCc----EEEEEeCCCce
Confidence 99986 4799999543221 0 011222 356799999999999999998877 55777664444
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=255.51 Aligned_cols=255 Identities=9% Similarity=0.055 Sum_probs=185.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccc-------ccceeecccccccccc----CCC----CCCEEEEEEccC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNE-------RASIKTAISAEIEHID----LEP----GDSITAFDYLME 86 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~-------~~~~~~~~~~~l~~~~----~~~----~~~v~~v~~spd 86 (1196)
.+.+++|+++++.|++++.|+.|..|+. ..+. ...++. ..+.+|. .+. .+.|.+++|+|+
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~--~~~~~~~~~~~~~~~~~---~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQ--EQENKIQSHSRGEYNVY---STFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEE--CC-----CCCCCCEEEE---EEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEe--cCCCCCCcccccceeEe---cccccccccccccccccccCceEEEEEcCC
Confidence 8999999999999999999999999998 3332 111110 0133331 000 157999999999
Q ss_pred C--CEEEEEECCCcEEEEECCCCeEE-----------------------------------------EeeeecCcEEEEE
Q 000992 87 K--EALIVGTSSGLLLLHSVDGNATE-----------------------------------------VVGRVEGGVRFIS 123 (1196)
Q Consensus 87 ~--~~La~as~dG~I~lw~~~~~~~e-----------------------------------------~vg~~~~~I~~~a 123 (1196)
+ ..|++++.||+|++|+..++... ....|.+.|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 9 79999999999999998763321 1244788999999
Q ss_pred ECCCCCEEEEEeCCceEEEEecc--CceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCC
Q 000992 124 PSPDGDLLGVTTGFGQILVMTHD--WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKL 200 (1196)
Q Consensus 124 wSPDg~~LA~~s~d~tV~l~~~~--~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~ 200 (1196)
|||||++||++ .|++|++|+.. ...+...... ...+.+|...+.+++|+||| ++|| +++ .
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~p~~~~~l~-s~~------~ 247 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIK---------PANMEELTEVITAAEFHPNSCNTFV-YSS------S 247 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECC---------CSSGGGCCCCEEEEEECSSCTTEEE-EEE------T
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecc---------cccccccCcceEEEEECCCCCcEEE-EEe------C
Confidence 99999999998 89999998743 1111111111 11244677889999999999 8999 565 4
Q ss_pred CCEEEEEECCCCcE----EEEeccCCC------------ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--CeeE
Q 000992 201 HKRLKVWERDSGTL----QASSELKAF------------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--GLER 262 (1196)
Q Consensus 201 d~~irVWd~~~G~l----~~~~e~~~~------------~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~ 262 (1196)
|++|+|||..++++ ..+++.+.. .+.+++|+|+|++||+++. . .|++|+.. +...
T Consensus 248 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~------~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 248 KGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-L------SVKVWDLNMENRPV 320 (447)
T ss_dssp TSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-S------EEEEEETTCCSSCS
T ss_pred CCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-C------eEEEEeCCCCcccc
Confidence 68999999988886 677777765 8999999999999999986 3 69999964 4333
Q ss_pred EEEEeccCCC---------C---cEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 263 SSFDINEQID---------S---TVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 263 ~~f~l~~~~~---------~---~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
..+....... . .+..++|||||++||+++.|+ +|++|++.+..
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg---~v~iwd~~~~~ 375 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN---FFRMFDRNTKR 375 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT---EEEEEETTTCC
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC---EEEEEEcCCCc
Confidence 3232111000 0 134599999999999999999 99999998765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=245.74 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=203.3
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV 104 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~ 104 (1196)
+++|+ ++.+++++.++.|+.|+. .++... .+ +. ....+.|.+++|+|+++.|++++.||.|++||.
T Consensus 98 ~~~~s--~~~l~~~~~d~~v~lw~~--~~~~~~-~~------~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 98 LLDWS--NLNVVAVALERNVYVWNA--DSGSVS-AL------AE---TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CEEEC--TTSEEEEEETTEEEEEET--TTCCEE-EE------EE---CCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEeec--CCCEEEEECCCeEEEeeC--CCCcEe-Ee------ee---cCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 35555 456788888999999999 554431 11 11 112468999999999999999999999999999
Q ss_pred CCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc
Q 000992 105 DGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG 183 (1196)
Q Consensus 105 ~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp 183 (1196)
.+++. .....|.+.|.+++| +++.|++++.|++|.+|+...... .. ..+.+|...+.+++|+|
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~-----------~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH---QI-----------GTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC---EE-----------EEEECCSSCEEEEEECT
T ss_pred cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc---ee-----------eEEcCCCCCeeEEEEcC
Confidence 87654 455567899999999 567999999999999987431110 00 01225667889999999
Q ss_pred CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeC-CCee
Q 000992 184 DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYER-NGLE 261 (1196)
Q Consensus 184 DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~-nGl~ 261 (1196)
||++|+ +++ .|++|+|||..+++...+..+|.+.+.+++|+|+|. ++++++... +..|.+|+. +|..
T Consensus 228 ~~~~l~-s~~------~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 228 DGLQLA-SGG------NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM----DKQIHFWNAATGAR 296 (401)
T ss_dssp TSSEEE-EEE------TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT----TCEEEEEETTTCCE
T ss_pred CCCEEE-EEe------CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC----CCEEEEEECCCCCE
Confidence 999999 565 468999999989999999988999999999999875 666654111 357999995 4444
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEE--ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVV--RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~--~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
...+ . +...|.+++|+|||+.|++++ .|+ .|++|++.+.......++..+......+.|+|++.. |.+++
T Consensus 297 ~~~~--~--~~~~v~~~~~s~~~~~l~~~~g~~dg---~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~~ 368 (401)
T 4aez_A 297 VNTV--D--AGSQVTSLIWSPHSKEIMSTHGFPDN---NLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI-LSTAA 368 (401)
T ss_dssp EEEE--E--CSSCEEEEEECSSSSEEEEEECTTTC---EEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSE-EEEEC
T ss_pred EEEE--e--CCCcEEEEEECCCCCeEEEEeecCCC---cEEEEecCCccceeEEEecCCCCCEEEEEECCCCCE-EEEEe
Confidence 4333 2 235799999999999999965 677 899999998765444444444334488999998875 66666
Q ss_pred cCCcEE
Q 000992 340 LDGQIT 345 (1196)
Q Consensus 340 ~~g~~~ 345 (1196)
.+|.+.
T Consensus 369 ~dg~i~ 374 (401)
T 4aez_A 369 SDENLK 374 (401)
T ss_dssp TTSEEE
T ss_pred CCCcEE
Confidence 677654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-23 Score=247.60 Aligned_cols=324 Identities=12% Similarity=0.071 Sum_probs=225.0
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++.+ +++.|++++.|+.|..||. .+++. +.+ +.+| .+.|.+++|+|++ .|++|+.||+|++|
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~--~~~~~---~~~----~~~h----~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDS--INKKF---LLQ----LSGH----DGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEET--TTTEE---EEE----ECCC----SSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEEC--CCCcE---EEE----EeCC----CcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 344455 5689999999999999998 44443 111 3334 4689999999998 99999999999999
Q ss_pred ECCCCeE-EEeeeecCcEEEEEEC--CCCCEEEEEeCCceEEEEeccC-ceeeeeeccccc-------CccccccCcccc
Q 000992 103 SVDGNAT-EVVGRVEGGVRFISPS--PDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELA-------EGFDVHEPELSS 171 (1196)
Q Consensus 103 ~~~~~~~-e~vg~~~~~I~~~awS--PDg~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~-------~~~~Vs~tqf~~ 171 (1196)
|..+++. .....|.+.|.+++|+ ||+.+|++++.|++|++|+..- ............ .........+.+
T Consensus 189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (464)
T 3v7d_B 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence 9998765 3555678999999998 6889999999999999987321 111110000000 000000112335
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
|...+.++ +++|.+++ +++ .|++|++||..++++..++.+|.+.+.+++|+|+|++|++++.|+ .
T Consensus 269 ~~~~v~~~--~~~~~~l~-~~~------~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg------~ 333 (464)
T 3v7d_B 269 HMASVRTV--SGHGNIVV-SGS------YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT------T 333 (464)
T ss_dssp CSSCEEEE--EEETTEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS------C
T ss_pred ccceEEEE--cCCCCEEE-EEe------CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC------c
Confidence 66666665 78899999 565 468999999989999999999999999999999999999999864 6
Q ss_pred EEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEcc
Q 000992 252 IVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHP 329 (1196)
Q Consensus 252 V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp 329 (1196)
|++|+. +|..... +.. +...|..++|+ ++.|++++.|+ +|++|+..+... .+.++.... ..+.|+|
T Consensus 334 i~vwd~~~~~~~~~--~~~-h~~~v~~~~~~--~~~l~s~s~dg---~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~ 401 (464)
T 3v7d_B 334 IRIWDLENGELMYT--LQG-HTALVGLLRLS--DKFLVSAAADG---SIRGWDANDYSR----KFSYHHTNLSAITTFYV 401 (464)
T ss_dssp EEEEETTTTEEEEE--ECC-CSSCEEEEEEC--SSEEEEEETTS---EEEEEETTTCCE----EEEEECTTCCCEEEEEE
T ss_pred EEEEECCCCcEEEE--EeC-CCCcEEEEEEc--CCEEEEEeCCC---cEEEEECCCCce----eeeecCCCCccEEEEEe
Confidence 999995 5654433 333 45679999998 58999999999 999999987542 233333333 5567777
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lA 409 (1196)
++.. +..++ +| .+++|++..... .......+.+.|++|+|+.+ ..++
T Consensus 402 ~~~~-l~~~~-dg-------------------------~i~iwd~~~g~~---~~~~~~~~~~~v~~v~~~~~---~l~~ 448 (464)
T 3v7d_B 402 SDNI-LVSGS-EN-------------------------QFNIYNLRSGKL---VHANILKDADQIWSVNFKGK---TLVA 448 (464)
T ss_dssp CSSE-EEEEE-TT-------------------------EEEEEETTTCCE---EESCTTTTCSEEEEEEEETT---EEEE
T ss_pred CCCE-EEEec-CC-------------------------eEEEEECCCCcE---EehhhccCCCcEEEEEecCC---EEEE
Confidence 6653 33333 34 344444432110 00011246788999999833 4666
Q ss_pred EEECCCcEEEEeC
Q 000992 410 AILSDGCLCVVDL 422 (1196)
Q Consensus 410 s~~~dg~v~lw~~ 422 (1196)
+++.||.+.+|-+
T Consensus 449 ~~~~~g~~~i~~l 461 (464)
T 3v7d_B 449 AVEKDGQSFLEIL 461 (464)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEeCCeEEEEEe
Confidence 7777777766654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=239.55 Aligned_cols=297 Identities=11% Similarity=-0.012 Sum_probs=203.9
Q ss_pred EeeeecCcEEEEEECCC----CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccC-
Q 000992 111 VVGRVEGGVRFISPSPD----GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD- 184 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPD----g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD- 184 (1196)
+...|.+.|.+++|||+ ...++++++++.|.+|+.. ...+.....+... .|...+.+++|+||
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA-----------DADENFYTCAWTYDS 81 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS-----------CTTCCEEEEEEEECT
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc-----------CCCCcEEEEEeccCC
Confidence 34457899999999995 4455556667799999743 3333332222111 25567899999999
Q ss_pred ---CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCC-C
Q 000992 185 ---GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERN-G 259 (1196)
Q Consensus 185 ---G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~n-G 259 (1196)
|++|| +++ .+++|+|||..+|++...+.+|.+.+.+++|+| +|++||+++.|+ .|++|+.. |
T Consensus 82 ~~~~~~l~-~~~------~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~~~ 148 (366)
T 3k26_A 82 NTSHPLLA-VAG------SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQTD 148 (366)
T ss_dssp TTCCEEEE-EEE------TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETTTT
T ss_pred CCCCCEEE-Eec------CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEeecC
Confidence 77899 565 468999999989999999999999999999999 999999999864 69999964 4
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE-----------------------
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR----------------------- 316 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~----------------------- 316 (1196)
.....+.....+...|.+++|+|||+.|++++.|+ +|++|++.+.... +.+.
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH---SLKLWRINSKRMM--NAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS---CEEEEESCSHHHH--HHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred eEEEEecccccccCceeEEEECCCCCEEEEecCCC---CEEEEECCCCccc--cccceeEEecCCCCcccccceeeccCc
Confidence 33332211123457899999999999999999999 8999998754210 0000
Q ss_pred -----EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC---------CCC
Q 000992 317 -----YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM---------PPP 382 (1196)
Q Consensus 317 -----~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v---------ppp 382 (1196)
.+......+.|+ + ..+.+++.+|. +++|+++.... ...
T Consensus 224 ~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~-------------------------i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--G-DLILSKSCENA-------------------------IVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp EEECSSCSSCCCEEEEE--T-TEEEEECSSSE-------------------------EEEEEESSTTCCGGGCCTTCCCE
T ss_pred cccccCCcceEEEEEEc--C-CEEEEEecCCE-------------------------EEEEeCCCccccccccccCCcch
Confidence 011112445555 1 23444444444 44444332111 001
Q ss_pred ceeeee-cCCCCEEEEEEecC--CCCCEEEEEECCCcEEEEeCCCCCccc----cccCCceeeeeecccccCCcEEEEEE
Q 000992 383 MYLFSL-KFPTAVTEMAFYSK--SSKNCLAAILSDGCLCVVDLPAPDMLE----DLEGTEFVVEACISETAFGSVIHLIW 455 (1196)
Q Consensus 383 m~~~~l-~~~~~V~~Vafspd--g~~~~lAs~~~dg~v~lw~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~v~~l~~ 455 (1196)
.....+ .|...|++++|+|+ + +.||+++.||.|++|++.+..... .+.++ .+...|..++|
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~ 343 (366)
T 3k26_A 276 TILGRFDYSQCDIWYMRFSMDFWQ--KMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHH----------KCGAAIRQTSF 343 (366)
T ss_dssp EEEEEEECSSCCSSCCCCEECTTS--SEEEEECTTSCEEEEECCSSSGGGCEEEEECCT----------TCCSCEEEEEE
T ss_pred heeccccccCCcEEEEEEcCCCCC--cEEEEEecCCcEEEEECCCCCCccccceEEccc----------ccCCceEEEEe
Confidence 112233 37778999999999 8 899999999999999998654331 11111 12468999999
Q ss_pred ecCCeEEEEEecCCCCceEEEEe
Q 000992 456 LGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 456 ~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+|++++|++++.+ ..+.+|++
T Consensus 344 s~~~~~l~s~~~d--g~i~iwd~ 364 (366)
T 3k26_A 344 SRDSSILIAVCDD--ASIWRWDR 364 (366)
T ss_dssp CTTSSEEEEEETT--SEEEEEEC
T ss_pred CCCCCeEEEEeCC--CEEEEEEe
Confidence 9999999998875 57888875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=239.34 Aligned_cols=284 Identities=10% Similarity=0.013 Sum_probs=203.2
Q ss_pred ceeEEeeecCCCEEEEE-eC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFA-SS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as 94 (1196)
.+.+++|.+++..++++ +. |+.|..|++ ..++.. .+. ..++ .+.|.+++|+|+ ++.|++++
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~--~~~~~~-~~~-----~~~~----~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI--QHGDLK-LLR-----EIEK----AKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEE--CSSSEE-EEE-----EEEE----SSCEEEEECTTCCTTTCCEEEEE
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeC--CCCccc-cee-----eecc----cCcEEEEEEcCCCCCCceEEEec
Confidence 78999999999766654 44 788999999 444331 111 1122 358999999999 69999999
Q ss_pred CCCcEEEEECCCCe--EEEeeeecCcEEEE------EECCCCCEEEEEeCCceEEEEecc-Cc-eeeeeecccccCcccc
Q 000992 95 SSGLLLLHSVDGNA--TEVVGRVEGGVRFI------SPSPDGDLLGVTTGFGQILVMTHD-WD-LLYENPLEELAEGFDV 164 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~--~e~vg~~~~~I~~~------awSPDg~~LA~~s~d~tV~l~~~~-~d-~~~~~~l~~~~~~~~V 164 (1196)
.||+|++||..++. +.....|.+.|.++ +|||||+.|++++.|++|++|+.. .. ++.....+..
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------ 161 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG------ 161 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT------
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC------
Confidence 99999999998754 44555678999999 458999999999999999998632 21 2222221111
Q ss_pred ccCccccCCCCeEEEE----EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC---CCCeE
Q 000992 165 HEPELSSSFSFKSPIS----WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP---SGANI 237 (1196)
Q Consensus 165 s~tqf~~~~~~v~~is----WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP---dG~~I 237 (1196)
.+...+.+++ |+|||++|+ +++ .++.|++||..++++... ..+.+.+.+++|+| +|++|
T Consensus 162 ------~~~~~v~~~~~~~~~~~~~~~l~-~~~------~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l 227 (357)
T 3i2n_A 162 ------ENKRDCWTVAFGNAYNQEERVVC-AGY------DNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKL 227 (357)
T ss_dssp ------SCCCCEEEEEEECCCC-CCCEEE-EEE------TTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEE
T ss_pred ------CCCCceEEEEEEeccCCCCCEEE-EEc------cCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEE
Confidence 1123567887 899999999 565 468999999978877544 55788899999999 99999
Q ss_pred EEEecCCCCCCCCeEEEEeCCC-eeEEEEEec--cCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEecCC------
Q 000992 238 AAVYDRKSENKCPSIVFYERNG-LERSSFDIN--EQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFSNN------ 307 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~--~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~n~------ 307 (1196)
++++.+ ..|.+|+... .....+... ..+...|.+++|+|+|+ +||+++.|+ .|++|++.+.
T Consensus 228 ~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 228 VATSLE------GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG---GLHLWKYEYPIQRSKK 298 (357)
T ss_dssp EEEEST------TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS---EEEEEEEECCSCC--C
T ss_pred EEECCC------CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC---cEEEeecCCCcccccc
Confidence 999885 4799998532 111112111 13456899999999999 899999999 9999998743
Q ss_pred -----------EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 308 -----------HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 308 -----------~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.+.+...+..+......+.|+|++...+..++.+|.+.+
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred cCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 222334444443344889999998873325666776653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-24 Score=251.54 Aligned_cols=317 Identities=11% Similarity=0.061 Sum_probs=215.6
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEeccccc---ccccceeeccccccc-cccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQ---NERASIKTAISAEIE-HIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~---~~~~~~~~~~~~~l~-~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+.+++|.+ ++..|++++.|+.|..||. .. +.. .... +. .| .+.|.+++|+|+++.|++++.|
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~--~~~~~~~~-~~~~-----~~~~h----~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNL--KEIIVGEV-YSSS-----LTYDC----SSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEH--HHHHTTCC-CSCS-----EEEEC----SSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeEC--cccccCcc-ccee-----eeccC----CCCEEEEEEeCCCCEEEEEeCC
Confidence 799999999 9999999999999999998 33 110 0000 11 12 4689999999999999999999
Q ss_pred CcEEEEECC---CCeE-EEeee------------ecCcEEEEE--ECCCCCEEEEEeCCceEEEEec-cCceeeeeeccc
Q 000992 97 GLLLLHSVD---GNAT-EVVGR------------VEGGVRFIS--PSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEE 157 (1196)
Q Consensus 97 G~I~lw~~~---~~~~-e~vg~------------~~~~I~~~a--wSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~ 157 (1196)
|+|++||.+ +++. ..... +...+.++. |+|||.+|++++.|++|++|+. ....+......
T Consensus 133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 211 (437)
T 3gre_A 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS- 211 (437)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC-
T ss_pred CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC-
Confidence 999999984 3322 21111 245566666 7789999999999999999973 33433332221
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEc----C
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWM----P 232 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slaws----P 232 (1196)
.|...+.+++|+|||++|+ +++ .|++|+|||..+|++..+.. ++...+.+++|+ |
T Consensus 212 -------------~h~~~v~~~~~s~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 212 -------------PRHGAVSSICIDEECCVLI-LGT------TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp -------------GGGCCEEEEEECTTSCEEE-EEE------TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred -------------CCCCceEEEEECCCCCEEE-EEc------CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 1456789999999999999 565 46899999998999988875 677789999665 5
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEecc-----------------------CCCCcEEEEEEccCCCeeE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINE-----------------------QIDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~-----------------------~~~~~V~~laWSpDg~~LA 288 (1196)
+|++||+++.| ..|++|+.. |.....+.-.. .+...|.+++|+ ++++|+
T Consensus 272 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~ 344 (437)
T 3gre_A 272 NSVIVVGGSSK------TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILL 344 (437)
T ss_dssp TEEEEEEESTT------EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEE
T ss_pred CccEEEEEcCC------CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEE
Confidence 68899999886 469999964 55444443110 134568999999 889999
Q ss_pred EEEccCCcceEEEEEecCCEEEEEEEEEEecCCc---EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEc
Q 000992 289 AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG---IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1196)
Q Consensus 289 s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~---~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1196)
+++.|+ +|++|++.+... .+.+..+.... ....+++.. .+.... +.. ..
T Consensus 345 s~~~d~---~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~----------~~ 396 (437)
T 3gre_A 345 TDEATS---SIVMFSLNELSS--SKAVISPSRFSDVFIPTQVTANL-----------TMLLRK--MKR----------TS 396 (437)
T ss_dssp EEGGGT---EEEEEETTCGGG--CEEEECC--CCCEEEEEEEETTE-----------EEEEEE--CC-------------
T ss_pred ecCCCC---eEEEEECCCccc--ceEEecccccCceEEEEEeecce-----------EEEEEe--ccc----------cc
Confidence 999999 999999987542 12222211010 111121111 000000 000 00
Q ss_pred CCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
+.. + . ....|.+.|++|+|++++.+.+|++++.||+|++|+
T Consensus 397 ~~~----------~----~-~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 397 THS----------V----D-DSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccc----------c----C-cccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000 0 0 011378899999999993227999999999999995
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=240.37 Aligned_cols=248 Identities=15% Similarity=0.211 Sum_probs=192.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|+.|++ ...... .+.+ +.+| .+.|.+++|+|+ ++.|++++.||+|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~--~~~~~~-~~~~----~~~h----~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEV--EGETHK-LIDT----LTGH----EGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEE--ETTEEE-EEEE----ECCC----SSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEec--CCCcce-eeeE----ecCC----CCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 7899999999999999999999999998 422221 1111 3333 468999999988 9999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
++||..+++ +.....|...|.+++|+|+ |++|++++.|++|++|+..-. ..... .+.+|.
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------~~~~~~ 147 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------------IIDAHA 147 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE--------------EEECCT
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE--------------EecCCC
Confidence 999999875 3344556889999999999 999999999999999873211 11111 122456
Q ss_pred CCeEEEEEcc-------------CCceEEEeeccccccCCCCEEEEEECCCCc----EEEEeccCCCceeEEEEcCC---
Q 000992 174 SFKSPISWRG-------------DGKYFATLSEFCNSSKLHKRLKVWERDSGT----LQASSELKAFMGAVLEWMPS--- 233 (1196)
Q Consensus 174 ~~v~~isWsp-------------DG~~lAsvss~d~~~~~d~~irVWd~~~G~----l~~~~e~~~~~v~slawsPd--- 233 (1196)
..+.+++|+| ||.+|+ +++ .+++|+|||..++. +...+.+|.+.+.+++|+|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFV-TGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEE-EEE------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred CceEEEEEcCccccccccccCCCCCCEEE-EEe------CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 7889999999 799999 565 46899999986554 55667789999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEe-c-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEE
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDI-N-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHW 309 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l-~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~w 309 (1196)
|++||+++.|+ .|++|+..... .....+ . ..+...|.+++|+|||++||+++.|+ .|++|++. ...|
T Consensus 221 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 221 RSYLASVSQDR------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKENLEGKW 291 (379)
T ss_dssp SEEEEEEETTS------CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS---SEEEEEEEETTEE
T ss_pred CCeEEEEeCCC------EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC---cEEEEeCCCCCcc
Confidence 89999999864 69999965321 001112 2 22456799999999999999999999 89999987 4555
Q ss_pred E
Q 000992 310 Y 310 (1196)
Q Consensus 310 y 310 (1196)
.
T Consensus 292 ~ 292 (379)
T 3jrp_A 292 E 292 (379)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-24 Score=240.09 Aligned_cols=277 Identities=15% Similarity=0.105 Sum_probs=203.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe----EEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEec-cCc
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA----TEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTH-DWD 148 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~----~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~-~~d 148 (1196)
.+.|.+++|+|+++.|++++.||+|++|+..++. ......|...|.+++|+|||+ +|++++.||+|.+|+. .-.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 90 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP 90 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC
Confidence 4689999999999999999999999999998765 444445789999999999999 9999999999999864 322
Q ss_pred eeeeeecccccCccccccCcccc--CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC---------CcEEEE
Q 000992 149 LLYENPLEELAEGFDVHEPELSS--SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---------GTLQAS 217 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~--~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~---------G~l~~~ 217 (1196)
... .+.+ |...+.+++|+| +.+|+ +++ .+++|++||..+ +++..+
T Consensus 91 ~~~----------------~~~~~~~~~~v~~l~~~~-~~~l~-s~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~ 146 (342)
T 1yfq_A 91 SFQ----------------ALTNNEANLGICRICKYG-DDKLI-AAS------WDGLIEVIDPRNYGDGVIAVKNLNSNN 146 (342)
T ss_dssp SEE----------------ECBSCCCCSCEEEEEEET-TTEEE-EEE------TTSEEEEECHHHHTTBCEEEEESCSSS
T ss_pred ceE----------------eccccCCCCceEEEEeCC-CCEEE-EEc------CCCeEEEEcccccccccccccCCeeeE
Confidence 111 1224 677899999999 99999 565 469999999866 665555
Q ss_pred eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccCC
Q 000992 218 SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFEE 295 (1196)
Q Consensus 218 ~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~~ 295 (1196)
.. +.+.+.+++|+|++ +++++.+ ..|.+|+... ..........++...|.+++|+| ||++|++++.|+
T Consensus 147 ~~-~~~~v~~~~~~~~~--l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg- 216 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSSR--LIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG- 216 (342)
T ss_dssp SS-SCCCEEEEEECSSE--EEEEEST------TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-
T ss_pred Ee-eCCceEEEEecCCc--EEEEeCC------CeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-
Confidence 55 77889999999999 7777775 4799999754 21100011223456799999999 999999999999
Q ss_pred cceEEEEEecCC--E--EEEEEEEEEecC---------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 296 YDSVKICFFSNN--H--WYLKYEIRYLRR---------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 296 ~~~V~lW~~~n~--~--wylkq~l~~~~~---------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
.|++|+.... . ......+..+.. ....+.|+|++.. |.+++.+|.+. .|++.
T Consensus 217 --~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~----vwd~~-------- 281 (342)
T 1yfq_A 217 --RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIIS----CWNLQ-------- 281 (342)
T ss_dssp --EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEE----EEETT--------
T ss_pred --cEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEE----EEcCc--------
Confidence 9999998654 0 011233443322 3378899998765 66666666654 33321
Q ss_pred EEcCCEEEEeeccccCCCCCceeeee-cC-CCCEEEEEEecCCCCCEEEEEECCCc-EEEEeC
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSL-KF-PTAVTEMAFYSKSSKNCLAAILSDGC-LCVVDL 422 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l-~~-~~~V~~Vafspdg~~~~lAs~~~dg~-v~lw~~ 422 (1196)
.+..+ .++ .| ..+|.+++ |++ +.||+++.||+ .+.|..
T Consensus 282 --~~~~~----------------~~~~~~h~~~v~~~~--~~~--~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 282 --TRKKI----------------KNFAKFNEDSVVKIA--CSD--NILCLATSDDTFKTNAAI 322 (342)
T ss_dssp --TTEEE----------------EECCCCSSSEEEEEE--ECS--SEEEEEEECTHHHHCSSS
T ss_pred --cHhHh----------------hhhhcccCCCceEec--CCC--CeEEEEecCCcccccccc
Confidence 11111 222 24 78899999 999 89999999998 655553
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=255.62 Aligned_cols=274 Identities=12% Similarity=0.092 Sum_probs=194.6
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcE
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I 99 (1196)
.+++++|.| +...|++++.|+.|..||+ ..++....+. +.+| .+.|.+|+|+| +++.|++++.||+|
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~--~~~~~~~~~~-----~~gH----~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNF--GIKDKPTFIK-----GIGA----GGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECS--SCCSCCEEEC-----CCSS----SCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEEC--CCCCceeEEE-----ccCC----CCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 699999998 5668999999999999999 4444321111 2333 46899999998 78999999999999
Q ss_pred EEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
++||..++.+..... +...+.+++|||||++||+++.||+|.+|+.....+. .+.+|...|
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~----------------~~~~h~~~v 253 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELW----------------NLRMHKKKV 253 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCC----------------CSBCCSSCE
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeE----------------EEecccceE
Confidence 999999877664432 2345789999999999999999999999875433221 233677889
Q ss_pred EEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEE---eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 177 SPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQAS---SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 177 ~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~---~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.+++|+|+|. +|| +++ .|++|+|||..+++.... ..+|.+.|.+++|+|+|++||+++.|+ .|
T Consensus 254 ~~v~~~p~~~~~~~-s~s------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~------~i 320 (435)
T 4e54_B 254 THVALNPCCDWFLA-TAS------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS------EI 320 (435)
T ss_dssp EEEEECTTCSSEEE-EEE------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS------CE
T ss_pred EeeeecCCCceEEE-Eec------CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC------EE
Confidence 9999999998 555 454 478999999866654332 356888999999999999999999864 69
Q ss_pred EEEeCC-CeeEEEEEeccC---CCCcEEEEEEccCCCeeEEEEccCC---------cceEEEEEecCCEEEEEEEEEEec
Q 000992 253 VFYERN-GLERSSFDINEQ---IDSTVELLKWNCMSDLLAAVVRFEE---------YDSVKICFFSNNHWYLKYEIRYLR 319 (1196)
Q Consensus 253 ~~~e~n-Gl~~~~f~l~~~---~~~~V~~laWSpDg~~LAs~~~d~~---------~~~V~lW~~~n~~wylkq~l~~~~ 319 (1196)
++|+.. |.....+..... ....+....|+|++.+++++..+.+ ..+|++|+..+... ...+..+.
T Consensus 321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~--~~~l~~~~ 398 (435)
T 4e54_B 321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM--MCQLYDPE 398 (435)
T ss_dssp EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE--EEEECCSS
T ss_pred EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE--EEEEeCCC
Confidence 999953 333222211100 1123556789999999988865431 23799999887642 22222222
Q ss_pred CC-cEE-EEEccCCCceEEEE
Q 000992 320 RD-GIR-FMWHPTKPLQLICW 338 (1196)
Q Consensus 320 ~~-~~~-v~Wsp~~~~~L~~~ 338 (1196)
.. ..+ ..|||++.. |+.+
T Consensus 399 ~~~v~s~~~fspdg~~-lasg 418 (435)
T 4e54_B 399 SSGISSLNEFNPMGDT-LASA 418 (435)
T ss_dssp CCCCCCEEEECTTSSC-EEEE
T ss_pred CCcEEEEEEECCCCCE-EEEE
Confidence 22 233 468998764 4443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-22 Score=237.50 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=218.5
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeeccccc
Q 000992 82 DYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELA 159 (1196)
Q Consensus 82 ~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~ 159 (1196)
.++++|+.|++|+.||+|++||..+++. ..+..|.++|.+++|+ ++.|++++.||+|++|+. ..+.+..
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~------- 194 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHT------- 194 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEE-------
T ss_pred EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEE-------
Confidence 3566799999999999999999988764 3555679999999998 569999999999999973 2322222
Q ss_pred CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 160 EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 160 ~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+.+|...+.+++|+ +.+++ +++ .|++|++||..+|+...+..+|.+.+.+++| +|++|++
T Consensus 195 ---------~~~h~~~v~~~~~~--~~~l~-s~s------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 254 (445)
T 2ovr_B 195 ---------LYGHTSTVRCMHLH--EKRVV-SGS------RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS 254 (445)
T ss_dssp ---------ECCCSSCEEEEEEE--TTEEE-EEE------TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE
T ss_pred ---------ECCCCCcEEEEEec--CCEEE-EEe------CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE
Confidence 22566788999995 56788 565 4699999999899999999999999999999 8999999
Q ss_pred EecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEe
Q 000992 240 VYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYL 318 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~ 318 (1196)
++.++ .|++|+.. +.... .+.. +...|.+++| ||..|++++.|+ +|++|++.+... ...+..+
T Consensus 255 ~~~dg------~i~iwd~~~~~~~~--~~~~-~~~~v~~~~~--~~~~l~~~~~d~---~i~i~d~~~~~~--~~~~~~~ 318 (445)
T 2ovr_B 255 GAYDF------MVKVWDPETETCLH--TLQG-HTNRVYSLQF--DGIHVVSGSLDT---SIRVWDVETGNC--IHTLTGH 318 (445)
T ss_dssp EETTS------CEEEEEGGGTEEEE--EECC-CSSCEEEEEE--CSSEEEEEETTS---CEEEEETTTCCE--EEEECCC
T ss_pred EcCCC------EEEEEECCCCcEeE--EecC-CCCceEEEEE--CCCEEEEEeCCC---eEEEEECCCCCE--EEEEcCC
Confidence 99864 69999954 43332 2332 3567999999 899999999999 999999987642 2233222
Q ss_pred cCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee----cCCCCE
Q 000992 319 RRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL----KFPTAV 394 (1196)
Q Consensus 319 ~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l----~~~~~V 394 (1196)
......+.|++ . .+.+++.+|.+ ++|+++... ...++ .|...|
T Consensus 319 ~~~v~~~~~~~--~-~l~~~~~dg~i-------------------------~vwd~~~~~-----~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 319 QSLTSGMELKD--N-ILVSGNADSTV-------------------------KIWDIKTGQ-----CLQTLQGPNKHQSAV 365 (445)
T ss_dssp CSCEEEEEEET--T-EEEEEETTSCE-------------------------EEEETTTCC-----EEEEECSTTSCSSCE
T ss_pred cccEEEEEEeC--C-EEEEEeCCCeE-------------------------EEEECCCCc-----EEEEEccCCCCCCCE
Confidence 22224444432 2 34555555544 333332110 11122 267789
Q ss_pred EEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCC--Cc
Q 000992 395 TEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR--HS 472 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~--~~ 472 (1196)
.+++|+ + +.|++++.||+|++|++.+......+. ......+...+..++|+|++.++|+++.+.. ..
T Consensus 366 ~~~~~~--~--~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 366 TCLQFN--K--NFVITSSDDGTVKLWDLKTGEFIRNLV-------TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp EEEEEC--S--SEEEEEETTSEEEEEETTTCCEEEEEE-------ECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred EEEEEC--C--CEEEEEeCCCeEEEEECCCCceeeeee-------ccccCCCCceEEEEEecCCEEEEEEcccCCCCccE
Confidence 999996 4 699999999999999998654332210 0001234458999999999999999887643 23
Q ss_pred eEEEEe
Q 000992 473 NYFRGA 478 (1196)
Q Consensus 473 ~~~~~~ 478 (1196)
+.+|++
T Consensus 435 l~v~df 440 (445)
T 2ovr_B 435 LLVLDF 440 (445)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 555555
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=240.04 Aligned_cols=257 Identities=15% Similarity=0.152 Sum_probs=188.5
Q ss_pred EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceE
Q 000992 111 VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYF 188 (1196)
Q Consensus 111 ~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~l 188 (1196)
+...|.+.|.+++|||||++||+++.||+|++|+..... ..... .+.+|...|.+++|+|+ |++|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~-----------~~~~h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLID-----------TLTGHEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE--EEEEE-----------EECCCSSCEEEEEECCGGGCSEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc--ceeee-----------EecCCCCcEEEEEeCCCCCCCEE
Confidence 445679999999999999999999999999998743111 11111 12356678999999988 9999
Q ss_pred EEeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCe-eEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERS 263 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~ 263 (1196)
+ +++ .|++|+|||..+|+ .......|.+.+.+++|+|+ |++|++++.+ ..|++|+.... ...
T Consensus 73 ~-s~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 73 A-SCS------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTS 139 (379)
T ss_dssp E-EEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCC
T ss_pred E-Eec------cCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCcee
Confidence 9 565 46899999998886 66677788999999999999 9999999986 47999996533 122
Q ss_pred EEEeccCCCCcEEEEEEcc-------------CCCeeEEEEccCCcceEEEEEecCC--EEEEEEEEEEecCCcEEEEEc
Q 000992 264 SFDINEQIDSTVELLKWNC-------------MSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYLRRDGIRFMWH 328 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSp-------------Dg~~LAs~~~d~~~~~V~lW~~~n~--~wylkq~l~~~~~~~~~v~Ws 328 (1196)
.+.+.. +...|.+++|+| |+.+|++++.|+ +|++|++.+. .+.+...+..+......+.|+
T Consensus 140 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 140 PIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 215 (379)
T ss_dssp EEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred eEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC---eEEEEEecCCCcceeeEEEEecccCcEeEEEEC
Confidence 223332 356799999999 799999999999 9999998653 344444444444344889999
Q ss_pred cCC--CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee-eeecCCCCEEEEEEecCCCC
Q 000992 329 PTK--PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL-FSLKFPTAVTEMAFYSKSSK 405 (1196)
Q Consensus 329 p~~--~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~-~~l~~~~~V~~Vafspdg~~ 405 (1196)
|++ +..|++++.+|.+.+ |++. ....+..... ....+...|++++|+|+|
T Consensus 216 p~~~~~~~l~s~~~dg~i~i----wd~~---------------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-- 268 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCII----WTQD---------------------NEQGPWKKTLLKEEKFPDVLWRASWSLSG-- 268 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEE----EEES---------------------STTSCCEEEESSSSCCSSCEEEEEECSSS--
T ss_pred CCCCCCCeEEEEeCCCEEEE----EeCC---------------------CCCccceeeeeccccCCCcEEEEEEcCCC--
Confidence 995 455777776776643 3322 1110000000 111367889999999999
Q ss_pred CEEEEEECCCcEEEEeCCC
Q 000992 406 NCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 406 ~~lAs~~~dg~v~lw~~~~ 424 (1196)
+.||+++.||.|++|++..
T Consensus 269 ~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 269 NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEEESSSSEEEEEEEE
T ss_pred CEEEEecCCCcEEEEeCCC
Confidence 8999999999999999874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-23 Score=242.61 Aligned_cols=282 Identities=12% Similarity=0.109 Sum_probs=206.4
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN 196 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~ 196 (1196)
.++.++||++ .+||+|. |++|++|+. .++......+ ++|.+.|.+|+|+|||++|| +++
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~--------------~~~~~~V~sv~fspdg~~la-sgs--- 166 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQM--------------EQPGEYISSVAWIKEGNYLA-VGT--- 166 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEEC--------------CSTTCCEEEEEECTTSSEEE-EEE---
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEe--------------cCCCCcEEEEEECCCCCEEE-EEE---
Confidence 4678999987 5888776 889999973 3333322222 24557789999999999999 676
Q ss_pred ccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE
Q 000992 197 SSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE 276 (1196)
Q Consensus 197 ~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~ 276 (1196)
.|++|+|||..+|+++.+..+|...+.+++| +|++|++++.+ ..+.+|+..........+.. +...+.
T Consensus 167 ---~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d------~~i~~~d~~~~~~~~~~~~~-h~~~~~ 234 (420)
T 4gga_A 167 ---SSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-HSQEVC 234 (420)
T ss_dssp ---TTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETT------SEEEEEETTSSSCEEEEEEC-CSSCEE
T ss_pred ---CCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCC------CceeEeeecccceeeEEecc-ccccee
Confidence 4689999999999999999999998888777 56899999986 46999986543333223443 356799
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA 354 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~ 354 (1196)
.+.|+|+|++|++++.|+ .|++|+..+..- ...+....+......+.|+|.+...+.+++.+
T Consensus 235 ~~~~~~~g~~l~s~~~D~---~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs------------- 298 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDN---LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT------------- 298 (420)
T ss_dssp EEEECTTSSEEEEEETTS---CEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECT-------------
T ss_pred eeeecCCCCeeeeeeccc---cceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeec-------------
Confidence 999999999999999999 999999865321 11112222222337789999887755554321
Q ss_pred cCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCCCCCcccccc
Q 000992 355 VMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLPAPDMLEDLE 432 (1196)
Q Consensus 355 ~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~~~~~~~~~~ 432 (1196)
.+++|++|++... .+...+.+...|.++.|+|++ +.+++++ .||+|++|+..+..+...+.
T Consensus 299 ----------~D~~I~iwd~~t~-----~~~~~~~~~~~v~~~~~~~~~--~~lv~~sg~~d~~I~iwd~~~~~~v~~l~ 361 (420)
T 4gga_A 299 ----------SDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHY--KELISGHGFAQNQLVIWKYPTMAKVAELK 361 (420)
T ss_dssp ----------TTCEEEEEETTTT-----EEEEEEECSSCEEEEEEETTT--TEEEEEECTTTCCEEEEETTTCCEEEEEC
T ss_pred ----------CCCEEEEEeCCcc-----ccceeeccccceeeeeecCCC--CeEEEEEecCCCEEEEEECCCCcEEEEEc
Confidence 1224555554322 233445566789999999999 7877765 78999999998766665555
Q ss_pred CCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 433 GTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
| |.+.|..++|+|||.+|++++.+ .++.+|++
T Consensus 362 g------------H~~~V~~l~~spdg~~l~S~s~D--~tvriWdv 393 (420)
T 4gga_A 362 G------------HTSRVLSLTMSPDGATVASAAAD--ETLRLWRC 393 (420)
T ss_dssp C------------CSSCEEEEEECTTSSCEEEEETT--TEEEEECC
T ss_pred C------------CCCCEEEEEEcCCCCEEEEEecC--CeEEEEEC
Confidence 4 45689999999999999999876 68999987
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=250.56 Aligned_cols=291 Identities=13% Similarity=0.079 Sum_probs=202.9
Q ss_pred EEEEEEccCCCEEE-EEECCCcEEEEECCCC-e----EEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCcee
Q 000992 78 ITAFDYLMEKEALI-VGTSSGLLLLHSVDGN-A----TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 78 v~~v~~spd~~~La-~as~dG~I~lw~~~~~-~----~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
...++++|+...++ +++.||.|++|+.... + +..+..|.+.|.+++||| |+++||+++.||+|++|+..-...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 34578898876554 4688999999998642 2 233455789999999999 999999999999999997432110
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCceeE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGAV 227 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~s 227 (1196)
.. .. ... ...+.+|...|.+++|+||| .+|+ +++ .|++|+|||..+|+...+. ..|.+.+.+
T Consensus 117 ~~----~~--~~~--~~~~~~h~~~v~~~~~~p~~~~~l~-s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 181 (402)
T 2aq5_A 117 VL----PL--REP--VITLEGHTKRVGIVAWHPTAQNVLL-SAG------CDNVILVWDVGTGAAVLTLGPDVHPDTIYS 181 (402)
T ss_dssp SS----CB--CSC--SEEEECCSSCEEEEEECSSBTTEEE-EEE------TTSCEEEEETTTTEEEEEECTTTCCSCEEE
T ss_pred cc----cc--CCc--eEEecCCCCeEEEEEECcCCCCEEE-EEc------CCCEEEEEECCCCCccEEEecCCCCCceEE
Confidence 00 00 000 01234677889999999999 5888 565 4689999999899999988 789999999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEE---EccCCcceEEEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAV---VRFEEYDSVKICF 303 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~---~~d~~~~~V~lW~ 303 (1196)
++|+|+|++||+++.| ..|++|+. +|.....+. ..+....+..++|+|||++|+++ +.|+ .|++|+
T Consensus 182 ~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~---~i~iwd 251 (402)
T 2aq5_A 182 VDWSRDGALICTSCRD------KRVRVIEPRKGTVVAEKD-RPHEGTRPVHAVFVSEGKILTTGFSRMSER---QVALWD 251 (402)
T ss_dssp EEECTTSSCEEEEETT------SEEEEEETTTTEEEEEEE-CSSCSSSCCEEEECSTTEEEEEEECTTCCE---EEEEEE
T ss_pred EEECCCCCEEEEEecC------CcEEEEeCCCCceeeeec-cCCCCCcceEEEEcCCCcEEEEeccCCCCc---eEEEEc
Confidence 9999999999999986 47999995 454433221 23323348899999999999999 5677 899999
Q ss_pred ecCCEEEEEEEEEEecCC-cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 304 FSNNHWYLKYEIRYLRRD-GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~-~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
..+..-.+ ......... ...+.|+|++...+..+..+|.+.+ |++. .+. |..
T Consensus 252 ~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i----~d~~----------~~~------------~~~ 304 (402)
T 2aq5_A 252 TKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRY----FEIT----------SEA------------PFL 304 (402)
T ss_dssp TTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEE----EEEC----------SST------------TCE
T ss_pred CccccCCc-eEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEE----EEec----------CCC------------cce
Confidence 98743211 112222222 3889999998763333434666543 3221 111 000
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.......+..+|.+++|+|++ ..++ +.++.+++|++.+
T Consensus 305 ~~l~~~~~~~~v~~~~~sp~~--~~~~--s~~~~~~~~~l~~ 342 (402)
T 2aq5_A 305 HYLSMFSSKESQRGMGYMPKR--GLEV--NKCEIARFYKLHE 342 (402)
T ss_dssp EEEEEECCSSCCSEEEECCGG--GSCG--GGTEEEEEEEEET
T ss_pred EeecccccCCcccceEEeccc--ccce--ecceeEEEEEcCC
Confidence 011223356889999999999 6665 3678999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=227.85 Aligned_cols=281 Identities=11% Similarity=0.083 Sum_probs=199.8
Q ss_pred EEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 119 VRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 119 I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.++++|||++ +||++. |++|++|+. .++.+.... +++|...|.+++|+|||++|| +++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~--------------~~~~~~~V~~v~~~~~~~~l~-sgs---- 86 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQ--------------MEQPGEYISSVAWIKEGNYLA-VGT---- 86 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEE--------------CCSTTCCEEEEEECTTSSEEE-EEE----
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEE--------------ecCCCCeEEEEEECCCCCEEE-EEE----
Confidence 5779999996 788765 899999873 333333222 224567789999999999999 676
Q ss_pred cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEE
Q 000992 198 SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVEL 277 (1196)
Q Consensus 198 ~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~ 277 (1196)
.|++|+|||..+|++..+..+|...+. +++++++++++++.+ ..+.+|+..........+.. +...+..
T Consensus 87 --~Dg~v~iw~~~~~~~~~~~~~h~~~~~--~~~~~~~~l~s~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (318)
T 4ggc_A 87 --SSAEVQLWDVQQQKRLRNMTSHSARVG--SLSWNSYILSSGSRS------GHIHHHDVRVAEHHVATLSG-HSQEVCG 155 (318)
T ss_dssp --TTSEEEEEETTTTEEEEEEECCSSCEE--EEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC-CSSCEEE
T ss_pred --CCCcEEEeecCCceeEEEecCccceEE--EeecCCCEEEEEecC------CceEeeecCCCceeEEEEcC-ccCceEE
Confidence 479999999999999999998887655 466778899999985 45777875433222223333 3567999
Q ss_pred EEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeec
Q 000992 278 LKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAV 355 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~ 355 (1196)
++|+++|++|++++.|+ +|++|++.+..- ........+......+.|+|.++..+.+.+.+
T Consensus 156 ~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------------- 218 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDN---LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT-------------- 218 (318)
T ss_dssp EEECTTSSEEEEEETTS---CEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECT--------------
T ss_pred EEEcCCCCEEEEEecCc---ceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecC--------------
Confidence 99999999999999999 999999875321 00011111111236778888877644443321
Q ss_pred CCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE--CCCcEEEEeCCCCCccccccC
Q 000992 356 MENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL--SDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 356 ~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~--~dg~v~lw~~~~~~~~~~~~g 433 (1196)
...++++|+.... .......+...|..+.|+|++ +.+++++ .|++|++|+..+..+...+.|
T Consensus 219 ---------~~~~i~lwd~~~~-----~~~~~~~~~~~v~~~~~~~~~--~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g 282 (318)
T 4ggc_A 219 ---------SDRHIRIWNVCSG-----ACLSAVDAHSQVCSILWSPHY--KELISGHGFAQNQLVIWKYPTMAKVAELKG 282 (318)
T ss_dssp ---------TTCEEEEEETTTC-----CEEEEEECSSCEEEEEEETTT--TEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred ---------CCCEEEEEecccc-----cccccccceeeeeeeeecccc--cceEEEEEcCCCEEEEEECCCCcEEEEEcC
Confidence 1234556654322 122334567789999999999 7776655 799999999987666544544
Q ss_pred CceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 434 TEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 434 ~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
|.+.|..++|+|||.+||+++.+ .++.+|++
T Consensus 283 ------------H~~~V~~l~~spdg~~l~S~s~D--~~v~iWd~ 313 (318)
T 4ggc_A 283 ------------HTSRVLSLTMSPDGATVASAAAD--ETLRLWRC 313 (318)
T ss_dssp ------------CSSCEEEEEECTTSSCEEEEETT--TEEEEECC
T ss_pred ------------CCCCEEEEEEcCCCCEEEEEecC--CeEEEEEC
Confidence 45689999999999999998876 68999976
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=245.32 Aligned_cols=271 Identities=13% Similarity=0.123 Sum_probs=193.2
Q ss_pred eEEeeecCCCEEEE-EeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc-CCCEEEEEECCCcEEE
Q 000992 24 QFSALDIEQNRLFF-ASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM-EKEALIVGTSSGLLLL 101 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~-~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp-d~~~La~as~dG~I~l 101 (1196)
..++++++...+.+ ++.++.|..|++. ..+.....+.. +.+| .+.|.+++|+| +++.|++++.||+|++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~-~~~~~~~~~~~----~~~h----~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLG-KTGRVDKNVPL----VCGH----TAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETT-CCEECCTTCCC----BCCC----SSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECc-cCCCCCCCCce----EecC----CCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 34566665544443 4678899999983 11111001111 2333 46899999999 9999999999999999
Q ss_pred EECCCC--------eEEEeeeecCcEEEEEECCCC-CEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCcccc
Q 000992 102 HSVDGN--------ATEVVGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 102 w~~~~~--------~~e~vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|+..++ .+.....|...|.+++|+||| .+|++++.|++|++|+. ....+.... ..+
T Consensus 109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~ 174 (402)
T 2aq5_A 109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG--------------PDV 174 (402)
T ss_dssp EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC--------------TTT
T ss_pred EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe--------------cCC
Confidence 999875 233445578999999999998 69999999999999973 232222210 024
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCc-eeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFM-GAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~-v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
|.+.+.+++|+|||++|+ +++ .|++|+|||..+|+..... .+|.+. +..++|+|+|++|+++.... ..
T Consensus 175 ~~~~v~~~~~~~~~~~l~-~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~---~d 244 (402)
T 2aq5_A 175 HPDTIYSVDWSRDGALIC-TSC------RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM---SE 244 (402)
T ss_dssp CCSCEEEEEECTTSSCEE-EEE------TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT---CC
T ss_pred CCCceEEEEECCCCCEEE-EEe------cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC---CC
Confidence 567889999999999999 565 4689999999899998887 677765 79999999999999983211 13
Q ss_pred CeEEEEeCCCee--EEEEEeccCCCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEecCCEEEEEEEEEEec--CCcEE
Q 000992 250 PSIVFYERNGLE--RSSFDINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIR 324 (1196)
Q Consensus 250 ~~V~~~e~nGl~--~~~f~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~ 324 (1196)
..|.+|+..... ...+. ..+...|..++|+|||+.|++++ .|+ +|++|++.+..-++. .+..+. .....
T Consensus 245 ~~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg---~i~i~d~~~~~~~~~-~l~~~~~~~~v~~ 318 (402)
T 2aq5_A 245 RQVALWDTKHLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDS---SIRYFEITSEAPFLH-YLSMFSSKESQRG 318 (402)
T ss_dssp EEEEEEETTBCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCS---CEEEEEECSSTTCEE-EEEEECCSSCCSE
T ss_pred ceEEEEcCccccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCC---eEEEEEecCCCcceE-eecccccCCcccc
Confidence 579999965422 11122 22345799999999999998665 577 899999987652121 222222 22378
Q ss_pred EEEccCCCc
Q 000992 325 FMWHPTKPL 333 (1196)
Q Consensus 325 v~Wsp~~~~ 333 (1196)
+.|+|++..
T Consensus 319 ~~~sp~~~~ 327 (402)
T 2aq5_A 319 MGYMPKRGL 327 (402)
T ss_dssp EEECCGGGS
T ss_pred eEEeccccc
Confidence 999998864
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-22 Score=228.79 Aligned_cols=257 Identities=14% Similarity=0.102 Sum_probs=192.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~I 99 (1196)
.+.+++|++++..|++++.|+.|..|++ ..+....... ..+.++ .+.|.+++|+| |++.|++++.||+|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~---~~~~~~----~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKL--DKDTSNWELS---DSWRAH----DSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEE--CSSSCCEEEE---EEEECC----SSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEEC--CCCCCcceec---ceeccC----CCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 7999999999999999999999999999 4433221211 012333 46899999999 69999999999999
Q ss_pred EEEECCCCe----------EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEe-ccCceeeeeecccccCcccccc
Q 000992 100 LLHSVDGNA----------TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 100 ~lw~~~~~~----------~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
++||..++. +.....|.+.|.+++|+|+ |++|++++.|++|++|+ +....+......... ..+ .
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~-~ 160 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM--KVL-S 160 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE--ESC-S
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc--ccc-c
Confidence 999998742 3455557899999999999 99999999999999997 333332222211100 000 0
Q ss_pred CccccCCCCeEEEEEccC---CceEEEeeccccccCCCCEEEEEECCCCcE--EEEeccCCCceeEEEEcCCC----CeE
Q 000992 167 PELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLEWMPSG----ANI 237 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspD---G~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~e~~~~~v~slawsPdG----~~I 237 (1196)
....++...+.+++|+|+ +.+|+ +++ .++.+.+|+...+.. .....+|.+.+.+++|+|+| ++|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~-~~~------~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l 233 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLA-VSA------LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI 233 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEE-EEE------TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred cccCCcccceeEEEeccCCCCCcEEE-Eec------CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence 011145677899999998 99999 665 357888888877765 56677899999999999999 899
Q ss_pred EEEecCCCCCCCCeEEEEeCCCee-------------------------------------------EEE--EEeccCCC
Q 000992 238 AAVYDRKSENKCPSIVFYERNGLE-------------------------------------------RSS--FDINEQID 272 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~nGl~-------------------------------------------~~~--f~l~~~~~ 272 (1196)
|+++.|+ .|++|+..... ..+ ..+. .+.
T Consensus 234 ~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 306 (351)
T 3f3f_A 234 ATGCKDG------RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHN 306 (351)
T ss_dssp EEEETTS------CEEEEEEEECC---------------------------------------CCSEEEEEEEEEC-TTS
T ss_pred EEEcCCC------eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-ccc
Confidence 9999864 69999854210 001 1122 245
Q ss_pred CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
..|.+++|+|||++||+++.|+ +|++|++.+.
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~ 338 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDG---KVRLWKATYS 338 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTS---CEEEEEECTT
T ss_pred ccEEEEEEcCCCCEEEEecCCC---cEEEEecCcC
Confidence 6799999999999999999999 9999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-22 Score=222.90 Aligned_cols=264 Identities=12% Similarity=0.011 Sum_probs=201.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++| ++++.|++++.|+.|..|+. ..+... .. +..+ .+.|.+++|+|+++.|++++.||.|++
T Consensus 20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~--~~~~~~-~~------~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 20 DVRDVVA-VDDSKVASVSRDGTVRLWSK--DDQWLG-TV------VYTG----QGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CEEEEEE-EETTEEEEEETTSEEEEEEE--SSSEEE-EE------EEEC----SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CcEEEEe-cCCCEEEEEEcCCcEEEEEC--CCCEEE-EE------eecC----CccEEEEEECCCCCEEEEecCCCeEEE
Confidence 7889999 99999999999999999998 443321 11 2222 368999999999999999999999999
Q ss_pred EECCCC----eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGN----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~----~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+.... .+.....|...|.+++| +++.|++++.|++|.+|+ ......... .|...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~~----------------~~~~~v~ 146 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNLQ----------------AHNASVW 146 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEEE----------------CCSSCEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEecc----------------cCCCcee
Confidence 998652 23345557899999999 688999999999999997 333322222 4456789
Q ss_pred EEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+++|.| ++.+|+ +++ .++.|++||. ++....... +.+.+.+++|+|+|. +++++.+ ..|.+|
T Consensus 147 ~~~~~~~~~~~l~-~~~------~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~ 210 (313)
T 3odt_A 147 DAKVVSFSENKFL-TAS------ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSND------GLIKLV 210 (313)
T ss_dssp EEEEEETTTTEEE-EEE------TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETT------SEEEEE
T ss_pred EEEEccCCCCEEE-EEE------CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCC------CeEEEE
Confidence 999998 999999 565 4689999994 556666665 888999999999999 7777775 479999
Q ss_pred eCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 256 ERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 256 e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
+.. |.....+ .. +...|.+++|+||| .|++++.|+ +|++|++.+... .+.+..+......+.|+|++.
T Consensus 211 d~~~~~~~~~~--~~-~~~~i~~~~~~~~~-~l~~~~~dg---~v~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~-- 279 (313)
T 3odt_A 211 DMHTGDVLRTY--EG-HESFVYCIKLLPNG-DIVSCGEDR---TVRIWSKENGSL--KQVITLPAISIWSVDCMSNGD-- 279 (313)
T ss_dssp ETTTCCEEEEE--EC-CSSCEEEEEECTTS-CEEEEETTS---EEEEECTTTCCE--EEEEECSSSCEEEEEECTTSC--
T ss_pred ECCchhhhhhh--hc-CCceEEEEEEecCC-CEEEEecCC---EEEEEECCCCce--eEEEeccCceEEEEEEccCCC--
Confidence 964 4443333 32 35679999999999 688999998 999999987653 344544433448899999886
Q ss_pred EEEEecCCcEE
Q 000992 335 LICWTLDGQIT 345 (1196)
Q Consensus 335 L~~~~~~g~~~ 345 (1196)
+.+++.+|.+.
T Consensus 280 ~~~~~~dg~i~ 290 (313)
T 3odt_A 280 IIVGSSDNLVR 290 (313)
T ss_dssp EEEEETTSCEE
T ss_pred EEEEeCCCcEE
Confidence 45566666654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-21 Score=233.84 Aligned_cols=308 Identities=14% Similarity=0.092 Sum_probs=222.9
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
++.++++.|++++.|+.|..||. .+++. +.+ +.+| .+.|.+++|+ ++.|++++.||+|++||..+
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd~--~~~~~---~~~----~~~h----~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~ 188 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWSA--VTGKC---LRT----LVGH----TGGVWSSQMR--DNIIISGSTDRTLKVWNAET 188 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEET--TTCCE---EEE----CCCC----SSCEEEEEEE--TTEEEEEETTSCEEEEETTT
T ss_pred EEEEcCCEEEEEECCCcEEEEEC--CCCcE---EEE----EcCC----CCCEEEEEec--CCEEEEEeCCCeEEEEECCc
Confidence 45556899999999999999998 44443 111 3333 4689999998 67999999999999999998
Q ss_pred CeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 107 NAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 107 ~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
++. .....|.+.|.+++|+ ++.|++++.|++|.+|+.. ...+... .+|...+.+++| |
T Consensus 189 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~----------------~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 189 GECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL----------------MGHVAAVRCVQY--D 248 (445)
T ss_dssp TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE----------------ECCSSCEEEEEE--C
T ss_pred CcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE----------------cCCcccEEEEEE--C
Confidence 765 3555578999999995 5789999999999998732 3322221 245567899999 8
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERS 263 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~ 263 (1196)
|++++ +++ .+++|++||..+++...+..+|.+.+.+++| +|+.|++++.|+ .|++|+. +|....
T Consensus 249 ~~~l~-~~~------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~------~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 249 GRRVV-SGA------YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT------SIRVWDVETGNCIH 313 (445)
T ss_dssp SSCEE-EEE------TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS------CEEEEETTTCCEEE
T ss_pred CCEEE-EEc------CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC------eEEEEECCCCCEEE
Confidence 89999 565 4689999999899999999999999999999 899999999864 6999995 444333
Q ss_pred EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE---ecCCcEEEEEccCCCceEEEEec
Q 000992 264 SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY---LRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 264 ~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~---~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
.+.. +...+..++| ++++|++++.|+ +|++|+..+... .+.+.. +......+.|++ ..|.+++.
T Consensus 314 --~~~~-~~~~v~~~~~--~~~~l~~~~~dg---~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~ 380 (445)
T 2ovr_B 314 --TLTG-HQSLTSGMEL--KDNILVSGNADS---TVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFNK---NFVITSSD 380 (445)
T ss_dssp --EECC-CCSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCCE--EEEECSTTSCSSCEEEEEECS---SEEEEEET
T ss_pred --EEcC-CcccEEEEEE--eCCEEEEEeCCC---eEEEEECCCCcE--EEEEccCCCCCCCEEEEEECC---CEEEEEeC
Confidence 2332 3456777766 577999999999 999999987542 233332 111226677763 33566665
Q ss_pred CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe-eccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCc---
Q 000992 341 DGQITTYNFIWTTAVMENSTALVIDGSKILVT-PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGC--- 416 (1196)
Q Consensus 341 ~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt-~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~--- 416 (1196)
+|.+. .|++. +|..+... .+ ..-.+.+.|++++|+|++ ..+|+++.||+
T Consensus 381 dg~v~----iwd~~----------~~~~~~~~~~~-----------~~~~~~~~v~~~~~s~~~--~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 381 DGTVK----LWDLK----------TGEFIRNLVTL-----------ESGGSGGVVWRIRASNTK--LVCAVGSRNGTEET 433 (445)
T ss_dssp TSEEE----EEETT----------TCCEEEEEEEC-----------TTGGGTCEEEEEEECSSE--EEEEEECSSSSSCC
T ss_pred CCeEE----EEECC----------CCceeeeeecc-----------ccCCCCceEEEEEecCCE--EEEEEcccCCCCcc
Confidence 66553 23321 12221100 00 001367889999999999 89999999998
Q ss_pred -EEEEeCCC
Q 000992 417 -LCVVDLPA 424 (1196)
Q Consensus 417 -v~lw~~~~ 424 (1196)
|.+|+++.
T Consensus 434 ~l~v~df~~ 442 (445)
T 2ovr_B 434 KLLVLDFDV 442 (445)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 99999874
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-22 Score=228.75 Aligned_cols=275 Identities=8% Similarity=-0.005 Sum_probs=200.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~dG~I~ 100 (1196)
.+.+++|.+++..|++++.|+.|..|+. ..+........ +..+ ...|.+++|+|+++ .|++++.||+|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~--~~~~~~~~~~~----~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKF--DIQAKNVDLLQ----SLRY----KHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEE--ETTTTEEEEEE----EEEC----SSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEe--CCCCcccccee----eeec----CCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 7999999999999999999999999999 44331111111 2222 36899999999999 999999999999
Q ss_pred EEEC-CCCeEEEeee--ecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceee----eeecccccCccccccCccccC
Q 000992 101 LHSV-DGNATEVVGR--VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLY----ENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 101 lw~~-~~~~~e~vg~--~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~----~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+|+. .+++...+.. |...|.+++|+| ++.|++++.|++|++|+..- +.-. ...+. .+ .+
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~-~~ 149 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-----------NT-KV 149 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS-----------SS-SS
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee-----------EE-ee
Confidence 9999 8888777776 899999999999 99999999999999986320 0000 11111 11 25
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-Cc--EEEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GT--LQASSELKAFMGAVLEWMP-SGANIAAVYDRKSENK 248 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~--l~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~ 248 (1196)
...+.+++|+|++ ++ +++ .++.|++||..+ +. ......++...+.+++|+| +|++||+++.+
T Consensus 150 ~~~v~~~~~~~~~--l~-~~~------~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d----- 215 (342)
T 1yfq_A 150 KNKIFTMDTNSSR--LI-VGM------NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID----- 215 (342)
T ss_dssp CCCEEEEEECSSE--EE-EEE------STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-----
T ss_pred CCceEEEEecCCc--EE-EEe------CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC-----
Confidence 5678999999999 66 454 468999999966 54 3334456788899999999 99999999985
Q ss_pred CCeEEEEeCCC-------eeEEEEEeccC------CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEE
Q 000992 249 CPSIVFYERNG-------LERSSFDINEQ------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI 315 (1196)
Q Consensus 249 ~~~V~~~e~nG-------l~~~~f~l~~~------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l 315 (1196)
..|.+|+.+. .....+..... +...|.+++|+|||++||+++.|+ .|++|++.+... ...+
T Consensus 216 -g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~vwd~~~~~~--~~~~ 289 (342)
T 1yfq_A 216 -GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKK--IKNF 289 (342)
T ss_dssp -SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEE--EEEC
T ss_pred -CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCc---eEEEEcCccHhH--hhhh
Confidence 4699988543 22222322110 123799999999999999999999 899999988653 2333
Q ss_pred EEe-cCCcEEEEEccCCCceEEEEecCC
Q 000992 316 RYL-RRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 316 ~~~-~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
..+ ......+. |++.. |+.++.||
T Consensus 290 ~~~h~~~v~~~~--~~~~~-l~s~s~Dg 314 (342)
T 1yfq_A 290 AKFNEDSVVKIA--CSDNI-LCLATSDD 314 (342)
T ss_dssp CCCSSSEEEEEE--ECSSE-EEEEEECT
T ss_pred hcccCCCceEec--CCCCe-EEEEecCC
Confidence 333 22224455 66653 55555554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-22 Score=238.00 Aligned_cols=225 Identities=15% Similarity=0.112 Sum_probs=172.5
Q ss_pred CCEEEEEEccCCCEE-EEEECCCcEEEEECC--CCe-EEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce
Q 000992 76 DSITAFDYLMEKEAL-IVGTSSGLLLLHSVD--GNA-TEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~L-a~as~dG~I~lw~~~--~~~-~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~ 149 (1196)
+.|.+++|+|||+.| ++++.||+|++|+.. ++. +..+. .+...|.+++|||||++|++++.++.|.+|.. |+.
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~-~~~ 181 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI-NSI 181 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSC
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec-CCc
Confidence 369999999999996 899999999999998 654 34432 35688999999999999999999999988853 221
Q ss_pred eeee-ecccccCccccccCccccCCCCeEEEEEccC---CceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCc
Q 000992 150 LYEN-PLEELAEGFDVHEPELSSSFSFKSPISWRGD---GKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFM 224 (1196)
Q Consensus 150 ~~~~-~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD---G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~ 224 (1196)
.... .. ..+.+|...+.+++|+|| |++|+ +++ .|++|+|||..+|++..+ ..+|.+.
T Consensus 182 ~~~~~~~-----------~~~~~h~~~v~~~~~sp~~~~~~~l~-s~~------~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 182 PEEKFTQ-----------EPILGHVSMLTDVHLIKDSDGHQFII-TSD------RDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp CCSSCCC-----------CCSEECSSCEEEEEEEECTTSCEEEE-EEE------TTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred ccccccc-----------eeeecccCceEEEEEcCCCCCCcEEE-EEc------CCCcEEEEECCCCceeeeeecCCCCc
Confidence 1100 00 123356778999999999 99999 565 468999999988988877 5689999
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc----------------------CCCCcEEEEEEc
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE----------------------QIDSTVELLKWN 281 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~----------------------~~~~~V~~laWS 281 (1196)
+.+++|+ +|++||+++.| ..|++|+. +|.....+.+.. .....|..|+|+
T Consensus 244 v~~~~~s-d~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGD------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp EEEEEEC-STTEEEEEESS------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred eEEEEEC-CCCEEEEEeCC------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 9999999 99999999986 47999995 455444443220 123469999999
Q ss_pred cCCCeeEEEE-ccCCcceEEEEEe--cC-CEEEEEEEEEEecCCcEEEEEccC
Q 000992 282 CMSDLLAAVV-RFEEYDSVKICFF--SN-NHWYLKYEIRYLRRDGIRFMWHPT 330 (1196)
Q Consensus 282 pDg~~LAs~~-~d~~~~~V~lW~~--~n-~~wylkq~l~~~~~~~~~v~Wsp~ 330 (1196)
|||++|++++ .++ +|++|++ .. ..+...+.+..+ .....+.|+|+
T Consensus 317 ~~~~~l~~~~~~d~---~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 317 KNLPFVAFFVEATK---CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp SSSSEEEEEETTCS---EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred CCCCEEEEEECCCC---eEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 9999999999 777 8999999 32 333445556554 33488999994
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=256.66 Aligned_cols=281 Identities=10% Similarity=0.006 Sum_probs=187.1
Q ss_pred ceeEEeeecC------CCEEEEEeCCCcEEEEecccccccccc-eeecc--c-cccccccCCCCCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIE------QNRLFFASSANNIYSAQLSSFQNERAS-IKTAI--S-AEIEHIDLEPGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~------~~~l~~~s~~~~i~~~~~~~~~~~~~~-~~~~~--~-~~l~~~~~~~~~~v~~v~~spd~~~La 91 (1196)
.+..++|.++ ++.|++++.|+.|..|++ ..+.... ....+ | ..+.++ .+.|.+++|+|++ .|+
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~--~~~~~~~~~~~~~~~p~~~l~~h----~~~v~sv~~s~~~-~la 281 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEI--IDNATDVHVFKMCEKPSLTLSLA----DSLITTFDFLSPT-TVV 281 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEEC--CCCSSSSSEEECCCSCSEEECCT----TTCEEEEEESSSS-EEE
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEc--CCCccccccceeecCceEEEEcC----CCCEEEEEecCCC-eEE
Confidence 5778889886 579999999999999999 3332100 00000 0 012222 3689999999975 899
Q ss_pred EEECCCcEEEEECCCCe--EEEeeeecCcEEEE--EECCCC-CEEEEEeCCceEEEEe-ccCceeeeeecccccCccccc
Q 000992 92 VGTSSGLLLLHSVDGNA--TEVVGRVEGGVRFI--SPSPDG-DLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVH 165 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~--~e~vg~~~~~I~~~--awSPDg-~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs 165 (1196)
+|+.||+|++||..++. ......|.+.|.++ +|+||| ++||+++.|++|++|+ +..........+.
T Consensus 282 sgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~-------- 353 (524)
T 2j04_B 282 CGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF-------- 353 (524)
T ss_dssp EEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC--------
T ss_pred EEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc--------
Confidence 99999999999998653 23455578999999 689998 9999999999999986 2222221111110
Q ss_pred cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 166 EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 166 ~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
....+.+++|+|||+.|| +++ .+++|||||..+|.+..++.+|.+.|.+|+|||+|++||||+.|
T Consensus 354 ------~~~~v~~v~fsp~~~~l~-s~~------~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~D-- 418 (524)
T 2j04_B 354 ------RGSNLVPVVYCPQIYSYI-YSD------GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSAD-- 418 (524)
T ss_dssp ------SCCSCCCEEEETTTTEEE-EEC------SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETT--
T ss_pred ------ccCcccceEeCCCcCeEE-EeC------CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECC--
Confidence 012367899999999999 565 46899999988999888888899999999999999999999986
Q ss_pred CCCCCeEEEEeCCCeeEEEEE-ec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCc
Q 000992 246 ENKCPSIVFYERNGLERSSFD-IN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~-l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~ 322 (1196)
.+|++|+..+.....+. .. ......|++++|||||+.+.. .+. +++|..+ +.. +...+..+...+
T Consensus 419 ----gtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~----~~~~~~~~~g~--~~~~l~gh~~~V 486 (524)
T 2j04_B 419 ----GSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSS----YEVYPLTVNDV--SKAKIDAHGINI 486 (524)
T ss_dssp ----TEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE--CCC----CCCCC---------------CCCSC
T ss_pred ----CEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc--cCC----ceecccccCCc--ceeeecCCCceE
Confidence 47999996542110000 00 011225789999999996643 232 3343322 111 223444444444
Q ss_pred EEEEEccCCC--ceEEEEecCCcE
Q 000992 323 IRFMWHPTKP--LQLICWTLDGQI 344 (1196)
Q Consensus 323 ~~v~Wsp~~~--~~L~~~~~~g~~ 344 (1196)
..+.|+|+++ ..++.++.+|.+
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~v 510 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLL 510 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEE
T ss_pred EEEECCCCCCccHHHHhhccCceE
Confidence 7899999974 345555555544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=228.22 Aligned_cols=280 Identities=14% Similarity=0.106 Sum_probs=197.6
Q ss_pred CCCEEEEEEccC---CCEEEEEECCCcEEEEECCC-C-eE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 75 GDSITAFDYLME---KEALIVGTSSGLLLLHSVDG-N-AT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 75 ~~~v~~v~~spd---~~~La~as~dG~I~lw~~~~-~-~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
.+.|.+++|+|+ |+.|++++.||+|++||..+ + .+ .....|.+.|.+++|||||++||+++.|++|++|+..-.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 118 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN 118 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence 468999999999 69999999999999999986 3 33 455667899999999999999999999999999974322
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEE--ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
.... +.+|...+.+++| +|||++|+ +++ .|++|+|||..+++.......+. .+.
T Consensus 119 ~~~~----------------~~~~~~~v~~~~~~~~~~~~~l~-~~~------~dg~i~vwd~~~~~~~~~~~~~~-~~~ 174 (368)
T 3mmy_A 119 QAIQ----------------IAQHDAPVKTIHWIKAPNYSCVM-TGS------WDKTLKFWDTRSSNPMMVLQLPE-RCY 174 (368)
T ss_dssp EEEE----------------EEECSSCEEEEEEEECSSCEEEE-EEE------TTSEEEEECSSCSSCSEEEECSS-CEE
T ss_pred Ccee----------------eccccCceEEEEEEeCCCCCEEE-Ecc------CCCcEEEEECCCCcEEEEEecCC-Cce
Confidence 1111 1145567899999 99999999 565 46899999998998888777554 345
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCe----eEEEEccCCcceEEEE
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDL----LAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~----LAs~~~d~~~~~V~lW 302 (1196)
++.+. +..+++++.+ ..+.+|+..........+.......+..+++.+++.. +++++.|+ .|++|
T Consensus 175 ~~~~~--~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg---~i~i~ 243 (368)
T 3mmy_A 175 CADVI--YPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG---RVAIH 243 (368)
T ss_dssp EEEEE--TTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS---EEEEE
T ss_pred EEEec--CCeeEEEeCC------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC---cEEEE
Confidence 55555 4567777665 3599999765433222222223345667777766665 99999999 99999
Q ss_pred EecCCEE-EEEEEEEEecC------------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 303 FFSNNHW-YLKYEIRYLRR------------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 303 ~~~n~~w-ylkq~l~~~~~------------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
+.....- .....+..+.. ....+.|+|++.. |.+++.+|.+. .|++. .+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~s~~~dg~i~----iwd~~----------~~~~- 307 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGT-LATVGSDGRFS----FWDKD----------ARTK- 307 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCC-EEEEETTSCEE----EEETT----------TTEE-
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCE-EEEEccCCeEE----EEECC----------CCcE-
Confidence 9876421 01112222221 2477899998865 66666666654 23321 1111
Q ss_pred EEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 370 LVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
...+ .|..+|.+++|+|+| +.||+++.|+..+.|+.
T Consensus 308 ---------------~~~~~~~~~~v~~~~~s~~g--~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 308 ---------------LKTSEQLDQPISACCFNHNG--NIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---------------EEECCCCSSCEEEEEECTTS--SCEEEEECCCSTTCGGG
T ss_pred ---------------EEEecCCCCCceEEEECCCC--CeEEEEecccccccccc
Confidence 1222 367899999999999 89999999986665554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-22 Score=235.55 Aligned_cols=198 Identities=9% Similarity=-0.035 Sum_probs=151.1
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCe---E-EEee---------------------------------------
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---T-EVVG--------------------------------------- 113 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---~-e~vg--------------------------------------- 113 (1196)
.+.+++|+|||+.|++ +.+|.|.+||..+++ . ....
T Consensus 6 p~~~v~~s~dg~~l~~-~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFA-IIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEE-EETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEE-EeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 4678899999996554 568899999987765 2 1111
Q ss_pred ---------------eecCcEEEEEECCCCCEE-EEEeCCceEEEEecc---CceeeeeecccccCccccccCccccCCC
Q 000992 114 ---------------RVEGGVRFISPSPDGDLL-GVTTGFGQILVMTHD---WDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 114 ---------------~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~~~---~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.+.|.+++|||||+.| |+++.|++|++|+.. +..+.....+ .+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------~~~~ 150 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------------CFSK 150 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------------ECSS
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------------cCCC
Confidence 122369999999999996 888899999999743 3333222211 2346
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE----EeccCCCceeEEEEcCC---CCeEEEEecCCCCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA----SSELKAFMGAVLEWMPS---GANIAAVYDRKSEN 247 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~----~~e~~~~~v~slawsPd---G~~IAs~s~d~~~~ 247 (1196)
.+.+++|+|||++|+ +++ .++.|++|+..+++... ++.+|.+.+.+++|+|+ |++|++++.|.
T Consensus 151 ~v~~~~~sp~~~~l~-~~~------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~--- 220 (450)
T 2vdu_B 151 RPNAISIAEDDTTVI-IAD------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE--- 220 (450)
T ss_dssp CEEEEEECTTSSEEE-EEE------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS---
T ss_pred CceEEEEcCCCCEEE-EEe------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC---
Confidence 789999999999999 565 36899999987776543 56678899999999999 99999999864
Q ss_pred CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|++|+.. |.....+ + ..+...|.+++|+ ||++||+++.|+ +|++|++.+..
T Consensus 221 ---~i~vwd~~~~~~~~~~-~-~~h~~~v~~~~~s-d~~~l~s~~~d~---~v~vwd~~~~~ 273 (450)
T 2vdu_B 221 ---HIKISHYPQCFIVDKW-L-FGHKHFVSSICCG-KDYLLLSAGGDD---KIFAWDWKTGK 273 (450)
T ss_dssp ---CEEEEEESCTTCEEEE-C-CCCSSCEEEEEEC-STTEEEEEESSS---EEEEEETTTCC
T ss_pred ---cEEEEECCCCceeeee-e-cCCCCceEEEEEC-CCCEEEEEeCCC---eEEEEECCCCc
Confidence 69999953 4333222 2 2345789999999 999999999999 99999998765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-21 Score=227.15 Aligned_cols=298 Identities=8% Similarity=-0.045 Sum_probs=201.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE------eeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCc
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV------VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~------vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d 148 (1196)
..+.+++|+|++..+++++.+|+|.+||..+++... ...|.+.|.+++|+|||+++++++.|++|.+|+. ...
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 457799999988888888889999999999876542 1235678999999999999999999999999973 233
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVL 228 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~sl 228 (1196)
.+.... .|...+..++|+|||++++ +++ ..+++|++||..+|+.......+ +.+..+
T Consensus 203 ~~~~~~----------------~~~~~~~~~~~~~~~~~l~-~~~-----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~ 259 (433)
T 3bws_A 203 YKATVD----------------LTGKWSKILLYDPIRDLVY-CSN-----WISEDISVIDRKTKLEIRKTDKI-GLPRGL 259 (433)
T ss_dssp EEEEEE----------------CSSSSEEEEEEETTTTEEE-EEE-----TTTTEEEEEETTTTEEEEECCCC-SEEEEE
T ss_pred EEEEEc----------------CCCCCeeEEEEcCCCCEEE-EEe-----cCCCcEEEEECCCCcEEEEecCC-CCceEE
Confidence 332222 2345678999999999886 343 14689999999899888877653 457999
Q ss_pred EEcCCCCeEEEEecCCCCC--CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCee-EEEEccCCcceEEEEEe
Q 000992 229 EWMPSGANIAAVYDRKSEN--KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~--~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~L-As~~~d~~~~~V~lW~~ 304 (1196)
+|+|+|++|++++...... ....|.+|+.. |.....+. +...+..++|+|||+.| ++++.++ .|++|+.
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~---~v~v~d~ 332 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG----PPGNKRHIVSGNTENKIYVSDMCCS---KIEVYDL 332 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE----EEECEEEEEECSSTTEEEEEETTTT---EEEEEET
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc----CCCCcceEEECCCCCEEEEEecCCC---EEEEEEC
Confidence 9999999999887532100 13579999964 43332221 12368899999999755 5556777 8999999
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
.+... .+.+. +......+.|+|++.. +.+...+... .....++....+..+.+|+.... ..
T Consensus 333 ~~~~~--~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~----------~~~~~~~~g~~dg~v~~~d~~~~-----~~ 393 (433)
T 3bws_A 333 KEKKV--QKSIP-VFDKPNTIALSPDGKY-LYVSCRGPNH----------PTEGYLKKGLVLGKVYVIDTTTD-----TV 393 (433)
T ss_dssp TTTEE--EEEEE-CSSSEEEEEECTTSSE-EEEEECCCCC----------TTTCTTSCCSSCCEEEEEETTTT-----EE
T ss_pred CCCcE--EEEec-CCCCCCeEEEcCCCCE-EEEEecCCCc----------cccccccccccceEEEEEECCCC-----cE
Confidence 87642 23333 2223488999999865 4554432100 00000000001123444443221 11
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~ 424 (1196)
...+.....+.+++|+|+| +.|++++. |++|++|++++
T Consensus 394 ~~~~~~~~~~~~~~~s~dg--~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEAGNQPTGLDVSPDN--RYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECSSSEEEEEECTTS--CEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCCCceEEEcCCC--CEEEEEECCCCeEEEEEecC
Confidence 1233445678999999999 89888875 99999999863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=225.90 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=197.5
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccc-c-ccccCCCCCCEEEEEEcc-CCCEEEEEECCC
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAE-I-EHIDLEPGDSITAFDYLM-EKEALIVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~~~~v~~v~~sp-d~~~La~as~dG 97 (1196)
.+.+++|.+ +++.|++++.|+.|..|++ ..+............ + ..++....+.|.+++|+| +++.|++++.||
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~ 122 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDL--ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDK 122 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEEC--CCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTS
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEEC--CCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCC
Confidence 899999999 9999999999999999999 443321111100000 0 000001246899999999 788999999999
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCC---CCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPD---GDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPD---g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.|++||..+++....-.+...+.+++|+|+ +.+|++++.|+.|.+|+.. ...+. .+.+|.
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~----------------~~~~~~ 186 (408)
T 4a11_B 123 TLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH----------------ILQGHR 186 (408)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE----------------EECCCC
T ss_pred eEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee----------------eecCCC
Confidence 999999998876533346788999999995 4599999999999998632 22221 122566
Q ss_pred CCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCc-EEEEe---------------ccCCCceeEEEEcCCCCe
Q 000992 174 SFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGT-LQASS---------------ELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 174 ~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~---------------e~~~~~v~slawsPdG~~ 236 (1196)
..+.+++|+|||.+ |+ +++ .++.|++||..++. ..... .+|.+.+.+++|+|+|++
T Consensus 187 ~~v~~~~~~~~~~~ll~-~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 259 (408)
T 4a11_B 187 QEILAVSWSPRYDYILA-TAS------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH 259 (408)
T ss_dssp SCEEEEEECSSCTTEEE-EEE------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred CcEEEEEECCCCCcEEE-EEc------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence 78899999999995 77 554 46899999986654 33333 457788999999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCCC-eeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYERNG-LERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
|++++.++ .|.+|+... .....+... ......+.-......+..++.++.++ .|++|+..+... ..
T Consensus 260 l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~~--~~ 328 (408)
T 4a11_B 260 LLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQ--IT 328 (408)
T ss_dssp EEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCCE--EE
T ss_pred EEEecCCC------eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCC---EEEEEECcCCcc--ee
Confidence 99999864 599999643 221110000 00011122222233455566667777 899999987652 33
Q ss_pred EEEEecCCcEEEEEccCCCceEEEEecCCcEEE
Q 000992 314 EIRYLRRDGIRFMWHPTKPLQLICWTLDGQITT 346 (1196)
Q Consensus 314 ~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~ 346 (1196)
.+..+......+.|+|++.. |.+++.+|.+.+
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~i 360 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQE-LYSGSRDCNILA 360 (408)
T ss_dssp EECCCSSCEEEEEEETTTTE-EEEEETTSCEEE
T ss_pred eeccCCCeEEEEEEcCCCCE-EEEECCCCeEEE
Confidence 44444334488999999865 677777776653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=248.25 Aligned_cols=322 Identities=12% Similarity=0.070 Sum_probs=209.8
Q ss_pred CCCEEEEEEccCCCEEEEEEC-CC-----cEEEEECCCCeEE-Eeeeec------------------------CcEEEEE
Q 000992 75 GDSITAFDYLMEKEALIVGTS-SG-----LLLLHSVDGNATE-VVGRVE------------------------GGVRFIS 123 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~-dG-----~I~lw~~~~~~~e-~vg~~~------------------------~~I~~~a 123 (1196)
...|.+++|||||+.|++++. || +|.+||..+++.. +...+. .+|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457999999999999999998 88 8999999987654 332222 2378999
Q ss_pred ECCCCCEEEEEeCCceEEEEeccCc---eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCC
Q 000992 124 PSPDGDLLGVTTGFGQILVMTHDWD---LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKL 200 (1196)
Q Consensus 124 wSPDg~~LA~~s~d~tV~l~~~~~d---~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~ 200 (1196)
|||||+.||+++. ++|.+|+.... ... ++..+...+..++|||||++|| .++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----------------~l~~~~~~~~~~~~SPDG~~la-~~~------- 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----------------QLTHGEGFATDAKLSPKGGFVS-FIR------- 170 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCC----------------BCCCSSSCEEEEEECTTSSEEE-EEE-------
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEE----------------EcccCCcccccccCCCCCCEEE-EEe-------
Confidence 9999999999987 89988864322 111 1113345678999999999999 443
Q ss_pred CCEEEEEECCCCcEEEEeccCCCc----------------eeEEEEcCCCCeEEEEecCCCCC-----------------
Q 000992 201 HKRLKVWERDSGTLQASSELKAFM----------------GAVLEWMPSGANIAAVYDRKSEN----------------- 247 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~----------------v~slawsPdG~~IAs~s~d~~~~----------------- 247 (1196)
++.|++||..+|+.......+... +.+++|||||++||+++.+.+..
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 368999999788776655433321 37899999999999997653100
Q ss_pred ----------CCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC--cceEEEEEecCCEEEEEEE
Q 000992 248 ----------KCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE--YDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 248 ----------~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~--~~~V~lW~~~n~~wylkq~ 314 (1196)
....|.+|+.++ ...........+...+.+++| |||+.||+++.++. ...|.+|+..+... +..
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~ 327 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVL 327 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEE
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEE
Confidence 112677788654 332221111123457999999 99999998876432 23799999887653 223
Q ss_pred EEEecCC----cEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 315 IRYLRRD----GIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 315 l~~~~~~----~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
+..+... ...+.|+|++. .+.....+|.... |..+. +|. + ..+. .+
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l----~~~~~---------~~~-~--~~l~-------------~~ 377 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGS-ILWSSERTGFQHL----YRIDS---------KGK-A--AALT-------------HG 377 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSC-EEEEECTTSSCEE----EEECS---------SSC-E--EESC-------------CS
T ss_pred EEcCCCCcCCcCCceEECCCCe-EEEEecCCCccEE----EEEcC---------CCC-e--eeee-------------ec
Confidence 3332211 13678999987 4555555554322 21110 122 1 1111 23
Q ss_pred CCCEEEE-EEecCCCCCEEEEEEC-CC--cEEEEeCCC-CCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEE
Q 000992 391 PTAVTEM-AFYSKSSKNCLAAILS-DG--CLCVVDLPA-PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 465 (1196)
Q Consensus 391 ~~~V~~V-afspdg~~~~lAs~~~-dg--~v~lw~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~ 465 (1196)
...|.++ +||||| +.|+..+. ++ +++||+++. ......+.+ ...+..++|+|||+.|++.
T Consensus 378 ~~~v~~~~~~s~dg--~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-------------~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 378 NWSVDELLAVDEKA--GLAYFRAGIESARESQIYAVPLQGGQPQRLSK-------------APGMHSASFARNASVYVDS 442 (741)
T ss_dssp SSCEEEEEEEETTT--TEEEEEECSSCTTCBEEEEEETTCCCCEECCC-------------SCSEEEEEECTTSSEEEEE
T ss_pred ceEEEeEeEEeCCC--CEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-------------CCCceEEEECCCCCEEEEE
Confidence 4567777 599999 77755444 44 899999863 111111111 2357899999999988876
Q ss_pred ecCC
Q 000992 466 HHGP 469 (1196)
Q Consensus 466 ~~~~ 469 (1196)
..+.
T Consensus 443 ~~~~ 446 (741)
T 2ecf_A 443 WSNN 446 (741)
T ss_dssp EEET
T ss_pred ecCC
Confidence 5543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-20 Score=218.33 Aligned_cols=260 Identities=12% Similarity=0.061 Sum_probs=180.8
Q ss_pred EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcEEEEECCCCeEE-Ee
Q 000992 35 LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLLLLHSVDGNATE-VV 112 (1196)
Q Consensus 35 l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG~I~lw~~~~~~~e-~v 112 (1196)
+.+++.++.|..||+ .+++.. .. +.. ...+.+++|+|||+.| ++++.||+|++||..++++. .+
T Consensus 5 ~vs~~~d~~v~v~d~--~~~~~~---~~----~~~-----~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 5 YIANSESDNISVIDV--TSNKVT---AT----IPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEETTTTEEEEEET--TTTEEE---EE----EEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEEC--CCCeEE---EE----eec-----CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE
Confidence 344566889999999 444431 11 121 2468999999999987 56668999999999887764 33
Q ss_pred eeecCcEEEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEE
Q 000992 113 GRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFAT 190 (1196)
Q Consensus 113 g~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAs 190 (1196)
.. ...|.+++|||||+.|++++ .+++|.+|+.. ...+.... +...+..++|+|||++++.
T Consensus 71 ~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-----------------~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 71 PA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------------TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp EC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------CSSSEEEEEECTTSSEEEE
T ss_pred EC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-----------------CCCCcceEEECCCCCEEEE
Confidence 33 45899999999999887665 56999998743 22222211 1235689999999998851
Q ss_pred eeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEecc
Q 000992 191 LSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINE 269 (1196)
Q Consensus 191 vss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~ 269 (1196)
+++ .+++|++||..+|+.......+. .+..++|+|+|+.|+.++.. ...|.+|+... ..... +.
T Consensus 133 ~~~------~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~--~~- 197 (391)
T 1l0q_A 133 TNN------GDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDT--VK- 197 (391)
T ss_dssp EET------TTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE--EE-
T ss_pred EeC------CCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCC-----CCEEEEEECCCCeEEEE--Ee-
Confidence 333 46899999998999888877554 45899999999988544332 35799999653 32222 22
Q ss_pred CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 270 QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
....+..++|+|||+.|++++.+.....|++|+..+... .+.+..+ .....+.|+|++...+.....+|.+.
T Consensus 198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~ 269 (391)
T 1l0q_A 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVS 269 (391)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEECC-SSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE--EEEEecC-CCccEEEEccCCCEEEEEcCCCCEEE
Confidence 234689999999999999998421122899999987652 2333322 23378999999876334444566664
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-21 Score=224.66 Aligned_cols=323 Identities=13% Similarity=0.006 Sum_probs=215.4
Q ss_pred CEEEEE---EccCCCEEEEEE--------------CCCcEEEE--ECCCCeEEEeee--ecCcEEEEEECCCCCEEEEEe
Q 000992 77 SITAFD---YLMEKEALIVGT--------------SSGLLLLH--SVDGNATEVVGR--VEGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 77 ~v~~v~---~spd~~~La~as--------------~dG~I~lw--~~~~~~~e~vg~--~~~~I~~~awSPDg~~LA~~s 135 (1196)
.+..++ |+|+++.+.+++ .+|++.+| |..++....+.. ....+.+++|||++.++++++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 141 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLL 141 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBT
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeC
Confidence 456666 777776665443 33433444 444453332221 235577999999888888888
Q ss_pred CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 136 GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 136 ~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
.+++|.+|+.. .......... .+.+|...+.+++|+|||++++ +++ .+++|++||..+|+.
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~-s~~------~d~~v~~~d~~~~~~ 203 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPE-----------KYKKKLGFVETISIPEHNELWV-SQM------QANAVHVFDLKTLAY 203 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCH-----------HHHTTCCEEEEEEEGGGTEEEE-EEG------GGTEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCeEeeecCcc-----------cccccCCceeEEEEcCCCEEEE-EEC------CCCEEEEEECCCceE
Confidence 88999998733 3332211110 1225667789999999999999 565 368999999989999
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc-
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR- 292 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~- 292 (1196)
..+...+...+.+++|+|+|+.+++++.. ...|.+|+. +|.... .++ ....+..++|+|||+.|++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~~~d~~~~~~~~--~~~--~~~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 204 KATVDLTGKWSKILLYDPIRDLVYCSNWI-----SEDISVIDRKTKLEIR--KTD--KIGLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EEEEECSSSSEEEEEEETTTTEEEEEETT-----TTEEEEEETTTTEEEE--ECC--CCSEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEcCCCCCeeEEEEcCCCCEEEEEecC-----CCcEEEEECCCCcEEE--Eec--CCCCceEEEEcCCCCEEEEEECC
Confidence 98888888889999999999988655532 357999995 443322 222 2346999999999999999884
Q ss_pred -------cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEc
Q 000992 293 -------FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVID 365 (1196)
Q Consensus 293 -------d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viD 365 (1196)
|+ .|++|+..+... ...+.. ......+.|+|++...+.....+|.+.
T Consensus 275 ~~~~~~~dg---~i~~~d~~~~~~--~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~v~-------------------- 328 (433)
T 3bws_A 275 ASNQESGGG---RLGIYSMDKEKL--IDTIGP-PGNKRHIVSGNTENKIYVSDMCCSKIE-------------------- 328 (433)
T ss_dssp SCTTCSCCE---EEEEEETTTTEE--EEEEEE-EECEEEEEECSSTTEEEEEETTTTEEE--------------------
T ss_pred CCccccCCC---eEEEEECCCCcE--EeeccC-CCCcceEEECCCCCEEEEEecCCCEEE--------------------
Confidence 55 899999987653 222222 223477899998875333334444432
Q ss_pred CCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEEC---------------CCcEEEEeCCCCCcccc
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILS---------------DGCLCVVDLPAPDMLED 430 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~---------------dg~v~lw~~~~~~~~~~ 430 (1196)
+|++.... ....+.+...+.+++|+|+| +.|++++. ||.|++|+..+......
T Consensus 329 -----v~d~~~~~-----~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 329 -----VYDLKEKK-----VQKSIPVFDKPNTIALSPDG--KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp -----EEETTTTE-----EEEEEECSSSEEEEEECTTS--SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred -----EEECCCCc-----EEEEecCCCCCCeEEEcCCC--CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEE
Confidence 22222110 11233456678999999999 88888876 57999999976433311
Q ss_pred ccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 431 LEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 431 ~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+.+ ...+..++|+|+|++|+++... .+.+.+|.+
T Consensus 397 ~~~-------------~~~~~~~~~s~dg~~l~~~~~~-d~~i~v~~~ 430 (433)
T 3bws_A 397 WEA-------------GNQPTGLDVSPDNRYLVISDFL-DHQIRVYRR 430 (433)
T ss_dssp EEC-------------SSSEEEEEECTTSCEEEEEETT-TTEEEEEEE
T ss_pred ecC-------------CCCCceEEEcCCCCEEEEEECC-CCeEEEEEe
Confidence 111 2368999999999988876541 267888876
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=231.55 Aligned_cols=258 Identities=12% Similarity=0.036 Sum_probs=179.4
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
.+..++..+++++.|+.|+.||+ .+++.. .++. .+.|.++.|+|+ +++++.||+|++|+.++
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~--~~~~~~---~~~~----------~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQL--KDSKTI---TTIT----------TPNPRTGGEHPA---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEE--SSSSCE---EEEE----------EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred hhcCCCCEEEEECCCCcEEEEEC--CCCcEE---EEEe----------cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence 34467788999999999999999 444431 1111 135677788888 99999999999997763
Q ss_pred ---------Ce-EE-EeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccC
Q 000992 107 ---------NA-TE-VVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 107 ---------~~-~e-~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
++ +. ..-.|.+.|.+++|+| +|++||+++.|++|++|+.. ...+..... .+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---------------~~ 169 (343)
T 3lrv_A 105 QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---------------KS 169 (343)
T ss_dssp EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---------------CS
T ss_pred ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---------------CC
Confidence 33 22 2212457899999999 99999999999999998732 222111100 22
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-EEecc-CCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-ASSEL-KAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-~~~e~-~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
...+.+++|+|||++|| +++ .|++|+|||..+|+.. .+++. |.+.+.+++|+|+|++||+++++
T Consensus 170 ~~~i~~~~~~pdg~~la-sg~------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~------- 235 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLA-LYS------PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ------- 235 (343)
T ss_dssp SCCCCEEEECTTSCEEE-EEC------TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-------
T ss_pred CCceEEEEECCCCCEEE-EEc------CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-------
Confidence 34578999999999999 665 4689999999899887 77777 99999999999999999999953
Q ss_pred eEEEEeCCCee-EEEEEecc--CCCCcE--EEEEEccCCCeeEEEEc-cCCcceEEEEEecC--CEEEEEEEEEEecCCc
Q 000992 251 SIVFYERNGLE-RSSFDINE--QIDSTV--ELLKWNCMSDLLAAVVR-FEEYDSVKICFFSN--NHWYLKYEIRYLRRDG 322 (1196)
Q Consensus 251 ~V~~~e~nGl~-~~~f~l~~--~~~~~V--~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n--~~wylkq~l~~~~~~~ 322 (1196)
.|++|+..... .. .+.. .+...+ ..++|+|+|++||+++. |+ .|++|+... ..|-. ...
T Consensus 236 ~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~---~i~v~~~~~~~~~~~~--------~~~ 302 (343)
T 3lrv_A 236 TVVCFDLRKDVGTL--AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN---SLTIYKFDKKTKNWTK--------DEE 302 (343)
T ss_dssp BEEEEETTSSTTCB--SSCCCBC-----CCEEEEECTTSSEEEEEETTTT---EEEEEEECTTTCSEEE--------EEE
T ss_pred eEEEEEcCCCCcce--eecccccccccccceEEEECCCCCEEEEecCCCC---cEEEEEEcccccceEe--------cCc
Confidence 69999954221 11 0110 011223 36999999999999998 77 899999853 33532 011
Q ss_pred EEEEEcc---CCCceEEEEecCCcEE
Q 000992 323 IRFMWHP---TKPLQLICWTLDGQIT 345 (1196)
Q Consensus 323 ~~v~Wsp---~~~~~L~~~~~~g~~~ 345 (1196)
..+.|+| +.. .+.+.+.+|.+.
T Consensus 303 ~~~~~~~~~~~~~-~l~~~~~d~~~~ 327 (343)
T 3lrv_A 303 SALCLQSDTADFT-DMDVVCGDGGIA 327 (343)
T ss_dssp EECCC----CCCC-EEEEEEETTEEE
T ss_pred eeEecCccccccc-eeEEEecCCceE
Confidence 4567777 433 356666666543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-22 Score=233.76 Aligned_cols=304 Identities=10% Similarity=0.025 Sum_probs=189.5
Q ss_pred CCEEEEEE---ccCCCEEEEEECCCcEEEEECCC------Ce--EE---EeeeecCcEEEEEE-----------------
Q 000992 76 DSITAFDY---LMEKEALIVGTSSGLLLLHSVDG------NA--TE---VVGRVEGGVRFISP----------------- 124 (1196)
Q Consensus 76 ~~v~~v~~---spd~~~La~as~dG~I~lw~~~~------~~--~e---~vg~~~~~I~~~aw----------------- 124 (1196)
..+..+.| +|++..|+.++.++.|.+|+... .. .. ... +...+.+++|
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQ-TGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEE-CSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEe-cCCCeeeEeecCCccccccccCCCcce
Confidence 46777888 45555566666788899997521 11 11 111 2334444444
Q ss_pred ---CCCCCEEEEEeCCceEEEEeccC-ceeeeeecccccCccccccCccccCCCCeEEEEEcc--------CCceEEEee
Q 000992 125 ---SPDGDLLGVTTGFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG--------DGKYFATLS 192 (1196)
Q Consensus 125 ---SPDg~~LA~~s~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp--------DG~~lAsvs 192 (1196)
+|++.+||+++.|++|++|+... +......+.. +.+|.+.|.+++|+| ||++|| ++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~-----------~~gH~~~v~~v~~~p~~~~~~~~d~~~la-s~ 162 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGG-----------KSGHHNFVNDIDIADVYSADNRLAEQVIA-SV 162 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECT-----------TTSCSSCEEEEEEEEEECTTCSEEEEEEE-EE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecc-----------cCCCCCceEEEEEccccccccCCCCCEEE-EE
Confidence 56777899999999999997432 2222222222 337889999999998 999999 56
Q ss_pred ccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCC-CeeEEEE-----
Q 000992 193 EFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERN-GLERSSF----- 265 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f----- 265 (1196)
+ .|++|||||..++.......+|...+.+++|+|+|. +||+++.| ..|++|+.. |....+.
T Consensus 163 s------~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d------~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 163 G------DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN------GNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp E------TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCCC----------
T ss_pred E------CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC------CEEEEEECCCCcccccccccCC
Confidence 5 479999999877877777778889999999999985 89999886 479999853 2211110
Q ss_pred -------Eec----------cCCCCcEEEEEEc-cCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEE
Q 000992 266 -------DIN----------EQIDSTVELLKWN-CMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMW 327 (1196)
Q Consensus 266 -------~l~----------~~~~~~V~~laWS-pDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~W 327 (1196)
... ..+...|..++|+ |||+.|++++.|+ ++++|++..... ...+..+......+.+
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~---~i~vwd~~~~~~--~~~l~~~~~~~~~~~~ 305 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSG---AWLRWNLFANND--YNEISDSTMKLGPKNL 305 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTS---EEEEEEC---------------------CC
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCC---CEEEEECccCCC--CceEeeecCccccEEE
Confidence 000 1123568889987 8999999999999 999999865321 1111110000001111
Q ss_pred ccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCE
Q 000992 328 HPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNC 407 (1196)
Q Consensus 328 sp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~ 407 (1196)
.|+ + +.+.....+..+.|+|...+..
T Consensus 306 ~~~-----------------------------------~-------------------~~~~~~~~~~~~~~~~~~~~~~ 331 (393)
T 4gq1_A 306 LPN-----------------------------------V-------------------QGISLFPSLLGACPHPRYMDYF 331 (393)
T ss_dssp SCS-----------------------------------E-------------------EEECSSCCSSCCEECSSCTTEE
T ss_pred ccc-----------------------------------c-------------------ccccccCcceeEEEccCCCCEE
Confidence 110 0 0011111122233444332245
Q ss_pred EEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEe
Q 000992 408 LAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 408 lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
+++++.||+|+||+..+..+..... .+...|+.++|+|||++||+++++ .+.++.+
T Consensus 332 ~~sgs~Dg~V~lwd~~~~~~~~~~~------------~~~~~V~svafspdG~~LA~as~~---Gv~lvrL 387 (393)
T 4gq1_A 332 ATAHSQHGLIQLINTYEKDSNSIPI------------QLGMPIVDFCWHQDGSHLAIATEG---SVLLTRL 387 (393)
T ss_dssp EEEETTTTEEEEEETTCTTCCEEEE------------ECSSCEEEEEECTTSSEEEEEESS---EEEEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEec------------CCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEE
Confidence 6778889999999998654432211 233579999999999999999874 5666654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-20 Score=216.11 Aligned_cols=272 Identities=8% Similarity=-0.032 Sum_probs=195.2
Q ss_pred ceeEEeeecC---CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIE---QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~---~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+.+++|.++ +..|++++.|+.|..|++ ....... ... +.+| .+.|.+++|+|+++.|++++.||+
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~--~~~~~~~-~~~----~~~h----~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEV--QDSGQTI-PKA----QQMH----TGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEE--CTTSCEE-EEE----EEEC----SSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEc--CCCCcee-EEE----eccc----cCCEEEEEECcCCCEEEEEcCCCc
Confidence 8999999999 589999999999999999 4322111 011 3333 368999999999999999999999
Q ss_pred EEEEECCCCeEEEeeeecCcEEEEEE--CCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGNATEVVGRVEGGVRFISP--SPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~~~~I~~~aw--SPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|++||..+++....-.|.+.|.+++| +|||++|++++.|++|.+|+ +...++.....+ ..
T Consensus 110 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~ 172 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-----------------ER 172 (368)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS-----------------SC
T ss_pred EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC-----------------CC
Confidence 99999998876645557899999999 99999999999999999987 334433332221 24
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE--eccCCCceeEEEEcCCCCe----EEEEecCCCCCCC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGAN----IAAVYDRKSENKC 249 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~--~e~~~~~v~slawsPdG~~----IAs~s~d~~~~~~ 249 (1196)
+.++.+.++ .++ +++ .++.+++|+...+..... ..+.......+++.+++.. +++++.+
T Consensus 173 ~~~~~~~~~--~~~-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------ 237 (368)
T 3mmy_A 173 CYCADVIYP--MAV-VAT------AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE------ 237 (368)
T ss_dssp EEEEEEETT--EEE-EEE------GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT------
T ss_pred ceEEEecCC--eeE-EEe------CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC------
Confidence 566777765 454 343 357899999965443322 2334455677777777665 8998886
Q ss_pred CeEEEEeCCCeeE--EEEEeccCCC-----------CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE
Q 000992 250 PSIVFYERNGLER--SSFDINEQID-----------STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR 316 (1196)
Q Consensus 250 ~~V~~~e~nGl~~--~~f~l~~~~~-----------~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~ 316 (1196)
..|++|+.+.... ..+.+..+.. ..|.+++|||||++||+++.|+ .|++|++.+... .+.+.
T Consensus 238 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd~~~~~~--~~~~~ 312 (368)
T 3mmy_A 238 GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG---RFSFWDKDARTK--LKTSE 312 (368)
T ss_dssp SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEE--EEECC
T ss_pred CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC---eEEEEECCCCcE--EEEec
Confidence 4799999654311 1112222211 2699999999999999999999 999999998653 23443
Q ss_pred EecCCcEEEEEccCCCceEEEEecCC
Q 000992 317 YLRRDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 317 ~~~~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.+......+.|+|++.. |++++.+|
T Consensus 313 ~~~~~v~~~~~s~~g~~-l~~~s~d~ 337 (368)
T 3mmy_A 313 QLDQPISACCFNHNGNI-FAYASSYD 337 (368)
T ss_dssp CCSSCEEEEEECTTSSC-EEEEECCC
T ss_pred CCCCCceEEEECCCCCe-EEEEeccc
Confidence 33333488999999876 66666554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=244.59 Aligned_cols=335 Identities=12% Similarity=0.062 Sum_probs=206.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC---cEEEEEECCCCCEEEEEeCC---------ceEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG---GVRFISPSPDGDLLGVTTGF---------GQILV 142 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~---~I~~~awSPDg~~LA~~s~d---------~tV~l 142 (1196)
..+.+++|||||+.+++ +.||+|++||..+++.. +...+.. +|.+++|||||+.||+++.+ ++|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 35788999999997766 78999999999987654 4444333 49999999999999999875 56777
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
|+...... ..+.... ++...+..++|||||++||+ ++ ++.|++||..+|+.......+.
T Consensus 96 ~d~~~~~~--~~l~~~~-----------~~~~~~~~~~~SPdG~~la~-~~-------~~~i~~~~~~~g~~~~~~~~~~ 154 (723)
T 1xfd_A 96 SKIPHGDP--QSLDPPE-----------VSNAKLQYAGWGPKGQQLIF-IF-------ENNIYYCAHVGKQAIRVVSTGK 154 (723)
T ss_dssp EESSSCCC--EECCCTT-----------CCSCCCSBCCBCSSTTCEEE-EE-------TTEEEEESSSSSCCEEEECCCB
T ss_pred EECCCCce--EeccCCc-----------cccccccccEECCCCCEEEE-EE-------CCeEEEEECCCCceEEEecCCC
Confidence 75321111 1111111 23344678999999999994 44 3789999998888776655433
Q ss_pred Cc------------------eeEEEEcCCCCeEEEEecCCCC----------------------------CCCCeEEEEe
Q 000992 223 FM------------------GAVLEWMPSGANIAAVYDRKSE----------------------------NKCPSIVFYE 256 (1196)
Q Consensus 223 ~~------------------v~slawsPdG~~IAs~s~d~~~----------------------------~~~~~V~~~e 256 (1196)
.. +.+++|||||+.||+++.+.+. ....+|.+|+
T Consensus 155 ~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d 234 (723)
T 1xfd_A 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (723)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred CCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence 22 2689999999999999865310 0112688888
Q ss_pred CCCeeEEEEEeccC-----CCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCEEEEEEEEEEecCCc-----EEE
Q 000992 257 RNGLERSSFDINEQ-----IDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNHWYLKYEIRYLRRDG-----IRF 325 (1196)
Q Consensus 257 ~nGl~~~~f~l~~~-----~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~wylkq~l~~~~~~~-----~~v 325 (1196)
..+.... ..+..+ +...+.+++|||||++|++++.... ...|.+|+..+... ...+..+.... ..+
T Consensus 235 ~~~~~~~-~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 235 LNGPTHD-LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC--TKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp SSSSCCC-EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEEEECSSCCCCCCCCC
T ss_pred CCCCcee-EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc--eEEEEeccCCEEeccCCCc
Confidence 7553310 123221 1356899999999999988765432 23799999887653 22222221111 267
Q ss_pred EEccCCCceEEEE-e-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee-ccccCCCCCceeeeec-CCCCEEE-EEEe
Q 000992 326 MWHPTKPLQLICW-T-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTP-LSLSLMPPPMYLFSLK-FPTAVTE-MAFY 400 (1196)
Q Consensus 326 ~Wsp~~~~~L~~~-~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~-l~~~~vpppm~~~~l~-~~~~V~~-Vafs 400 (1196)
.|+|++.. |.+. + .+|... .. ..|.+++ ..... + -+...+. ....+.. ++||
T Consensus 312 ~~spdg~~-l~~~~~~~~~~~~-----------~~--------~~l~~~d~~~~~~-~--~~~~~l~~~~~~~~~~~~~s 368 (723)
T 1xfd_A 312 VFSKDGRK-FFFIRAIPQGGRG-----------KF--------YHITVSSSQPNSS-N--DNIQSITSGDWDVTKILAYD 368 (723)
T ss_dssp EECTTSCS-EEEEEEECCSSSS-----------CE--------EEEEEECSSCCSS-S--CCCCBSCCSSSCEEEEEEEE
T ss_pred eEcCCCCe-EEEEEecccCCCc-----------ce--------eEEEEEeccCCCC-c--cceeEeecCCeEEEeeeEEc
Confidence 89999876 4443 2 233000 00 0122222 11110 0 0011121 2233544 6999
Q ss_pred cCCCCCEEEEEECC---CcEEEEeCCCCC--ccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCC
Q 000992 401 SKSSKNCLAAILSD---GCLCVVDLPAPD--MLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGP 469 (1196)
Q Consensus 401 pdg~~~~lAs~~~d---g~v~lw~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~ 469 (1196)
||| +.|+..+.+ ++++||+++... ....+.+. + .+...+..++|+|||+.++....+.
T Consensus 369 pdg--~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~-------~--~~~~~~~~~~~spdg~~l~~~~~~~ 431 (723)
T 1xfd_A 369 EKG--NKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD-------L--VENCTYFSASFSHSMDFFLLKCEGP 431 (723)
T ss_dssp TTT--TEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT-------S--SSSCCCCEEEECTTSSEEEEECCSS
T ss_pred CCC--CEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc-------c--cCCCCeEEEEECCCCCEEEEEccCC
Confidence 999 888776665 789999986421 11111110 0 0234578899999999888765543
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-22 Score=251.58 Aligned_cols=244 Identities=15% Similarity=0.186 Sum_probs=191.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC--CCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME--KEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd--~~~La~as~dG~I 99 (1196)
.+.+++|+++++.|++++.|+.|..|+. ..+... .+.+ +.+| .+.|.+++|+|+ ++.|++++.||+|
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~--~~~~~~-~~~~----l~~h----~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEV--EGETHK-LIDT----LTGH----EGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEE--ETTEEE-EEEE----ECCC----SSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEec--CCCCCc-ccee----ccCC----cCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 7899999999999999999999999998 432221 1111 3334 468999999998 9999999999999
Q ss_pred EEEECCCCe---EEEeeeecCcEEEEEECCC--CCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccccCccccCC
Q 000992 100 LLHSVDGNA---TEVVGRVEGGVRFISPSPD--GDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 100 ~lw~~~~~~---~e~vg~~~~~I~~~awSPD--g~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
++||..++. +.....|.+.|.+++|||+ |+.|++++.||+|++|+..-. ..... .+.+|.
T Consensus 80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~--------------~~~~~~ 145 (753)
T 3jro_A 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--------------IIDAHA 145 (753)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE--------------EEECCS
T ss_pred EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee--------------EeecCC
Confidence 999999875 3344557889999999999 999999999999999873211 11111 122456
Q ss_pred CCeEEEEEcc-------------CCceEEEeeccccccCCCCEEEEEECCCC----cEEEEeccCCCceeEEEEcCC---
Q 000992 174 SFKSPISWRG-------------DGKYFATLSEFCNSSKLHKRLKVWERDSG----TLQASSELKAFMGAVLEWMPS--- 233 (1196)
Q Consensus 174 ~~v~~isWsp-------------DG~~lAsvss~d~~~~~d~~irVWd~~~G----~l~~~~e~~~~~v~slawsPd--- 233 (1196)
..+.+++|+| ||.+|+ +++ .|++|++||..++ .+..+..+|.+.+.+++|+|+
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~-sgs------~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFV-TGG------ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEE-EEE------TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred CceEEEEecCcccccccccccCCCCCEEE-EEE------CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 7889999999 699999 565 4689999998666 566677889999999999999
Q ss_pred CCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEec--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 234 GANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDIN--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 234 G~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|++||+++.|+ .|++|+..... .....+. ..+...|.+++|+|||++||+++.|+ .|++|++..
T Consensus 219 ~~~l~s~s~Dg------~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg---~I~vwd~~~ 285 (753)
T 3jro_A 219 RSYLASVSQDR------TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLWKENL 285 (753)
T ss_dssp SEEEEEEESSS------CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS---CEECCBCCS
T ss_pred CCEEEEEecCC------EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC---EEEEEecCC
Confidence 99999999864 69999965321 0000111 12356799999999999999999999 899999874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=224.22 Aligned_cols=271 Identities=11% Similarity=0.122 Sum_probs=194.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~ 153 (1196)
..|.+++| |++.|++|+.||+|++||..+++. .....|.+.|.+++| ||++||+++.||+|++|+. ....+..
T Consensus 134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~- 208 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT- 208 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE-
T ss_pred CcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE-
Confidence 56888766 899999999999999999988765 355557899999999 8899999999999999873 2322221
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE---EEeccCCCceeEEEE
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ---ASSELKAFMGAVLEW 230 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~---~~~e~~~~~v~slaw 230 (1196)
+.+|...+.+++|++ .+++ +++ .|++|++||..++... ....+|.+.+.+++|
T Consensus 209 ---------------~~~h~~~v~~l~~~~--~~l~-s~s------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 264 (435)
T 1p22_A 209 ---------------LIHHCEAVLHLRFNN--GMMV-TCS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF 264 (435)
T ss_dssp ---------------ECCCCSCEEEEECCT--TEEE-EEE------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE
T ss_pred ---------------EcCCCCcEEEEEEcC--CEEE-Eee------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe
Confidence 225667889999974 4787 565 4689999999777654 567789999999999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
+|++|++++.| ..|++|+.. |..... +.. +...|.+++| ++++|++++.|+ +|++|++.+...
T Consensus 265 --~~~~l~s~~~d------g~i~vwd~~~~~~~~~--~~~-~~~~v~~~~~--~~~~l~~g~~dg---~i~iwd~~~~~~ 328 (435)
T 1p22_A 265 --DDKYIVSASGD------RTIKVWNTSTCEFVRT--LNG-HKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGAC 328 (435)
T ss_dssp --ETTEEEEEETT------SEEEEEETTTCCEEEE--EEC-CSSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCCE
T ss_pred --CCCEEEEEeCC------CeEEEEECCcCcEEEE--EcC-CCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCCCCE
Confidence 89999999986 479999954 433333 332 3567999999 578999999999 999999987542
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC----CCCcee
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM----PPPMYL 385 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v----pppm~~ 385 (1196)
...+..+......+.|+ + ..|.+++.+|.+ ++|++..... +...+.
T Consensus 329 --~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i-------------------------~vwd~~~~~~~~~~~~~~~~ 378 (435)
T 1p22_A 329 --LRVLEGHEELVRCIRFD--N-KRIVSGAYDGKI-------------------------KVWDLVAALDPRAPAGTLCL 378 (435)
T ss_dssp --EEEECCCSSCEEEEECC--S-SEEEEEETTSCE-------------------------EEEEHHHHTSTTSCTTTTEE
T ss_pred --EEEEeCCcCcEEEEEec--C-CEEEEEeCCCcE-------------------------EEEECCCCCCccccccchhe
Confidence 23333333233566662 2 235555555544 3443332111 111233
Q ss_pred eee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 386 FSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 386 ~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.++ .|.+.|.+++| ++ +.|++++.||+|++|++.+.
T Consensus 379 ~~~~~h~~~v~~l~~--~~--~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 379 RTLVEHSGRVFRLQF--DE--FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCCSSCCCCEEE--CS--SCEEECCSSSEEEEEC----
T ss_pred eeccCCCCCeEEEEe--CC--CEEEEEeCCCEEEEEECCCC
Confidence 444 48889999999 66 78999999999999999763
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=247.22 Aligned_cols=258 Identities=15% Similarity=0.148 Sum_probs=187.0
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC--CceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD--GKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD--G~~lA 189 (1196)
..+|.+.|++++|||||++||+++.||+|++|+..... ..... .+.+|.+.|.+++|+|+ |++|+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~--~~~~~-----------~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET--HKLID-----------TLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE--EEEEE-----------EECCCSSCEEEEEECCTTSCSEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC--Cccce-----------eccCCcCceEEEEecCCCCCCEEE
Confidence 44578999999999999999999999999999743111 11111 23366788999999998 99999
Q ss_pred EeeccccccCCCCEEEEEECCCCc--EEEEeccCCCceeEEEEcCC--CCeEEEEecCCCCCCCCeEEEEeCCCe-eEEE
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGT--LQASSELKAFMGAVLEWMPS--GANIAAVYDRKSENKCPSIVFYERNGL-ERSS 264 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~--l~~~~e~~~~~v~slawsPd--G~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~ 264 (1196)
+++ .|++|+|||..+|+ ......+|.+.+.+++|+|+ |+++++++.+ ..|++|+.... ....
T Consensus 72 -s~s------~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 72 -SCS------YDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSP 138 (753)
T ss_dssp -EEE------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCSSSCCCC
T ss_pred -EEe------CCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC------CcEEEEEeecCCCcce
Confidence 565 46899999997776 66677789999999999999 9999999986 47999996432 1111
Q ss_pred EEeccCCCCcEEEEEEcc-------------CCCeeEEEEccCCcceEEEEEecCC--EEEEEEEEEEecCCcEEEEEcc
Q 000992 265 FDINEQIDSTVELLKWNC-------------MSDLLAAVVRFEEYDSVKICFFSNN--HWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSp-------------Dg~~LAs~~~d~~~~~V~lW~~~n~--~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
..+.. +...|.+++|+| ||++|++++.|+ +|++|++.+. .+.....+..+......+.|+|
T Consensus 139 ~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 214 (753)
T 3jro_A 139 IIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP 214 (753)
T ss_dssp EEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred eEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCC---eEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence 22332 356799999999 699999999999 9999998754 2333344444444448899999
Q ss_pred CC--CceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee-eeecCCCCEEEEEEecCCCCC
Q 000992 330 TK--PLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL-FSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 330 ~~--~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~-~~l~~~~~V~~Vafspdg~~~ 406 (1196)
++ +..+.+++.+|.+.+ |+. +....+..... ....|.+.|++++|+|+| +
T Consensus 215 ~~~~~~~l~s~s~Dg~I~i----wd~---------------------~~~~~~~~~~~~~~~~~~~~v~~l~~spdg--~ 267 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCII----WTQ---------------------DNEQGPWKKTLLKEEKFPDVLWRASWSLSG--N 267 (753)
T ss_dssp CCSSSEEEEEEESSSCEEE----EEE---------------------SSSSSCCBCCBSSSSCCSSCCCCEEECTTT--C
T ss_pred CCCCCCEEEEEecCCEEEE----ecC---------------------CCCCCcceeEEeccCCCCCceEEEEEcCCC--C
Confidence 94 445666666666543 332 21110100000 112367889999999999 8
Q ss_pred EEEEEECCCcEEEEeCCCCC
Q 000992 407 CLAAILSDGCLCVVDLPAPD 426 (1196)
Q Consensus 407 ~lAs~~~dg~v~lw~~~~~~ 426 (1196)
.|++++.||+|++|+..+..
T Consensus 268 ~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 268 VLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CEEEECSSSCEECCBCCSSS
T ss_pred EEEEEcCCCEEEEEecCCCC
Confidence 99999999999999998543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=226.33 Aligned_cols=279 Identities=7% Similarity=-0.010 Sum_probs=186.1
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeeccc
Q 000992 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 79 ~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
....+++|+..|++|+.||+|++||..+++.. ... .+.|.+++|+|+ +++++.|++|++|+..... ....+..
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~-~~~~~~~ 113 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI-TILDSKT 113 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEE-EEEETTT
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCce-EEeecCC
Confidence 33456788999999999999999999876542 332 467889999999 9999999999999754211 0001100
Q ss_pred ccCccccccCccccCCCCeEEEEEcc--CCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCC
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRG--DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSG 234 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWsp--DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG 234 (1196)
. +.+. ....+|.+.+.+++|+| +|++|+ +++ .|++|++||..+|+...... .+...+.+++|+|+|
T Consensus 114 ~---~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~-s~s------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 114 N---KVLR-EIEVDSANEIIYMYGHNEVNTEYFI-WAD------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS 182 (343)
T ss_dssp C---CEEE-EEECCCSSCEEEEECCC---CCEEE-EEE------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS
T ss_pred c---ceeE-EeecCCCCCEEEEEcCCCCCCCEEE-EEe------CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC
Confidence 0 0000 00114557799999999 999999 565 46899999998999877664 345578999999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
++||+|+.|+ .|++|+.. |... ...+...+...|.+|+|||||.+||+++ ++ +|++||+.+..-. +
T Consensus 183 ~~lasg~~dg------~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~---~v~iwd~~~~~~~--~ 249 (343)
T 3lrv_A 183 LLLALYSPDG------ILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ---TVVCFDLRKDVGT--L 249 (343)
T ss_dssp CEEEEECTTS------CEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEE-SS---BEEEEETTSSTTC--B
T ss_pred CEEEEEcCCC------EEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEEcCCCCcc--e
Confidence 9999998864 69999954 3322 0134432467899999999999999999 44 6999998764311 0
Q ss_pred EEEE---ecCC--cEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 314 EIRY---LRRD--GIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 314 ~l~~---~~~~--~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
.+.. +... ...+.|+|++.. |.+++. ++.+. +|.+....- . ..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~-l~~~s~~d~~i~-------------------------v~~~~~~~~--~---~~ 298 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKN-MIAYSNESNSLT-------------------------IYKFDKKTK--N---WT 298 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSE-EEEEETTTTEEE-------------------------EEEECTTTC--S---EE
T ss_pred eecccccccccccceEEEECCCCCE-EEEecCCCCcEE-------------------------EEEEccccc--c---eE
Confidence 1110 0000 145889998765 455444 44443 333211100 0 00
Q ss_pred ecCCCCEEEEEEec---CCCCCEEEEEECCCcEEEEeCC
Q 000992 388 LKFPTAVTEMAFYS---KSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 388 l~~~~~V~~Vafsp---dg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
. .++..++|+| ++ +.+++++.||++.++-..
T Consensus 299 ~---~~~~~~~~~~~~~~~--~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 299 K---DEESALCLQSDTADF--TDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp E---EEEEECCC----CCC--CEEEEEEETTEEEEEEEC
T ss_pred e---cCceeEecCcccccc--ceeEEEecCCceEEEEec
Confidence 0 3466778888 76 789999999999888654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=210.78 Aligned_cols=267 Identities=11% Similarity=0.044 Sum_probs=184.2
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEE-EEEeCCceEEEEec-cCceeeeeecccccCcccc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMTH-DWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~V 164 (1196)
..+++++.||+|++||..++++. .+.. ...+.+++|||||+.| ++++.|++|.+|+. ..+.+.....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--------- 72 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--------- 72 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC---------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec-CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC---------
Confidence 45778889999999999987764 4443 4569999999999987 56668999999873 3333332221
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeE-EEEecC
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI-AAVYDR 243 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~I-As~s~d 243 (1196)
...+.+++|+|||++++ +++ ..+++|++||..+|+.......+ ..+.+++|+|+|+.| ++++.+
T Consensus 73 --------~~~v~~~~~spdg~~l~-~~~-----~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~ 137 (391)
T 1l0q_A 73 --------GSSPQGVAVSPDGKQVY-VTN-----MASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGD 137 (391)
T ss_dssp --------SSSEEEEEECTTSSEEE-EEE-----TTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTT
T ss_pred --------CCCccceEECCCCCEEE-EEE-----CCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCC
Confidence 12678999999999887 443 14689999999889888877644 456999999999988 455443
Q ss_pred CCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeE-EEEccCCcceEEEEEecCCEEEEEEEEEEecCC
Q 000992 244 KSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLA-AVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD 321 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LA-s~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~ 321 (1196)
..|.+|+.. |..... +.. ...+..++|+|||+.|+ +++.++ .|++|+..+... ...+.. ...
T Consensus 138 ------~~v~~~d~~~~~~~~~--~~~--~~~~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~~--~~~~~~-~~~ 201 (391)
T 1l0q_A 138 ------KTVSVINTVTKAVINT--VSV--GRSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTNSV--IDTVKV-EAA 201 (391)
T ss_dssp ------TEEEEEETTTTEEEEE--EEC--CSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTEE--EEEEEC-SSE
T ss_pred ------CEEEEEECCCCcEEEE--Eec--CCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCeE--EEEEec-CCC
Confidence 579999954 443332 222 24578999999999884 555666 899999987642 223322 122
Q ss_pred cEEEEEccCCCceEEEEe---cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEE
Q 000992 322 GIRFMWHPTKPLQLICWT---LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMA 398 (1196)
Q Consensus 322 ~~~v~Wsp~~~~~L~~~~---~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Va 398 (1196)
...+.|+|++.. |.+.. .++. +.+|+++.. .....+.....+.+++
T Consensus 202 ~~~~~~~~~g~~-l~~~~~~~~~~~-------------------------v~~~d~~~~-----~~~~~~~~~~~~~~~~ 250 (391)
T 1l0q_A 202 PSGIAVNPEGTK-AYVTNVDKYFNT-------------------------VSMIDTGTN-----KITARIPVGPDPAGIA 250 (391)
T ss_dssp EEEEEECTTSSE-EEEEEECSSCCE-------------------------EEEEETTTT-----EEEEEEECCSSEEEEE
T ss_pred ccceEECCCCCE-EEEEecCcCCCc-------------------------EEEEECCCC-----eEEEEEecCCCccEEE
Confidence 377899998865 44443 2232 233332211 0112333344678999
Q ss_pred EecCCCCCEE-EEEECCCcEEEEeCCCCCcc
Q 000992 399 FYSKSSKNCL-AAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 399 fspdg~~~~l-As~~~dg~v~lw~~~~~~~~ 428 (1196)
|+|+| +.| ++++.|++|++|+..+....
T Consensus 251 ~s~dg--~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 251 VTPDG--KKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp ECTTS--SEEEEEETTTTEEEEEETTTTEEE
T ss_pred EccCC--CEEEEEcCCCCEEEEEECCCCcEE
Confidence 99999 776 66678999999999864333
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=230.97 Aligned_cols=244 Identities=11% Similarity=0.131 Sum_probs=178.5
Q ss_pred CCCEEEEEEccC-CCEEEEEECCCcEEEEECCC-----------CeEEEeeeecCcEEEEEECCCCC-EEEEEeCCceEE
Q 000992 75 GDSITAFDYLME-KEALIVGTSSGLLLLHSVDG-----------NATEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQIL 141 (1196)
Q Consensus 75 ~~~v~~v~~spd-~~~La~as~dG~I~lw~~~~-----------~~~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~ 141 (1196)
.+.|.+++|+|+ +..||+++.+|+|++|+..+ ..+..+..|.+.|.+++|+|++. .|++++.||+|.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 207 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC 207 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence 468999999998 78999999999999999864 22334455788999999999999 999999999999
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCC---cEEEE
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQAS 217 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~ 217 (1196)
+|+..-.......+.. ...+.+|...+.+++|+| ++.+|| +++ .+++|+|||..++ .....
T Consensus 208 vwd~~~~~~~~~~~~~--------~~~~~~h~~~v~~v~~~p~~~~~l~-s~~------~dg~i~i~d~~~~~~~~~~~~ 272 (430)
T 2xyi_A 208 LWDINATPKEHRVIDA--------KNIFTGHTAVVEDVAWHLLHESLFG-SVA------DDQKLMIWDTRNNNTSKPSHT 272 (430)
T ss_dssp EEETTSCCBGGGEEEC--------SEEECCCSSCEEEEEECSSCTTEEE-EEE------TTSEEEEEETTCSCSSSCSEE
T ss_pred EEeCCCCCCCCceecc--------ceeecCCCCCEeeeEEeCCCCCEEE-EEe------CCCeEEEEECCCCCCCcceeE
Confidence 9974321100000000 123446778899999999 677888 454 4799999999766 56666
Q ss_pred eccCCCceeEEEEcCCCC-eEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEcc
Q 000992 218 SELKAFMGAVLEWMPSGA-NIAAVYDRKSENKCPSIVFYERNG--LERSSFDINEQIDSTVELLKWNCMSD-LLAAVVRF 293 (1196)
Q Consensus 218 ~e~~~~~v~slawsPdG~-~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d 293 (1196)
...|.+.+.+++|+|+|+ +||+++.+ ..|++|+... .... .+.. +...|.+|+|+|+|+ +||+++.|
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~d------g~v~vwd~~~~~~~~~--~~~~-h~~~v~~i~~sp~~~~~l~s~~~d 343 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSAD------KTVALWDLRNLKLKLH--SFES-HKDEIFQVQWSPHNETILASSGTD 343 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTCTTSCSE--EEEC-CSSCEEEEEECSSCTTEEEEEETT
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCC------CeEEEEeCCCCCCCeE--Eeec-CCCCEEEEEECCCCCCEEEEEeCC
Confidence 778889999999999998 68898885 4799999543 2222 2222 356899999999995 69999999
Q ss_pred CCcceEEEEEecCCEE------------EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 294 EEYDSVKICFFSNNHW------------YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~w------------ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
+ +|++|++....- .+...+..+......+.|+|+++..++....+|.+.
T Consensus 344 ~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~ 404 (430)
T 2xyi_A 344 R---RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQ 404 (430)
T ss_dssp S---CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred C---cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence 8 899999986210 011122222223488999999886567776677664
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-20 Score=225.03 Aligned_cols=246 Identities=9% Similarity=0.108 Sum_probs=184.4
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccc--------cccceeeccccccccccCCCCCCEEEEEEccCCC-EEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQN--------ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La 91 (1196)
.+.+++|.++ +..|++++.++.|..|++. .. ... .+.+ +.+| .+.|.+++|+|++. .|+
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~--~~~~~~~~~~~~~-~~~~----~~~h----~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYT--KHPSKPEPSGECQ-PDLR----LRGH----QKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGG--GSCSSCCTTCCCC-CSEE----EECC----SSCCCCEEECTTSTTEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECC--CcccccCccccCC-CcEE----ecCC----CCCeEEEEeCCCCCCeEE
Confidence 6888999997 6788888999999999993 31 010 0111 3333 45799999999999 999
Q ss_pred EEECCCcEEEEECCCCe--------EEEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCcc
Q 000992 92 VGTSSGLLLLHSVDGNA--------TEVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~--------~e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
+++.||+|++|+..++. ......|.+.|.+++|+| ++.+||+++.|++|.+|+..-.. .....
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~-~~~~~------- 270 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN-TSKPS------- 270 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC-SSSCS-------
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC-CCcce-------
Confidence 99999999999998621 123445688999999999 78899999999999998732110 00000
Q ss_pred ccccCccccCCCCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCC-CcEEEEeccCCCceeEEEEcCCCC-eEEE
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDS-GTLQASSELKAFMGAVLEWMPSGA-NIAA 239 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~e~~~~~v~slawsPdG~-~IAs 239 (1196)
..+.+|...+.+++|+|+|++ || +++ .+++|+|||..+ +....++..|.+.+.+++|+|+|+ +||+
T Consensus 271 ----~~~~~~~~~v~~i~~~p~~~~~l~-tg~------~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 271 ----HTVDAHTAEVNCLSFNPYSEFILA-TGS------ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ----EEEECCSSCEEEEEECSSCTTEEE-EEE------TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ----eEeecCCCCeEEEEeCCCCCCEEE-EEe------CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 012256678899999999984 66 555 468999999866 566778888999999999999995 6888
Q ss_pred EecCCCCCCCCeEEEEeCCCee-------------EEEEEeccCCCCcEEEEEEccCCC-eeEEEEccCCcceEEEEEec
Q 000992 240 VYDRKSENKCPSIVFYERNGLE-------------RSSFDINEQIDSTVELLKWNCMSD-LLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~-------------~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++.++ .|++|+.+... .-.+.+. .+...|.+++|+|++. +||+++.|+ +|++|++.
T Consensus 340 ~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg---~i~iw~~~ 409 (430)
T 2xyi_A 340 SGTDR------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDN---IMQVWQMA 409 (430)
T ss_dssp EETTS------CCEEEEGGGTTCCCCHHHHHHCCTTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTS---EEEEEEEC
T ss_pred EeCCC------cEEEEeCCCCccccCccccccCCcceEEEcC-CCCCCceEEEECCCCCCEEEEEECCC---CEEEeEcc
Confidence 88764 69999964310 1112222 2356799999999999 999999999 99999987
Q ss_pred CC
Q 000992 306 NN 307 (1196)
Q Consensus 306 n~ 307 (1196)
+.
T Consensus 410 ~~ 411 (430)
T 2xyi_A 410 EN 411 (430)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=228.81 Aligned_cols=251 Identities=11% Similarity=-0.013 Sum_probs=156.8
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--------CCCEEEEEECCCcE
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--------EKEALIVGTSSGLL 99 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--------d~~~La~as~dG~I 99 (1196)
+.+++..|.+++.|+.|..||. ..++.... . .-..+.+| .+.|.+|+|+| |++.||+++.|++|
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~--~~~~~~~~-~-~~~~~~gH----~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIIT--KNETIITQ-H-VLGGKSGH----HNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEE--ETTEEEEE-E-EECTTTSC----SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred cCCCCCEEEEEeCCCcEEEEEC--CCCcccee-e-eecccCCC----CCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 3455667889999999999998 44432110 0 00114445 46899999998 89999999999999
Q ss_pred EEEECCCCe-EEEeeeecCcEEEEEECCCCC-EEEEEeCCceEEEEecc-CceeeeeecccccCc-cccc--------cC
Q 000992 100 LLHSVDGNA-TEVVGRVEGGVRFISPSPDGD-LLGVTTGFGQILVMTHD-WDLLYENPLEELAEG-FDVH--------EP 167 (1196)
Q Consensus 100 ~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~-~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~-~~Vs--------~t 167 (1196)
+|||..++. +...-.|...|.+++|+|++. +||+++.|++|++|+.. .....+...+..... ..++ ..
T Consensus 169 ~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp EEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred EEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 999987643 333334578899999999985 79999999999998632 111111110000000 0000 11
Q ss_pred ccccCCCCeEEEEEc-cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc---------------
Q 000992 168 ELSSSFSFKSPISWR-GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM--------------- 231 (1196)
Q Consensus 168 qf~~~~~~v~~isWs-pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws--------------- 231 (1196)
...+|.+.+.++.|+ |||++++ +++ .+++++|||..++.....+..+.+.+..+.++
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~-s~s------~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGIL-AMC------KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEE-EEC------TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred ecccccccceeeeeecCCCCEEE-EEe------CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence 122677889999987 8999999 565 46899999997777665554444433333333
Q ss_pred ---C--CCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 232 ---P--SGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 232 ---P--dG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
| ++.++|+++.| ..|++|+.. |.....+ . .+...|.+|+|||||++||+++.++ +.||.+.
T Consensus 322 ~~~~~~~~~~~~sgs~D------g~V~lwd~~~~~~~~~~--~-~~~~~V~svafspdG~~LA~as~~G----v~lvrL~ 388 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQH------GLIQLINTYEKDSNSIP--I-QLGMPIVDFCWHQDGSHLAIATEGS----VLLTRLM 388 (393)
T ss_dssp EECSSCTTEEEEEETTT------TEEEEEETTCTTCCEEE--E-ECSSCEEEEEECTTSSEEEEEESSE----EEEEEEG
T ss_pred EEccCCCCEEEEEECCC------CEEEEEECCCCcEEEEe--c-CCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEEe
Confidence 3 33456777665 579999954 4333322 1 2345799999999999999999887 8888765
Q ss_pred C
Q 000992 306 N 306 (1196)
Q Consensus 306 n 306 (1196)
.
T Consensus 389 g 389 (393)
T 4gq1_A 389 G 389 (393)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=239.10 Aligned_cols=417 Identities=10% Similarity=-0.015 Sum_probs=255.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----- 96 (1196)
.+...+|. ++.|++++.. .|+.|++ ..++. .. +..+ .+.+.+++|||||+.||+++.+
T Consensus 16 ~~~~~~~S--~~~iaf~~~~-~l~~~~~--~gg~~-~~-------lt~~----~~~v~~~~~SPDG~~la~~s~~~~~~~ 78 (1045)
T 1k32_A 16 LLLNPDIH--GDRIIFVCCD-DLWEHDL--KSGST-RK-------IVSN----LGVINNARFFPDGRKIAIRVMRGSSLN 78 (1045)
T ss_dssp CCEEEEEE--TTEEEEEETT-EEEEEET--TTCCE-EE-------EECS----SSEEEEEEECTTSSEEEEEEEESTTCC
T ss_pred eEeCcEEe--CCEEEEEECC-cEEEEEC--CCCcE-EE-------eeeC----CCcccCeEECCCCCEEEEEEeeccCCC
Confidence 56677777 4688888774 6999998 44432 11 3333 3579999999999999988754
Q ss_pred -CcEEEEECCCCeEEEeeeecCcE-------EEEEECCCCCEEEEEeCC----c--eEEEEeccCceeeeeecccccCcc
Q 000992 97 -GLLLLHSVDGNATEVVGRVEGGV-------RFISPSPDGDLLGVTTGF----G--QILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 97 -G~I~lw~~~~~~~e~vg~~~~~I-------~~~awSPDg~~LA~~s~d----~--tV~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
++|.+|+..+++...+..|...+ .+++|||||+++++++.+ + .|.+|+....... .+..
T Consensus 79 ~~~i~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~--~l~~----- 151 (1045)
T 1k32_A 79 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV--PLNL----- 151 (1045)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE--ECCS-----
T ss_pred CCeEEEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE--EecC-----
Confidence 37999999998877666667778 999999999977776644 3 3544432211111 1111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
.....++||| | +++ +++.+.. -.++...+||... .|++.. ..+|.+.+.+++|+|+ .
T Consensus 152 -----------~~~~~~~~sp-G-~l~-~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~-l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 152 -----------GPATHILFAD-G-RRV-IGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKK-IVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp -----------CSCSEEEEET-T-EEE-EEESCSCCTTSTTCCSTTCCEEEEEEETTEEEE-EECCSSCCEEEEEETT-E
T ss_pred -----------CCcceeeeCC-C-EEE-EeccCCCccccccccCCCcCCEEEECCCCCeEE-CcCCCCcccceEEeCC-E
Confidence 1124678999 9 777 5532110 0123456666432 355444 4778999999999999 5
Q ss_pred eEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE
Q 000992 236 NIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY 313 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq 313 (1196)
++++++.+. .+.+|. .+|.... .+..+ ..+..++|||||+.||.+. ++ .|.+|+..... +.
T Consensus 216 l~~~~~~dg------~~~l~~~~~~g~~~~--~l~~~--~~~~~~~~SpDG~~la~~~-~~---~i~~~d~~~~~--l~- 278 (1045)
T 1k32_A 216 IYFITDIDG------FGQIYSTDLDGKDLR--KHTSF--TDYYPRHLNTDGRRILFSK-GG---SIYIFNPDTEK--IE- 278 (1045)
T ss_dssp EEEEECTTS------SCEEEEEETTSCSCE--ECCCC--CSSCEEEEEESSSCEEEEE-TT---EEEEECTTTCC--EE-
T ss_pred EEEEEeccC------ceEEEEEeCCCCcce--EecCC--CCcceeeEcCCCCEEEEEe-CC---EEEEecCCceE--ee-
Confidence 555555432 355564 4443222 22222 2356789999999999985 55 79999984322 11
Q ss_pred EEEE-----------ecCCcEEEEEc-cCCCceEEEEecCCcEEEEE---------------EEEeeecCC-CeeEEEEc
Q 000992 314 EIRY-----------LRRDGIRFMWH-PTKPLQLICWTLDGQITTYN---------------FIWTTAVME-NSTALVID 365 (1196)
Q Consensus 314 ~l~~-----------~~~~~~~v~Ws-p~~~~~L~~~~~~g~~~~~~---------------~~~~~~~~d-~~~v~viD 365 (1196)
.+.. +......+.|| |++.. |.+.. ++.+..++ ..+.+.++| ..++.+.+
T Consensus 279 ~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~-la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l~~~s~ 356 (1045)
T 1k32_A 279 KIEIGDLESPEDRIISIPSKFAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR 356 (1045)
T ss_dssp ECCCCCCCBCCSEEEECGGGGEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET
T ss_pred eeccCcccccccccccccccceeeecCCCCCE-EEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeEEEEEC
Confidence 2211 00123678999 99865 44443 34332211 111122221 12344455
Q ss_pred CCEEE-EeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecc
Q 000992 366 GSKIL-VTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS 443 (1196)
Q Consensus 366 g~~l~-lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~ 443 (1196)
...+. ++++..... ..+ .+...+.+++||||| +.||+++.+++|++|++.+........
T Consensus 357 ~~~l~~~~d~~~~~~------~~l~~~~~~~~~~~~SpDG--~~la~~~~~~~v~~~d~~tg~~~~~~~----------- 417 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKA------EKFEENLGNVFAMGVDRNG--KFAVVANDRFEIMTVDLETGKPTVIER----------- 417 (1045)
T ss_dssp TEEEEEEEETTTCCE------EECCCCCCSEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEE-----------
T ss_pred CCceEEEEECCCCCc------eEecCCccceeeeEECCCC--CEEEEECCCCeEEEEECCCCceEEecc-----------
Confidence 55565 666543211 122 456789999999999 899999999999999997643321111
Q ss_pred cccCCcEEEEEEecCCeEEEEEecCC--------CCceEEEEeeccCCccccchhhhhhhhcccccccccccccccceee
Q 000992 444 ETAFGSVIHLIWLGSHLLLSVSHHGP--------RHSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLLTCAGWHAKV 515 (1196)
Q Consensus 444 ~~~~~~v~~l~~~~d~~lla~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1196)
.+...+..++|+|||++|++++.+. ...+.+|++. + .. .
T Consensus 418 -~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~--~----------------------------g~--~ 464 (1045)
T 1k32_A 418 -SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME--G----------------------------RK--I 464 (1045)
T ss_dssp -CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT--T----------------------------TE--E
T ss_pred -CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC--C----------------------------Cc--E
Confidence 2334678899999999888776532 2456666551 1 01 1
Q ss_pred eeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEE
Q 000992 516 STQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEY 550 (1196)
Q Consensus 516 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~ 550 (1196)
.........+..+.+++ +++.+++...++....|
T Consensus 465 ~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 465 FAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp EECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEE
T ss_pred EEeeCCCcccCCceEcC-CCCEEEEEecccCCcCc
Confidence 11223344566677888 88888888776655555
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=239.08 Aligned_cols=348 Identities=12% Similarity=0.115 Sum_probs=214.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CC-----cEEEEecccccccccceeeccccccccccCCC-------------------C-
Q 000992 22 ILQFSALDIEQNRLFFASS-AN-----NIYSAQLSSFQNERASIKTAISAEIEHIDLEP-------------------G- 75 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~-----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~- 75 (1196)
.+..++|.+|+..|++++. ++ .|+.||+ .+++.. .+.. .....| +
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~--~~g~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI--GSGQTR-LLVD------SKVVLPGTETLSDEEKARRERQRIAAM 108 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEET--TTCCEE-EEEC------GGGTC--------------------CC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEEC--CCCcee-Eccc------hhhcccccccccchhhhhhhhhhhccc
Confidence 5788999999999999987 76 7999998 444431 1111 010000 0
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC---eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN---ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~---~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
..|.+++|||||+.|++++. ++|.+||..++ .+..+..+...+.+++|||||+.||+++. ++|.+|+.......
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~- 185 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQM- 185 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEE-
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEE-
Confidence 23788999999999999986 99999999987 66544555788999999999999999985 58988874322111
Q ss_pred eecccccCccccccC--cc--ccCCCCeEEEEEccCCceEEEeecccccc---------------------------CCC
Q 000992 153 NPLEELAEGFDVHEP--EL--SSSFSFKSPISWRGDGKYFATLSEFCNSS---------------------------KLH 201 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~t--qf--~~~~~~v~~isWspDG~~lAsvss~d~~~---------------------------~~d 201 (1196)
.+.... ...+... .| ......+..++|||||++|| +++.+... ...
T Consensus 186 -~~~~~~-~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~-~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 -QLTADG-STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIA-YARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp -ECCCCC-CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEE-EEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred -EeccCC-ccceeccccceeeeeccccccceEECCCCCEEE-EEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 111110 0000000 00 00011246799999999999 55433200 011
Q ss_pred CEEEEEECCC-CcEEEEec--cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCC---cE
Q 000992 202 KRLKVWERDS-GTLQASSE--LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDS---TV 275 (1196)
Q Consensus 202 ~~irVWd~~~-G~l~~~~e--~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~---~V 275 (1196)
..|++||..+ |+...... ++...+.+++| |||+.||+++.+.. .....|.+|+..+..... .+..+... .+
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-QKKLDLVEVTLASNQQRV-LAHETSPTWVPLH 339 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-SSEEEEEEEETTTCCEEE-EEEEECSSCCCCC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-CCeEEEEEEECCCCceEE-EEEcCCCCcCCcC
Confidence 2788999977 87766543 36677899999 99999998765321 124678889865322221 12222222 34
Q ss_pred EEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEE-EEccCCCceEEEEecCC--cEEEEEEEE
Q 000992 276 ELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRF-MWHPTKPLQLICWTLDG--QITTYNFIW 351 (1196)
Q Consensus 276 ~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v-~Wsp~~~~~L~~~~~~g--~~~~~~~~~ 351 (1196)
..++|||||++++++..++ +++||.+. +.. . ..+..+......+ .|+|++...+.....++ .+. .|
T Consensus 340 ~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~--~-~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~----l~ 409 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTG---FQHLYRIDSKGK--A-AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQ----IY 409 (741)
T ss_dssp SCCEECTTSCEEEEECTTS---SCEEEEECSSSC--E-EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBE----EE
T ss_pred CceEECCCCeEEEEecCCC---ccEEEEEcCCCC--e-eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEE----EE
Confidence 6899999999988888877 68888765 222 1 2222221222444 59999875333333332 222 22
Q ss_pred eeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC----CcEEEEeCCC
Q 000992 352 TTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD----GCLCVVDLPA 424 (1196)
Q Consensus 352 ~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d----g~v~lw~~~~ 424 (1196)
.+.. +|.. ...+.....+.+++||||| +.|+...++ ..+.+|+..+
T Consensus 410 ~~~~---------~g~~----------------~~~l~~~~~~~~~~~spdg--~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 410 AVPL---------QGGQ----------------PQRLSKAPGMHSASFARNA--SVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEET---------TCCC----------------CEECCCSCSEEEEEECTTS--SEEEEEEEETTEEEEEEEEETTS
T ss_pred EEEc---------CCCC----------------eeecccCCCceEEEECCCC--CEEEEEecCCCCCCeEEEEEcCC
Confidence 2211 1211 1223334568899999999 788766544 4677777653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.4e-20 Score=217.22 Aligned_cols=257 Identities=11% Similarity=0.040 Sum_probs=180.2
Q ss_pred CCEEEEEeCC------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC---cEEEE
Q 000992 32 QNRLFFASSA------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG---LLLLH 102 (1196)
Q Consensus 32 ~~~l~~~s~~------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG---~I~lw 102 (1196)
+..+++++.+ +.|+.||. ..+.. .. +..+ .+.|.+++|||||+.|++++.++ +|++|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~--~g~~~--~~------l~~~----~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~ 208 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDY--DGYNQ--FV------VHRS----PQPLMSPAWSPDGSKLAYVTFESGRSALVIQ 208 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEET--TSCSC--EE------EEEE----SSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred CCEEEEEEecCCCCccceEEEEcC--CCCCC--EE------EeCC----CCcceeeEEcCCCCEEEEEEecCCCcEEEEE
Confidence 5566666543 68999998 43322 11 3333 35799999999999999999886 99999
Q ss_pred ECCCCeEEEeeeecCcEEEEEECCCCCEEE-EEeCCce--EEEEeccCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 103 SVDGNATEVVGRVEGGVRFISPSPDGDLLG-VTTGFGQ--ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 103 ~~~~~~~e~vg~~~~~I~~~awSPDg~~LA-~~s~d~t--V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
|..+++...+..+.+.+.+++|||||+.|| +++.++. |.+|+....... .+ ..+...+.++
T Consensus 209 d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~--~l--------------~~~~~~~~~~ 272 (415)
T 2hqs_A 209 TLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR--QV--------------TDGRSNNTEP 272 (415)
T ss_dssp ETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EC--------------CCCSSCEEEE
T ss_pred ECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE--eC--------------cCCCCcccce
Confidence 999987765555678899999999999999 4555554 777653221111 11 1334567899
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
+|+|||++|+ +++.+ .+...|.+||..+|+... ...+...+.+++|||||++||+++.+.. ...|.+|+..+
T Consensus 273 ~~spdg~~l~-~~s~~---~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~ 344 (415)
T 2hqs_A 273 TWFPDSQNLA-FTSDQ---AGRPQVYKVNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLAT 344 (415)
T ss_dssp EECTTSSEEE-EEECT---TSSCEEEEEETTSSCCEE-CCCSSSEEEEEEECTTSSEEEEEEECSS---CEEEEEEETTT
T ss_pred EECCCCCEEE-EEECC---CCCcEEEEEECCCCCEEE-EecCCCcccCeEECCCCCEEEEEECcCC---ceEEEEEECCC
Confidence 9999999999 45421 123478889997776543 3345567889999999999999887532 45799999765
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
.... .+..+ ..+.+++|||||+.|++++.++....|.+|++.+.. .+.+..+......++|+|+...
T Consensus 345 ~~~~--~l~~~--~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~---~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 345 GGVQ--VLSST--FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF---KARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp CCEE--ECCCS--SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---EEECCCSSSEEEEEEECCCCCC
T ss_pred CCEE--EecCC--CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc---EEEeeCCCCCCcCCcccccccc
Confidence 3332 23322 378999999999999999987644479999987543 2233332223488999998643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=223.04 Aligned_cols=350 Identities=11% Similarity=-0.003 Sum_probs=224.0
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEEC-
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSV- 104 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~- 104 (1196)
.++|+++..+.+.+.++.|..||. .+++. +.+++. +..+..++|+|||+.|++++.||+|.+||.
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~--~t~~~---~~~i~~---------g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDG--DSKKI---VKVIDT---------GYAVHISRMSASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEET--TTCCE---EEEEEC---------STTEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred cccCCCCEEEEEEcCCCeEEEEEC--CCceE---EEEEec---------CcccceEEECCCCCEEEEECCCCeEEEEECc
Confidence 358888765555677888999998 55554 222221 124889999999999999999999999999
Q ss_pred -CCCeEE-EeeeecCcEEEEEECC----CCCEEEEEe-CCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 105 -DGNATE-VVGRVEGGVRFISPSP----DGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 105 -~~~~~e-~vg~~~~~I~~~awSP----Dg~~LA~~s-~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.++++. .+. +..++..++||| ||++|++++ .+++|.+|+ ..++++..+...... +....|+ ....+
T Consensus 209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~----~~~~~~~-~~~~v 282 (543)
T 1nir_A 209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VDTQTYH-PEPRV 282 (543)
T ss_dssp SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SSSCCEE-SCCCE
T ss_pred CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc----cCccccc-cCCce
Confidence 666543 333 245689999999 999999998 489999996 445555544432211 0000111 12367
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|.++|||..+. ++. .++++|.+||..+++... +.-++......++|+|||+++.++... ..+|.+|
T Consensus 283 ~~i~~s~~~~~~~-vs~-----~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~ 351 (543)
T 1nir_A 283 AAIIASHEHPEFI-VNV-----KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVI 351 (543)
T ss_dssp EEEEECSSSSEEE-EEE-----TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEE
T ss_pred EEEEECCCCCEEE-EEE-----CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEE
Confidence 8999999998777 454 246899999997765433 122345567899999999977665543 3579999
Q ss_pred eC-CCeeEEEEEec-cCCCCcEEEEEEccC-CCeeEEEE-ccCCcceEEEEEecC-----CEEEEEEEEEEecCCcEEEE
Q 000992 256 ER-NGLERSSFDIN-EQIDSTVELLKWNCM-SDLLAAVV-RFEEYDSVKICFFSN-----NHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 256 e~-nGl~~~~f~l~-~~~~~~V~~laWSpD-g~~LAs~~-~d~~~~~V~lW~~~n-----~~wylkq~l~~~~~~~~~v~ 326 (1196)
+. +|.....+... .++.+....+ ++|+ |.++|++. .++ +|.+|++.. ..|...+++..+......+.
T Consensus 352 D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~---~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 352 DSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp ETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred ECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc---eEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 95 45544433321 2233333333 4677 77777765 456 899999976 22666778876544447899
Q ss_pred EccCCCceEEEEecCCcEEEEEEEEeeecC--CCeeEEEEcCCEE----EEeecccc-CCCCCceeeeecCCCCEEEEEE
Q 000992 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVM--ENSTALVIDGSKI----LVTPLSLS-LMPPPMYLFSLKFPTAVTEMAF 399 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~--d~~~v~viDg~~l----~lt~l~~~-~vpppm~~~~l~~~~~V~~Vaf 399 (1196)
+||+++. |.+.+.-+ ++ ....+.|+|-.+. ...|+..| .++ ++...|.+++|
T Consensus 428 ~~pdg~~-l~v~~~~~------------~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~--------~~~~~~~~~~~ 486 (543)
T 1nir_A 428 THPKSSH-LYVDTTFN------------PDARISQSVAVFDLKNLDAKYQVLPIAEWADLG--------EGAKRVVQPEY 486 (543)
T ss_dssp CCTTCCE-EEECCTTC------------SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCC--------SSCCEEEEEEE
T ss_pred cCCCCCc-EEEecCCC------------CCcccCceEEEEECCCCCCCeEEeechhhcccC--------CCCCceEeccC
Confidence 9999875 44433100 10 0123334433221 11111110 000 23567999999
Q ss_pred ecCCCCCEEEEEE-----CCCcEEEEeCCCCCccccccC
Q 000992 400 YSKSSKNCLAAIL-----SDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 400 spdg~~~~lAs~~-----~dg~v~lw~~~~~~~~~~~~g 433 (1196)
+||| +.+.+.. .|++|.+||..+..+..++.+
T Consensus 487 ~~~g--~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 487 NKRG--DEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp CSSS--SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCC--CEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 9999 7776552 379999999987655544443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=219.48 Aligned_cols=307 Identities=13% Similarity=0.056 Sum_probs=202.3
Q ss_pred CEEEEEEccCCC-EEEEEE----CCC----cEEEEEC--CCCeEE---EeeeecCcEEEEEECC--------------CC
Q 000992 77 SITAFDYLMEKE-ALIVGT----SSG----LLLLHSV--DGNATE---VVGRVEGGVRFISPSP--------------DG 128 (1196)
Q Consensus 77 ~v~~v~~spd~~-~La~as----~dG----~I~lw~~--~~~~~e---~vg~~~~~I~~~awSP--------------Dg 128 (1196)
.|....|+++|. .+++++ .+| +|+|||. .+++.. ....|...+..++|+| .+
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 577788999886 444665 578 9999999 776532 2344567788888886 37
Q ss_pred CEEEEEeCC------ceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCC
Q 000992 129 DLLGVTTGF------GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHK 202 (1196)
Q Consensus 129 ~~LA~~s~d------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~ 202 (1196)
..||+++.+ ++|.+|+.+....... .+|...+.+++|||||++|| .++.+ .++.
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l----------------~~~~~~v~~~~~Spdg~~la-~~s~~---~~~~ 203 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVV----------------HRSPQPLMSPAWSPDGSKLA-YVTFE---SGRS 203 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEE----------------EEESSCEEEEEECTTSSEEE-EEECT---TSSC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEE----------------eCCCCcceeeEEcCCCCEEE-EEEec---CCCc
Confidence 788888765 7999987543322211 13445789999999999999 45433 1346
Q ss_pred EEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEE-EEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEc
Q 000992 203 RLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA-AVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWN 281 (1196)
Q Consensus 203 ~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IA-s~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS 281 (1196)
+|++||..+|+... ...+.+.+.+++|||||+.|| +++.+. ...|.+|+..+.... .+.. +...+.+++||
T Consensus 204 ~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~--~l~~-~~~~~~~~~~s 275 (415)
T 2hqs_A 204 ALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIR--QVTD-GRSNNTEPTWF 275 (415)
T ss_dssp EEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEE--ECCC-CSSCEEEEEEC
T ss_pred EEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEE--eCcC-CCCcccceEEC
Confidence 99999998888764 445677899999999999998 444443 367999997543322 2332 34579999999
Q ss_pred cCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecC-CcEEEEEEEEeeecCCCee
Q 000992 282 CMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD-GQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 282 pDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~-g~~~~~~~~~~~~~~d~~~ 360 (1196)
|||+.|++++.+.+...|.+|+..+... ..+..+......+.|+|++.. |++...+ |..
T Consensus 276 pdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~~-l~~~~~~~g~~---------------- 335 (415)
T 2hqs_A 276 PDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKF-MVMVSSNGGQQ---------------- 335 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSE-EEEEEECSSCE----------------
T ss_pred CCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCCE-EEEEECcCCce----------------
Confidence 9999999988643223577778776532 122222222267899999875 4443322 211
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCC---cEEEEeCCCCCccccccCCcee
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG---CLCVVDLPAPDMLEDLEGTEFV 437 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg---~v~lw~~~~~~~~~~~~g~~~~ 437 (1196)
.|.+|++....+ ..+.....+.+++|+||| +.|++++.++ .|.+|++++. ....+.+
T Consensus 336 -------~i~~~d~~~~~~------~~l~~~~~~~~~~~spdg--~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~~---- 395 (415)
T 2hqs_A 336 -------HIAKQDLATGGV------QVLSSTFLDETPSLAPNG--TMVIYSSSQGMGSVLNLVSTDGR-FKARLPA---- 395 (415)
T ss_dssp -------EEEEEETTTCCE------EECCCSSSCEEEEECTTS--SEEEEEEEETTEEEEEEEETTSC-CEEECCC----
T ss_pred -------EEEEEECCCCCE------EEecCCCCcCCeEEcCCC--CEEEEEEcCCCccEEEEEECCCC-cEEEeeC----
Confidence 223333321110 112212368899999999 8999888877 7999998743 2212222
Q ss_pred eeeecccccCCcEEEEEEecCC
Q 000992 438 VEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 438 ~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
+.+.|+.++|+|.-
T Consensus 396 --------~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 396 --------TDGQVKFPAWSPYL 409 (415)
T ss_dssp --------SSSEEEEEEECCCC
T ss_pred --------CCCCCcCCcccccc
Confidence 34579999999953
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-20 Score=211.74 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=186.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I~ 100 (1196)
.+.+++|++|+..|+++++++ +..|+. ........ .. + ..+..++++++++.++ +++.||+|+
T Consensus 21 ~V~~v~fs~dg~~la~g~~~~-~~iw~~--~~~~~~~~--------~~--~---~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 21 PVTDYEFNQDQSCLILSTLKS-FEIYNV--HPVAHIMS--------QE--M---RHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSE-EEEEEE--TTEEEEEE--------EE--C---SCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred ceEEEEECCCCCEEEEEcCCE-EEEEec--CCcceeee--------ee--c---CCeEEEEEcCCCCEEEEEECCccEEE
Confidence 789999999999999888775 789998 33322100 00 1 2467788899999885 466779999
Q ss_pred EEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC--ceeeeeecccccCccccccCccccCCCCeE
Q 000992 101 LHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW--DLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~--d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
+||..+++.. ... +...|.+++|+|++ +++++ |++|++|+..- ..+.... . ...
T Consensus 85 iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~----------------~---~~~ 141 (355)
T 3vu4_A 85 IWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDI----------------R---FGG 141 (355)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCE----------------E---EEE
T ss_pred EEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEec----------------c---CCc
Confidence 9999887654 443 57789999999985 44443 67899986321 1111111 0 123
Q ss_pred EEEEccCCceEEEee-ccccccCCCCEEEEEECCCCc----------------EEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 178 PISWRGDGKYFATLS-EFCNSSKLHKRLKVWERDSGT----------------LQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 178 ~isWspDG~~lAsvs-s~d~~~~~d~~irVWd~~~G~----------------l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
.+++++ .++| ++ + ..+++|+|||..++. +..++.+|.+.+.+++|+|+|++||++
T Consensus 142 ~~~~s~--~~la-~~sg-----~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 142 VCEFSN--GLLV-YSNE-----FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp EEEEET--TEEE-EEES-----SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEc--cEEE-EeCC-----CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 455666 6787 44 3 257899999997765 256778899999999999999999999
Q ss_pred ecCCCCCCCCe-EEEEeCC-CeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEE----
Q 000992 241 YDRKSENKCPS-IVFYERN-GLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKY---- 313 (1196)
Q Consensus 241 s~d~~~~~~~~-V~~~e~n-Gl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq---- 313 (1196)
+.| .+ |++|+.. |..... +. +.+...|.+++|||||++||+++.|+ +|++|++.+.......
T Consensus 214 s~d------~~~v~iwd~~~~~~~~~--~~~g~h~~~v~~~~~s~~~~~l~s~s~d~---~v~iw~~~~~~~~~~~~~~~ 282 (355)
T 3vu4_A 214 SQD------GTIIRVFKTEDGVLVRE--FRRGLDRADVVDMKWSTDGSKLAVVSDKW---TLHVFEIFNDQDNKRHALKG 282 (355)
T ss_dssp ETT------CSEEEEEETTTCCEEEE--EECTTCCSCEEEEEECTTSCEEEEEETTC---EEEEEESSCCSCCCSEETTT
T ss_pred eCC------CCEEEEEECCCCcEEEE--EEcCCCCCcEEEEEECCCCCEEEEEECCC---EEEEEEccCCCCcccccccc
Confidence 986 46 9999964 554443 44 22467899999999999999999999 9999998643210000
Q ss_pred --------------EEEEecCC---cEEEEEccCCCceEEEEecCCcEEEEEE
Q 000992 314 --------------EIRYLRRD---GIRFMWHPTKPLQLICWTLDGQITTYNF 349 (1196)
Q Consensus 314 --------------~l~~~~~~---~~~v~Wsp~~~~~L~~~~~~g~~~~~~~ 349 (1196)
...+.... ...++|+|++.. |.+++.+|.+..+++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~-l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSL-VVVWPHTRMIETFKV 334 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEE-EEEETTTTEEEEEEE
T ss_pred eeeccccccccceeEEEeccCCCCCceEEEEeCCCCE-EEEEeCCCeEEEEEE
Confidence 11111111 156889998764 788888887765443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-20 Score=212.53 Aligned_cols=295 Identities=10% Similarity=0.051 Sum_probs=193.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEe-ccCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMT-HDWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~-~~~d~~~~ 152 (1196)
.+.|.+++|+|||+.||+|+.+| +++|+.+++....... ..++..++|+|+++.++++ ++|++|++|+ .....+.+
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE-MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE-CSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee-cCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 46899999999999999998776 7899998765543333 3468999999999999664 5678999997 33444433
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC-cEEEEeccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG-TLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G-~l~~~~e~~~~~v~slaws 231 (1196)
.. +...+.+++|++++..+ +. +++|+|||..++ ++..+.+. ....++++
T Consensus 97 ~~-----------------~~~~v~~v~~~~~~~~~---~~-------~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 97 IK-----------------VDAPVKDLFLSREFIVV---SY-------GDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp EE-----------------CSSCEEEEEECSSEEEE---EE-------TTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred EE-----------------CCCceEEEEEcCCEEEE---EE-------cCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 32 22467999999987333 32 478999999777 55554443 34567788
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeE--------------E-EEEeccCCCCcEEEEEEccCCCeeEEEEccCCc
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLER--------------S-SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY 296 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~--------------~-~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~ 296 (1196)
| +++|.++... ...|++|+.+.... . ...+.. +...|.+++|||||++||+++.|+
T Consensus 147 ~--~~la~~sg~~----~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~-- 217 (355)
T 3vu4_A 147 N--GLLVYSNEFN----LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDG-- 217 (355)
T ss_dssp T--TEEEEEESSC----TTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTC--
T ss_pred c--cEEEEeCCCc----CcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCC--
Confidence 8 7777752211 35799999764220 0 112333 467899999999999999999999
Q ss_pred ce-EEEEEecCCEEEEEEEEE-E-ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEee
Q 000992 297 DS-VKICFFSNNHWYLKYEIR-Y-LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTP 373 (1196)
Q Consensus 297 ~~-V~lW~~~n~~wylkq~l~-~-~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~ 373 (1196)
+ |+||++.+... .+++. . +......+.|+|++.. |..++.+|.+. .|++............+- +.|
T Consensus 218 -~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~-l~s~s~d~~v~----iw~~~~~~~~~~~~~~~~---~~~ 286 (355)
T 3vu4_A 218 -TIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSK-LAVVSDKWTLH----VFEIFNDQDNKRHALKGW---INM 286 (355)
T ss_dssp -SEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCE-EEEEETTCEEE----EEESSCCSCCCSEETTTT---EEC
T ss_pred -CEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCE-EEEEECCCEEE----EEEccCCCCcccccccce---eec
Confidence 9 99999987652 34444 1 3333488999999875 77777788775 454431100000000010 000
Q ss_pred ccccCCCCCceeeeec--CCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 374 LSLSLMPPPMYLFSLK--FPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 374 l~~~~vpppm~~~~l~--~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
...... ..++...+. ...+...++|+||| +.|++++.||++++|++..
T Consensus 287 ~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~d~--~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 287 KYFQSE-WSLCNFKLSVDKHVRGCKIAWISES--SLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCCS-SCSEEEECCCCTTCCCCEEEESSSS--EEEEEETTTTEEEEEEEEE
T ss_pred cccccc-cceeEEEeccCCCCCceEEEEeCCC--CEEEEEeCCCeEEEEEEEc
Confidence 000000 011112221 12234679999999 8999999999999999853
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=211.89 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=177.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++.+ +++.+++++.|+.|..||. .+++.. .+ +.+| .+.|.+++| +++.|++|+.||+|++
T Consensus 135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~--~~~~~~---~~----~~~h----~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 135 GVYCLQY--DDQKIVSGLRDNTIKIWDK--NTLECK---RI----LTGH----TGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CEEEEEC--CSSEEEEEESSSCEEEEES--SSCCEE---EE----ECCC----SSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred cEEEEEE--CCCEEEEEeCCCeEEEEeC--CCCeEE---EE----EcCC----CCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 3455554 7899999999999999998 444431 11 3333 358999988 8999999999999999
Q ss_pred EECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 102 HSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 102 w~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
||..+++. .....|.+.|.+++|+| ..|++++.||+|.+|+.. ....... ..+.+|...+.++
T Consensus 198 wd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~v~~~ 262 (435)
T 1p22_A 198 WDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLR-------------RVLVGHRAAVNVV 262 (435)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEE-------------EEECCCSSCEEEE
T ss_pred EECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceee-------------eEecCCCCcEEEE
Confidence 99988765 35556789999999985 499999999999998632 1111100 0122566788999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
+| ||++|+ +++ .|++|+|||..+|++..+..+|.+.+.+++| +|++|++++.|+ .|++|+..
T Consensus 263 ~~--~~~~l~-s~~------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg------~i~iwd~~~ 325 (435)
T 1p22_A 263 DF--DDKYIV-SAS------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN------TIRLWDIEC 325 (435)
T ss_dssp EE--ETTEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS------CEEEEETTT
T ss_pred Ee--CCCEEE-EEe------CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC------eEEEEECCC
Confidence 99 889999 565 4699999999999999999999999999998 578999999864 69999954
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|..... +.. +...|.+++| |++.|++++.|+ +|++|++.+
T Consensus 326 ~~~~~~--~~~-h~~~v~~~~~--~~~~l~sg~~dg---~i~vwd~~~ 365 (435)
T 1p22_A 326 GACLRV--LEG-HEELVRCIRF--DNKRIVSGAYDG---KIKVWDLVA 365 (435)
T ss_dssp CCEEEE--ECC-CSSCEEEEEC--CSSEEEEEETTS---CEEEEEHHH
T ss_pred CCEEEE--EeC-CcCcEEEEEe--cCCEEEEEeCCC---cEEEEECCC
Confidence 544332 333 4567999999 899999999999 999999864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-19 Score=237.66 Aligned_cols=377 Identities=10% Similarity=-0.010 Sum_probs=231.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+...+|+++ ..+|+.+.++.+..|..+...+.. .. +..+ ..+..++|||||+.|+++ .+|+|.+
T Consensus 205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~--~~------l~~~-----~~~~~~~~SpDG~~la~~-~~~~i~~ 269 (1045)
T 1k32_A 205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL--RK------HTSF-----TDYYPRHLNTDGRRILFS-KGGSIYI 269 (1045)
T ss_dssp CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC--EE------CCCC-----CSSCEEEEEESSSCEEEE-ETTEEEE
T ss_pred cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc--eE------ecCC-----CCcceeeEcCCCCEEEEE-eCCEEEE
Confidence 4566778766 334444556655566552012211 11 2222 235567999999999988 4899999
Q ss_pred EECCCCeEEEeee-----------ecCcEEEEEEC-CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 102 HSVDGNATEVVGR-----------VEGGVRFISPS-PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 102 w~~~~~~~e~vg~-----------~~~~I~~~awS-PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
|+..++.+..+.. +.+.|.+++|| |||+.||+++ +++|.+|+....... .+.
T Consensus 270 ~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~--~~~------------- 333 (1045)
T 1k32_A 270 FNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL--KVP------------- 333 (1045)
T ss_dssp ECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE--ECS-------------
T ss_pred ecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE--Ecc-------------
Confidence 9997665543322 34479999999 9999999998 678888764321111 111
Q ss_pred ccCCC-CeEEEEEccCCceEEEeeccccccCCCCEEE-EEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC
Q 000992 170 SSSFS-FKSPISWRGDGKYFATLSEFCNSSKLHKRLK-VWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN 247 (1196)
Q Consensus 170 ~~~~~-~v~~isWspDG~~lAsvss~d~~~~~d~~ir-VWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~ 247 (1196)
.+.. .+..++|+ ||+.|+ .++ .+..+. +|+..+|+..... ++...+..++|||||++||+++.+
T Consensus 334 -~~~~~~~~~~~~s-dg~~l~-~~s------~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~---- 399 (1045)
T 1k32_A 334 -EPLRIRYVRRGGD-TKVAFI-HGT------REGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDR---- 399 (1045)
T ss_dssp -CCSCEEEEEECSS-SEEEEE-EEE------TTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETT----
T ss_pred -CCCcceEEeeeEc-CCCeEE-EEE------CCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCC----
Confidence 2233 56899999 999999 454 246788 9999666655444 677788999999999999999874
Q ss_pred CCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-------CcceEEEEEecCCEEEEEEEEEEecC
Q 000992 248 KCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-------EYDSVKICFFSNNHWYLKYEIRYLRR 320 (1196)
Q Consensus 248 ~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-------~~~~V~lW~~~n~~wylkq~l~~~~~ 320 (1196)
..|.+|+..+..... .+. .+...|.+++|||||+.||+++.+. ....|++|++.+... ..+..+..
T Consensus 400 --~~v~~~d~~tg~~~~-~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~---~~l~~~~~ 472 (1045)
T 1k32_A 400 --FEIMTVDLETGKPTV-IER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENS 472 (1045)
T ss_dssp --SEEEEEETTTCCEEE-EEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSS
T ss_pred --CeEEEEECCCCceEE-ecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE---EEeeCCCc
Confidence 479999975322221 122 2345688999999999999987743 123799999987641 22222222
Q ss_pred CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCC------------------C
Q 000992 321 DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP------------------P 382 (1196)
Q Consensus 321 ~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpp------------------p 382 (1196)
....+.|+|++.. |...+..+... .|.... ..+....+..+.+..+......+ .
T Consensus 473 ~~~~~~~spdG~~-l~~~s~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 544 (1045)
T 1k32_A 473 HDYAPAFDADSKN-LYYLSYRSLDP----SPDRVV---LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 544 (1045)
T ss_dssp BEEEEEECTTSCE-EEEEESCCCCC----EECSSS---SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred ccCCceEcCCCCE-EEEEecccCCc----Ccchhc---cccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence 2367899999975 55555433322 232210 00001112222222221000000 0
Q ss_pred c--eeeeec-CCCCEEEEEEecCCCCCEEEE-------------EECCCcEEEEeCCCCCccccccCCceeeeeeccccc
Q 000992 383 M--YLFSLK-FPTAVTEMAFYSKSSKNCLAA-------------ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETA 446 (1196)
Q Consensus 383 m--~~~~l~-~~~~V~~Vafspdg~~~~lAs-------------~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~ 446 (1196)
. ....+. +.+.+.+++|+||| ..+++ .....+|.+|++.+.... ..
T Consensus 545 ~~~~~~~l~~~~~~~~~~~~s~dg--~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~---------~l------- 606 (1045)
T 1k32_A 545 MYKRSSPINVDPGDYRMIIPLESS--ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT---------EV------- 606 (1045)
T ss_dssp GGGGCEECSCCCBCEEEEEECSSE--EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE---------EE-------
T ss_pred HhHceEEcCCCCCChhheEEcCCC--eEEEEecccCcccccccccCCCceEEEEECCCCcEE---------Ee-------
Confidence 0 011221 45678999999999 66775 122456777777643211 00
Q ss_pred CCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 447 FGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 447 ~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
...+..++|+|||+.|+++..+ .+.+|.+.
T Consensus 607 ~~~v~~~~~S~DG~~l~~~~~~---~i~~~d~~ 636 (1045)
T 1k32_A 607 KNNLTDLRLSADRKTVMVRKDD---GKIYTFPL 636 (1045)
T ss_dssp EEEEEEEEECTTSCEEEEEETT---SCEEEEES
T ss_pred ecCcceEEECCCCCEEEEEcCC---cEEEEeCc
Confidence 0357889999999999988764 67788763
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=225.58 Aligned_cols=350 Identities=9% Similarity=0.035 Sum_probs=206.1
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEeccccccccc-ceeeccccccc----cc---cCCCCCCEEEEEEccCCCEEEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA-SIKTAISAEIE----HI---DLEPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~-~~~~~~~~~l~----~~---~~~~~~~v~~v~~spd~~~La~as 94 (1196)
+..+.|. ++.+++.+.++ | .||. .+++.. ..+.. +..+. .. .......|.+++|||| +.++.+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~--~tg~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~- 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNK--ANGKSAQTTRFS-AADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF- 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC---------CEEEE-HHHHHTTC-----------CCCEEEEETTT-TEEEEE-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEEC--CCCcEeeEEeec-hhHhhhhccchhccccccccCceeEEECCC-CeEEEE-
Confidence 3445676 77777777777 8 9998 454430 01110 00010 00 0000136999999999 666665
Q ss_pred CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-----ceeeeeecccccCccccc--cC
Q 000992 95 SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-----DLLYENPLEELAEGFDVH--EP 167 (1196)
Q Consensus 95 ~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-----d~~~~~~l~~~~~~~~Vs--~t 167 (1196)
.+|+|.+||..+++...+..+.+.+.+++|||||+.||++ .+++|.+|+... ... ..+.... ...+. ..
T Consensus 99 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~--~~~~~~~-~~~~~~g~~ 174 (706)
T 2z3z_A 99 TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA--IAVTIDG-TETLVYGQA 174 (706)
T ss_dssp ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC--EESCSCC-BTTEEESSC
T ss_pred ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc--EEeccCC-CCCeEcccc
Confidence 4699999999998776444456779999999999999996 578999987432 111 1111110 00000 00
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccc---------------------------cCCCCEEEEEECCCCcEEEEec-
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNS---------------------------SKLHKRLKVWERDSGTLQASSE- 219 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~---------------------------~~~d~~irVWd~~~G~l~~~~e- 219 (1196)
..+.+...+..++|||||++|| +++.+.. ...+.+|++||..+|+......
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la-~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLA-FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEE-EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred hhhhhcCCCceEEECCCCCEEE-EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 0001112357899999999999 4542210 0134689999998887665543
Q ss_pred -cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCC---cEEEEEEcc--CCCeeEEEEc
Q 000992 220 -LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDS---TVELLKWNC--MSDLLAAVVR 292 (1196)
Q Consensus 220 -~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~---~V~~laWSp--Dg~~LAs~~~ 292 (1196)
++...+.+++|||||+.|++++.+.. .....|.+|+..+. ..... ....... .+..++||| ||++|+++..
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~-~~~~~v~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~ 331 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRA-QNECKVNAYDAETGRFVRTL-FVETDKHYVEPLHPLTFLPGSNNQFIWQSRR 331 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTT-SCEEEEEEEETTTCCEEEEE-EEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCC-CCeeEEEEEECCCCceeeEE-EEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence 35567899999999999998876531 12347889996543 22221 1111111 246789999 9999999888
Q ss_pred cCCcceEEEEEec-CCEEEEEEEEEEecCCcEE-EEEccCCCceEEEEec-CC--cEEEEEEEEeeecCCCeeEEEEcCC
Q 000992 293 FEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIR-FMWHPTKPLQLICWTL-DG--QITTYNFIWTTAVMENSTALVIDGS 367 (1196)
Q Consensus 293 d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~-v~Wsp~~~~~L~~~~~-~g--~~~~~~~~~~~~~~d~~~v~viDg~ 367 (1196)
++ .++||... +.. ....+..+...... +.|+|++.. |.+... ++ ...
T Consensus 332 ~g---~~~l~~~~~~~~--~~~~l~~~~~~v~~~~~~spdg~~-l~~~~~~~~~~~~~---------------------- 383 (706)
T 2z3z_A 332 DG---WNHLYLYDTTGR--LIRQVTKGEWEVTNFAGFDPKGTR-LYFESTEASPLERH---------------------- 383 (706)
T ss_dssp TS---SCEEEEEETTSC--EEEECCCSSSCEEEEEEECTTSSE-EEEEESSSCTTCBE----------------------
T ss_pred CC---ccEEEEEECCCC--EEEecCCCCeEEEeeeEEcCCCCE-EEEEecCCCCceEE----------------------
Confidence 87 78999876 322 11222221112233 799999875 333332 22 111
Q ss_pred EEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECC----CcEEEEeCCCC
Q 000992 368 KILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSD----GCLCVVDLPAP 425 (1196)
Q Consensus 368 ~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~d----g~v~lw~~~~~ 425 (1196)
|..+++.... ...+.+...+.+++||||| +.++....+ +.|.+|+..+.
T Consensus 384 -l~~~d~~~~~------~~~l~~~~~~~~~~~spdg--~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 384 -FYCIDIKGGK------TKDLTPESGMHRTQLSPDG--SAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -EEEEETTCCC------CEESCCSSSEEEEEECTTS--SEEEEEEECSSCSCEEEEEESSSC
T ss_pred -EEEEEcCCCC------ceeccCCCceEEEEECCCC--CEEEEEecCCCCCcEEEEEECCCC
Confidence 1111111110 0123345678999999999 788776544 46999998753
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-19 Score=203.00 Aligned_cols=202 Identities=13% Similarity=0.035 Sum_probs=132.6
Q ss_pred CCEEEEEEccC----CCEEEEEEC--------------------CCcEEEEECCC-CeE-EEeeeecCcEEEEEECC---
Q 000992 76 DSITAFDYLME----KEALIVGTS--------------------SGLLLLHSVDG-NAT-EVVGRVEGGVRFISPSP--- 126 (1196)
Q Consensus 76 ~~v~~v~~spd----~~~La~as~--------------------dG~I~lw~~~~-~~~-e~vg~~~~~I~~~awSP--- 126 (1196)
..|.+++|+|| ++.+++++. |++|++|+... ++. .....|...+..++|||
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 37999999999 999988764 66666666522 322 22223455666666666
Q ss_pred CCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc------ccC
Q 000992 127 DGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN------SSK 199 (1196)
Q Consensus 127 Dg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~------~~~ 199 (1196)
||++||+++.|++|++|+ +.+..+.....+. . +...+.+++|+|||++++ +.+.+. ...
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~----~---------~v~~v~~vafSpdG~~lv-s~s~~~~~w~laSGs 257 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD----S---------YQASVCHKAYSEMGLLFI-VLSHPCAKESESLRS 257 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC----------------CCCEEEEEEETTEEEE-EEC------------
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCC----c---------ceeeeEEEEECCCCCEEE-EeccCCCcceeeccC
Confidence 667799999999999987 3344444332111 1 113567889999999987 333210 013
Q ss_pred CCCEEEEEECCCCcEEEEe-----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCC
Q 000992 200 LHKRLKVWERDSGTLQASS-----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDS 273 (1196)
Q Consensus 200 ~d~~irVWd~~~G~l~~~~-----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~ 273 (1196)
.|++||+||..+|++..+. .+|.+.. ++.+.+|.++|+++.|+ +|++||.. |.... +|..+...
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~--lsg~~sg~~lASgS~Dg------TIkIWDl~tGk~l~--tL~gH~~~ 327 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRF--LEGDVKDHCAAAILTSG------TIAIWDLLLGQCTA--LLPPVSDQ 327 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCE--EEEEEETTEEEEEETTS------CEEEEETTTCSEEE--EECCC--C
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCccee--EccccCCCEEEEEcCCC------cEEEEECCCCcEEE--EecCCCCC
Confidence 6899999999999887765 2444433 34444588999999874 69999964 44333 34433322
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.+..++|||||++||+++.|+ +|+||+.
T Consensus 328 vvs~vafSPDG~~LaSGS~D~---TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDG---NIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTS---CEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCC---cEEEecC
Confidence 344699999999999999999 9999985
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-20 Score=232.52 Aligned_cols=294 Identities=9% Similarity=0.046 Sum_probs=176.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----- 96 (1196)
....++|.+|+..+++ +.++.|+.||. .+++.. .+ +..+.. ....|.+++|||||+.|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~--~~g~~~-~~------~~~~~~-~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNV--ETNTST-VL------IEGKKI-ESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCG--GGCCCE-EE------ECTTTT-TTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEEC--CCCcEE-EE------eccccc-cccccceEEECCCCCEEEEEecCcccee
Confidence 4566789999997765 67888999999 555432 11 121111 01248999999999999999875
Q ss_pred ----CcEEEEECCCCeEEEee---eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 97 ----GLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 97 ----G~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
++|.+||.++++...+. .+...+.+++|||||+.||+++. ++|.+|+....... .+.... ...+ .+
T Consensus 87 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~--~~~~~~-~~~~---~~ 159 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI--RVVSTG-KEGV---IY 159 (723)
T ss_dssp SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE--EEECCC-BTTT---EE
T ss_pred ecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE--EEecCC-CCCc---eE
Confidence 78889999987654333 23344889999999999999987 68988864321111 111110 0000 00
Q ss_pred ccC---------CCCeEEEEEccCCceEEEeeccccc----------------------------cCCCCEEEEEECCCC
Q 000992 170 SSS---------FSFKSPISWRGDGKYFATLSEFCNS----------------------------SKLHKRLKVWERDSG 212 (1196)
Q Consensus 170 ~~~---------~~~v~~isWspDG~~lAsvss~d~~----------------------------~~~d~~irVWd~~~G 212 (1196)
.++ .+.+..++|||||++|| .++.+.. ...+.+|++||..+|
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLA-YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEE-EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEE-EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 000 12347899999999999 4543310 001238999999788
Q ss_pred cEEEEeccC------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE----EEEEcc
Q 000992 213 TLQASSELK------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE----LLKWNC 282 (1196)
Q Consensus 213 ~l~~~~e~~------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~----~laWSp 282 (1196)
+.......+ .+.+.+++|||||++|++.+... .....|.+|+.++..... .+..++...+. .++|||
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA--QNVSILTLCDATTGVCTK-KHEDESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT--SCEEEEEEEETTTCCEEE-EEEEECSSCCCCCCCCCEECT
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC--CCeEEEEEEeCCCCcceE-EEEeccCCEEeccCCCceEcC
Confidence 754444433 56788999999999998775432 123578899965432221 11112223333 789999
Q ss_pred CCCeeEEE-EccCC----cceEEEEE-ecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEE
Q 000992 283 MSDLLAAV-VRFEE----YDSVKICF-FSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICW 338 (1196)
Q Consensus 283 Dg~~LAs~-~~d~~----~~~V~lW~-~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~ 338 (1196)
||+.|+.. +.... ...|.+|+ ..+..-.....+....... ..+.|+|++.. |...
T Consensus 316 dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~-l~~~ 377 (723)
T 1xfd_A 316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNK-IYFL 377 (723)
T ss_dssp TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTE-EEEE
T ss_pred CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCE-EEEE
Confidence 99999986 33221 11466666 2322100001111111112 23689999875 4433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-18 Score=211.49 Aligned_cols=326 Identities=11% Similarity=0.016 Sum_probs=210.4
Q ss_pred EEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec---cCceeeeeeccc
Q 000992 82 DYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH---DWDLLYENPLEE 157 (1196)
Q Consensus 82 ~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~---~~d~~~~~~l~~ 157 (1196)
+|+|++..+++++.+|+|.+||..++++. .+.. ...+.+++|||||++|++++.|++|.+|+. ....+.++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~-g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-- 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-- 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC-STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEec-CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--
Confidence 37999999999999999999999987653 3331 123899999999999999999999999875 2333332221
Q ss_pred ccCccccccCccccCCCCeEEEEEcc----CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-----------C
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRG----DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----------A 222 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWsp----DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-----------~ 222 (1196)
......++|+| ||++++ +++. .+++|+|||..+++++.+.... .
T Consensus 221 ---------------g~~p~~va~sp~~~~dg~~l~-v~~~-----~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~ 279 (543)
T 1nir_A 221 ---------------GIEARSVESSKFKGYEDRYTI-AGAY-----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 279 (543)
T ss_dssp ---------------CSEEEEEEECCSTTCTTTEEE-EEEE-----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred ---------------CCCcceEEeCCCcCCCCCEEE-EEEc-----cCCeEEEEeccccccceeecccCcccCccccccC
Confidence 12458999999 999998 6652 3589999999999998876531 2
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEE
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVK 300 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~ 300 (1196)
..+.++.++|+|..+..+... ...|.+|+..... .....+. ....+..++|+|||++|.+++. ++ +|.
T Consensus 280 ~~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~---~v~ 349 (543)
T 1nir_A 280 PRVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSN---KVA 349 (543)
T ss_dssp CCEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGT---EEE
T ss_pred CceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCC---eEE
Confidence 257899999988765544433 3579999854311 1111222 2345778999999998776654 55 899
Q ss_pred EEEecCCEEEEEEEEEEe----cCCcEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeecc
Q 000992 301 ICFFSNNHWYLKYEIRYL----RRDGIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLS 375 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~----~~~~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~ 375 (1196)
+||..+.. +.+.+... +.....+ ++|++...+.... .++ +|.+|+..
T Consensus 350 v~D~~tg~--l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~-------------------------~V~v~d~~ 401 (543)
T 1nir_A 350 VIDSKDRR--LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG-------------------------SISLIGTD 401 (543)
T ss_dssp EEETTTTE--EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS-------------------------EEEEEECC
T ss_pred EEECCCCe--EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc-------------------------eEEEEEeC
Confidence 99999875 33444421 1111222 4666443222211 122 33333322
Q ss_pred ccCCCC--Cceeeeec-CCCCEEEEEEecCCCCCEEEEEE-------CCCcEEEEeCCCCCccccccCCceeeeee--c-
Q 000992 376 LSLMPP--PMYLFSLK-FPTAVTEMAFYSKSSKNCLAAIL-------SDGCLCVVDLPAPDMLEDLEGTEFVVEAC--I- 442 (1196)
Q Consensus 376 ~~~vpp--pm~~~~l~-~~~~V~~Vafspdg~~~~lAs~~-------~dg~v~lw~~~~~~~~~~~~g~~~~~~~~--~- 442 (1196)
...-|. -.+.+++. +...+..|+||||| +.|++.+ .+++|.+|+..+..+. ++..+. .
T Consensus 402 ~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg--~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~-------~~~~~v~~~~ 472 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKS--SHLYVDTTFNPDARISQSVAVFDLKNLDAK-------YQVLPIAEWA 472 (543)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTC--CEEEECCTTCSSHHHHTCEEEEETTCTTSC-------CEEECHHHHH
T ss_pred CCCCchhcCeEEEEEEcCCCCceEEEcCCCC--CcEEEecCCCCCcccCceEEEEECCCCCCC-------eEEeechhhc
Confidence 100000 11234454 45667889999999 8999987 2779999999875433 111100 0
Q ss_pred -ccccCCcEEEEEEecCCeEEEEEec---CCCCceEEEEe
Q 000992 443 -SETAFGSVIHLIWLGSHLLLSVSHH---GPRHSNYFRGA 478 (1196)
Q Consensus 443 -~~~~~~~v~~l~~~~d~~lla~~~~---~~~~~~~~~~~ 478 (1196)
...+...++++.|+|+|+.|.++.. +..+.+.+|+.
T Consensus 473 ~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 473 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEET
T ss_pred ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEEC
Confidence 0122358999999999998887643 22366777654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=225.49 Aligned_cols=322 Identities=9% Similarity=0.023 Sum_probs=193.8
Q ss_pred EEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC---cEEEEEECCCCCEEEEEeC---------CceEEEEec
Q 000992 79 TAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG---GVRFISPSPDGDLLGVTTG---------FGQILVMTH 145 (1196)
Q Consensus 79 ~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~---~I~~~awSPDg~~LA~~s~---------d~tV~l~~~ 145 (1196)
.+++|+|||+.++ .+.||+|++||..+++.. +..++.. +|.+++|||||++||+++. +++|.+|+.
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 3789999996554 457999999999998765 4443332 4899999999999999986 688988864
Q ss_pred cCcee-eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCC
Q 000992 146 DWDLL-YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAF 223 (1196)
Q Consensus 146 ~~d~~-~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~ 223 (1196)
..... ....+ ...+..++|||||++|| .++ ++.|++|+..+|+..... .++..
T Consensus 98 ~~g~~~~~~~l-----------------~~~~~~~~~SPDG~~la-~~~-------~~~i~~~~~~~g~~~~l~~~~~~~ 152 (719)
T 1z68_A 98 SNGEFVRGNEL-----------------PRPIQYLCWSPVGSKLA-YVY-------QNNIYLKQRPGDPPFQITFNGREN 152 (719)
T ss_dssp TTTEECCSSCC-----------------CSSBCCEEECSSTTCEE-EEE-------TTEEEEESSTTSCCEECCCCCBTT
T ss_pred CCCccccceec-----------------CcccccceECCCCCEEE-EEE-------CCeEEEEeCCCCCcEEEecCCCcC
Confidence 32111 00111 12457899999999999 443 479999999888776543 22222
Q ss_pred c-----------------eeEEEEcCCCCeEEEEecCCCC----------------------------CCCCeEEEEeCC
Q 000992 224 M-----------------GAVLEWMPSGANIAAVYDRKSE----------------------------NKCPSIVFYERN 258 (1196)
Q Consensus 224 ~-----------------v~slawsPdG~~IAs~s~d~~~----------------------------~~~~~V~~~e~n 258 (1196)
. ..+++|||||+.||+++.+.+. ....+|.+|+.+
T Consensus 153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~ 232 (719)
T 1z68_A 153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTT 232 (719)
T ss_dssp TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESS
T ss_pred CeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECC
Confidence 1 1489999999999999865321 012267888876
Q ss_pred CeeEE-EEEecc-----CCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEE----ecCCEEEEEEEE----EEecCCcE
Q 000992 259 GLERS-SFDINE-----QIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICF----FSNNHWYLKYEI----RYLRRDGI 323 (1196)
Q Consensus 259 Gl~~~-~f~l~~-----~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~----~~n~~wylkq~l----~~~~~~~~ 323 (1196)
+.... .+.+.. .+...+.+++|||||++++++..... ...|.+|+ ..+..+ ...+ ..+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--~~~~~~~~~~~~~~~~ 310 (719)
T 1z68_A 233 YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--PKTQEHIEESRTGWAG 310 (719)
T ss_dssp CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC--CGGGEEEEECSSSCSS
T ss_pred CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce--EEEEecccccCCceEc
Confidence 53310 012211 13456899999999988887654321 12588888 655432 1111 11111112
Q ss_pred -----EEEEccCCCceEEEE-e-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeec-CCCCEE
Q 000992 324 -----RFMWHPTKPLQLICW-T-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLK-FPTAVT 395 (1196)
Q Consensus 324 -----~v~Wsp~~~~~L~~~-~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~-~~~~V~ 395 (1196)
.+.|+|++.. +.++ . .+|.. +|.++++.... ...+. +...|.
T Consensus 311 ~~~~~~~~~spdg~~-l~~~~~~~~g~~-----------------------~l~~~~~~~~~------~~~lt~~~~~v~ 360 (719)
T 1z68_A 311 GFFVSTPVFSYDAIS-YYKIFSDKDGYK-----------------------HIHYIKDTVEN------AIQITSGKWEAI 360 (719)
T ss_dssp SSSCCCCEECTTSSC-EEEEEECTTSCE-----------------------EEEEESSCSTT------CEECSCSSSCEE
T ss_pred cccCCccEECCCCCe-EEEEEEccCCce-----------------------EEEEEECCCCc------eEecccCceEEE
Confidence 5789999875 3332 2 23322 12222222111 01121 234577
Q ss_pred EEEEecCCCCCEEEEEECC-----CcEEEEeCCCCCccccccCC-ceeeeeecccccCCcEEEEEEecCCeEEEEEec
Q 000992 396 EMAFYSKSSKNCLAAILSD-----GCLCVVDLPAPDMLEDLEGT-EFVVEACISETAFGSVIHLIWLGSHLLLSVSHH 467 (1196)
Q Consensus 396 ~Vafspdg~~~~lAs~~~d-----g~v~lw~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~ 467 (1196)
.+.|+ ++ +.|+..+.+ ++++||.++... |. ......+....+...+..+.|+||++.++....
T Consensus 361 ~~~~~-d~--~~i~~~~~~~~~~~~~~~l~~~~~~~------g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s 429 (719)
T 1z68_A 361 NIFRV-TQ--DSLFYSSNEFEEYPGRRNIYRISIGS------YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCY 429 (719)
T ss_dssp EEEEE-CS--SEEEEEESCGGGCTTCBEEEEEECSS------SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEEC
T ss_pred EEEEE-eC--CEEEEEEecCCCCCceEEEEEEeCCC------CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcC
Confidence 88888 77 677666665 889999876310 10 001000000012235778899999987776544
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-18 Score=192.80 Aligned_cols=293 Identities=15% Similarity=0.096 Sum_probs=187.4
Q ss_pred EEEEEE-ccCCCEEE--EEECCCcEEEEECCCC---e-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCcee
Q 000992 78 ITAFDY-LMEKEALI--VGTSSGLLLLHSVDGN---A-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLL 150 (1196)
Q Consensus 78 v~~v~~-spd~~~La--~as~dG~I~lw~~~~~---~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~ 150 (1196)
+.++-| .+..+-+| +|+ ..+|+||++..+ + +.....|+..|..++|+||..-|+.+.- |++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~---------- 109 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-GNL---------- 109 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-CSS----------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-ccc----------
Confidence 555666 44455554 444 457999999875 2 2345556789999999999766554431 111
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccC----CceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCce
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMG 225 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD----G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v 225 (1196)
+ ...+.+++++|| |++++ +++ ..++||+..+|+++.++ .+|++.|
T Consensus 110 ---------~------------~~~v~sla~spd~~~~~~~l~-s~g--------~~~~v~~l~~g~lv~ss~~g~d~~V 159 (356)
T 2w18_A 110 ---------E------------IREIRALFCSSDDESEKQVLL-KSG--------NIKAVLGLTKRRLVSSSGTLSDQQV 159 (356)
T ss_dssp ---------S------------EEEEEEECC------CCEEEE-EEE--------EEEEEEEETTTEEEEEESSSTTCEE
T ss_pred ---------c------------ccceEEEEECCCccccccEEE-eCC--------CeEEEEecCCCcEEEecccCCCCcE
Confidence 0 023589999999 99999 554 46899999899999884 7899999
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc---CCCeeEEEEccCCcceEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC---MSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp---Dg~~LAs~~~d~~~~~V~lW 302 (1196)
..++++|+|+.+++... +...+..++||| |++.||+++.|+ +|+||
T Consensus 160 ~~~~~s~dG~~~~s~~~----------------------------~~~~v~~l~fs~~~g~~~~LaSgS~D~---TIkIW 208 (356)
T 2w18_A 160 EVMTFAEDGGGKENQFL----------------------------MPPEETILTFAEVQGMQEALLGTTIMN---NIVIW 208 (356)
T ss_dssp EEEEECTTSCEEEEEEE----------------------------CCCSSCEEEEEEEETSTTEEEEEETTS---EEEEE
T ss_pred EEEEECCCCceeeeecc----------------------------CCCceeeEEeeccCCCCceEEEecCCC---cEEEE
Confidence 99999999998875321 123467889999 889999999999 99999
Q ss_pred EecCCEEEEEEEEEEecC---CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 303 FFSNNHWYLKYEIRYLRR---DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 303 ~~~n~~wylkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
|+.+.+. .+.+..+.. ....++|+|++.. +...+.+.. .|.+. ......++++|+...+..
T Consensus 209 Dl~TGk~--l~tL~g~~~~v~~v~~vafSpdG~~-lvs~s~~~~------~w~la-------SGs~D~tIklWd~~tgk~ 272 (356)
T 2w18_A 209 NLKTGQL--LKKMHIDDSYQASVCHKAYSEMGLL-FIVLSHPCA------KESES-------LRSPVFQLIVINPKTTLS 272 (356)
T ss_dssp ETTTCCE--EEEEECCC---CCCEEEEEEETTEE-EEEEC-------------------------CCEEEEEEETTTTEE
T ss_pred ECCCCcE--EEEEcCCCcceeeeEEEEECCCCCE-EEEeccCCC------cceee-------ccCCCcEEEEEECCCCEE
Confidence 9998752 344543221 2256789998754 333332111 12221 222344556665443211
Q ss_pred CCCceeeee--cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCc-EEEEEEe
Q 000992 380 PPPMYLFSL--KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGS-VIHLIWL 456 (1196)
Q Consensus 380 pppm~~~~l--~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-v~~l~~~ 456 (1196)
...+. ..+ .|...+.+..++ + ..+|+++.|++|+|||+.+..+..++.|+ .+. +..++|+
T Consensus 273 l~v~~-~~~p~Gh~~~~lsg~~s--g--~~lASgS~DgTIkIWDl~tGk~l~tL~gH------------~~~vvs~vafS 335 (356)
T 2w18_A 273 VGVML-YCLPPGQAGRFLEGDVK--D--HCAAAILTSGTIAIWDLLLGQCTALLPPV------------SDQHWSFVKWS 335 (356)
T ss_dssp EEEEE-ECCCTTCCCCEEEEEEE--T--TEEEEEETTSCEEEEETTTCSEEEEECCC--------------CCCCEEEEC
T ss_pred EEEEE-eeccCCCcceeEccccC--C--CEEEEEcCCCcEEEEECCCCcEEEEecCC------------CCCeEEEEEEC
Confidence 00000 000 233344444444 5 78999999999999999987777666654 233 3458999
Q ss_pred cCCeEEEEEecCCCCceEEEEe
Q 000992 457 GSHLLLSVSHHGPRHSNYFRGA 478 (1196)
Q Consensus 457 ~d~~lla~~~~~~~~~~~~~~~ 478 (1196)
|||++|++++.+ .++.+|++
T Consensus 336 PDG~~LaSGS~D--~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKD--GNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTT--SCEEEEEE
T ss_pred CCCCEEEEEECC--CcEEEecC
Confidence 999999999876 68888875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-18 Score=213.46 Aligned_cols=325 Identities=11% Similarity=0.026 Sum_probs=195.8
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeE--EEeeeec-----------------CcEEEEEECCCCCEEEEEeCC
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT--EVVGRVE-----------------GGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~--e~vg~~~-----------------~~I~~~awSPDg~~LA~~s~d 137 (1196)
.+..+.|+ |+.++.++.+| | +||..+++. ..+-.+. .+|.+++|||| +.|++++ +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35567888 77788888888 8 999998766 5333322 46999999999 6666664 4
Q ss_pred ceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-----C
Q 000992 138 GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-----G 212 (1196)
Q Consensus 138 ~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-----G 212 (1196)
++|.+|+..-..... +. .+...+..++|||||++|| .+. ++.|++|+..+ |
T Consensus 101 ~~i~~~d~~~~~~~~--l~--------------~~~~~~~~~~~SpdG~~la-~~~-------~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 101 GGLVGFDMLARKVTY--LF--------------DTNEETASLDFSPVGDRVA-YVR-------NHNLYIARGGKLGEGMS 156 (706)
T ss_dssp TEEEEEETTTTEEEE--EE--------------CCTTCCTTCEECTTSSEEE-EEE-------TTEEEEEECBCTTSCCC
T ss_pred CEEEEEECCCCceEE--cc--------------CCcccccCCcCCCCCCEEE-EEE-------CCeEEEEecCcccccCC
Confidence 899998743221111 11 1123457899999999999 443 48999999977 8
Q ss_pred cEEEEeccCCCc--------------eeEEEEcCCCCeEEEEecCCC---------------------------CCCCCe
Q 000992 213 TLQASSELKAFM--------------GAVLEWMPSGANIAAVYDRKS---------------------------ENKCPS 251 (1196)
Q Consensus 213 ~l~~~~e~~~~~--------------v~slawsPdG~~IAs~s~d~~---------------------------~~~~~~ 251 (1196)
+........... +.+++|||||++||+++.+.+ ......
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 776654433332 479999999999999984321 012356
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc--ceEEEEEecCC-EEEEEEEEEEecCC----cEE
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY--DSVKICFFSNN-HWYLKYEIRYLRRD----GIR 324 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~--~~V~lW~~~n~-~wylkq~l~~~~~~----~~~ 324 (1196)
|.+|+..+...........+...+..++|||||+.|++++.++.. ..|.+|+..+. .+. ......... ...
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~--~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR--TLFVETDKHYVEPLHP 314 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE--EEEEEECSSCCCCCSC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee--EEEEccCCCeECccCC
Confidence 888987653322111111234568999999999999998876422 27999999876 431 111111111 134
Q ss_pred EEEcc--CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEE-EEEec
Q 000992 325 FMWHP--TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE-MAFYS 401 (1196)
Q Consensus 325 v~Wsp--~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~-Vafsp 401 (1196)
+.|+| ++. .+.+...+|.... |.++. +|+.+. .+. .+...|.+ ++|||
T Consensus 315 ~~~sp~~dg~-~l~~~~~~g~~~l----~~~~~---------~~~~~~--~l~-------------~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 315 LTFLPGSNNQ-FIWQSRRDGWNHL----YLYDT---------TGRLIR--QVT-------------KGEWEVTNFAGFDP 365 (706)
T ss_dssp CEECTTCSSE-EEEEECTTSSCEE----EEEET---------TSCEEE--ECC-------------CSSSCEEEEEEECT
T ss_pred ceeecCCCCE-EEEEEccCCccEE----EEEEC---------CCCEEE--ecC-------------CCCeEEEeeeEEcC
Confidence 78999 775 3444444554332 22211 232221 110 13445666 89999
Q ss_pred CCCCCEEEEEECCC-----cEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCC--CceE
Q 000992 402 KSSKNCLAAILSDG-----CLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPR--HSNY 474 (1196)
Q Consensus 402 dg~~~~lAs~~~dg-----~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~--~~~~ 474 (1196)
|| +.|+..+.+. .|..|+..+.. ...+ .+...+..++|+|||+.++....+.. ..+.
T Consensus 366 dg--~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l-------------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 366 KG--TRLYFESTEASPLERHFYCIDIKGGK-TKDL-------------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp TS--SEEEEEESSSCTTCBEEEEEETTCCC-CEES-------------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred CC--CEEEEEecCCCCceEEEEEEEcCCCC-ceec-------------cCCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence 99 7776665553 45555554321 1011 12246888999999998877644332 4466
Q ss_pred EEEe
Q 000992 475 FRGA 478 (1196)
Q Consensus 475 ~~~~ 478 (1196)
+|+.
T Consensus 430 l~d~ 433 (706)
T 2z3z_A 430 VTNI 433 (706)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-18 Score=189.75 Aligned_cols=254 Identities=14% Similarity=0.078 Sum_probs=167.6
Q ss_pred CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC-CeEEE-e-eeec
Q 000992 40 SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-NATEV-V-GRVE 116 (1196)
Q Consensus 40 ~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-~~~e~-v-g~~~ 116 (1196)
.++.|+.||+ .+++.. . +..+ .+.|.+++|+|||+.|++++ +|.|.+||..+ ++... . ++..
T Consensus 20 ~~~~i~~~d~--~~~~~~-~-------~~~~----~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~ 84 (297)
T 2ojh_A 20 MRSSIEIFNI--RTRKMR-V-------VWQT----PELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFAT 84 (297)
T ss_dssp CCEEEEEEET--TTTEEE-E-------EEEE----SSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCC
T ss_pred cceeEEEEeC--CCCcee-e-------eccC----CcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccc
Confidence 4668999998 444431 1 2222 35799999999999999986 88999999998 76542 2 3324
Q ss_pred CcEEEEEECCCCCEEEEEe--CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc
Q 000992 117 GGVRFISPSPDGDLLGVTT--GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF 194 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s--~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~ 194 (1196)
..|.+++|||||+.|++++ .++.+.+|..+.+.-....+. ....+..++|+|||++|+.+++
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~spdg~~l~~~~~- 148 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMT---------------KNLPSYWHGWSPDGKSFTYCGI- 148 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECC---------------SSSSEEEEEECTTSSEEEEEEE-
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEee---------------cCCCccceEECCCCCEEEEEEC-
Confidence 6789999999999999999 445666664322111111111 1123688999999999883232
Q ss_pred ccccCCCCEEEEEE--CCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEeccC
Q 000992 195 CNSSKLHKRLKVWE--RDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDINEQ 270 (1196)
Q Consensus 195 d~~~~~d~~irVWd--~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~~~ 270 (1196)
.++.++||+ ..+++. .....+.+.+.+++|+|+|+.|+.++... ..+.+|. ..+.... .+..
T Consensus 149 -----~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~~i~~~~~~~~~~~--~~~~- 214 (297)
T 2ojh_A 149 -----RDQVFDIYSMDIDSGVE-TRLTHGEGRNDGPDYSPDGRWIYFNSSRT-----GQMQIWRVRVDGSSVE--RITD- 214 (297)
T ss_dssp -----ETTEEEEEEEETTTCCE-EECCCSSSCEEEEEECTTSSEEEEEECTT-----SSCEEEEEETTSSCEE--ECCC-
T ss_pred -----CCCceEEEEEECCCCcc-eEcccCCCccccceECCCCCEEEEEecCC-----CCccEEEECCCCCCcE--EEec-
Confidence 357888988 434554 44455677889999999999988776421 2355554 3443322 2222
Q ss_pred CCCcEEEEEEccCCCeeEEEEccCC--------cceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 271 IDSTVELLKWNCMSDLLAAVVRFEE--------YDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 271 ~~~~V~~laWSpDg~~LAs~~~d~~--------~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
+...+..++|||||+.||+++.++. ...|.+|+..+........+..+......+.|+|++.. |.+.+
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~ 290 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE-FAYVR 290 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE-EEEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE-EEEEE
Confidence 2356889999999999999987631 13699999987654322223232223367899999875 44443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=186.99 Aligned_cols=273 Identities=14% Similarity=0.104 Sum_probs=173.2
Q ss_pred CEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-CcEEEEECC--CCe
Q 000992 33 NRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS-GLLLLHSVD--GNA 108 (1196)
Q Consensus 33 ~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d-G~I~lw~~~--~~~ 108 (1196)
..+|++ +.++.|..|+++ ..+..+ .+.. .+ ....+.+++|+|||+.|++++.+ |.|.+|+.+ ++.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~-~~~~~~-~~~~-------~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLN-HEGALT-LTQV-------VD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEEC-TTSCEE-EEEE-------EE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCeEEEEEEC-CCCcEE-Eeee-------Ee--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc
Confidence 456666 558889999983 122211 1111 11 13468889999999999998887 999999987 665
Q ss_pred EEEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC
Q 000992 109 TEVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185 (1196)
Q Consensus 109 ~e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG 185 (1196)
...+... .+.+.+++|||||+.|++++. +++|.+|+.. +........... ....+..++|+|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~~------------~~~~~~~~~~s~dg 140 (343)
T 1ri6_A 74 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DGLPVGVVDVVE------------GLDGCHSANISPDN 140 (343)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TTEEEEEEEEEC------------CCTTBCCCEECTTS
T ss_pred eeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CCcccccccccc------------CCCCceEEEECCCC
Confidence 5433222 347899999999998877765 7889998642 111111111110 11245789999999
Q ss_pred ceEEEeeccccccCCCCEEEEEECCC-CcEEEEe-----ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 186 KYFATLSEFCNSSKLHKRLKVWERDS-GTLQASS-----ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 186 ~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~~-----e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
++++ +++. .++.|++||..+ |++.... .+....+..++|+|+|+++++++.. ...|.+|+.+
T Consensus 141 ~~l~-~~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----~~~i~~~~~~~ 209 (343)
T 1ri6_A 141 RTLW-VPAL-----KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----NSSVDVWELKD 209 (343)
T ss_dssp SEEE-EEEG-----GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEESSC
T ss_pred CEEE-EecC-----CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEecC
Confidence 9888 5541 358999999866 7664321 2233456889999999988766543 3579999974
Q ss_pred --Cee--EEEEE-eccC--CCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEec--CCEEEEEEEEEEecCCcEEEEEc
Q 000992 259 --GLE--RSSFD-INEQ--IDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFS--NNHWYLKYEIRYLRRDGIRFMWH 328 (1196)
Q Consensus 259 --Gl~--~~~f~-l~~~--~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~--n~~wylkq~l~~~~~~~~~v~Ws 328 (1196)
|.. ...+. ++.. ....+..++|+|||+.|+++. .++ .|++|+.. +..+.....+... .....+.|+
T Consensus 210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~---~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s 285 (343)
T 1ri6_A 210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS---LITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVD 285 (343)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT---EEEEEEECTTSCCEEEEEEEECS-SSCCCEEEC
T ss_pred CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC---EEEEEEEcCCCCceEEeeeecCC-CccceEEEC
Confidence 322 11111 1111 123577899999999888665 455 89999998 3333222333221 124678999
Q ss_pred cCCCceEEEEe-cCCcEE
Q 000992 329 PTKPLQLICWT-LDGQIT 345 (1196)
Q Consensus 329 p~~~~~L~~~~-~~g~~~ 345 (1196)
|++.. |.+.. .+|.+.
T Consensus 286 ~dg~~-l~~~~~~~~~v~ 302 (343)
T 1ri6_A 286 HSGKY-LIAAGQKSHHIS 302 (343)
T ss_dssp TTSSE-EEEECTTTCEEE
T ss_pred CCCCE-EEEecCCCCeEE
Confidence 99865 55555 345443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=187.94 Aligned_cols=277 Identities=12% Similarity=0.091 Sum_probs=169.8
Q ss_pred CCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEEEee---eecCcEEEEEECCCCCEEEEEe-CCceEEEEeccC-
Q 000992 76 DSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATEVVG---RVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDW- 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e~vg---~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~- 147 (1196)
..+..++|+|||+ |++++. +|.|.+|+.+++..+.+. .+...+..++|||||++|++++ .+++|.+|+..-
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~ 118 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAAD 118 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTT
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC
Confidence 4677899999999 666554 689999999887654333 2466789999999999999998 788999987421
Q ss_pred -c--eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEe--cc-
Q 000992 148 -D--LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASS--EL- 220 (1196)
Q Consensus 148 -d--~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~--e~- 220 (1196)
. .+....... . .+. .......+..++|+|||++++ ++. .++.|++|+.. +|++.... ..
T Consensus 119 g~~~~~~~~~~~~--~-~p~----~~~~~~~~~~~~~spdg~l~v-~~~------~~~~v~~~~~~~~g~~~~~~~~~~~ 184 (347)
T 3hfq_A 119 GALTLTDTVQHSG--H-GPR----PEQDGSHIHYTDLTPDNRLAV-IDL------GSDKVYVYNVSDAGQLSEQSVLTME 184 (347)
T ss_dssp SCEEEEEEEECCC--C-CSS----TTCSSCCEEEEEECTTSCEEE-EET------TTTEEEEEEECTTSCEEEEEEEECC
T ss_pred CCeeecceeecCC--C-CCC----ccccCCCceEEEECCCCcEEE-EeC------CCCEEEEEEECCCCcEEEeeeEEcC
Confidence 1 111111000 0 000 001123467899999999555 333 45799999986 57655332 21
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC---CeeEEEEEec-cCC----CCcEEEEEEccCCCeeEEEE-
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN---GLERSSFDIN-EQI----DSTVELLKWNCMSDLLAAVV- 291 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n---Gl~~~~f~l~-~~~----~~~V~~laWSpDg~~LAs~~- 291 (1196)
.......++|+|||++|++++.. ...|.+|+.+ |.......+. .+. ...+..++|||||+.|+++.
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~-----~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGEL-----SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCceEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 22245789999999977776543 3578888754 4332211222 111 14588999999999886554
Q ss_pred ccCCcceEEEEEec-CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecC-CcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 292 RFEEYDSVKICFFS-NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLD-GQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~-g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
.++ +|.+|++. +..+...+.+..+...+..+.|+|++.. |.+...+ +.+. +|.+++. .|...
T Consensus 260 ~~~---~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~-l~v~~~~~~~v~----v~~~d~~--------tg~l~ 323 (347)
T 3hfq_A 260 GYN---TLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF-VVVVNQNTDNAT----LYARDLT--------SGKLS 323 (347)
T ss_dssp TTT---EEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE-EEEEETTTTEEE----EEEECTT--------TCCEE
T ss_pred CCC---EEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE-EEEEEcCCCcEE----EEEEeCC--------CCeEE
Confidence 455 89999986 3333333334332223478999999875 5666543 5443 3333221 12222
Q ss_pred EEeeccccCCCCCceeeeecC
Q 000992 370 LVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~ 390 (1196)
.+.. ...+|.|-|...++|
T Consensus 324 ~~~~--~~~~p~p~~~~~~~~ 342 (347)
T 3hfq_A 324 LLQK--DVTVPEGVCVRFLEH 342 (347)
T ss_dssp EEEE--EEECTTEEEEEECC-
T ss_pred eccc--ceecCCCcEEEehhh
Confidence 1111 124678888777764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=185.76 Aligned_cols=275 Identities=15% Similarity=0.050 Sum_probs=171.4
Q ss_pred EEEEECCCcEEEEECC-CCeEE---EeeeecCcEEEEEECCCCCEEEEEeCC-ceEEEEeccCc--eeeeeecccccCcc
Q 000992 90 LIVGTSSGLLLLHSVD-GNATE---VVGRVEGGVRFISPSPDGDLLGVTTGF-GQILVMTHDWD--LLYENPLEELAEGF 162 (1196)
Q Consensus 90 La~as~dG~I~lw~~~-~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d-~tV~l~~~~~d--~~~~~~l~~~~~~~ 162 (1196)
+++++.+|.|.+|+.+ ++..+ ... +...+.+++|||||+.|++++.+ +.|.+|+.+-+ .... +....
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~--- 81 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF--AAESA--- 81 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--EEEEE---
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEe-cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee--ccccc---
Confidence 3344779999999985 34333 233 45678999999999999999886 89999874311 1111 10000
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC---cEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG---TLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G---~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
. ...+..++|+|||++++ +++. .++.|++||..+| +........ ..+..++|+|+|++|++
T Consensus 82 --------~-~~~~~~~~~s~dg~~l~-~~~~-----~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~ 145 (343)
T 1ri6_A 82 --------L-PGSLTHISTDHQGQFVF-VGSY-----NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWV 145 (343)
T ss_dssp --------C-SSCCSEEEECTTSSEEE-EEET-----TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEE
T ss_pred --------c-CCCCcEEEEcCCCCEEE-EEec-----CCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEE
Confidence 0 12457899999999887 4542 3689999998433 444444433 34689999999998888
Q ss_pred EecCCCCCCCCeEEEEeCC--CeeEEEE--EeccCCCCcEEEEEEccCCCeeEEEE-ccCCcceEEEEEec--CCEEEEE
Q 000992 240 VYDRKSENKCPSIVFYERN--GLERSSF--DINEQIDSTVELLKWNCMSDLLAAVV-RFEEYDSVKICFFS--NNHWYLK 312 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~n--Gl~~~~f--~l~~~~~~~V~~laWSpDg~~LAs~~-~d~~~~~V~lW~~~--n~~wylk 312 (1196)
++.. ...|.+|+.+ |...... .+..+....+..++|+|||+.|++++ .++ .|++|++. +..+...
T Consensus 146 ~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~---~i~~~~~~~~~g~~~~~ 217 (343)
T 1ri6_A 146 PALK-----QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS---SVDVWELKDPHGNIECV 217 (343)
T ss_dssp EEGG-----GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT---EEEEEESSCTTSCCEEE
T ss_pred ecCC-----CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCcEEEE
Confidence 8732 2479999864 4332211 22222234688999999999887766 555 89999984 3433223
Q ss_pred EEEEEecC------CcEEEEEccCCCceEEEEe-cCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 313 YEIRYLRR------DGIRFMWHPTKPLQLICWT-LDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 313 q~l~~~~~------~~~~v~Wsp~~~~~L~~~~-~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
+.+...+. ....+.|+|++.. |.+.. .+|.+. .|++... +..... .
T Consensus 218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~-l~v~~~~~~~i~----v~d~~~~---------~~~~~~-------------~ 270 (343)
T 1ri6_A 218 QTLDMMPENFSDTRWAADIHITPDGRH-LYACDRTASLIT----VFSVSED---------GSVLSK-------------E 270 (343)
T ss_dssp EEEECSCTTCCSCCCEEEEEECTTSSE-EEEEETTTTEEE----EEEECTT---------SCCEEE-------------E
T ss_pred eeccccCccccccCCccceEECCCCCE-EEEEecCCCEEE----EEEEcCC---------CCceEE-------------e
Confidence 33331111 1246899999875 44443 345443 3333210 111110 0
Q ss_pred eeecCCCCEEEEEEecCCCCCEEEEEE-CCCcEEEEeCC
Q 000992 386 FSLKFPTAVTEMAFYSKSSKNCLAAIL-SDGCLCVVDLP 423 (1196)
Q Consensus 386 ~~l~~~~~V~~Vafspdg~~~~lAs~~-~dg~v~lw~~~ 423 (1196)
..+.....+.+++|+|+| +.|++++ .++.|.+|+++
T Consensus 271 ~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 271 GFQPTETQPRGFNVDHSG--KYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECSSSCCCEEECTTS--SEEEEECTTTCEEEEEEEE
T ss_pred eeecCCCccceEEECCCC--CEEEEecCCCCeEEEEEEc
Confidence 112222336789999999 8888777 57999999765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=212.54 Aligned_cols=275 Identities=11% Similarity=-0.015 Sum_probs=174.3
Q ss_pred CEEEEEEccCCCEEEEEEC-CCcEEEEECCCCeEEEeeeec-CcEEEEEECCCCCEEEEEeC---CceEEEEecc-Ccee
Q 000992 77 SITAFDYLMEKEALIVGTS-SGLLLLHSVDGNATEVVGRVE-GGVRFISPSPDGDLLGVTTG---FGQILVMTHD-WDLL 150 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~-dG~I~lw~~~~~~~e~vg~~~-~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~-~d~~ 150 (1196)
.|.+++|+|||+.||+++. ||++.||+.+++....+..+. ..|.+++|||| ++|++++. +....+|..+ |+.-
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 6999999999999999987 999999999888776444444 68999999999 77777764 4555665422 1111
Q ss_pred eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 151 YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 151 ~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
....+... ......+|+|||+.++.+++ .+..+.|||..+|++........ .+++|
T Consensus 102 ~~~~l~~~---------------~~~~~~~~s~dg~~~~~~s~------~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 102 EEQRLEAV---------------KPMRILSGVDTGEAVVFTGA------TEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp CCEECTTS---------------CSBEEEEEEECSSCEEEEEE------CSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred ccccccCC---------------CCceeeeeCCCCCeEEEEec------CCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 11122111 12346689988875441222 12344499998887766554332 78999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
||||++||+++.+.. ....|.+|+..+.... .+. .+...+.+++|||||+.||++..++ ...|.+|+..+....
T Consensus 158 spDG~~la~~~~~~~--~~~~i~~~d~~~g~~~--~l~-~~~~~~~~~~~SpDG~~l~~~~~~~-~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGG--GRVSLFTSNLSSGGLR--VFD-SGEGSFSSASISPGMKVTAGLETAR-EARLVTVDPRDGSVE 231 (582)
T ss_dssp EEETTEEEEEEEEET--TEEEEEEEETTTCCCE--EEC-CSSCEEEEEEECTTSCEEEEEECSS-CEEEEEECTTTCCEE
T ss_pred CCCCCEEEEEEEcCC--CCeEEEEEcCCCCCce--Eee-cCCCccccceECCCCCEEEEccCCC-eeEEEEEcCCCCcEE
Confidence 999999998876532 1246888995432222 233 2345789999999999999555443 236999998875431
Q ss_pred EEEEEEEecCCcEEEE--------EccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 311 LKYEIRYLRRDGIRFM--------WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~--------Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
.+..+......+. |+|++ ..+...+.+|.+. +|.+ +....
T Consensus 232 ---~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~-------------------------l~~~-g~~~~-- 279 (582)
T 3o4h_A 232 ---DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSA-------------------------VFID-GERVE-- 279 (582)
T ss_dssp ---ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEE-------------------------EEET-TEEEC--
T ss_pred ---EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEE-------------------------EEEE-CCeec--
Confidence 1211111112334 99998 5455555555332 2222 11000
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCCc---EEEEeCC
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGC---LCVVDLP 423 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~---v~lw~~~ 423 (1196)
...+.|.+++|| || +.+++++.+.+ |.+|+..
T Consensus 280 ------~~~~~v~~~~~s-dg--~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 280 ------APQGNHGRVVLW-RG--KLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ------CCSSEEEEEEEE-TT--EEEEEEEETTEEEEEEEETTC
T ss_pred ------cCCCceEEEEec-CC--EEEEEEcCCCCCCeEEEEcCC
Confidence 123568899999 88 78888887754 5555543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-17 Score=184.18 Aligned_cols=288 Identities=10% Similarity=-0.003 Sum_probs=172.3
Q ss_pred EEccCCCE-EEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEecc-Cce-eeeeecc
Q 000992 82 DYLMEKEA-LIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHD-WDL-LYENPLE 156 (1196)
Q Consensus 82 ~~spd~~~-La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~-~d~-~~~~~l~ 156 (1196)
.|.++++. +++.+.+|+|.+||..++++. ........+ +++|||||+.|++++. +++|.+|+.. ... ......
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~- 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE- 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE-
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc-
Confidence 35565555 667778999999999987664 333224456 9999999997777765 8899888643 222 111111
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
+......++|+|||++++ ++..+ .....|++||..+|+......... ....++|+|||++
T Consensus 82 ---------------~~~~~~~~~~s~dg~~l~-~~~~~---~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~ 141 (331)
T 3u4y_A 82 ---------------GQSSMADVDITPDDQFAV-TVTGL---NHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNG 141 (331)
T ss_dssp ---------------CSSCCCCEEECTTSSEEE-ECCCS---SSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSC
T ss_pred ---------------CCCCccceEECCCCCEEE-EecCC---CCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCE
Confidence 111223399999999998 55421 012299999998898887765433 4589999999997
Q ss_pred EEEEecCCCCCCCCe-EEEEeCC--CeeE-EE-EEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCEE-
Q 000992 237 IAAVYDRKSENKCPS-IVFYERN--GLER-SS-FDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNHW- 309 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~-V~~~e~n--Gl~~-~~-f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~w- 309 (1196)
|+++..+. .. |.+|+.+ |... .. ..+ +....+..++|||||+.|+++.. ++ .|++|+..+...
T Consensus 142 l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~---~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 142 LILIDRSS-----ANTVRRFKIDADGVLFDTGQEFI--SGGTRPFNITFTPDGNFAFVANLIGN---SIGILETQNPENI 211 (331)
T ss_dssp EEEEEETT-----TTEEEEEEECTTCCEEEEEEEEE--CSSSSEEEEEECTTSSEEEEEETTTT---EEEEEECSSTTSC
T ss_pred EEEEecCC-----CceEEEEEECCCCcEeecCCccc--cCCCCccceEECCCCCEEEEEeCCCC---eEEEEECCCCccc
Confidence 76665532 35 8888854 2221 11 112 22345889999999997766654 55 899999986543
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL 388 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l 388 (1196)
.....+.. ......+.|+|++.. |.+... ++.+ ..|+.. . |....+..+.......|.
T Consensus 212 ~~~~~~~~-~~~~~~~~~spdg~~-l~v~~~~~~~i----~~~d~~--~--------~~~~~~~~~~~~~~~~~~----- 270 (331)
T 3u4y_A 212 TLLNAVGT-NNLPGTIVVSRDGST-VYVLTESTVDV----FNFNQL--S--------GTLSFVKSFGHGLLIDPR----- 270 (331)
T ss_dssp EEEEEEEC-SSCCCCEEECTTSSE-EEEECSSEEEE----EEEETT--T--------TEEEEEEEEECCCCCCCG-----
T ss_pred ceeeeccC-CCCCceEEECCCCCE-EEEEEcCCCEE----EEEECC--C--------CceeeecccccccccCCC-----
Confidence 00122321 122367899999875 444432 2222 123321 1 111111121111100010
Q ss_pred cCCCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCCC
Q 000992 389 KFPTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPAP 425 (1196)
Q Consensus 389 ~~~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~~ 425 (1196)
....+..++|+||| +.|++++. +++|.+|++.++
T Consensus 271 -~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 271 -PLFGANQMALNKTE--TKLFISANISRELKVFTISGK 305 (331)
T ss_dssp -GGTTCCCEEECTTS--SEEEEEETTTTEEEEEETTSC
T ss_pred -CcccccceEECCCC--CEEEEecCCCCcEEEEEecCC
Confidence 01112578999999 78766655 569999999753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=217.75 Aligned_cols=258 Identities=10% Similarity=0.115 Sum_probs=159.5
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---------
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS--------- 95 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~--------- 95 (1196)
..+|.+++. +...+.++.|+.|+. .+++.. .+ +..+.. ....+.+++|||||+.|++++.
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~--~~g~~~-~~------~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNI--ETGQSY-TI------LSNRTM-KSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEES--SSCCEE-EE------ECHHHH-HTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEc--CCCcEE-EE------Eccccc-cccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 568889995 444456888999999 554431 11 111100 0013789999999999999987
Q ss_pred CCcEEEEECCCCeE---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 96 SGLLLLHSVDGNAT---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 96 dG~I~lw~~~~~~~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
+++|.+||.++++. ..+ ..++.+++|||||+.||+++ +++|.+|+....... .+........| +.++
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~--~l~~~~~~~~v----~~g~ 158 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPF--QITFNGRENKI----FNGI 158 (719)
T ss_dssp EEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCE--ECCCCCBTTTE----EESS
T ss_pred ceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcE--EEecCCCcCCe----Eccc
Confidence 79999999999876 433 35689999999999999997 679999864321111 11111100001 1111
Q ss_pred CC---------CeEEEEEccCCceEEEeecccccc----------------------------CCCCEEEEEECCCCcEE
Q 000992 173 FS---------FKSPISWRGDGKYFATLSEFCNSS----------------------------KLHKRLKVWERDSGTLQ 215 (1196)
Q Consensus 173 ~~---------~v~~isWspDG~~lAsvss~d~~~----------------------------~~d~~irVWd~~~G~l~ 215 (1196)
.+ ....++|||||++|| .++.+... ....+|++||..+|+..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~ 237 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLA-YAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV 237 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEE-EEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred ccceeeeecccCcccEEECCCCCEEE-EEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence 11 225899999999999 45533110 01238999999777642
Q ss_pred ---EE-----eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe----CCCeeEEEEEec---cCCCCcEE----
Q 000992 216 ---AS-----SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE----RNGLERSSFDIN---EQIDSTVE---- 276 (1196)
Q Consensus 216 ---~~-----~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e----~nGl~~~~f~l~---~~~~~~V~---- 276 (1196)
.. +.++.+.+.+++|||||+++++..... .....|.+|+ ..+..... .+. ..+...|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~--~~~~~l~~~d~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 238 GPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV--QNVSVLSICDFREDWQTWDCPK-TQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp CCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS--TTEEEEEEEEECSSSSSEECCG-GGEEEEECSSSCSSSSSC
T ss_pred ceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc--cCeEEEEEEcccCCCCCCceEE-EEecccccCCceEccccC
Confidence 22 234677789999999998877754321 1124577888 54321110 010 12334565
Q ss_pred -EEEEccCCCeeEEEEccC-CcceEEEEEecCC
Q 000992 277 -LLKWNCMSDLLAAVVRFE-EYDSVKICFFSNN 307 (1196)
Q Consensus 277 -~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~ 307 (1196)
.++|||||+.|+....+. +...|.+|+..+.
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 789999999888754332 2235777776554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-17 Score=207.62 Aligned_cols=206 Identities=13% Similarity=0.142 Sum_probs=137.9
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC-----cEEEEEECCCCCEEEEEeCCce---------EE
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG-----GVRFISPSPDGDLLGVTTGFGQ---------IL 141 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~-----~I~~~awSPDg~~LA~~s~d~t---------V~ 141 (1196)
...+++|+|||+.|+++ ||+|++||..+++.. ++..+.. .....+|||||+.||+++.+++ +.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 46689999999988886 999999999988764 4333332 2244899999999999998744 44
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-cc
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-EL 220 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~ 220 (1196)
+|+....... ++..+...+..++|||||+.||+ ++ ++.|++|+..+|+..... .+
T Consensus 96 ~~d~~~~~~~----------------~l~~~~~~~~~~~~SPdG~~la~-~~-------~~~i~~~~~~~~~~~~lt~~g 151 (740)
T 4a5s_A 96 IYDLNKRQLI----------------TEERIPNNTQWVTWSPVGHKLAY-VW-------NNDIYVKIEPNLPSYRITWTG 151 (740)
T ss_dssp EEETTTTEEC----------------CSSCCCTTEEEEEECSSTTCEEE-EE-------TTEEEEESSTTSCCEECCSCC
T ss_pred EEECCCCcEE----------------EcccCCCcceeeEECCCCCEEEE-EE-------CCeEEEEECCCCceEEEcCCC
Confidence 5543211111 11133456799999999999994 43 478999999788766532 23
Q ss_pred CCCce-----------------eEEEEcCCCCeEEEEecCCCC------------------------------CCCCeEE
Q 000992 221 KAFMG-----------------AVLEWMPSGANIAAVYDRKSE------------------------------NKCPSIV 253 (1196)
Q Consensus 221 ~~~~v-----------------~slawsPdG~~IAs~s~d~~~------------------------------~~~~~V~ 253 (1196)
....+ .+++|||||+.||+++.|.+. ....+|.
T Consensus 152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~ 231 (740)
T 4a5s_A 152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF 231 (740)
T ss_dssp BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence 22211 358999999999998765321 0112577
Q ss_pred EEeCCC---e---eEEEEEecc---CCCCcEEEEEEccCCCeeEEEEccCC-cceEEEEEecCCE
Q 000992 254 FYERNG---L---ERSSFDINE---QIDSTVELLKWNCMSDLLAAVVRFEE-YDSVKICFFSNNH 308 (1196)
Q Consensus 254 ~~e~nG---l---~~~~f~l~~---~~~~~V~~laWSpDg~~LAs~~~d~~-~~~V~lW~~~n~~ 308 (1196)
+|+.++ . ...+...+. .+...+.+++|||||++++......+ ...|.+|+..+..
T Consensus 232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 788765 3 222221111 13456899999999998887765432 2379999987653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=183.68 Aligned_cols=238 Identities=13% Similarity=0.114 Sum_probs=162.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccc-ccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE--CCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQ-NERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--SSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as--~dG~ 98 (1196)
.+.+++|.+++..|++++ ++.|+.|++ .. ++.. .+ ...+ ....|.+++|+|||+.|++++ .++.
T Consensus 43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~--~~~~~~~-~~------~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 43 LFEAPNWSPDGKYLLLNS-EGLLYRLSL--AGDPSPE-KV------DTGF---ATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp CCEEEEECTTSSEEEEEE-TTEEEEEES--SSCCSCE-EC------CCTT---CCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred ceEeeEECCCCCEEEEEc-CCeEEEEeC--CCCCCce-Ee------cccc---ccccccceEECCCCCEEEEEEeCCCCc
Confidence 688999999999999887 557999999 44 3321 11 1111 125688899999999999999 3345
Q ss_pred EEE--EECCCCeEEEeeeecCcEEEEEECCCCCEEE-EEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLL--HSVDGNATEVVGRVEGGVRFISPSPDGDLLG-VTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~l--w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA-~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
+.| |+..++....+.. ...+.+++|||||+.|+ +++.++++.+|..+.+.-....+ ..+...
T Consensus 110 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~ 174 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL--------------THGEGR 174 (297)
T ss_dssp CEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC--------------CCSSSC
T ss_pred ceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc--------------ccCCCc
Confidence 555 5556666554443 34599999999999988 56788989888633211111111 123356
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC-----CC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN-----KC 249 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~-----~~ 249 (1196)
+.+++|+|||++|+ +++. .++.++||+.. ++........+...+..++|+|+|++||+++.+.... ..
T Consensus 175 ~~~~~~s~dg~~l~-~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 248 (297)
T 2ojh_A 175 NDGPDYSPDGRWIY-FNSS-----RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLD 248 (297)
T ss_dssp EEEEEECTTSSEEE-EEEC-----TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEE
T ss_pred cccceECCCCCEEE-EEec-----CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCc
Confidence 78999999999988 4441 24677788753 4555666666777789999999999999887653100 12
Q ss_pred CeEEEEeCCCeeE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 250 PSIVFYERNGLER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 250 ~~V~~~e~nGl~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..|.+|+.++... ....+.. +...|..++|||||+.|++++.+.
T Consensus 249 ~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 249 VRVQLMDMDGGNVETLFDLFG-GQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEETTSCSCEEEEEEEE-STTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEEEEEecCCCCceeeeccCC-CCcccccceECCCCCEEEEEEecc
Confidence 4688999765332 2222222 245688999999999999998775
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-16 Score=179.34 Aligned_cols=282 Identities=8% Similarity=0.011 Sum_probs=185.5
Q ss_pred CCEEEEEEccCCCEEEEEEC-------CCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEec-
Q 000992 76 DSITAFDYLMEKEALIVGTS-------SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTH- 145 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~-------dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~- 145 (1196)
..+..++|+|||+.|++++. +|.|.+||..+++.. .+. ....+.+++|||||+.|++++ .+++|.+|+.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 46889999999999988874 568999999987654 333 345678899999999666654 5789988873
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
..+.+.....+....... ........++|+|||++++ ++.. ..++.|.+||..+|+.......+....
T Consensus 120 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~s~dg~~l~-~~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~ 187 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEE-------VRPLQPRELVADDATNTVY-ISGI----GKESVIWVVDGGNIKLKTAIQNTGKMS 187 (353)
T ss_dssp TCCEEEEEESCCCCCCSS-------CCCCEEEEEEEETTTTEEE-EEEE----SSSCEEEEEETTTTEEEEEECCCCTTC
T ss_pred CCeeEEEEecCCCccccc-------cCCCCCceEEECCCCCEEE-EEec----CCCceEEEEcCCCCceEEEecCCCCcc
Confidence 344444433321110000 0011257899999999887 5542 135889999998999888876455557
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
..++|+|+|+.|+++..+ ..|.+|+. +|.....+..... ....+..++|+|||+.|+++..+. +.|.+|+
T Consensus 188 ~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--~~v~~~d 259 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA--AEVLVVD 259 (353)
T ss_dssp CCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS--SEEEEEE
T ss_pred ceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC--CEEEEEE
Confidence 899999999999988764 46889995 4544444433211 234588999999999888877652 2899999
Q ss_pred ecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
..+... ...+.. .....+.|+|++.. +.+... ++.+. .|+.. .+..+
T Consensus 260 ~~~~~~--~~~~~~--~~~~~~~~s~dg~~-l~v~~~~~~~v~----~~d~~----------~~~~~------------- 307 (353)
T 3vgz_A 260 TRNGNI--LAKVAA--PESLAVLFNPARNE-AYVTHRQAGKVS----VIDAK----------SYKVV------------- 307 (353)
T ss_dssp TTTCCE--EEEEEC--SSCCCEEEETTTTE-EEEEETTTTEEE----EEETT----------TTEEE-------------
T ss_pred CCCCcE--EEEEEc--CCCceEEECCCCCE-EEEEECCCCeEE----EEECC----------CCeEE-------------
Confidence 987653 223332 22356889998865 444442 33332 22211 11111
Q ss_pred ceeeeecCCCCEEEEEEecCCCCCEEEEEECCC
Q 000992 383 MYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDG 415 (1196)
Q Consensus 383 m~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg 415 (1196)
..+.....+.+++|+||| +.|.+...++
T Consensus 308 ---~~~~~~~~~~~~~~s~dg--~~l~v~~~~~ 335 (353)
T 3vgz_A 308 ---KTFDTPTHPNSLALSADG--KTLYVSVKQK 335 (353)
T ss_dssp ---EEEECCSEEEEEEECTTS--CEEEEEEECC
T ss_pred ---EEEecCCCCCeEEEcCCC--CEEEEEEccc
Confidence 122334467899999999 7777665553
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-16 Score=177.18 Aligned_cols=265 Identities=9% Similarity=-0.012 Sum_probs=183.2
Q ss_pred ceeEEeeecCCCEEEEEeC-------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASS-------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as 94 (1196)
.+..++++++++.+|+++. ++.|+.||. .+++....+ + . +..+.+++|+|||+.++++.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~--~~~~~~~~~---~-------~--~~~~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP--VTLEVTQAI---H-------N--DLKPFGATINNTTQTLWFGN 107 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT--TTCCEEEEE---E-------E--SSCCCSEEEETTTTEEEEEE
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC--CCCeEEEEE---e-------c--CCCcceEEECCCCCEEEEEe
Confidence 5678899999999999874 457999998 554432221 1 1 23577899999999666554
Q ss_pred -CCCcEEEEECCCCeEE-EeeeecC---------cEEEEEECCCCCEEEEEe--CCceEEEEec-cCceeeeeecccccC
Q 000992 95 -SSGLLLLHSVDGNATE-VVGRVEG---------GVRFISPSPDGDLLGVTT--GFGQILVMTH-DWDLLYENPLEELAE 160 (1196)
Q Consensus 95 -~dG~I~lw~~~~~~~e-~vg~~~~---------~I~~~awSPDg~~LA~~s--~d~tV~l~~~-~~d~~~~~~l~~~~~ 160 (1196)
.++.|.+||..++++. .+....+ .+.+++|||||+.|++++ .++.|.+|+. .+..+.....
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~----- 182 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN----- 182 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-----
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-----
Confidence 4799999999887653 3332111 278999999999988887 3778988863 2333322221
Q ss_pred ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc----CCCceeEEEEcCCCCe
Q 000992 161 GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL----KAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~----~~~~v~slawsPdG~~ 236 (1196)
+......++|+|||++++ ++. .++.|.+||..+|+....... +......++|+|+|+.
T Consensus 183 -----------~~~~~~~~~~s~dg~~l~-~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 183 -----------TGKMSTGLALDSEGKRLY-TTN------ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp -----------CCTTCCCCEEETTTTEEE-EEC------TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred -----------CCCccceEEECCCCCEEE-EEc------CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE
Confidence 112346799999999988 564 357999999989988876543 3445678999999998
Q ss_pred EEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCEEEEEEE
Q 000992 237 IAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
|+.+... ...|.+|+. +|.....+.+. . ...++|+|||+.|.++.. ++ +|.+|+..+... .+.
T Consensus 245 l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~--~---~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~~--~~~ 309 (353)
T 3vgz_A 245 AFITDSK-----AAEVLVVDTRNGNILAKVAAP--E---SLAVLFNPARNEAYVTHRQAG---KVSVIDAKSYKV--VKT 309 (353)
T ss_dssp EEEEESS-----SSEEEEEETTTCCEEEEEECS--S---CCCEEEETTTTEEEEEETTTT---EEEEEETTTTEE--EEE
T ss_pred EEEEeCC-----CCEEEEEECCCCcEEEEEEcC--C---CceEEECCCCCEEEEEECCCC---eEEEEECCCCeE--EEE
Confidence 8777654 357999996 45444433322 1 246999999997777664 55 899999987653 233
Q ss_pred EEEecCCcEEEEEccCCCceEEEEec
Q 000992 315 IRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 315 l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
+... .....+.|+|++.. |.+...
T Consensus 310 ~~~~-~~~~~~~~s~dg~~-l~v~~~ 333 (353)
T 3vgz_A 310 FDTP-THPNSLALSADGKT-LYVSVK 333 (353)
T ss_dssp EECC-SEEEEEEECTTSCE-EEEEEE
T ss_pred EecC-CCCCeEEEcCCCCE-EEEEEc
Confidence 3321 22378899999875 455443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=181.13 Aligned_cols=264 Identities=10% Similarity=-0.014 Sum_probs=167.2
Q ss_pred EeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC-CCcEEEEE
Q 000992 26 SALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS-SGLLLLHS 103 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~-dG~I~lw~ 103 (1196)
..|+.+++.+|+.+ .++.|..||. .+++....+ + .+...+ +++|+|||+.|++++. ++.|.+||
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~--~~~~~~~~~---~--------~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d 68 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFST--DTLEILNQI---T--------LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE 68 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEET--TTCCEEEEE---E--------CCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeC--cccceeeeE---E--------ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence 45778888888774 4778999998 555432111 1 112356 9999999997777766 88999999
Q ss_pred CCCCeE--EEeeeecCcEEEEEECCCCCEEEEEeCCc---eEEEEecc-CceeeeeecccccCccccccCccccCCCCeE
Q 000992 104 VDGNAT--EVVGRVEGGVRFISPSPDGDLLGVTTGFG---QILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 104 ~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~---tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
..++++ .....+...+.+++|||||++|+++..++ +|.+|+.. ...+..... .....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------------~~~~~ 131 (331)
T 3u4y_A 69 TQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------------PYDAV 131 (331)
T ss_dssp CSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------------CTTEE
T ss_pred CCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------------CCCcc
Confidence 988764 34444344444499999999999554442 89998742 333322221 12347
Q ss_pred EEEEccCCceEEEeeccccccCCCCE-EEEEECCC-CcEEEE---eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKR-LKVWERDS-GTLQAS---SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~-irVWd~~~-G~l~~~---~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.++|+|||++++ ++.. .++. |++|+... |.+... ..........++|+|||++++.+... ...|
T Consensus 132 ~~~~spdg~~l~-~~~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLI-LIDR-----SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-----GNSI 200 (331)
T ss_dssp EEEECTTSSCEE-EEEE-----TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT-----TTEE
T ss_pred ceEECCCCCEEE-EEec-----CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC-----CCeE
Confidence 999999999776 4432 2355 99999753 333211 11233446899999999977666543 3579
Q ss_pred EEEeCC-Cee---EEEEEeccCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCEEEEEEEEEEe----cCCc-
Q 000992 253 VFYERN-GLE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNHWYLKYEIRYL----RRDG- 322 (1196)
Q Consensus 253 ~~~e~n-Gl~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~wylkq~l~~~----~~~~- 322 (1196)
.+|+.. |.. ... ++ ....+..++|||||+.|+++.. ++ .|.+|+..+......+.+... +...
T Consensus 201 ~v~d~~~~~~~~~~~~--~~--~~~~~~~~~~spdg~~l~v~~~~~~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 201 GILETQNPENITLLNA--VG--TNNLPGTIVVSRDGSTVYVLTESTV---DVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp EEEECSSTTSCEEEEE--EE--CSSCCCCEEECTTSSEEEEECSSEE---EEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred EEEECCCCcccceeee--cc--CCCCCceEEECCCCCEEEEEEcCCC---EEEEEECCCCceeeecccccccccCCCCcc
Confidence 999964 443 222 32 2245778999999998877654 33 799999988764333333211 1001
Q ss_pred --EEEEEccCCCceEEEEe
Q 000992 323 --IRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 323 --~~v~Wsp~~~~~L~~~~ 339 (1196)
..+.|+|++.. |.+.+
T Consensus 274 ~~~~~~~spdg~~-l~v~~ 291 (331)
T 3u4y_A 274 GANQMALNKTETK-LFISA 291 (331)
T ss_dssp TCCCEEECTTSSE-EEEEE
T ss_pred cccceEECCCCCE-EEEec
Confidence 23688988865 44444
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=182.90 Aligned_cols=245 Identities=12% Similarity=0.113 Sum_probs=160.9
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG 97 (1196)
.+..++|++++. ||+++. ++.|+.|++ ..+..+ .+.+ +..+ ...+..++|+|||+.|++++ .+|
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~--~~g~~~-~~~~----~~~~----~~~p~~~a~spdg~~l~~~~~~~~ 108 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQI--DGQTAH-KLNT----VVAP----GTPPAYVAVDEARQLVYSANYHKG 108 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEE--ETTEEE-EEEE----EEEE----SCCCSEEEEETTTTEEEEEETTTT
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEe--cCCcEE-Eeee----eecC----CCCCEEEEECCCCCEEEEEeCCCC
Confidence 567799999999 888875 578999998 444321 1211 1111 35688999999999999888 789
Q ss_pred cEEEEECC-CCeEEEeeeec------------CcEEEEEECCCCCEEEEEeCCceEEEEecc--CceeeeeecccccCcc
Q 000992 98 LLLLHSVD-GNATEVVGRVE------------GGVRFISPSPDGDLLGVTTGFGQILVMTHD--WDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 ~I~lw~~~-~~~~e~vg~~~------------~~I~~~awSPDg~~LA~~s~d~tV~l~~~~--~d~~~~~~l~~~~~~~ 162 (1196)
+|.+|+.+ ++....+..+. ..+.+++|||||+++++..++++|.+|+.. ...........
T Consensus 109 ~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~----- 183 (347)
T 3hfq_A 109 TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM----- 183 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----
T ss_pred EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc-----
Confidence 99999985 34443222211 248899999999966666678899998743 11111000000
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEE--EeccCC------CceeEEEEcC
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQA--SSELKA------FMGAVLEWMP 232 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~--~~e~~~------~~v~slawsP 232 (1196)
........++|+|||++++ ++. ..++.|++|+.+ +|++.. ...... .....++|+|
T Consensus 184 --------~~g~~p~~~~~spdg~~l~-v~~-----~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 184 --------EAGFGPRHLVFSPDGQYAF-LAG-----ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp --------CTTCCEEEEEECTTSSEEE-EEE-----TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred --------CCCCCCceEEECCCCCEEE-EEe-----CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 0112457899999999877 443 246899999874 366432 222111 3468899999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
||++|+.+... ...|.+|+.+ |.......++.+ ...+..++|||||+.|+++..+. +.|++|++.
T Consensus 250 dG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~--~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNT--DNATLYARD 316 (347)
T ss_dssp TSCEEEEEEET-----TTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEEEEEETTT--TEEEEEEEC
T ss_pred CCCEEEEEeCC-----CCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEEEEEEcCC--CcEEEEEEe
Confidence 99988655443 3579999864 422211122221 23578999999999999988753 289999654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=209.67 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=167.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEccCCCEEEEEECC----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLMEKEALIVGTSS---- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~spd~~~La~as~d---- 96 (1196)
.....+|.+|+..|++. ++.|+.|+. .+++.. .+ +..+.+.. .....+++|||||+.|++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~--~~~~~~-~~------~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNA--EYGNSS-VF------LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEET--TTCCEE-EE------ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEEC--CCCceE-EE------EechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 34568899999877775 788999999 555532 11 22222211 1123568999999999999876
Q ss_pred -----CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCcccc
Q 000992 97 -----GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 97 -----G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
|++.+||..++++..+..+.+.+..++|||||+.||+++ +++|.+|+...... ..+........+ +.+
T Consensus 87 r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~--~~lt~~g~~~~~----~~g 159 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS--YRITWTGKEDII----YNG 159 (740)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC--EECCSCCBTTTE----EES
T ss_pred EEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCce--EEEcCCCCccce----ecC
Confidence 677899999998775555677899999999999999996 57898886432211 122111100000 111
Q ss_pred CC---------CCeEEEEEccCCceEEEeeccccc------------------------------cCCCCEEEEEECCC-
Q 000992 172 SF---------SFKSPISWRGDGKYFATLSEFCNS------------------------------SKLHKRLKVWERDS- 211 (1196)
Q Consensus 172 ~~---------~~v~~isWspDG~~lAsvss~d~~------------------------------~~~d~~irVWd~~~- 211 (1196)
+. .....++|||||++||+ .+.+.. .....+|+|||..+
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~-~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAY-AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEE-EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSC
T ss_pred cccccccchhcCCCcceEECCCCCEEEE-EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCC
Confidence 11 12246899999999994 432211 00112689999977
Q ss_pred --C---cEEEEec-----cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEE----EEe-ccCCCCcE
Q 000992 212 --G---TLQASSE-----LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSS----FDI-NEQIDSTV 275 (1196)
Q Consensus 212 --G---~l~~~~e-----~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~----f~l-~~~~~~~V 275 (1196)
| +...... +++..+..++|||||++++....... ....|.+|+.+ |..... ..+ ...+..+|
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~--~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v 316 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ--NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWV 316 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST--TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC--CEEEEEEEECCCCccccceeEEEEeeeccCCceE
Confidence 6 4444433 26778899999999998877654321 13468888854 320000 001 11123344
Q ss_pred E-----EEEEccCCCeeE-EEEccCCcceEEEEEecCC
Q 000992 276 E-----LLKWNCMSDLLA-AVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 276 ~-----~laWSpDg~~LA-s~~~d~~~~~V~lW~~~n~ 307 (1196)
. +++|||||+.|+ ..+...+...|.+|+..+.
T Consensus 317 ~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 317 GRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp SSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 4 789999999998 6665544446888887653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-15 Score=177.53 Aligned_cols=243 Identities=11% Similarity=0.016 Sum_probs=154.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECC-CCeEEEeeeec--CcEEEEEECCCCCE--EEEEe-------------CC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVD-GNATEVVGRVE--GGVRFISPSPDGDL--LGVTT-------------GF 137 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~-~~~~e~vg~~~--~~I~~~awSPDg~~--LA~~s-------------~d 137 (1196)
..+..++|+|||+.|++++.+ +|.+|+.+ ++++.....+. +...+++|||||+. |+++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 357889999999999999887 99999986 66654222222 33566899999995 44443 68
Q ss_pred ceEEEEecc--CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcE
Q 000992 138 GQILVMTHD--WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTL 214 (1196)
Q Consensus 138 ~tV~l~~~~--~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l 214 (1196)
+++.+|..+ +........... .+...+..++|+|||++++ ++.. ++.+|++|+.+ +|++
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~spdG~~l~-~~~~-----~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEY------------QENTGIHGMVFDPTETYLY-SADL-----TANKLWTHRKLASGEV 180 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEEC------------CTTCCEEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTSCE
T ss_pred ceEEEEccCCCCcCcceEeeEEe------------CCCCcceEEEECCCCCEEE-EEcC-----CCCEEEEEEECCCCCE
Confidence 889888643 322211111000 1124568999999999888 5542 35799999997 7876
Q ss_pred EEE--ec--cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC---CCeeE---EEEE-eccC--CCC-------c
Q 000992 215 QAS--SE--LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER---NGLER---SSFD-INEQ--IDS-------T 274 (1196)
Q Consensus 215 ~~~--~e--~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~---nGl~~---~~f~-l~~~--~~~-------~ 274 (1196)
... .. .+......++|+|||++|+++... ...|.+|+. +|... ..+. ++.. ... .
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-----~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEECC-----CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 432 22 123457899999999999888754 357888864 35432 1111 2211 112 5
Q ss_pred EEEEE-EccCCCeeEEEEccCC---cceEEEEEec-CCEEEEEEE---EEEecCCcEEEEEcc---CCCceEEEEec-CC
Q 000992 275 VELLK-WNCMSDLLAAVVRFEE---YDSVKICFFS-NNHWYLKYE---IRYLRRDGIRFMWHP---TKPLQLICWTL-DG 342 (1196)
Q Consensus 275 V~~la-WSpDg~~LAs~~~d~~---~~~V~lW~~~-n~~wylkq~---l~~~~~~~~~v~Wsp---~~~~~L~~~~~-~g 342 (1196)
+..++ |||||+.|+++..+.. .++|++|++. +.. +... +......+..+.|+| ++.. |.+.+. ++
T Consensus 256 ~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~--~~~~~~~~~~~~~~~~~~a~sp~~~dg~~-l~v~~~~~~ 332 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--IEKQLFLSPTPTSGGHSNAVSPCPWSDEW-MAITDDQEG 332 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--EEEEEEEEECSSCCTTCCCEEECTTCTTE-EEEECSSSC
T ss_pred cccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC--EEEeeeeeecCCCCcccceecCCCcCCCE-EEEEEcCCC
Confidence 88999 9999999988765431 1179999986 443 2221 211222335678999 6654 666654 35
Q ss_pred cEE
Q 000992 343 QIT 345 (1196)
Q Consensus 343 ~~~ 345 (1196)
.+.
T Consensus 333 ~v~ 335 (365)
T 1jof_A 333 WLE 335 (365)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-16 Score=186.10 Aligned_cols=213 Identities=11% Similarity=0.065 Sum_probs=149.8
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCC-----------CeEE-----EeeeecCcEEEEEECCCCCEEE----EE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDG-----------NATE-----VVGRVEGGVRFISPSPDGDLLG----VT 134 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~-----------~~~e-----~vg~~~~~I~~~awSPDg~~LA----~~ 134 (1196)
...+..+++++++..|++++.+| |++|+... ..+. ..-.+.+.|.+++|||||++|| ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 44688899999999999999998 88876421 1111 0112356799999999999999 67
Q ss_pred eCCceEEEEeccCceeeeeecccccCccccc-cCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCC
Q 000992 135 TGFGQILVMTHDWDLLYENPLEELAEGFDVH-EPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSG 212 (1196)
Q Consensus 135 s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs-~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G 212 (1196)
+.|++|++|+..-. ..+.. . ..+.+. ...+.+|.+.|.+++|+|+ +.+|| +++ .|++|+|||..++
T Consensus 115 s~d~~v~iwd~~~~-~~~~~-~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~la-s~s------~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 115 EYGSIIAFFDVRTF-SNEAK-Q---QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVA-VCL------ADGSIAVLQVTET 182 (434)
T ss_dssp TTEEEEEEEEHHHH-HCTTC-S---SCCCSEEEECCCSGGGSEEEEEECSSCTTEEE-EEE------TTSCEEEEEESSS
T ss_pred CCCceEEEEEcccc-ccCCc-C---CcceeeeeeccCCCCCceEEEEECCCCCCEEE-EEE------CCCeEEEEEcCCC
Confidence 88999999863210 00000 0 000000 0123356778999999998 88999 565 4699999999888
Q ss_pred cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC----CCCcEEEEEEccCCCeeE
Q 000992 213 TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ----IDSTVELLKWNCMSDLLA 288 (1196)
Q Consensus 213 ~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~----~~~~V~~laWSpDg~~LA 288 (1196)
.......+|...+.+++|+|+|++||+++.|+ .|++|+..|.....+..+.. +...|.+++|++++.+++
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG------TVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTSSCEEEEETTS------CEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred cceeeccCCCCceeEEEEcCCCCEEEEEcCCC------cEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 77666667888899999999999999999864 69999987654443332211 123799999999999987
Q ss_pred EEEccCC----cceEEEEEecC
Q 000992 289 AVVRFEE----YDSVKICFFSN 306 (1196)
Q Consensus 289 s~~~d~~----~~~V~lW~~~n 306 (1196)
+.+...+ ...+++|++.+
T Consensus 257 ~~~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 257 VYAAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EEEETTCCSSSCCEEEEEECCC
T ss_pred EEccCCCccCCCCceEEEEecc
Confidence 7554321 12599999864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-15 Score=170.07 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=168.5
Q ss_pred cCCCEEEEEE----CCCcEEEEEC--CCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCc--eee
Q 000992 85 MEKEALIVGT----SSGLLLLHSV--DGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWD--LLY 151 (1196)
Q Consensus 85 pd~~~La~as----~dG~I~lw~~--~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d--~~~ 151 (1196)
+....+.+|+ .++.|.+|.. .+++++.+.. +......++|||||++|++++.+ +.|.+|..+-+ .+.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3334445553 4568999865 5566543222 45667889999999999999886 78988864321 111
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEEEE-----ecc-----
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQAS-----SEL----- 220 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~~~-----~e~----- 220 (1196)
. +.... .+......++| ||++++ ++.. .+++|.+|+..+ |.+... ..+
T Consensus 91 ~--~~~~~-----------~~~~~p~~~~~--dg~~l~-~~~~-----~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~ 149 (361)
T 3scy_A 91 L--LNTQK-----------TMGADPCYLTT--NGKNIV-TANY-----SGGSITVFPIGQDGALLPASDVIEFKGSGPDK 149 (361)
T ss_dssp E--EEEEE-----------CSSSCEEEEEE--CSSEEE-EEET-----TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCT
T ss_pred E--eeEec-----------cCCCCcEEEEE--CCCEEE-EEEC-----CCCEEEEEEeCCCCcCcccceeEEccCCCCCc
Confidence 1 11000 11234467888 999888 5542 468999999853 332111 111
Q ss_pred ---CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC--C-------eeEE-E-EEeccCCCCcEEEEEEccCCCe
Q 000992 221 ---KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN--G-------LERS-S-FDINEQIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 221 ---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n--G-------l~~~-~-f~l~~~~~~~V~~laWSpDg~~ 286 (1196)
.....++++|+|||++|+++... ...|.+|+.+ + +... . -....+....+..++|||||+.
T Consensus 150 ~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 150 ERQTMPHLHCVRITPDGKYLLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp TTCSSCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred cccCCCcceEEEECCCCCEEEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 12234789999999987776643 3578889643 2 2111 0 0112222345889999999999
Q ss_pred eEEEEc-cCCcceEEEEEecCCEEEEEEEEEEecC---CcEEEEEccCCCceEEEEecC--CcEEEEEEEEeeecCCCee
Q 000992 287 LAAVVR-FEEYDSVKICFFSNNHWYLKYEIRYLRR---DGIRFMWHPTKPLQLICWTLD--GQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 287 LAs~~~-d~~~~~V~lW~~~n~~wylkq~l~~~~~---~~~~v~Wsp~~~~~L~~~~~~--g~~~~~~~~~~~~~~d~~~ 360 (1196)
|+++.. ++ .|++|+..+..+...+.+..... ....+.|+|++.. |.+...+ +.+. +|++++.
T Consensus 225 l~v~~~~~~---~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~-l~v~~~~~~~~i~----v~~~~~~---- 292 (361)
T 3scy_A 225 AYLINEIGG---TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY-LYASNRLKADGVA----IFKVDET---- 292 (361)
T ss_dssp EEEEETTTC---EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE-EEEEECSSSCEEE----EEEECTT----
T ss_pred EEEEcCCCC---eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE-EEEECCCCCCEEE----EEEEcCC----
Confidence 988874 55 89999998766543444432221 1267899999875 5454433 3333 2333211
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE-CCCcEEEEeCCC
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL-SDGCLCVVDLPA 424 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~-~dg~v~lw~~~~ 424 (1196)
+|....+. .+.....+.+++||||| +.|+++. .+++|.+|+++.
T Consensus 293 ----~g~~~~~~--------------~~~~g~~~~~~~~spdg--~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 293 ----NGTLTKVG--------------YQLTGIHPRNFIITPNG--KYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp ----TCCEEEEE--------------EEECSSCCCEEEECTTS--CEEEEEETTTTEEEEEEECT
T ss_pred ----CCcEEEee--------------EecCCCCCceEEECCCC--CEEEEEECCCCCEEEEEEEC
Confidence 12111111 11112356789999999 8888887 578999987763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-16 Score=174.28 Aligned_cols=262 Identities=9% Similarity=-0.002 Sum_probs=170.2
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCC---CEEEEEEccCCCEEEE-EECCCcEEEEECCCCe
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGD---SITAFDYLMEKEALIV-GTSSGLLLLHSVDGNA 108 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~v~~v~~spd~~~La~-as~dG~I~lw~~~~~~ 108 (1196)
+.+++++.++.|..||. .+++....+ +. +. .+..++|+|||+.|++ .+.++.|.+||..+++
T Consensus 2 ~~~v~~~~~~~v~~~d~--~~~~~~~~~----------~~--~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 67 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT--EKMAVDKVI----------TI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEETTTEEEEEET--TTTEEEEEE----------EC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC
T ss_pred cEEEEcCCCCeEEEEEC--CCCcEEEEE----------Ec--CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC
Confidence 35677788899999998 554431111 11 12 4788999999987754 4557899999998876
Q ss_pred EE-Eee--e---ecCcEEEEEECCCCCEEEEEe------------CCceEEEEecc-CceeeeeecccccCccccccCcc
Q 000992 109 TE-VVG--R---VEGGVRFISPSPDGDLLGVTT------------GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 109 ~e-~vg--~---~~~~I~~~awSPDg~~LA~~s------------~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
.. .+. . +...+.+++|||||+.|++++ .++.|.+|+.. ...+.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------- 133 (337)
T 1pby_B 68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------- 133 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------------
T ss_pred eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--------------
Confidence 43 222 1 122677899999999999986 57899988742 222222211
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC---
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE--- 246 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~--- 246 (1196)
...+..++|+|||++++ +++ +.|++||..+|++........ ....++|+|||+.++.++.....
T Consensus 134 ---~~~~~~~~~s~dg~~l~-~~~--------~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~ 200 (337)
T 1pby_B 134 ---PRQITMLAWARDGSKLY-GLG--------RDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMAT 200 (337)
T ss_dssp ---CSSCCCEEECTTSSCEE-EES--------SSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEE
T ss_pred ---CCCcceeEECCCCCEEE-EeC--------CeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceee
Confidence 12346789999999888 553 579999998898877665332 11345899999987665432110
Q ss_pred ---------------CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 247 ---------------NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 247 ---------------~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
.....|.+|+..........+. ++...+..++|||||+.|+++ ++ .|.+|+..+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~--~~---~v~~~d~~~~~~-- 272 (337)
T 1pby_B 201 PFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR-IMDVFYFSTAVNPAKTRAFGA--YN---VLESFDLEKNAS-- 272 (337)
T ss_dssp EEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE-ECSSCEEEEEECTTSSEEEEE--ES---EEEEEETTTTEE--
T ss_pred eeeccccccccccccccccceEEEeCCCCCceEeecC-CCCCceeeEEECCCCCEEEEe--CC---eEEEEECCCCcC--
Confidence 0001467788654332222222 223468899999999999988 45 799999987642
Q ss_pred EEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 312 KYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
.+.+.. ......+.|+|++.. |.+...++.+.
T Consensus 273 ~~~~~~-~~~~~~~~~s~dg~~-l~~~~~~~~i~ 304 (337)
T 1pby_B 273 IKRVPL-PHSYYSVNVSTDGST-VWLGGALGDLA 304 (337)
T ss_dssp EEEEEC-SSCCCEEEECTTSCE-EEEESBSSEEE
T ss_pred cceecC-CCceeeEEECCCCCE-EEEEcCCCcEE
Confidence 233332 123377899999874 55555455543
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-15 Score=172.39 Aligned_cols=274 Identities=10% Similarity=-0.004 Sum_probs=171.5
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-EeeeecC---cEEEEEECCCCCEEEEE-eCCceEEEEec-cCceeeeeecccccCc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVGRVEG---GVRFISPSPDGDLLGVT-TGFGQILVMTH-DWDLLYENPLEELAEG 161 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg~~~~---~I~~~awSPDg~~LA~~-s~d~tV~l~~~-~~d~~~~~~l~~~~~~ 161 (1196)
+.|++++.+|+|.+||..+++.. .+. +.. .+.+++|||||+.|+++ +.++.|.+|+. ....+.........
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc--
Confidence 46889999999999999987654 332 233 48899999999877555 45789999873 34433333321100
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeecccc----ccC--CCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN----SSK--LHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~----~~~--~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
.+...+..++|+|||++++ ++.... ... .++.|++||..+|+....... ...+..++|+|||+
T Consensus 79 ---------~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 79 ---------ERVKSLFGAALSPDGKTLA-IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGS 147 (337)
T ss_dssp ---------EEEECTTCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSS
T ss_pred ---------cccccccceEECCCCCEEE-EEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCC
Confidence 0011346799999999888 553100 000 258999999988888776654 34468899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc-----------------
Q 000992 236 NIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD----------------- 297 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~----------------- 297 (1196)
+|++++ ..|.+|+.. |..... ++.+. ....++|+|||+.|++.......-
T Consensus 148 ~l~~~~--------~~i~~~d~~~~~~~~~--~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 148 KLYGLG--------RDLHVMDPEAGTLVED--KPIQS--WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp CEEEES--------SSEEEEETTTTEEEEE--ECSTT--TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred EEEEeC--------CeEEEEECCCCcEeee--eeccc--cCCCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence 888873 259999965 433322 22211 011348999999887665433100
Q ss_pred ----eEEEEEecCCEEEEEEEEEEecC--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 298 ----SVKICFFSNNHWYLKYEIRYLRR--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 298 ----~V~lW~~~n~~wylkq~l~~~~~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
.|.+|+..+.... .+.+... ....+.|+|++.. +.+. ++.+. .|+.. .+..+
T Consensus 216 ~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~-l~~~--~~~v~----~~d~~----------~~~~~-- 273 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTR-AFGA--YNVLE----SFDLE----------KNASI-- 273 (337)
T ss_dssp GEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSE-EEEE--ESEEE----EEETT----------TTEEE--
T ss_pred ccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCE-EEEe--CCeEE----EEECC----------CCcCc--
Confidence 3678888775431 2222222 2366888888764 3333 33332 22221 11111
Q ss_pred eeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
..+.....+.+++|+||| +.|++++.++.|.+|+..+.
T Consensus 274 --------------~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 274 --------------KRVPLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp --------------EEEECSSCCCEEEECTTS--CEEEEESBSSEEEEEETTTC
T ss_pred --------------ceecCCCceeeEEECCCC--CEEEEEcCCCcEEEEECcCC
Confidence 112233456789999999 88888888999999999764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-16 Score=180.38 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=139.1
Q ss_pred EEEccCCCEEEEEEC-CCc--EEEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecc
Q 000992 81 FDYLMEKEALIVGTS-SGL--LLLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLE 156 (1196)
Q Consensus 81 v~~spd~~~La~as~-dG~--I~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~ 156 (1196)
.+|||||+.|++++. +|+ |.+||..+++...+. .+...+.+++|||||+.||+++.+++|.+|+...... ..+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~--~~~~ 118 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE--NVVY 118 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE--EEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc--eeee
Confidence 689999999999998 774 888899988776433 2333444678999999999999999998886432111 1111
Q ss_pred cccCccccccCccccCCCCeEEEEE--ccCCceEEEeeccccc----------------cCCCCEEEEEECCCCcEEEEe
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISW--RGDGKYFATLSEFCNS----------------SKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isW--spDG~~lAsvss~d~~----------------~~~d~~irVWd~~~G~l~~~~ 218 (1196)
.. +...+....| +|||++++ ....+.. ...+..|.+||..+|+.....
T Consensus 119 ~~-------------~~~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 119 QV-------------PAEWVGYGTWVANSDCTKLV-GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EC-------------CTTEEEEEEEEECTTSSEEE-EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred ec-------------hhhcccccceeECCCCCeec-cccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 11 1122333444 89999987 3211100 013478999999888776654
Q ss_pred ccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCC-CcEEEEEEccCCCeeEEEEccCCc
Q 000992 219 ELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQID-STVELLKWNCMSDLLAAVVRFEEY 296 (1196)
Q Consensus 219 e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~-~~V~~laWSpDg~~LAs~~~d~~~ 296 (1196)
. +...+..++||| ||+.||.++..........|.+++.+|.... .+..... ..+..++|||||+.||..+.....
T Consensus 185 ~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 185 Q-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR--KVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp E-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE--ESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred c-CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE--EeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 4 456678999999 9999998876421112347888887664332 2222221 357889999999999887765322
Q ss_pred c--eEEEEEecCCE
Q 000992 297 D--SVKICFFSNNH 308 (1196)
Q Consensus 297 ~--~V~lW~~~n~~ 308 (1196)
. .|.+|++.+..
T Consensus 262 ~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 262 PDRFIYSADPETLE 275 (388)
T ss_dssp CCEEEEEECTTTCC
T ss_pred CcceEEEEecCCCc
Confidence 2 49999988765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-14 Score=164.15 Aligned_cols=283 Identities=11% Similarity=0.059 Sum_probs=168.1
Q ss_pred CCEEEEEe----CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC----CcEEEEE
Q 000992 32 QNRLFFAS----SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----GLLLLHS 103 (1196)
Q Consensus 32 ~~~l~~~s----~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----G~I~lw~ 103 (1196)
.-.+|+++ .++.|+.|.+ ....++.... ... ....+..++|+|||+.|++++.+ |.|.+|+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~--d~~~g~~~~~------~~~---~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~ 81 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRF--NEETGESLPL------SDA---EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFA 81 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEE--ETTTCCEEEE------EEE---ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEE--eCCCCCEEEe------ecc---cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEE
Confidence 34566663 3557888877 3322222211 101 13467789999999999999986 8999998
Q ss_pred CCC--CeEEEeeee---cCcEEEEEECCCCCEEEEEe-CCceEEEEeccCc-eeeeeecc-cccCccccccCccccCCCC
Q 000992 104 VDG--NATEVVGRV---EGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWD-LLYENPLE-ELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 104 ~~~--~~~e~vg~~---~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d-~~~~~~l~-~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+. +.+..+... ......++| ||+.|++++ .+++|.+|...-+ .+...... ......+. ..+.+...
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~---~~~~~~~~ 156 (361)
T 3scy_A 82 FDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPD---KERQTMPH 156 (361)
T ss_dssp EETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSC---TTTCSSCC
T ss_pred EeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCC---ccccCCCc
Confidence 754 666544332 345677777 999888887 5789999864311 11111000 00000000 00011234
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCC--C----c-EE------EEeccCCCceeEEEEcCCCCeEEEEec
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS--G----T-LQ------ASSELKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~--G----~-l~------~~~e~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
+..++|+|||++++ ++.. ++..|++|+.+. | + +. ....+.......++|+|||++++++..
T Consensus 157 ~~~~~~spdg~~l~-~~~~-----~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 157 LHCVRITPDGKYLL-ADDL-----GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp EEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCCCEEE-EEeC-----CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 57899999999887 4442 467999997642 2 2 32 112223344589999999998888774
Q ss_pred CCCCCCCCeEEEEeCC-CeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec--CCEEEEEEEEEE
Q 000992 243 RKSENKCPSIVFYERN-GLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS--NNHWYLKYEIRY 317 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~n-Gl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~--n~~wylkq~l~~ 317 (1196)
. ...|.+|+.+ |.......+.. .+...+..++|||||+.|+++..+. .++|++|++. +..+.....+..
T Consensus 231 ~-----~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-~~~i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 231 I-----GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-ADGVAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp T-----TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-SCEEEEEEECTTTCCEEEEEEEEC
T ss_pred C-----CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-CCEEEEEEEcCCCCcEEEeeEecC
Confidence 3 3579999864 43221112221 1123578999999999998777650 1289999995 444433333332
Q ss_pred ecCCcEEEEEccCCCceEEEEe-cCCcE
Q 000992 318 LRRDGIRFMWHPTKPLQLICWT-LDGQI 344 (1196)
Q Consensus 318 ~~~~~~~v~Wsp~~~~~L~~~~-~~g~~ 344 (1196)
...+..+.|+|++.. |.+.. .++.+
T Consensus 305 -g~~~~~~~~spdg~~-l~~~~~~~~~v 330 (361)
T 3scy_A 305 -GIHPRNFIITPNGKY-LLVACRDTNVI 330 (361)
T ss_dssp -SSCCCEEEECTTSCE-EEEEETTTTEE
T ss_pred -CCCCceEEECCCCCE-EEEEECCCCCE
Confidence 223377999999875 55555 34444
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-14 Score=169.37 Aligned_cols=252 Identities=13% Similarity=0.021 Sum_probs=161.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccc-cccccceeeccccccccccCCCCCCEEEEEEccCCCE--EEEEE----
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSF-QNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEA--LIVGT---- 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~--La~as---- 94 (1196)
.+..+++++++..||+++.+ .|..|++ . .++.. .+. .++. .+.+..++|+|||+. ++++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~--~~~g~~~-~~~-------~~~~--~g~~~~~~~spdg~~l~~~~~~~~~~ 107 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAV--KSPTEIV-HEA-------SHPI--GGHPRANDADTNTRAIFLLAAKQPPY 107 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEE--EETTEEE-EEE-------EEEC--CSSGGGGCTTSCCEEEEEEECSSTTC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEE--CCCCCEE-Eee-------Eeec--CCCCccEEECCCCCEEEEEEecCCcc
Confidence 57789999999999999888 7999998 3 33221 111 1110 123456889999995 44442
Q ss_pred ---------CCCcEEEEECCC-CeEE-Eeee----ecCcEEEEEECCCCCEEEEEe-CCceEEEEecc--Cceeeeeecc
Q 000992 95 ---------SSGLLLLHSVDG-NATE-VVGR----VEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD--WDLLYENPLE 156 (1196)
Q Consensus 95 ---------~dG~I~lw~~~~-~~~e-~vg~----~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~--~d~~~~~~l~ 156 (1196)
.+|++.+|+.+. +++. .+.. +...+.+++|||||++|+++. ++++|.+|+.. ........+.
T Consensus 108 ~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~ 187 (365)
T 1jof_A 108 AVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVD 187 (365)
T ss_dssp CEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEE
T ss_pred eeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEe
Confidence 689999999863 4432 3321 245799999999999988775 46789888643 2211000110
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEEE---Eec--c-----CCC-
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQA---SSE--L-----KAF- 223 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~~---~~e--~-----~~~- 223 (1196)
+..+......++|+|||++++ ++.. .+++|++|+.+ +|++.. ... + +.+
T Consensus 188 ------------~~~~g~~p~~~~~spdg~~l~-v~~~-----~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 249 (365)
T 1jof_A 188 ------------APDPGDHPRWVAMHPTGNYLY-ALME-----AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPE 249 (365)
T ss_dssp ------------CSSTTCCEEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTT
T ss_pred ------------cCCCCCCCCEeEECCCCCEEE-EEEC-----CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccc
Confidence 001124568899999999988 5542 35799999753 677632 111 1 111
Q ss_pred -----ceeEEE-EcCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEE-eccCCCCcEEEEEEcc---CCCeeEEEE
Q 000992 224 -----MGAVLE-WMPSGANIAAVYDRKSENKCPSIVFYER--NGLERSSFD-INEQIDSTVELLKWNC---MSDLLAAVV 291 (1196)
Q Consensus 224 -----~v~sla-wsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~-l~~~~~~~V~~laWSp---Dg~~LAs~~ 291 (1196)
....++ |+|||++|+++.+..+......|.+|+. +|....... +..+ ...+..++||| ||++|+++.
T Consensus 250 ~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 250 TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEEC
T ss_pred cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEE
Confidence 468899 9999999887765421001127999985 454432111 2211 22456899999 899999998
Q ss_pred ccCCcceEEEEEecCC
Q 000992 292 RFEEYDSVKICFFSNN 307 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~ 307 (1196)
.+. ++|++|++...
T Consensus 329 ~~~--~~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQE--GWLEIYRWKDE 342 (365)
T ss_dssp SSS--CEEEEEEEETT
T ss_pred cCC--CeEEEEEEchh
Confidence 752 28999998764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=167.67 Aligned_cols=284 Identities=12% Similarity=0.029 Sum_probs=165.7
Q ss_pred EeeecCCCEEEEEeC-CC--cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 26 SALDIEQNRLFFASS-AN--NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~-~~--~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
.+|.+|+..|++++. ++ +|+.|++ .+++.. .+ ... +...+.++.|||||+.|++++.+++|.+|
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~--~~g~~~-~l-------t~~---~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDL--NTQVAT-QL-------TEG---RGDNTFGGFLSPDDDALFYVKDGRNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEET--TTCEEE-EC-------CCS---SCBCSSSCEECTTSSEEEEEETTTEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeC--CCCceE-Ee-------eeC---CCCCccceEEcCCCCEEEEEeCCCeEEEE
Confidence 679999999999987 45 4899998 444431 11 111 11233356899999999999999999999
Q ss_pred ECCCCeEE-EeeeecCcEEEEEE--CCCCCEEEEEe----------------------CCceEEEEeccCceeeeeeccc
Q 000992 103 SVDGNATE-VVGRVEGGVRFISP--SPDGDLLGVTT----------------------GFGQILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 103 ~~~~~~~e-~vg~~~~~I~~~aw--SPDg~~LA~~s----------------------~d~tV~l~~~~~d~~~~~~l~~ 157 (1196)
|+.+++.. +...+.+.+....| ||||+.|+... .+..|.+|+....... .+.
T Consensus 108 d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~--~l~- 184 (388)
T 3pe7_A 108 DLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST--VIL- 184 (388)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE--EEE-
T ss_pred ECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE--Eee-
Confidence 99998765 33333344544444 99999998543 2244555442211111 111
Q ss_pred ccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCC
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGA 235 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~ 235 (1196)
.+...+..++||| ||+.||+++. .+.......|.+||..+++......... ..+..++|||||+
T Consensus 185 -------------~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 185 -------------QENQWLGHPIYRPYDDSTVAFCHE-GPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp -------------EESSCEEEEEEETTEEEEEEEEEC-SCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred -------------cCCccccccEECCCCCCEEEEEEe-cCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence 1224568899999 9999984332 2110114578888985555444333332 2467889999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEE-EeccCCC--CcEEEEEEccCCCeeEEEEcc------CCcceEEEEEecC
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSF-DINEQID--STVELLKWNCMSDLLAAVVRF------EEYDSVKICFFSN 306 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f-~l~~~~~--~~V~~laWSpDg~~LAs~~~d------~~~~~V~lW~~~n 306 (1196)
.||..+.... .....|.+|+..+.....+ .++.... .....++|||||+.||....+ .....|.+|+..+
T Consensus 251 ~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 251 ALVYVSYLKG-SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CEEEEEEETT-CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEEecCCC-CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 9988765422 0112488999754332221 1221000 001124799999999976543 1223799999987
Q ss_pred CEEEEEEEEEEecC-----------CcEEEEEccCCCceEEEEe-cCCcE
Q 000992 307 NHWYLKYEIRYLRR-----------DGIRFMWHPTKPLQLICWT-LDGQI 344 (1196)
Q Consensus 307 ~~wylkq~l~~~~~-----------~~~~v~Wsp~~~~~L~~~~-~~g~~ 344 (1196)
... ..+..+.. ....+.|+|++.. |.+.+ .+|..
T Consensus 330 ~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~-l~~~s~~~g~~ 375 (388)
T 3pe7_A 330 GTQ---HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQ-ILFTSDVHGKP 375 (388)
T ss_dssp TEE---EEEEECCCCCCCBTTBSSTTCCCCEECTTSSE-EEEEECTTSSC
T ss_pred Cce---EEeccccCcccccccccccCCCCccCCCCCCE-EEEEecCCCce
Confidence 642 23333322 1356789999875 44333 34443
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=164.85 Aligned_cols=233 Identities=12% Similarity=-0.010 Sum_probs=155.9
Q ss_pred EEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcEEEEE
Q 000992 25 FSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLLLLHS 103 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I~lw~ 103 (1196)
+.++..++..+++++.++.|+.||. .+++....+ + ......+..++|+|||+.++++ ..+|+|.+||
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~--~~~~~~~~~---~-------~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d 71 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDV--ASDTVYKSC---V-------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 71 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEET--TTTEEEEEE---E-------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEEC--CCCcEEEEE---e-------cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEe
Confidence 3456666666677788999999998 554431111 1 1001247789999999976554 4689999999
Q ss_pred CCCCeEE-Eee-ee-----cCcEEEEEECCCCCEEEEEeCC------------ceEEEEecc-CceeeeeecccccCccc
Q 000992 104 VDGNATE-VVG-RV-----EGGVRFISPSPDGDLLGVTTGF------------GQILVMTHD-WDLLYENPLEELAEGFD 163 (1196)
Q Consensus 104 ~~~~~~e-~vg-~~-----~~~I~~~awSPDg~~LA~~s~d------------~tV~l~~~~-~d~~~~~~l~~~~~~~~ 163 (1196)
..+++.. .+. .+ ...+.+++|||||++|++++.+ ++|.+|+.. ..........
T Consensus 72 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------- 144 (349)
T 1jmx_B 72 LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF------- 144 (349)
T ss_dssp TTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-------
T ss_pred CCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-------
Confidence 9987653 222 11 1237889999999999999865 789888632 1111111000
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---------------------
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--------------------- 222 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--------------------- 222 (1196)
.+...+.+++|+|||+.++ ++ +.|++||..+|+.........
T Consensus 145 -------~~~~~~~~~~~s~dg~l~~--~~--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (349)
T 1jmx_B 145 -------PMPRQVYLMRAADDGSLYV--AG--------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 207 (349)
T ss_dssp -------ECCSSCCCEEECTTSCEEE--ES--------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred -------cCCCcccceeECCCCcEEE--cc--------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcc
Confidence 1122467899999999444 32 239999998888776653221
Q ss_pred -----------------------------------------------CceeEEEEcC-CCCeEEEEecCCCCCCCCeEEE
Q 000992 223 -----------------------------------------------FMGAVLEWMP-SGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 223 -----------------------------------------------~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
....+++|+| ||++++++ . ..|.+
T Consensus 208 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~-------~~v~~ 279 (349)
T 1jmx_B 208 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L-------NRLAK 279 (349)
T ss_dssp CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E-------SEEEE
T ss_pred eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-c-------CeEEE
Confidence 1235678889 99999988 2 36999
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
|+.. |.....+ .. ...+..++|||||+.|++++.++ .|++|+..+..
T Consensus 280 ~d~~~~~~~~~~--~~--~~~~~~~~~s~dg~~l~~~~~~~---~v~v~d~~~~~ 327 (349)
T 1jmx_B 280 YDLKQRKLIKAA--NL--DHTYYCVAFDKKGDKLYLGGTFN---DLAVFNPDTLE 327 (349)
T ss_dssp EETTTTEEEEEE--EC--SSCCCEEEECSSSSCEEEESBSS---EEEEEETTTTE
T ss_pred EECccCeEEEEE--cC--CCCccceEECCCCCEEEEecCCC---eEEEEeccccc
Confidence 9965 3333322 21 23477999999999999977676 89999998764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=179.43 Aligned_cols=235 Identities=12% Similarity=0.012 Sum_probs=157.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---CC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~---dG 97 (1196)
.+..+++.+|+..|++++. ++.+..|++ ..++.. + +..+. ...+.+++|||| +.+++++. ++
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~--~~g~~~-~-------lt~~~---~~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLY--DGGETV-K-------LNREP---INSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEE--ETTEEE-E-------CCSSC---CSEECEECTTCS-EEEEEEECSTTSC
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEE--cCCCcE-e-------eeccc---ccccccccCCCC-eEEEEeccCCCCc
Confidence 6888999999999999987 888888987 444321 1 22221 246899999999 77777765 34
Q ss_pred cEEE--EEC--CCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 LLLL--HSV--DGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 ~I~l--w~~--~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
...| ++. .++... +.. ..++...+|||||+.++.++ .++.+.+|+....... .+...
T Consensus 89 ~~~l~~~~~~~~g~~~~-l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~--~l~~~-------------- 150 (582)
T 3o4h_A 89 QHALFKVNTSRPGEEQR-LEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR--ELARL-------------- 150 (582)
T ss_dssp CEEEEEEETTSTTCCEE-CTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE--EEEEE--------------
T ss_pred ceEEEEEeccCCCcccc-ccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE--EeecC--------------
Confidence 4555 555 444433 322 23455779999997654443 3445557753211111 11111
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
.. .+++|||||+++|+ ++.+.. ..+.|++||..+|++. .+..+.+.+.+++|||||+.||++..+. ...|
T Consensus 151 ~~--~~~~~spDG~~la~-~~~~~~--~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~----~~~i 220 (582)
T 3o4h_A 151 PG--FGFVSDIRGDLIAG-LGFFGG--GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAR----EARL 220 (582)
T ss_dssp SS--CEEEEEEETTEEEE-EEEEET--TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSS----CEEE
T ss_pred CC--ceEEECCCCCEEEE-EEEcCC--CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCC----eeEE
Confidence 11 78999999999994 443321 2367999998788776 4556778889999999999999666542 2479
Q ss_pred EEEeCCCeeEEEEEeccCCCCcEEEEE--------EccCCCeeEEEEccCCcceEEEEEe
Q 000992 253 VFYERNGLERSSFDINEQIDSTVELLK--------WNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~~~~~~V~~la--------WSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.+|+.++.... .+.. +...+.+++ |||||.++++++.++ +++||.+
T Consensus 221 ~~~d~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---~~~l~~~ 274 (582)
T 3o4h_A 221 VTVDPRDGSVE--DLEL-PSKDFSSYRPTAITWLGYLPDGRLAVVARREG---RSAVFID 274 (582)
T ss_dssp EEECTTTCCEE--ECCC-SCSHHHHHCCSEEEEEEECTTSCEEEEEEETT---EEEEEET
T ss_pred EEEcCCCCcEE--EccC-CCcChhhhhhccccceeEcCCCcEEEEEEcCC---cEEEEEE
Confidence 99997654332 2332 233455566 999999999999998 9999999
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-15 Score=170.01 Aligned_cols=240 Identities=11% Similarity=0.023 Sum_probs=146.2
Q ss_pred EEEEEEccCCCEEEEEECC-C--cEEEEECCCCeEEEeeeecCcEE-EEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 78 ITAFDYLMEKEALIVGTSS-G--LLLLHSVDGNATEVVGRVEGGVR-FISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~d-G--~I~lw~~~~~~~e~vg~~~~~I~-~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
+.+++|||||+.|+.+... | .|.+|+..+++...+......+. .++|||||+.||+++.+++|.+|+.......
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-- 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ-- 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE--
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE--
Confidence 5667899999999887654 3 68888999887654433233333 4789999999999999999988864322111
Q ss_pred eccccc-----CccccccCccccCCCCe-----EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 154 PLEELA-----EGFDVHEPELSSSFSFK-----SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 154 ~l~~~~-----~~~~Vs~tqf~~~~~~v-----~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
.+.... .++.+- |.. .... ..+.|+|||++++ +...... ..+..|.+||..+|+...... +..
T Consensus 116 ~~~~~~~~~~~~g~~l~---~~~-~~~~~~~~~~~~~~spdg~~~~-~~~~~~~-~~~~~l~~~d~~~g~~~~~~~-~~~ 188 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVA---NSD-CTKLVGIEILKRDWQPLTSWEK-FAEFYHT-NPTCRLIKVDIETGELEVIHQ-DTA 188 (396)
T ss_dssp EEEECCTTEEEEEEEEE---CTT-SSEEEEEEEEGGGCCCCCSHHH-HHHHHHT-CCCEEEEEEETTTCCEEEEEE-ESS
T ss_pred EEEecccccCCCCCEEE---ecc-CCccccccccccccCCCCccee-eeeeccC-CCcceEEEEECCCCcEEeecc-CCc
Confidence 111100 000000 000 0000 0145788888776 4321000 135789999998888766553 456
Q ss_pred ceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcc--eE
Q 000992 224 MGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYD--SV 299 (1196)
Q Consensus 224 ~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~--~V 299 (1196)
.+..++|+| +|+.||.++.+........|.+|+.+|.... .+..+. ...+..++|||||+.|+.++.+.... .|
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~--~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR--KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI 266 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE--ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee--EeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence 678999999 8998888775321111146888887654322 122211 23588899999999998887663322 49
Q ss_pred EEEEecCCEEEEEEEEEEecCCcEEEEEcc-CCCc
Q 000992 300 KICFFSNNHWYLKYEIRYLRRDGIRFMWHP-TKPL 333 (1196)
Q Consensus 300 ~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp-~~~~ 333 (1196)
.+|+..+.... .+.. .......|+| ++..
T Consensus 267 ~~~d~~~g~~~---~l~~--~~~~~~~~s~~dg~~ 296 (396)
T 3c5m_A 267 YKANPETLENE---EVMV--MPPCSHLMSNFDGSL 296 (396)
T ss_dssp EEECTTTCCEE---EEEE--CCSEEEEEECSSSSE
T ss_pred EEEECCCCCeE---Eeee--CCCCCCCccCCCCce
Confidence 99998765431 1211 1122278999 8763
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-14 Score=160.03 Aligned_cols=286 Identities=12% Similarity=-0.013 Sum_probs=157.3
Q ss_pred EEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecC--cEEEEEECCCCCEEEEE-eCCceEEEEec-cCceeeeee
Q 000992 80 AFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEG--GVRFISPSPDGDLLGVT-TGFGQILVMTH-DWDLLYENP 154 (1196)
Q Consensus 80 ~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~--~I~~~awSPDg~~LA~~-s~d~tV~l~~~-~~d~~~~~~ 154 (1196)
+++++++++.+++++.+|+|.+||..++++. .+.. .. .+..++|||||+.++++ +.+++|.+|+. ....+....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 4567889999999999999999999987653 3322 23 57899999999976555 46889998873 233333332
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECCCCcEE---EEeccCCCce
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQ---ASSELKAFMG 225 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~~G~l~---~~~e~~~~~v 225 (1196)
...... .....+..++|+|||++++ +++.+.. ...++.|.+||..+|+.. .... +...+
T Consensus 83 ~~~~~~----------~~~~~~~~~~~spdg~~l~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~ 150 (349)
T 1jmx_B 83 LSSVPG----------EVGRSMYSFAISPDGKEVY-ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQV 150 (349)
T ss_dssp SCCSTT----------EEEECSSCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSC
T ss_pred cccccc----------cccccccceEECCCCCEEE-EEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcc
Confidence 211000 0001246899999999998 5542100 001379999998775432 2333 23346
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCC---------------------CcEEEEEEccC
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQID---------------------STVELLKWNCM 283 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~---------------------~~V~~laWSpD 283 (1196)
.+++|+|||+ +.+++. .|.+|+.. |.....+....... .....++|++|
T Consensus 151 ~~~~~s~dg~-l~~~~~--------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 151 YLMRAADDGS-LYVAGP--------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp CCEEECTTSC-EEEESS--------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred cceeECCCCc-EEEccC--------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 8899999999 444432 38899864 44333222111000 03456778877
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc-CCCceEEEEecCCcEEEEEEEEeeecCCCeeEE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP-TKPLQLICWTLDGQITTYNFIWTTAVMENSTAL 362 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp-~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~ 362 (1196)
+.......... ..+..++..+..... ..+.........+.|+| ++.. +.+. ++.+. .|+..
T Consensus 222 ~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp~dg~~-l~~~--~~~v~----~~d~~-------- 283 (349)
T 1jmx_B 222 DKQDPATADLL--YGYLSVDLKTGKTHT-QEFADLTELYFTGLRSPKDPNQ-IYGV--LNRLA----KYDLK-------- 283 (349)
T ss_dssp -----CCCEEE--EEEEEEETTTCCEEE-EEEEECSSCEEEEEECSSCTTE-EEEE--ESEEE----EEETT--------
T ss_pred CcCCccccccc--eeEEEEeccCCcEEe-cccccCCCcceeeEecCCCCCE-EEEE--cCeEE----EEECc--------
Confidence 64321110000 011123332221100 01111111226678888 7654 4333 33332 22221
Q ss_pred EEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC
Q 000992 363 VIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP 425 (1196)
Q Consensus 363 viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~ 425 (1196)
.++.+ ..+.....+.+++|+||| +.|++++.+++|.+|+..+.
T Consensus 284 --~~~~~----------------~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 284 --QRKLI----------------KAANLDHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp --TTEEE----------------EEEECSSCCCEEEECSSS--SCEEEESBSSEEEEEETTTT
T ss_pred --cCeEE----------------EEEcCCCCccceEECCCC--CEEEEecCCCeEEEEecccc
Confidence 11111 122233456789999999 78888888999999999764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=172.17 Aligned_cols=208 Identities=10% Similarity=0.045 Sum_probs=142.4
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccc-----cccceeeccccccccccCCCCCCEEEEEEccCCCEEE----E
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQN-----ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI----V 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La----~ 92 (1196)
.+..+++.+++..+++++.++ +..|+...... .....+..... ...++. .+.|.+++|+|||+.|+ +
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPM--KFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECC--SSCEEEEEECTTSCEEEEEEEE
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccC--CCcccEEEEcCCCCEEEEEEec
Confidence 678899999999999998887 77776521000 00000000000 000111 35799999999999999 6
Q ss_pred EECCCcEEEEECCCC------------eEEEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEecc-Cceeeeeecccc
Q 000992 93 GTSSGLLLLHSVDGN------------ATEVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTHD-WDLLYENPLEEL 158 (1196)
Q Consensus 93 as~dG~I~lw~~~~~------------~~e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~ 158 (1196)
++.||+|++||..++ .+.....|.+.|.+++|||+ +++||+++.||+|++|+.. ...+...
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~----- 188 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT----- 188 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE-----
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec-----
Confidence 788999999998643 13344446889999999998 8999999999999998632 2111111
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-------CCceeEEEEc
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-------AFMGAVLEWM 231 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-------~~~v~slaws 231 (1196)
.+|...+.+++|+|||++|| +++ .|++|+|||. .|+...+...+ ...+.+++|+
T Consensus 189 -----------~~~~~~v~~v~wspdg~~la-sgs------~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 189 -----------LPSTVAVTSVCWSPKGKQLA-VGK------QNGTVVQYLP-TLQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp -----------ECGGGCEEEEEECTTSSCEE-EEE------TTSCEEEECT-TCCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred -----------cCCCCceeEEEEcCCCCEEE-EEc------CCCcEEEEcc-CCcccccccCCcccCCCCceeEEEEEEe
Confidence 13445789999999999999 676 4689999999 47766655433 2368999999
Q ss_pred CCCCeEEEEecCCC-CCCCCeEEEEeC
Q 000992 232 PSGANIAAVYDRKS-ENKCPSIVFYER 257 (1196)
Q Consensus 232 PdG~~IAs~s~d~~-~~~~~~V~~~e~ 257 (1196)
|++.++++.+...+ -+....+.+|+.
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred cCceEEEEEccCCCccCCCCceEEEEe
Confidence 99998876553211 112345888874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-12 Score=144.86 Aligned_cols=244 Identities=9% Similarity=0.025 Sum_probs=168.0
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ccCCCEEEEEEC-CCc
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LMEKEALIVGTS-SGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-spd~~~La~as~-dG~ 98 (1196)
.+.++++|+++. +|++ +.++.|..|+. ..+.. ..+ +.. +........+.++++ .++++.+++... ++.
T Consensus 31 ~p~~v~~~~~g~-l~v~~~~~~~i~~~d~--~g~~~-~~~---~~~--~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 31 EPSGVAVNAQND-IIVADTNNHRIQIFDK--EGRFK-FQF---GEC--GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CEEEEEECTTCC-EEEEEGGGTEEEEECT--TSCEE-EEE---CCB--SSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CCceEEECCCCC-EEEEECCCCEEEEECC--CCcEE-EEe---ccc--CCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 678899999987 5555 66778999998 32211 111 100 000000146899999 477776666543 889
Q ss_pred EEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|.+|+.++..+...+. ....+.+++++|||+++++.+.++.|.+|+.+...+...... ++.....
T Consensus 102 i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~--------------~~~~~p~ 167 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS--------------KHLEFPN 167 (286)
T ss_dssp EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT--------------TTCSSEE
T ss_pred EEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCC--------------CccCCcE
Confidence 9999977665554432 235689999999999888878888999987655444332211 1113458
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC--CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~--~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.|+++|||++++ +.+ .++.|++||. +|+...+.... ......|+++|+|+++++...+. ..|.+|
T Consensus 168 ~i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~-----~~i~~~ 234 (286)
T 1q7f_A 168 GVVVNDKQEIFI-SDN------RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN-----FNLTIF 234 (286)
T ss_dssp EEEECSSSEEEE-EEG------GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS-----CEEEEE
T ss_pred EEEECCCCCEEE-EEC------CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC-----EEEEEE
Confidence 999999999877 443 3579999999 88877766432 24568999999999888876531 279999
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+.+|.....+..... ...+.+++|+|||+++++ +.++ +|++|+...
T Consensus 235 ~~~g~~~~~~~~~~~-~~~~~~i~~~~~g~l~vs-~~~~---~v~v~~~~~ 280 (286)
T 1q7f_A 235 TQDGQLISALESKVK-HAQCFDVALMDDGSVVLA-SKDY---RLYIYRYVQ 280 (286)
T ss_dssp CTTSCEEEEEEESSC-CSCEEEEEEETTTEEEEE-ETTT---EEEEEECSC
T ss_pred CCCCCEEEEEcccCC-CCcceeEEECCCCcEEEE-CCCC---eEEEEEccc
Confidence 999876655543321 235789999999997777 5666 899998754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-12 Score=144.46 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=152.5
Q ss_pred ceeEEeeecCCCEEEEEeC---------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE
Q 000992 22 ILQFSALDIEQNRLFFASS---------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~ 92 (1196)
.+...++ |+..|+++.. ++.|+.|++ ..++. . . + ..+.++.|||||+.|+.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~--~~~~~--~--~----l--------~~~~~~~~SpDg~~la~ 75 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENL--KNNAR--R--F----I--------ENATMPRISPDGKKIAF 75 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEET--TTCCE--E--E----E--------ESCEEEEECTTSSEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeC--CCCce--E--E----c--------ccCCCeEECCCCCEEEE
Confidence 4566677 7888877631 446888888 44332 1 1 1 25788999999999998
Q ss_pred EECC---C--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---------------------------ceE
Q 000992 93 GTSS---G--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---------------------------GQI 140 (1196)
Q Consensus 93 as~d---G--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---------------------------~tV 140 (1196)
++.+ | .|.+|+..+++...+..+.. +.+++|||||+.||+++.+ ..|
T Consensus 76 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (347)
T 2gop_A 76 MRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTF 154 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEE
T ss_pred EEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceE
Confidence 8764 3 37788998887654433344 9999999999999998743 345
Q ss_pred EEEeccCcee-eeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccC--C-CCEEEEEECCCCcEEE
Q 000992 141 LVMTHDWDLL-YENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSK--L-HKRLKVWERDSGTLQA 216 (1196)
Q Consensus 141 ~l~~~~~d~~-~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~--~-d~~irVWd~~~G~l~~ 216 (1196)
.+|+...... .... . . .+..++|+||| +++ ++..++... . ...|.++| +|+...
T Consensus 155 ~~~d~~~~~~~~~l~----------------~-~-~~~~~~~spdg-~~~-~~~~~~~~~~~~~~~~l~~~d--~~~~~~ 212 (347)
T 2gop_A 155 WIFDTESEEVIEEFE----------------K-P-RFSSGIWHRDK-IVV-NVPHREIIPQYFKFWDIYIWE--DGKEEK 212 (347)
T ss_dssp EEEETTTTEEEEEEE----------------E-E-TTCEEEEETTE-EEE-EEECCCSSCCSSCCEEEEEEE--TTEEEE
T ss_pred EEEECCCCeEEeeec----------------C-C-CcccccCCCCe-EEE-EEecccccccccccccEEEeC--CCceEE
Confidence 5554221111 1111 1 1 34789999999 655 454321100 0 23455555 676655
Q ss_pred EeccCCCceeEEEEcCCCCeEEEEecCCC--CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEE-EEEccCCCeeEEEEcc
Q 000992 217 SSELKAFMGAVLEWMPSGANIAAVYDRKS--ENKCPSIVFYERNGLERSSFDINEQIDSTVEL-LKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~~IAs~s~d~~--~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~-laWSpDg~~LAs~~~d 293 (1196)
...+ +.+. ++||||+.||.++.+.. ......|.+|+ +|... .+...+...+.. ++|| || ++++++.+
T Consensus 213 l~~~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~---~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 213 MFEK--VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVM---GILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp EEEE--ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEE---ESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred eccC--ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CCceE---eccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 4443 3333 45999999998875431 01135788888 55432 232223456876 9999 99 99999988
Q ss_pred CCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEcc
Q 000992 294 EEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHP 329 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp 329 (1196)
+ .++|| +.+... ..+. ..... ..+.|+|
T Consensus 283 ~---~~~l~-~~~g~~---~~~~-~~~~~v~~~~~s~ 311 (347)
T 2gop_A 283 G---SVNLY-IWDGEI---KPIA-KGRHWIMGFDVDE 311 (347)
T ss_dssp T---EEEEE-EESSSE---EEEE-CSSSEEEEEEESS
T ss_pred C---cEEEE-EcCCce---EEEe-cCCCeEEeeeeeC
Confidence 8 89999 875432 1221 11222 6788998
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=158.11 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=161.5
Q ss_pred eeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEE-EEEEccCCCEEEEEECCCc
Q 000992 23 LQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT-AFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~-~v~~spd~~~La~as~dG~ 98 (1196)
+...+|.+|+..|++++.. ..|+.|++ ..++.. . +... ...+. .+.|||||+.|+.++.+++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~--~~~~~~-~-------l~~~----~~~~~~~~~~spdg~~l~~~~~~~~ 103 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNL--ETQQAV-Q-------LTEG----KGDNTFGGFISTDERAFFYVKNELN 103 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEET--TTTEEE-E-------CCCS----SCBCTTTCEECTTSSEEEEEETTTE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEEC--CCCcEE-E-------eecC----CCCccccceECCCCCEEEEEEcCCc
Confidence 5567899999998887553 36888888 444321 1 1111 11222 3679999999999999999
Q ss_pred EEEEECCCCeEEEeee-ecCcEEE-------------------EEECCCCCEEEEEe-----CCceEEEEeccCceeeee
Q 000992 99 LLLHSVDGNATEVVGR-VEGGVRF-------------------ISPSPDGDLLGVTT-----GFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~-~~~~I~~-------------------~awSPDg~~LA~~s-----~d~tV~l~~~~~d~~~~~ 153 (1196)
|.+|+..+++...+.. +.+.... ++|||||+.++++. .+..|.+|+..-......
T Consensus 104 l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 104 LMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred EEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 9999999876653332 2222222 35677777666542 444565554221111111
Q ss_pred ecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEc
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWM 231 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slaws 231 (1196)
. .+...+..+.|+| ||+.|++++. ++.......|.+|+..+++........ ...+..++|+
T Consensus 184 ~----------------~~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (396)
T 3c5m_A 184 H----------------QDTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI 246 (396)
T ss_dssp E----------------EESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC
T ss_pred c----------------cCCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC
Confidence 0 1224568899999 8998884332 110001157899998555544443322 2246789999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEcc-CCCeeEEEEccC-------------Ccc
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNC-MSDLLAAVVRFE-------------EYD 297 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSp-Dg~~LAs~~~d~-------------~~~ 297 (1196)
|||+.||.++.+.. .....|.+|+..+....... ..+ ... ++||| ||++|+++..+. ...
T Consensus 247 pdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~-~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~ 320 (396)
T 3c5m_A 247 PDGSAMAYVSYFKG-QTDRVIYKANPETLENEEVM-VMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP 320 (396)
T ss_dssp TTSSCEEEEEEETT-TCCEEEEEECTTTCCEEEEE-ECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred CCCCEEEEEecCCC-CccceEEEEECCCCCeEEee-eCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence 99999888765422 01133999996533222111 111 133 89999 999998865321 113
Q ss_pred eEEEEEecCCEEEEEEEEEEecCC-----------cEEEEEccCCCceEEEEe
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRD-----------GIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~-----------~~~v~Wsp~~~~~L~~~~ 339 (1196)
.|.+|+..+... ..+..+... .....|+|++.. |...+
T Consensus 321 ~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~s 369 (396)
T 3c5m_A 321 FLYVLNTKAKSA---QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDG-VLFTS 369 (396)
T ss_dssp EEEEEETTTTBC---CEEEECCCCCCCBTTBSSTTCCCCEECTTSSE-EEEEE
T ss_pred cEEEEecccCce---EEccCCCCccccccccccCCCCCceEccCCCe-EEEEe
Confidence 799999876543 123322211 244689998865 44433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-12 Score=147.05 Aligned_cols=270 Identities=12% Similarity=0.072 Sum_probs=158.4
Q ss_pred CCEEEEEEccCCCEEEEEE---------CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---ce--EE
Q 000992 76 DSITAFDYLMEKEALIVGT---------SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---GQ--IL 141 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as---------~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~t--V~ 141 (1196)
..+.+.++ ||+.|+... .+++|.+|+..+++...+ ..+.+++|||||+.||+++.+ +. |.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 45778888 999998763 267799999998876544 457899999999999998754 34 44
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc-c--------------------cCC
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN-S--------------------SKL 200 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~-~--------------------~~~ 200 (1196)
+|+..... ...+... .. +..++|+|||++|+ .++.+. . ...
T Consensus 89 ~~~~~~g~--~~~l~~~--------------~~-~~~~~wspdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 89 VADLETLS--SKKILEA--------------KN-IRSLEWNEDSRKLL-IVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEETTTTE--EEEEEEE--------------SE-EEEEEECTTSSEEE-EEEECCCC---------CCCC---------C
T ss_pred EEECCCCc--eEEEEcC--------------CC-ccceeECCCCCEEE-EEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 44322111 1111111 12 68899999999999 443210 0 001
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC--C-CCeEEEEeCCCeeEEEEEeccCCCCcEEE
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN--K-CPSIVFYERNGLERSSFDINEQIDSTVEL 277 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~--~-~~~V~~~e~nGl~~~~f~l~~~~~~~V~~ 277 (1196)
...|.+||..+|+....... . .+..++|+||| +++++..+.... . ...|..++ +|.... +.. + ..+..
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~---l~~-~-~~~~~ 221 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEK---MFE-K-VSFYA 221 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEE---EEE-E-ESEEE
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEE---ecc-C-cceee
Confidence 35799999978877333333 3 67899999999 777765532100 0 23555566 554322 221 1 33444
Q ss_pred EEEccCCCeeEEEEccCC-----cceEEEEEecCCEEEEEEEEEEecCCc-EE-EEEccCCCceEEEEecCCcEEEEEEE
Q 000992 278 LKWNCMSDLLAAVVRFEE-----YDSVKICFFSNNHWYLKYEIRYLRRDG-IR-FMWHPTKPLQLICWTLDGQITTYNFI 350 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~-----~~~V~lW~~~n~~wylkq~l~~~~~~~-~~-v~Wsp~~~~~L~~~~~~g~~~~~~~~ 350 (1196)
+||||+.||.++.+.. ...|.+|+ +..+ + .+....... .. +.|+ ++ .+.+.+.+|... .
T Consensus 222 --~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~-~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~----l 287 (347)
T 2gop_A 222 --VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV--M-GILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVN----L 287 (347)
T ss_dssp --EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE--E-ESSTTCCSEEEEEEEET-TE--EEEEEEETTEEE----E
T ss_pred --ECCCCCEEEEEEccccCCccccceEEEEC--CCce--E-eccccCCcccCCccEEc-Cc--EEEEEecCCcEE----E
Confidence 4999999999886541 12577777 3221 1 111000112 33 6787 65 344545445332 2
Q ss_pred EeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcE-EEEeCC
Q 000992 351 WTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCL-CVVDLP 423 (1196)
Q Consensus 351 ~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v-~lw~~~ 423 (1196)
| +. +|....+ +.+...|.+++|+| . .+++++.+++. .||.++
T Consensus 288 ~-~~----------~g~~~~~----------------~~~~~~v~~~~~s~-~---~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IW----------DGEIKPI----------------AKGRHWIMGFDVDE-I---VVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EE----------SSSEEEE----------------ECSSSEEEEEEESS-S---EEEEEECSSSCCEEEEES
T ss_pred E-Ec----------CCceEEE----------------ecCCCeEEeeeeeC-c---EEEEEcCCCChHHheEeC
Confidence 2 21 1221111 12345688999999 6 77777777765 788765
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-12 Score=161.82 Aligned_cols=200 Identities=10% Similarity=-0.006 Sum_probs=130.4
Q ss_pred EEEEc--cCCCE-EEEEEC-CCcEEEEECC--C-CeEEEeee-----ecCcEEEEEECCCCCEEEEEeCC----------
Q 000992 80 AFDYL--MEKEA-LIVGTS-SGLLLLHSVD--G-NATEVVGR-----VEGGVRFISPSPDGDLLGVTTGF---------- 137 (1196)
Q Consensus 80 ~v~~s--pd~~~-La~as~-dG~I~lw~~~--~-~~~e~vg~-----~~~~I~~~awSPDg~~LA~~s~d---------- 137 (1196)
++.|+ |||+. |+.++. +++|.+|+.+ + +....+.. +...+.+++|||||+.||+++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 45555 99999 887654 5667777877 4 55443333 34568899999999999999876
Q ss_pred ceEEEEeccC------ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc-c-CCCCEEEEEEC
Q 000992 138 GQILVMTHDW------DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-S-KLHKRLKVWER 209 (1196)
Q Consensus 138 ~tV~l~~~~~------d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-~-~~d~~irVWd~ 209 (1196)
.+|.+|+... .... .+.. .+...+..++|||||++|| .++.+.. . -....|++||.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~--~l~~-------------~~~~~~~~~~~SpDG~~la-~~~~~~~~~~~~~~~i~~~d~ 224 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVR--ELSD-------------DAHRFVTGPRLSPDGRQAV-WLAWDHPRMPWEGTELKTARV 224 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSE--ESSC-------------SCSSEECCCEECTTSSEEE-EEEECTTCCTTTCEEEEEEEE
T ss_pred eEEEEEECCCCccccCCcee--EEEe-------------cCCCcccCceECCCCCEEE-EEECCCCCCCCCCcEEEEEEE
Confidence 4777776443 1111 1110 1123557899999999999 4442210 0 01258999999
Q ss_pred C-CC---cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCC--------cEEE
Q 000992 210 D-SG---TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDS--------TVEL 277 (1196)
Q Consensus 210 ~-~G---~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~--------~V~~ 277 (1196)
. +| +......++.+.+..++|||||++++++..+. ...|..|+..+.... .+...+.. .+..
T Consensus 225 ~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~--~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 225 TEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAAT--QLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp CTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEE--ESSCCSSBSSCCCCSTTCCS
T ss_pred CCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCcee--ecccccccccCccccccCce
Confidence 6 57 55555555667889999999999777666542 346777775332211 12111111 1567
Q ss_pred EEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 278 LKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 278 laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++|+|||++++++.. + +++||.+.
T Consensus 299 ~~~~~~~~~~~~~~~-~---~~~l~~~d 322 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-G---AAVLGILD 322 (662)
T ss_dssp EEECTTSCEEEEEBS-S---SCEEEEEE
T ss_pred EeEeCCCEEEEEEEc-C---ccEEEEEE
Confidence 999999999999988 7 78999543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.4e-12 Score=145.08 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=170.0
Q ss_pred ceeEEeeecCCCEEEEEeCC------------------------CcEEEEecccccccccceeeccccccccccCCCCCC
Q 000992 22 ILQFSALDIEQNRLFFASSA------------------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDS 77 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~------------------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 77 (1196)
.+.++++|++++.+.+.+.+ +.|+.||. .++... .. .... ....
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~--~~g~~~---~~----~~~~---~~~~ 92 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP--NNAEIL---QS----SGKN---LFYL 92 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT--TTCCEE---EE----ECTT---TCSS
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC--CCCeEE---ec----cCCC---ccCC
Confidence 78999999998766555555 25889988 444431 10 0000 1247
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCC--eEEEeee---------ecCcEEEEEECC-CCCEEEEEe-CCceEEEEe
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGN--ATEVVGR---------VEGGVRFISPSP-DGDLLGVTT-GFGQILVMT 144 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~--~~e~vg~---------~~~~I~~~awSP-Dg~~LA~~s-~d~tV~l~~ 144 (1196)
+.+|+++|+|+.+++.+.++.|..|+.++. .+..++. +-.....++++| +|.++++.+ .++.|.+|+
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~ 172 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS 172 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc
Confidence 899999999998888888999999999876 3444431 123589999999 888888887 789999998
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEec--cC
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LK 221 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~ 221 (1196)
.+...+.......... .... ++-.....|+++|| |.+++ +.+ .+++|++|+.++|++..+.. .+
T Consensus 173 ~~g~~~~~~~~~g~~~--~~~~----~~~~~p~gia~d~~~g~l~v-~d~------~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 173 PSGKFVTQWGEESSGS--SPRP----GQFSVPHSLALVPHLDQLCV-ADR------ENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp TTSCEEEEECEECCSS--SCCT----TEESCEEEEEEETTTTEEEE-EET------TTTEEEEEETTTCCEEEEECCTTT
T ss_pred CCCCEEEEeccCCCCC--CCCC----cccCCCcEEEEECCCCEEEE-EEC------CCCEEEEEECCCCcEEEEEecccc
Confidence 7666554432211100 0000 01123578999999 77666 343 46899999996699988874 34
Q ss_pred CCceeEEEEcCCCCeEEEEecCC-CCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceE
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRK-SENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSV 299 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~-~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V 299 (1196)
.....+++|+| |..+++.+... .......|.+|+ .+|.....+.........+..|+++|||.++++...+. .|
T Consensus 240 ~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~---~I 315 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN---TV 315 (329)
T ss_dssp TTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC---CE
T ss_pred CCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC---EE
Confidence 45678999999 65555443211 011245788998 56655443311112234689999999998888877776 89
Q ss_pred EEEEec
Q 000992 300 KICFFS 305 (1196)
Q Consensus 300 ~lW~~~ 305 (1196)
++|+..
T Consensus 316 ~~~~~~ 321 (329)
T 3fvz_A 316 WKFTLT 321 (329)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=165.95 Aligned_cols=220 Identities=11% Similarity=-0.023 Sum_probs=132.7
Q ss_pred CCEEEEEEccCCCEEEEE--ECCCcEEEEEC-CCCeEEEeeeecCcEE---------EEEEC--CCCCE-EEEEeC-Cce
Q 000992 76 DSITAFDYLMEKEALIVG--TSSGLLLLHSV-DGNATEVVGRVEGGVR---------FISPS--PDGDL-LGVTTG-FGQ 139 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a--s~dG~I~lw~~-~~~~~e~vg~~~~~I~---------~~awS--PDg~~-LA~~s~-d~t 139 (1196)
..|.+++|++++-.++.. +.+|+..||.. .++....+..+...|. +.+|| |||+. ||.++. +..
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~ 103 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQR 103 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCC
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCe
Confidence 578999999887666666 55889999984 4555554443344555 56676 99999 887765 445
Q ss_pred EEEEecc--C-ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc----cCCCCEEEEEECCC-
Q 000992 140 ILVMTHD--W-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS----SKLHKRLKVWERDS- 211 (1196)
Q Consensus 140 V~l~~~~--~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~----~~~d~~irVWd~~~- 211 (1196)
|.+|+.. . ... ..+.... ...+...+..++|||||++|| .++.+.. .....+|++||..+
T Consensus 104 l~~~~~~~~g~~~~--~~l~~~~---------~~~~~~~~~~~~~spDg~~l~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 104 LYAFEPDAPGGAVP--RPLTPVS---------AVGGGLRWADPVLLPERGEVW-CMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEEECTTSTTCCCC--EECSCCC---------CSTTCEEEEEEEEETTTTEEE-EEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEEEcCCCCCCCCC--EeccCCc---------cCCCCccccCcEECCCCCEEE-EEEecccCCCCCCceeEEEEEECCCC
Confidence 5444332 1 111 1111100 000234568999999999999 4543210 01125899999966
Q ss_pred -----CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC--CCCeEEEEeCC--CeeEEEEEeccCCCCcEEEEEEcc
Q 000992 212 -----GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN--KCPSIVFYERN--GLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 212 -----G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~--~~~~V~~~e~n--Gl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
|+.....+.+...+..++|||||+.||.++.+.... ....|.+|+.+ |.......+...+...+..++|||
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~sp 251 (662)
T 3azo_A 172 AAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAP 251 (662)
T ss_dssp TTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECT
T ss_pred ccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECC
Confidence 565544314456778899999999999888653100 12478899876 311111122222245799999999
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCE
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
||++++++..++ ...|.+|+..+..
T Consensus 252 dg~l~~~~~~~~-~~~l~~~~~~~~~ 276 (662)
T 3azo_A 252 DGSLIVATDRTG-WWNLHRVDPATGA 276 (662)
T ss_dssp TSCEEEEECTTS-SCEEEEECTTTCC
T ss_pred CCeEEEEECCCC-CeEEEEEECCCCc
Confidence 999777666554 1134444443444
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-11 Score=157.35 Aligned_cols=234 Identities=12% Similarity=0.045 Sum_probs=147.2
Q ss_pred CEEEEEEccCCCEEEEEECCC-----cEEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEEeCCce----------
Q 000992 77 SITAFDYLMEKEALIVGTSSG-----LLLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQ---------- 139 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG-----~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~t---------- 139 (1196)
.+.+++|||||+.||.++.++ +|++||+.+++.. ..+. ..+.+++|||||+.|++++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 478999999999999887654 8999999998764 2222 23678999999999999998766
Q ss_pred ------EEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC--
Q 000992 140 ------ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-- 211 (1196)
Q Consensus 140 ------V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-- 211 (1196)
|.+|...-.......+.... .+......++|||||++|+ +++.... ..+..|++||..+
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~-----------~~~~~~~~~~~SpDg~~l~-~~~~~~~-~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFP-----------DEPKWMGGAELSDDGRYVL-LSIREGC-DPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCT-----------TCTTCEEEEEECTTSCEEE-EEEECSS-SSCCEEEEEEGGGSS
T ss_pred cCCCCEEEEEECCCCcccceEEeccC-----------CCCeEEEEEEEcCCCCEEE-EEEEccC-CCccEEEEEECcccc
Confidence 77765422111001111110 1234467999999999999 4542211 1257899999855
Q ss_pred ----C--cEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEeccCCCCcEEEEEEcc
Q 000992 212 ----G--TLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 212 ----G--~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laWSp 282 (1196)
| ....... +...+.. .|+|+|+.|+..+... .....|..|+.++.. -..+ ++......+.+++|++
T Consensus 271 ~~~~~~~~~~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 271 NGITGILKWVKLID-NFEGEYD-YVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVR 345 (710)
T ss_dssp SSSCSSCCCEEEEC-SSSSCEE-EEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEE-ECCCSSCEEEEEEEET
T ss_pred cccCCccceEEeeC-CCCcEEE-EEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceec-cCCCCCCeEEEEEEEc
Confidence 5 3333333 3333333 5999999998877542 124678889876431 1121 2211123688899998
Q ss_pred CCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCc
Q 000992 283 MSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPL 333 (1196)
Q Consensus 283 Dg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~ 333 (1196)
++.++++...++ ...|.+|+..+.. ..+.+.++......+.|+|++..
T Consensus 346 ~~~lv~~~~~~g-~~~l~~~~~~~g~--~~~~l~~~~~~v~~~~~s~d~~~ 393 (710)
T 2xdw_A 346 SNFLVLCYLHDV-KNTLQLHDLATGA--LLKIFPLEVGSVVGYSGQKKDTE 393 (710)
T ss_dssp TTEEEEEEEETT-EEEEEEEETTTCC--EEEEECCCSSEEEEEECCTTCSE
T ss_pred CCEEEEEEEECC-EEEEEEEECCCCC--EEEecCCCCceEEEEecCCCCCE
Confidence 888998888876 1135556653433 12345544222256788887754
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-11 Score=133.34 Aligned_cols=232 Identities=7% Similarity=0.011 Sum_probs=158.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee------ecCcEEEEEE-CCCCCEEEEEeC-CceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR------VEGGVRFISP-SPDGDLLGVTTG-FGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~------~~~~I~~~aw-SPDg~~LA~~s~-d~tV~l~~~~~ 147 (1196)
..+.+|+++|+|+.+++.+.++.|.+||.++..+...+. +...+.++++ +++|+++++... ++.|.+|+.+.
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g 109 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 109 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC
Confidence 468999999999988888889999999998765554432 2246899999 688887777643 78899887665
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec--cCCCce
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMG 225 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~~~~v 225 (1196)
..+...... +......|++.|||++++ +.+ .++.|++||. +|+...... +.....
T Consensus 110 ~~~~~~~~~---------------~~~~~~~i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 110 QFVRKFGAT---------------ILQHPRGVTVDNKGRIIV-VEC------KVMRVIIFDQ-NGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp CEEEEECTT---------------TCSCEEEEEECTTSCEEE-EET------TTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred cEEEEecCc---------------cCCCceEEEEeCCCCEEE-EEC------CCCEEEEEcC-CCCEEEEeCCCCccCCc
Confidence 544333211 113458899999999877 443 3578999998 788776653 233456
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..|+++|+|+++++.+.+ ..|..|+.+|.....+.... ....+..|+++|||+++++...++ +.|++|+..
T Consensus 167 ~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~--~~i~~~~~~ 237 (286)
T 1q7f_A 167 NGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNN--FNLTIFTQD 237 (286)
T ss_dssp EEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSS--CEEEEECTT
T ss_pred EEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCC--EEEEEECCC
Confidence 899999999988776653 57999999886544332111 124688999999999888876541 169999965
Q ss_pred CCEEEEEEEEEEecCC--cEEEEEccCCCceEEEEecCCcE
Q 000992 306 NNHWYLKYEIRYLRRD--GIRFMWHPTKPLQLICWTLDGQI 344 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~--~~~v~Wsp~~~~~L~~~~~~g~~ 344 (1196)
... ...+..+... +..+.|+|++. |.+.+.++.+
T Consensus 238 g~~---~~~~~~~~~~~~~~~i~~~~~g~--l~vs~~~~~v 273 (286)
T 1q7f_A 238 GQL---ISALESKVKHAQCFDVALMDDGS--VVLASKDYRL 273 (286)
T ss_dssp SCE---EEEEEESSCCSCEEEEEEETTTE--EEEEETTTEE
T ss_pred CCE---EEEEcccCCCCcceeEEECCCCc--EEEECCCCeE
Confidence 421 2233332221 25678888763 3444444444
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-11 Score=136.68 Aligned_cols=222 Identities=10% Similarity=0.003 Sum_probs=153.0
Q ss_pred ceeEEeeecCCCEEEE-EeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFF-ASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~-~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.||. .+.++.|+.|+. ..+ . .. +. .+...+.+++++|||+.+++.+.++.|.
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~--~~~-~--~~------~~----~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSD--DGQ-L--SP------EM----HPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEET--TSC-E--EE------EE----SSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEEC--CCC-e--EE------EE----CCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 5678999999995555 456778999998 443 2 11 11 1235789999999999887776678999
Q ss_pred EEECCCCeEEEe-eee----cCcEEEEEECCCCCEEEEEeC-----------------CceEEEEeccCceeeeeecccc
Q 000992 101 LHSVDGNATEVV-GRV----EGGVRFISPSPDGDLLGVTTG-----------------FGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 101 lw~~~~~~~e~v-g~~----~~~I~~~awSPDg~~LA~~s~-----------------d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+||..++++..+ ... ...+..++++|||+++++.+. .+.|..++..... ... .
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~-~--- 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAP-I--- 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE-EEE-E---
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE-EEe-e---
Confidence 999977766532 221 234678999999999887431 2344444332111 110 0
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcE---EEEeccCCCceeEEEEcCCC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTL---QASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l---~~~~e~~~~~v~slawsPdG 234 (1196)
.+......++|+|||++++ +.+ .++.|++|+.. +|.+ ...+....+....+++.|+|
T Consensus 169 ------------~~~~~~~gi~~s~dg~~lv-~~~------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G 229 (296)
T 3e5z_A 169 ------------RDRVKPNGLAFLPSGNLLV-SDT------GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG 229 (296)
T ss_dssp ------------CCCSSEEEEEECTTSCEEE-EET------TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS
T ss_pred ------------cCCCCCccEEECCCCCEEE-EeC------CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC
Confidence 1113447899999999886 554 35799999985 6766 33333345566789999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEccC
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFE 294 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~d~ 294 (1196)
++.++. . ..|..|+.+|.....+..+ .. +.+++| +||++.|.+++.++
T Consensus 230 ~l~v~~-~-------~~v~~~~~~g~~~~~~~~~---~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 230 LIWASA-G-------DGVHVLTPDGDELGRVLTP---QT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CEEEEE-T-------TEEEEECTTSCEEEEEECS---SC-CCEEEEESTTSCEEEEEETTE
T ss_pred CEEEEc-C-------CeEEEECCCCCEEEEEECC---CC-ceeEEEECCCCCEEEEEcCCe
Confidence 988776 2 3699999998776654432 23 889999 69999999998876
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-11 Score=137.82 Aligned_cols=278 Identities=13% Similarity=0.035 Sum_probs=174.5
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..++|++++..++.++.+..+..|.. . ...+ +... ...+.+++|+|+|+.+++++.+|.|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~----~~~~----~~~~~~~~~~~~g~l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITA---E-----PWLE----ISKK----GLQLEGLNFDRQGQLFLLDVFEGNIFK 70 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEEC---E-----EEEE----EESS----CCCEEEEEECTTSCEEEEETTTCEEEE
T ss_pred ccceeeecCCccceeEEeecccCccccc---c-----eeEE----Eecc----CccccCcEECCCCCEEEEECCCCEEEE
Confidence 4566788888888887766666666632 1 1111 1111 246789999999998888888999999
Q ss_pred EECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 102 HSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 102 w~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
||.+++++..+. .+...+.+++|+|||+++++...+ +.|.+|+......... +... .....+
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~------------~~~~~~ 137 (333)
T 2dg1_A 71 INPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI-IEDL------------STAYCI 137 (333)
T ss_dssp ECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE-ECSS------------SSCCCE
T ss_pred EeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE-EccC------------ccCCcc
Confidence 999988765332 345779999999999988877766 6787776433222111 1100 112356
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
..++|+|||++++ +...+........|..|+..++++..... .......++|+|||+.|..+... ...|..|+
T Consensus 138 ~~i~~d~~g~l~v-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~-----~~~i~~~d 210 (333)
T 2dg1_A 138 DDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETT-----ANRLHRIA 210 (333)
T ss_dssp EEEEECTTSCEEE-EECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGG-----GTEEEEEE
T ss_pred cceEECCCCCEEE-EeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCC-----CCeEEEEE
Confidence 8999999999887 34311000113567777775556554332 22346889999999966555432 24788888
Q ss_pred C--CCeeEEEEE----eccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC------CcEE
Q 000992 257 R--NGLERSSFD----INEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR------DGIR 324 (1196)
Q Consensus 257 ~--nGl~~~~f~----l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~------~~~~ 324 (1196)
. +|.....+. ........+..+++++||.++++...++ .|.+|+.+.. ....+..+.. ....
T Consensus 211 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~---~v~~~d~~g~---~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 211 LEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG---RVLVFNKRGY---PIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp ECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT---EEEEECTTSC---EEEEEECTTGGGTCSCBCCE
T ss_pred ecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC---EEEEECCCCC---EEEEEEcCCCccccccCcce
Confidence 6 443221111 1111123678899999999888877666 7999998542 1233333221 2367
Q ss_pred EEEccCCCceEEEEecCC
Q 000992 325 FMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 325 v~Wsp~~~~~L~~~~~~g 342 (1196)
+.|+|++. .|.+.+.+|
T Consensus 285 ~~~~~dg~-~L~v~~~~g 301 (333)
T 2dg1_A 285 PQFIPGTN-QLIICSNDI 301 (333)
T ss_dssp EEECTTSC-EEEEEEECG
T ss_pred EEECCCCC-EEEEEeCcc
Confidence 88888864 366555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=132.57 Aligned_cols=231 Identities=10% Similarity=0.062 Sum_probs=151.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC----C
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----G 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----G 97 (1196)
.+.+++||+++..+++.+.++.|+.|+. .+++.. .+ . ..+...|.+++|+|||+.+++...+ +
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~--~~~~~~-~~-------~---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINP--ETKEIK-RP-------F---VSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECT--TTCCEE-EE-------E---ECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeC--CCCcEE-EE-------e---eCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 5678899999884445567788999998 444321 11 1 0113579999999999988777666 6
Q ss_pred cEEEEECCCCeEE-Eee--eecCcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecccccCccccccCc
Q 000992 98 LLLLHSVDGNATE-VVG--RVEGGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 98 ~I~lw~~~~~~~e-~vg--~~~~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
.|.+||.+++.+. ... .....+.+++|+|||+++++... .+.|..++.......... .
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~----------- 179 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--Q----------- 179 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--E-----------
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--c-----------
Confidence 8999999987654 322 12356999999999998876654 244544432211111110 0
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEE--------eccCCCceeEEEEcCCCCeEEE
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQAS--------SELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~--------~e~~~~~v~slawsPdG~~IAs 239 (1196)
.......++|+|||+++. ++. ..++.|.+|+.. +|..... ..++ .....+++.|+|++.++
T Consensus 180 ---~~~~~~~i~~~~dg~~l~-v~~-----~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~ 249 (333)
T 2dg1_A 180 ---NISVANGIALSTDEKVLW-VTE-----TTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVA 249 (333)
T ss_dssp ---EESSEEEEEECTTSSEEE-EEE-----GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEE
T ss_pred ---CCCcccceEECCCCCEEE-EEe-----CCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEE
Confidence 002347899999998665 343 134789999985 3443221 1111 35688999999998887
Q ss_pred EecCCCCCCCCeEEEEeCCCeeEEEEEeccCCC---CcEEEEEEccCCCeeEEEEccC
Q 000992 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQID---STVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~---~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
...+ ..|..|+.+|.....+.++.... ..+.+++|+|||+.|.+++.++
T Consensus 250 ~~~~------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 250 MYGQ------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EETT------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EcCC------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 7543 46999999887665554432101 1588999999998887776654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-10 Score=148.51 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=142.6
Q ss_pred CEEEEEEccCCCEEEEEECC-----CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCce------------
Q 000992 77 SITAFDYLMEKEALIVGTSS-----GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ------------ 139 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~d-----G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t------------ 139 (1196)
.+.+++|||||+.||.++.+ .+|++||+.+++..........+..++|||| +.|++++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 57899999999999988754 3599999999875322111112357899999 99999987664
Q ss_pred --EEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--c-E
Q 000992 140 --ILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--T-L 214 (1196)
Q Consensus 140 --V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~-l 214 (1196)
|.+|...-.......+... ..+...+..++|||||++++ +++.+.. .....|++||..+| + .
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~-----------~~~~~~~~~~~~SpDG~~l~-~~~~~~~-~~~~~l~~~d~~~~~~~~~ 309 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFAT-----------PELPKRGHGASVSSDGRWVV-ITSSEGT-DPVNTVHVARVTNGKIGPV 309 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECC-----------TTCTTCEEEEEECTTSCEEE-EEEECTT-CSCCEEEEEEEETTEECCC
T ss_pred CEEEEEECCCCchhCEEEecc-----------CCCCeEEEEEEECCCCCEEE-EEEEccC-CCcceEEEEECCCCCCccc
Confidence 5555432111000011000 01223478999999999998 4543211 13468999999666 4 4
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe--eEEEEEeccCCCCcEEEEEEccCCCeeEEEEc
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL--ERSSFDINEQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl--~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.....+..+. ... |+|+|+.|+..+.+. .....|..|+.++. ....+ ++. ....+.+++|+ ++.++++...
T Consensus 310 ~~l~~~~~~~-~~~-~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l-~~~-~~~~l~~~~~~-~~~lv~~~~~ 382 (741)
T 1yr2_A 310 TALIPDLKAQ-WDF-VDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTV-VPE-SKDNLESVGIA-GNRLFASYIH 382 (741)
T ss_dssp EEEECSSSSC-EEE-EEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEE-ECC-CSSEEEEEEEE-BTEEEEEEEE
T ss_pred EEecCCCCce-EEE-EeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEE-ecC-CCCeEEEEEEE-CCEEEEEEEE
Confidence 4443333333 333 459999999887642 12467888987652 21221 232 23457788998 7778888888
Q ss_pred cCCcceEEEEEec-CCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 293 FEEYDSVKICFFS-NNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 293 d~~~~~V~lW~~~-n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
++ ..+||... +.. ..+.+.++.... ..+.|+|++..
T Consensus 383 dg---~~~l~~~~~~g~--~~~~l~~~~~~~v~~~~~s~d~~~ 420 (741)
T 1yr2_A 383 DA---KSQVLAFDLDGK--PAGAVSLPGIGSASGLSGRPGDRH 420 (741)
T ss_dssp TT---EEEEEEEETTSC--EEEECBCSSSCEEEEEECCBTCSC
T ss_pred CC---EEEEEEEeCCCC--ceeeccCCCCeEEEEeecCCCCCE
Confidence 87 77777664 222 123444432222 66789998765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-11 Score=133.80 Aligned_cols=243 Identities=10% Similarity=0.021 Sum_probs=156.9
Q ss_pred CCEEEEEEccCCCEEEEEECC------------------------CcEEEEECCCCeEE-Eee-eecCcEEEEEECCCCC
Q 000992 76 DSITAFDYLMEKEALIVGTSS------------------------GLLLLHSVDGNATE-VVG-RVEGGVRFISPSPDGD 129 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~d------------------------G~I~lw~~~~~~~e-~vg-~~~~~I~~~awSPDg~ 129 (1196)
+.|.+|+++|+|+.+++.+.+ |+|.+||..++++. ..+ .+-.....++++|||+
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~ 103 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN 103 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence 579999999999999888777 57999999876653 333 2224689999999999
Q ss_pred EEEEEeCCceEEEEeccCc--eeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEE
Q 000992 130 LLGVTTGFGQILVMTHDWD--LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKV 206 (1196)
Q Consensus 130 ~LA~~s~d~tV~l~~~~~d--~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irV 206 (1196)
++++.+.++.|.+|+.+.. .+....-.... +. -.++-.....|+++| +|.+++ +.+. .++.|++
T Consensus 104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-g~------~~~~~~~P~~ia~~~~~g~lyv-~d~~-----~~~~I~~ 170 (329)
T 3fvz_A 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-GS------DQNHFCQPTDVAVEPSTGAVFV-SDGY-----CNSRIVQ 170 (329)
T ss_dssp EEEEETTTTEEEEECTTCSSCCSEEESBTTBC-CC------STTCCSSEEEEEECTTTCCEEE-EECS-----SCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCeEEEEEecccCCC-CC------CccccCCCcEEEEeCCCCeEEE-EeCC-----CCCeEEE
Confidence 9988888999999876554 22222100000 00 001123468999999 888887 4421 3589999
Q ss_pred EECCCCcEEEEeccCC----------CceeEEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCc
Q 000992 207 WERDSGTLQASSELKA----------FMGAVLEWMPS-GANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDST 274 (1196)
Q Consensus 207 Wd~~~G~l~~~~e~~~----------~~v~slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~ 274 (1196)
|+. +|++..+..... .....|+++|+ |+++++... ...|+.|+.+ |.....+.... ....
T Consensus 171 ~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~~~I~~~~~~~G~~~~~~~~~~-~~~~ 242 (329)
T 3fvz_A 171 FSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------NGRIQCFKTDTKEFVREIKHAS-FGRN 242 (329)
T ss_dssp ECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------TTEEEEEETTTCCEEEEECCTT-TTTC
T ss_pred EcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------CCEEEEEECCCCcEEEEEeccc-cCCC
Confidence 998 999888764211 23689999999 666665544 3589999987 87665443222 2346
Q ss_pred EEEEEEccCCCeeEEEEcc----CCcceEEEEEecCCEEEEEEEEEE---ecCCcEEEEEccCCCceEEEEe-cCCcE
Q 000992 275 VELLKWNCMSDLLAAVVRF----EEYDSVKICFFSNNHWYLKYEIRY---LRRDGIRFMWHPTKPLQLICWT-LDGQI 344 (1196)
Q Consensus 275 V~~laWSpDg~~LAs~~~d----~~~~~V~lW~~~n~~wylkq~l~~---~~~~~~~v~Wsp~~~~~L~~~~-~~g~~ 344 (1196)
+..++|+| |.++++.+.. ....+|++|+..+... ...+.. ....+..++++|++ . |.+.. .++.+
T Consensus 243 ~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG-~-lyvad~~~~~I 315 (329)
T 3fvz_A 243 VFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDG-T-VYIGDAHTNTV 315 (329)
T ss_dssp EEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTS-E-EEEEESSSCCE
T ss_pred cceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCC-C-EEEEECCCCEE
Confidence 88999999 4444333211 1123799999877642 222210 01123778889887 3 44444 34444
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-11 Score=153.26 Aligned_cols=270 Identities=9% Similarity=-0.035 Sum_probs=158.4
Q ss_pred ecCCCEEEEEeCCC-----cEEEEecccccccccceeeccccccc-cccCCCCCCEEEEEEccCCCEEEEEE-----CCC
Q 000992 29 DIEQNRLFFASSAN-----NIYSAQLSSFQNERASIKTAISAEIE-HIDLEPGDSITAFDYLMEKEALIVGT-----SSG 97 (1196)
Q Consensus 29 d~~~~~l~~~s~~~-----~i~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~v~~v~~spd~~~La~as-----~dG 97 (1196)
.++++.+|+...+. .|+..+. ..++ ..+.+-+..+. ++ ...+.+++|||||+.||.+. .+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~--~~~~--~~~l~d~~~~a~~~----~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQG--ESGQ--EKVLLDPNGWSKDG----TVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEES--TTSC--CEEEECGGGSSSSS----CEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcC--CCCC--cEEEEchHHhccCC----CEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 37888888886532 2455544 2222 22210001111 11 12588999999999999543 345
Q ss_pred cEEEEECCCCeEEEeeeecCcE--EEEEECCCCCEEEEEeCCce-------------EEEEeccCceeeeeecccccCcc
Q 000992 98 LLLLHSVDGNATEVVGRVEGGV--RFISPSPDGDLLGVTTGFGQ-------------ILVMTHDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I--~~~awSPDg~~LA~~s~d~t-------------V~l~~~~~d~~~~~~l~~~~~~~ 162 (1196)
+|++||+.+++....+. -.++ ..++|||||+.|++++.|.+ |.+|+..-.......+...
T Consensus 148 ~i~v~dl~tg~~~~~~~-~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~---- 222 (695)
T 2bkl_A 148 VLHVIDVDSGEWSKVDV-IEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER---- 222 (695)
T ss_dssp EEEEEETTTCCBCSSCC-BSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC----
T ss_pred EEEEEECCCCCCcCCcc-cCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec----
Confidence 89999999876531111 1223 67999999999999998776 8777643221111111111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEec
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
..+...+..++|||||++++ +++.+. .....|.+|+..+|+......+.. .+....| |+|. |...+.
T Consensus 223 -------~~~~~~~~~~~~SpDG~~l~-~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~-~~~~~~~-~~g~-l~~~s~ 289 (695)
T 2bkl_A 223 -------TGDPTTFLQSDLSRDGKYLF-VYILRG--WSENDVYWKRPGEKDFRLLVKGVG-AKYEVHA-WKDR-FYVLTD 289 (695)
T ss_dssp -------CCCTTCEEEEEECTTSCCEE-EEEEET--TTEEEEEEECTTCSSCEEEEECSS-CCEEEEE-ETTE-EEEEEC
T ss_pred -------CCCCEEEEEEEECCCCCEEE-EEEeCC--CCceEEEEEcCCCCceEEeecCCC-ceEEEEe-cCCc-EEEEEC
Confidence 02234578999999999998 454321 023478888775666655544333 3455567 7777 544443
Q ss_pred CCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEEEEEEEEe
Q 000992 243 RKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYLKYEIRYL 318 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wylkq~l~~~ 318 (1196)
.. .....|..|+.++... ..+ ++......|.+++|+ ++.++++...++ ..+||... +.. ..+.+.++
T Consensus 290 ~~--~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~--~~~~l~~~ 360 (695)
T 2bkl_A 290 EG--APRQRVFEVDPAKPARASWKEI-VPEDSSASLLSVSIV-GGHLSLEYLKDA---TSEVRVATLKGK--PVRTVQLP 360 (695)
T ss_dssp TT--CTTCEEEEEBTTBCSGGGCEEE-ECCCSSCEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCC--EEEECCCS
T ss_pred CC--CCCCEEEEEeCCCCCccCCeEE-ecCCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCC--eeEEecCC
Confidence 21 1246898998754221 121 222223468889999 888999999888 78888765 221 12334443
Q ss_pred cCCc-EEEEEccCCCc
Q 000992 319 RRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 319 ~~~~-~~v~Wsp~~~~ 333 (1196)
.... ..+.|+|++..
T Consensus 361 ~~~~v~~~~~s~d~~~ 376 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDD 376 (695)
T ss_dssp SSSEECCCBSCTTCSE
T ss_pred CCeEEEEeecCCCCCE
Confidence 2222 45678887754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=8.5e-11 Score=136.57 Aligned_cols=309 Identities=14% Similarity=0.100 Sum_probs=172.6
Q ss_pred CCCEEEEEE------CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeC----------CceEEEEec-cC
Q 000992 86 EKEALIVGT------SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQILVMTH-DW 147 (1196)
Q Consensus 86 d~~~La~as------~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~----------d~tV~l~~~-~~ 147 (1196)
+++.+.++. .||+|.+||..++++. .+.....+ .++|||||++|.+++. +++|.+|+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555555543 4789999999887653 22221233 8999999999999862 678988863 34
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCcee
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGA 226 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~ 226 (1196)
..+.++.+.... + .+......++++|||++|. ++... .+.+|.|||..+++...+ .. +.+. +
T Consensus 92 ~~~~~i~~~~~~---------~-~~g~~p~~i~~spdg~~l~-v~n~~----~~~~v~v~d~~~~~~~~~~i~-~~~~-~ 154 (361)
T 2oiz_A 92 TFEKEISLPPKR---------V-QGLNYDGLFRQTTDGKFIV-LQNAS----PATSIGIVDVAKGDYVEDVTA-AAGC-W 154 (361)
T ss_dssp CEEEEEEECTTB---------C-CBCCCGGGEEECTTSSEEE-EEEES----SSEEEEEEETTTTEEEEEEGG-GTTE-E
T ss_pred cEEEEEEcCccc---------c-ccCCCcceEEECCCCCEEE-EECCC----CCCeEEEEECCCCcEEEEEec-CCCc-c
Confidence 555555433211 0 0012236799999999998 66421 247899999999988776 43 3322 3
Q ss_pred EEEEcCCC-CeEEEEecCCCCCCCCeEEEEeC--CCeeEEEEEe-c--cCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 227 VLEWMPSG-ANIAAVYDRKSENKCPSIVFYER--NGLERSSFDI-N--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 227 slawsPdG-~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~f~l-~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
.+.+.|+| ..+++.+.+. .+.+|.. +|........ . .... ....+.++|||..++..+.++ .|.
T Consensus 155 ~v~~~p~~~~~~~~~~~dg------~~~~v~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~---~v~ 224 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDG------GLLTINLGEDGKVASQSRSKQMFSVKD-DPIFIAPALDKDKAHFVSYYG---NVY 224 (361)
T ss_dssp EEEECTTSSSEEEEEETTS------SEEEEEECTTSSEEEEEECCCCSCTTT-SCBCSCCEECSSEEEEEBTTS---EEE
T ss_pred eeEEcCCCCeeEEEECCCC------cEEEEEECCCCcEeeeccccceEcCCC-CceEEEecccCCEEEEEeCCC---eEE
Confidence 46677876 4555555542 3555542 3433211110 0 0111 112345588898888877776 899
Q ss_pred EEEecCCEEEEEEEEEEec----------CCcEEEEEccCCCceEEEEec-CCcEEEEEEEEeeecCCCeeEEEEcCCEE
Q 000992 301 ICFFSNNHWYLKYEIRYLR----------RDGIRFMWHPTKPLQLICWTL-DGQITTYNFIWTTAVMENSTALVIDGSKI 369 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~----------~~~~~v~Wsp~~~~~L~~~~~-~g~~~~~~~~~~~~~~d~~~v~viDg~~l 369 (1196)
+|++..........+.... .....+.++|++.. +.+... +|.. ++ ..+....+.++|-.+.
T Consensus 225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~-lyv~~~~~~~~------~~-~~~~~~~v~viD~~t~ 296 (361)
T 2oiz_A 225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGR-MYVFMHPDGKE------GT-HKFPAAEIWVMDTKTK 296 (361)
T ss_dssp EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTE-EEEEEESSCCT------TC-TTCCCSEEEEEETTTT
T ss_pred EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCe-EEEEEccCCCc------cc-ccCCCceEEEEECCCC
Confidence 9998643221212221100 00012445555443 333221 1100 00 0001224555553322
Q ss_pred EEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCC--CccccccCCceeeeeecccccC
Q 000992 370 LVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAP--DMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 370 ~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~--~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
+ ...++.... +++++|+||| +.|+++.. ++|.+||..+. .....+.+ .-
T Consensus 297 ~-------------~v~~i~~~~-p~~ia~spdg--~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~------------~G 347 (361)
T 2oiz_A 297 Q-------------RVARIPGRD-ALSMTIDQQR--NLMLTLDG-GNVNVYDISQPEPKLLRTIEG------------AA 347 (361)
T ss_dssp E-------------EEEEEECTT-CCEEEEETTT--TEEEEECS-SCEEEEECSSSSCEEEEEETT------------SC
T ss_pred c-------------EEEEEecCC-eeEEEECCCC--CEEEEeCC-CeEEEEECCCCcceeeEEecc------------CC
Confidence 1 112333334 8899999999 88888776 99999998864 33322110 11
Q ss_pred CcEEEEEEecCCe
Q 000992 448 GSVIHLIWLGSHL 460 (1196)
Q Consensus 448 ~~v~~l~~~~d~~ 460 (1196)
..++.++++|+|.
T Consensus 348 ~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 348 EASLQVQFHPVGG 360 (361)
T ss_dssp SSEEEEEECCCSC
T ss_pred CCcEEEEecCCCC
Confidence 3678899999874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.1e-10 Score=137.10 Aligned_cols=340 Identities=13% Similarity=0.003 Sum_probs=203.7
Q ss_pred eecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECC-
Q 000992 28 LDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVD- 105 (1196)
Q Consensus 28 ~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~- 105 (1196)
.|+ ++.+|++ .+++.+..+|. .+++. +.+++. +..+..+.|||||+.|.+++.+|.|.+||..
T Consensus 163 ~d~-~~~~~V~~~~~~~V~viD~--~t~~v---~~~i~~---------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 163 WDL-ENLFSVTLRDAGQIALIDG--STYEI---KTVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp CCG-GGEEEEEETTTTEEEEEET--TTCCE---EEEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred cCC-CceEEEEeCCCCeEEEEEC--CCCeE---EEEEeC---------CCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 444 4566666 45778999998 55554 222222 2357799999999999999999999999995
Q ss_pred -CCeE-EEeeeecCcEEEEEEC----CCCCEEEEEeC-CceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 106 -GNAT-EVVGRVEGGVRFISPS----PDGDLLGVTTG-FGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 106 -~~~~-e~vg~~~~~I~~~awS----PDg~~LA~~s~-d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
++++ ..+.. ..+-..++|| |||++|.++.. +++|.+++ ..++++..+...... +....+++ ...+.
T Consensus 228 ~t~~~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~----~~~~~~~p-~~rva 301 (567)
T 1qks_A 228 KEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT----YDEQEYHP-EPRVA 301 (567)
T ss_dssp SSCCEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC----TTTCCEES-CCCEE
T ss_pred CCCcEeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc----cccccccC-CCceE
Confidence 5443 22221 2346789999 79999988875 58898886 456666555443211 00000000 12567
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
.|..|+++..++ ++.. ..++|.++|..+.+..... -+.....+.+.|+|||+++.++... .+.|.+++
T Consensus 302 ~i~~s~~~~~~v-v~~~-----~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~-----sn~V~ViD 370 (567)
T 1qks_A 302 AILASHYRPEFI-VNVK-----ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVID 370 (567)
T ss_dssp EEEECSSSSEEE-EEET-----TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEE
T ss_pred EEEEcCCCCEEE-EEec-----CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCC-----CCeEEEEE
Confidence 899999988777 5542 4589999998554332222 1233445789999999998777654 35788998
Q ss_pred C-CCeeEEEEEe-c-cCCCCcEEEEEEccCCC-eeEEEE-ccCCcceEEEEEecC-----CEEEEEEEEEEecCCcEEEE
Q 000992 257 R-NGLERSSFDI-N-EQIDSTVELLKWNCMSD-LLAAVV-RFEEYDSVKICFFSN-----NHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 257 ~-nGl~~~~f~l-~-~~~~~~V~~laWSpDg~-~LAs~~-~d~~~~~V~lW~~~n-----~~wylkq~l~~~~~~~~~v~ 326 (1196)
. .|.......+ . .++.+.-..+ +.|++. +.++.. .++ +|.++++.. +.|...+++.........+.
T Consensus 371 ~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~---~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~ 446 (567)
T 1qks_A 371 TKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDD---SVALIGTDPEGHPDNAWKILDSFPALGGGSLFIK 446 (567)
T ss_dssp TTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred CCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCC---eEEEecCCCCCCccccCEEEEEEecCCCCCEEEE
Confidence 5 4444443333 1 2332222122 588854 444432 334 799999876 23755666665322226677
Q ss_pred EccCCCceEEEEecCCcEEEEEEEEeeecC--CCeeEEEEcCCEE---------EEeecccc-CCCCCceeeeecCCCCE
Q 000992 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVM--ENSTALVIDGSKI---------LVTPLSLS-LMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~--d~~~v~viDg~~l---------~lt~l~~~-~vpppm~~~~l~~~~~V 394 (1196)
.||+++. |.+.+.-+ ++ -...++|+|-.++ .+-+...| .+|. -...+
T Consensus 447 ~~p~~~~-l~v~~~~~------------~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~~ 505 (567)
T 1qks_A 447 THPNSQY-LYVDATLN------------PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE--------GQPRV 505 (567)
T ss_dssp CCTTCSE-EEEECTTC------------SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS--------SCCEE
T ss_pred eCCCCCe-EEEecCCC------------CCcccCceEEEEECCcccccccCCCcEEeccccccccCC--------CCcce
Confidence 8888764 44433100 11 0124556655443 22222111 1111 13468
Q ss_pred EEEEEecCCCCCEE-EEEE----CCCcEEEEeCCCCC
Q 000992 395 TEMAFYSKSSKNCL-AAIL----SDGCLCVVDLPAPD 426 (1196)
Q Consensus 395 ~~Vafspdg~~~~l-As~~----~dg~v~lw~~~~~~ 426 (1196)
..+.|+|+| +.+ ++.. .++.|.++|..+..
T Consensus 506 ~~~~~~~~G--~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 506 VQGEFNKDG--TEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEEECTTS--SEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EeeeECCCC--CEEEEEeecCCCCCCcEEEEECCCce
Confidence 899999999 554 4443 37899999987643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-10 Score=148.00 Aligned_cols=248 Identities=9% Similarity=-0.015 Sum_probs=161.3
Q ss_pred ceeEEeeecCCCEEEEEeCCC-----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASSAN-----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~-----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+...+|.+|+..|+++++++ .|+.||+ .+++.. .. + +. ...+.+++|+|||+.|+.++.+
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~--~tg~~~-~~-~----~~------~~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV--DGAKEL-PD-V----LE------RVKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEET--TTTEEE-EE-E----EE------EECSCCEEECTTSSEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC--CCCCCC-cc-c----cc------CcccceEEEEeCCCEEEEEEEC
Confidence 366789999999998886532 7999999 555431 11 1 11 1135679999999999999988
Q ss_pred Cc----------------EEEEECCCCeE---EEeee--ecCcEEEEEECCCCCEEEEEeC-----CceEEEEeccC---
Q 000992 97 GL----------------LLLHSVDGNAT---EVVGR--VEGGVRFISPSPDGDLLGVTTG-----FGQILVMTHDW--- 147 (1196)
Q Consensus 97 G~----------------I~lw~~~~~~~---e~vg~--~~~~I~~~awSPDg~~LA~~s~-----d~tV~l~~~~~--- 147 (1196)
+. |.+|++.+++. .+... +...+..++|||||++|++++. +..|.+|+..-
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccc
Confidence 76 99999987642 22221 3455889999999999999875 45677765321
Q ss_pred ---ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc---EEEEeccC
Q 000992 148 ---DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSELK 221 (1196)
Q Consensus 148 ---d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~---l~~~~e~~ 221 (1196)
.......+. .+.+.+. ..|+|||+.|+ +.+-.. .....|.+||..++. ......+.
T Consensus 272 ~~~~~~~~~~l~--------------~~~~~~~-~~~s~dg~~l~-~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~ 333 (710)
T 2xdw_A 272 GITGILKWVKLI--------------DNFEGEY-DYVTNEGTVFT-FKTNRH--SPNYRLINIDFTDPEESKWKVLVPEH 333 (710)
T ss_dssp SSCSSCCCEEEE--------------CSSSSCE-EEEEEETTEEE-EEECTT--CTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred ccCCccceEEee--------------CCCCcEE-EEEeccCCEEE-EEECCC--CCCCEEEEEeCCCCCcccceeccCCC
Confidence 000001111 1122233 36999999888 444211 135689999996664 23333333
Q ss_pred C-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-Ccce
Q 000992 222 A-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDS 298 (1196)
Q Consensus 222 ~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~ 298 (1196)
+ ..+.+++|+|++.++++...+. ...|.+|+. +|..... +..+ .+.|..++|||||+.|+...... .-.+
T Consensus 334 ~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~--l~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 334 EKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKI--FPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGI 406 (710)
T ss_dssp SSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEE--ECCC-SSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred CCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEe--cCCC-CceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence 3 3678899999888888888764 345777886 6754343 3333 45788999999998777654332 1226
Q ss_pred EEEEEecCCE
Q 000992 299 VKICFFSNNH 308 (1196)
Q Consensus 299 V~lW~~~n~~ 308 (1196)
|.+|++.+..
T Consensus 407 i~~~d~~tg~ 416 (710)
T 2xdw_A 407 IYHCDLTKEE 416 (710)
T ss_dssp EEEEETTSSS
T ss_pred EEEEECCCCc
Confidence 8889887643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-10 Score=125.74 Aligned_cols=237 Identities=7% Similarity=-0.046 Sum_probs=155.9
Q ss_pred ceeEEeeecCCCEEEE-E-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFF-A-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~-~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I 99 (1196)
.+.++++|+++. ||+ + +.++.|+.|+. ..+.. .. + .......+.+|++.|+|+.+++.. +|.|
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~--~~~~~--~~------~---~~~~~~~p~~i~~~~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLAT--GSTGT--TV------L---PFNGLYQPQGLAVDGAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC---------EE------C---CCCSCCSCCCEEECTTCCEEEEET-TTEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecC--CCccc--ce------E---eeCCcCCcceeEECCCCCEEEEcC-CCEE
Confidence 567899999887 777 6 45778999987 33322 11 0 011124678899999999555544 8899
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
..|+.+++....... ....+.+++++|||++.++.+.++.|.+|+.. .... .... . ........
T Consensus 90 ~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~-~~~~-~------------~~~~~p~~ 154 (270)
T 1rwi_B 90 VTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQ-TVLP-F------------TGLNDPDG 154 (270)
T ss_dssp EEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSC-EECC-C------------CSCCSCCC
T ss_pred EEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-Ccee-Eeec-c------------ccCCCcee
Confidence 999998876553322 12568999999999988777778888877421 1100 0000 0 01123468
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
|+++|||++++ +.. .++.|.+|+..++...............|++.|+|++.++...+ ..|..|+.+
T Consensus 155 i~~~~~g~l~v-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~------~~v~~~~~~ 221 (270)
T 1rwi_B 155 VAVDNSGNVYV-TDT------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT------NQVVKLLAG 221 (270)
T ss_dssp EEECTTCCEEE-EEG------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT------SCEEEECTT
T ss_pred EEEeCCCCEEE-EEC------CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCC------CcEEEEcCC
Confidence 99999999777 343 24789999995444433322222456899999999877776543 468899988
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
|..... ....+-..+..|+++|||+++++...++ .|++++...
T Consensus 222 ~~~~~~--~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~v~~~~~~~ 264 (270)
T 1rwi_B 222 STTSTV--LPFTGLNTPLAVAVDSDRTVYVADRGND---RVVKLTSLE 264 (270)
T ss_dssp CSCCEE--CCCCSCSCEEEEEECTTCCEEEEEGGGT---EEEEECCCG
T ss_pred CCccee--eccCCCCCceeEEECCCCCEEEEECCCC---EEEEEcCCC
Confidence 754321 2211224689999999999887777777 899988764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-10 Score=126.22 Aligned_cols=234 Identities=11% Similarity=0.034 Sum_probs=150.8
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeee
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~ 153 (1196)
..+.+++|+|+|+ .+++++.+|.|..|+.+++ ..........+.+++|+|||+++++..+++.|.+|+. +.... ..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~-~~ 105 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE-SI 105 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE-EE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE-EE
Confidence 4578999999999 7788888999999999988 6655555677999999999999888777788988864 33321 11
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEe---eccc------c-ccCCCCEEEEEECCCCcEEEEeccCCC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL---SEFC------N-SSKLHKRLKVWERDSGTLQASSELKAF 223 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv---ss~d------~-~~~~d~~irVWd~~~G~l~~~~e~~~~ 223 (1196)
. .... .. ....+..++|+|||++++|- ++.+ . .....+.|..++. .|++..... ...
T Consensus 106 ~-~~~~-~~---------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~~~~-~~~ 172 (296)
T 3e5z_A 106 A-DSFE-GK---------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-DGTLSAPIR-DRV 172 (296)
T ss_dssp E-CEET-TE---------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-TSCEEEEEC-CCS
T ss_pred e-eccC-CC---------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC-CCCEEEeec-CCC
Confidence 0 0000 00 01234679999999988831 2100 0 0001346777777 477655433 344
Q ss_pred ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 224 MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 224 ~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
....++|+|||+++++.+. ...|..|+. +|.. .....+. .....+..|++++||+++++. ++ .|+
T Consensus 173 ~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~--~~---~v~ 240 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFT-VEPGKTDGLRVDAGGLIWASA--GD---GVH 240 (296)
T ss_dssp SEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEEC-CSSSCCCSEEEBTTSCEEEEE--TT---EEE
T ss_pred CCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEee-CCCCCCCeEEECCCCCEEEEc--CC---eEE
Confidence 5689999999999844443 357888986 4543 1111222 223456789999999987776 44 699
Q ss_pred EEEecCCEEEEEEEEEEecCCcEEEEEc-cCCCceEEEEecC
Q 000992 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWH-PTKPLQLICWTLD 341 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~~~~~~v~Ws-p~~~~~L~~~~~~ 341 (1196)
+|+.... +...+..+.. ...+.|+ |++. +|.+.+.+
T Consensus 241 ~~~~~g~---~~~~~~~~~~-~~~~~f~~~d~~-~L~v~t~~ 277 (296)
T 3e5z_A 241 VLTPDGD---ELGRVLTPQT-TSNLCFGGPEGR-TLYMTVST 277 (296)
T ss_dssp EECTTSC---EEEEEECSSC-CCEEEEESTTSC-EEEEEETT
T ss_pred EECCCCC---EEEEEECCCC-ceeEEEECCCCC-EEEEEcCC
Confidence 9998642 1233433323 5677884 5554 46666643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-09 Score=129.94 Aligned_cols=329 Identities=12% Similarity=0.040 Sum_probs=190.5
Q ss_pred cCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec---cCceeeeeecccccC
Q 000992 85 MEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH---DWDLLYENPLEELAE 160 (1196)
Q Consensus 85 pd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~---~~d~~~~~~l~~~~~ 160 (1196)
|.+..+++...+|+|.+||..++++. .+.. ...+..++|||||++|.+++.|+.|.+++. ....+.++....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--- 240 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--- 240 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---
Confidence 44556677778899999999987653 3332 345779999999999999999999998874 344444443322
Q ss_pred ccccccCccccCCCCeEEEEEc----cCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc----CC-------Cce
Q 000992 161 GFDVHEPELSSSFSFKSPISWR----GDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL----KA-------FMG 225 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWs----pDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~----~~-------~~v 225 (1196)
.-..++|| |||+++. ++.. ..++|.|+|..+++.+.+..- .+ ..+
T Consensus 241 --------------~P~~ia~s~~~~pDGk~l~-v~n~-----~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv 300 (567)
T 1qks_A 241 --------------EARSIETSKMEGWEDKYAI-AGAY-----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV 300 (567)
T ss_dssp --------------EEEEEEECCSTTCTTTEEE-EEEE-----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred --------------CCceeEEccccCCCCCEEE-EEEc-----cCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence 23689999 7999998 6653 358999999989988876431 11 145
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
..+..||++..+...-.+ ...|.+++..... .....+. .......+.|+|||+++.++.... +.|.+||+
T Consensus 301 a~i~~s~~~~~~vv~~~~-----~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~s--n~V~ViD~ 371 (567)
T 1qks_A 301 AAILASHYRPEFIVNVKE-----TGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANAR--NKLVVIDT 371 (567)
T ss_dssp EEEEECSSSSEEEEEETT-----TTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGG--TEEEEEET
T ss_pred EEEEEcCCCCEEEEEecC-----CCeEEEEecCCCccceeeeee--ccccccCceECCCCCEEEEEeCCC--CeEEEEEC
Confidence 788899998765544433 3578777754321 0111121 123467899999999988877533 37999999
Q ss_pred cCCEEEEEEEEEE-ec--C--CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 305 SNNHWYLKYEIRY-LR--R--DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 305 ~n~~wylkq~l~~-~~--~--~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
.+.. +...+.. .. . .+.. .++|++.. +|.+...+.+.+.++|-..-+--.. .|-
T Consensus 372 ~t~k--l~~~i~vgg~~Phpg~g~~-~~~p~~g~----------------v~~t~~~g~~~Vsvid~~~~~~~~~-~~k- 430 (567)
T 1qks_A 372 KEGK--LVAIEDTGGQTPHPGRGAN-FVHPTFGP----------------VWATSHMGDDSVALIGTDPEGHPDN-AWK- 430 (567)
T ss_dssp TTTE--EEEEEECSSSSBCCTTCEE-EEETTTEE----------------EEEEEBSSSSEEEEEECCTTTCTTT-BTS-
T ss_pred CCCc--EEEEEeccCcCCCCcccee-eECCCCCc----------------EEEeCCCCCCeEEEecCCCCCCccc-cCE-
Confidence 9865 3333332 11 0 1111 13555332 2222111223455554321000000 000
Q ss_pred CCCceeeeecCCC-CEEEEEEecCCCCCEEEEEEC-------CCcEEEEeCCCCCccccccCC--ceeeeeec----ccc
Q 000992 380 PPPMYLFSLKFPT-AVTEMAFYSKSSKNCLAAILS-------DGCLCVVDLPAPDMLEDLEGT--EFVVEACI----SET 445 (1196)
Q Consensus 380 pppm~~~~l~~~~-~V~~Vafspdg~~~~lAs~~~-------dg~v~lw~~~~~~~~~~~~g~--~~~~~~~~----~~~ 445 (1196)
-.+++...+ .-..|.++|++ +.|-+... .++|.+++..+... .|. .+.+.+.. ...
T Consensus 431 ----vv~~i~~~g~g~~~i~~~p~~--~~l~v~~~~~~~~~~~~~v~v~d~~~~~~----~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 431 ----ILDSFPALGGGSLFIKTHPNS--QYLYVDATLNPEAEISGSVAVFDIKAMTG----DGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp ----EEEEEECSCSCCCCEECCTTC--SEEEEECTTCSSHHHHTCEEEEEGGGCCC----SSSCCCEEEECHHHHHTCCS
T ss_pred ----EEEEEecCCCCCEEEEeCCCC--CeEEEecCCCCCcccCceEEEEECCcccc----cccCCCcEEeccccccccCC
Confidence 012222221 11346788998 77776552 36999999875310 111 12222100 001
Q ss_pred cCCcEEEEEEecCCeEEEEEec-C--CCCceEEEE
Q 000992 446 AFGSVIHLIWLGSHLLLSVSHH-G--PRHSNYFRG 477 (1196)
Q Consensus 446 ~~~~v~~l~~~~d~~lla~~~~-~--~~~~~~~~~ 477 (1196)
....++|+.|.++|+.+-++.. + .++.+.+++
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 1248999999999976655432 2 235555543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-10 Score=147.60 Aligned_cols=246 Identities=11% Similarity=-0.041 Sum_probs=156.6
Q ss_pred ceeEEeeecCCCEEEEEeC-----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASS-----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+.+.+|.+|+..|.+.++ +..|+.||+ .+++.. . +..+. .....+++|+|||+.|+.++.+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl--~tg~~~-~----~~~~~------~~~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV--DSGEWS-K----VDVIE------GGKYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEET--TTCCBC-S----SCCBS------CCTTCCCEECTTSSEEEEEECC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEEC--CCCCCc-C----CcccC------cccccceEEecCCCEEEEEEec
Confidence 3667899999999887633 357999999 555431 0 00011 1112578999999999999988
Q ss_pred Cc-------------EEEEECCCCe---EEEee--eecCcEEEEEECCCCCEEEEEeCCc----eEEEEeccCceeeeee
Q 000992 97 GL-------------LLLHSVDGNA---TEVVG--RVEGGVRFISPSPDGDLLGVTTGFG----QILVMTHDWDLLYENP 154 (1196)
Q Consensus 97 G~-------------I~lw~~~~~~---~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~----tV~l~~~~~d~~~~~~ 154 (1196)
++ |.+|++.++. ..+.. .+...+.+++|||||++|++++.++ .|.+|+....... .
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~--~ 266 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR--L 266 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE--E
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE--E
Confidence 76 9999998764 22222 1235789999999999999988665 4544432111111 1
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE---EEEeccC-CCceeEEEE
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL---QASSELK-AFMGAVLEW 230 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l---~~~~e~~-~~~v~slaw 230 (1196)
+. .+.+.+....| +||. |...+..+ ..+..|.+||..+|+. .....+. ...+.+++|
T Consensus 267 l~--------------~~~~~~~~~~~-~~g~-l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~ 327 (695)
T 2bkl_A 267 LV--------------KGVGAKYEVHA-WKDR-FYVLTDEG---APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI 327 (695)
T ss_dssp EE--------------ECSSCCEEEEE-ETTE-EEEEECTT---CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE
T ss_pred ee--------------cCCCceEEEEe-cCCc-EEEEECCC---CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE
Confidence 11 12234456667 7777 54133322 2468999999977652 4444333 456788999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~~ 308 (1196)
+ +|.++++...+. ...|.+++.+|..... +..+..+.|..++|||||+.|+...... .-.+|.+|++.+..
T Consensus 328 ~-~~~lv~~~~~dg----~~~l~~~~~~g~~~~~--l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 328 V-GGHLSLEYLKDA----TSEVRVATLKGKPVRT--VQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp E-TTEEEEEEEETT----EEEEEEEETTCCEEEE--CCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred E-CCEEEEEEEECC----EEEEEEEeCCCCeeEE--ecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8 778888887754 2445555666653332 3334355788899999998888655432 11279999987654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-09 Score=119.64 Aligned_cols=224 Identities=10% Similarity=0.126 Sum_probs=148.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.||.+.. .+.|+.|+. .++... . +. . ...+.+++++|+|+. .++. ++.|.
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~--~~~~~~--~------~~-~----~~~~~~i~~~~dG~l-~v~~-~~~l~ 76 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDS--FTKQVQ--R------VT-M----DAPVSSVALRQSGGY-VATI-GTKFC 76 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEET--TTCCEE--E------EE-C----SSCEEEEEEBTTSSE-EEEE-TTEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEEC--CCCcEE--E------Ee-C----CCceEEEEECCCCCE-EEEE-CCeEE
Confidence 5678999999888888854 678999998 444321 1 10 1 247899999999994 4455 56799
Q ss_pred EEECCCCeEEEeeee-----cCcEEEEEECCCCCEEEEEeCC-----------ceEEEEeccCceeeeeecccccCcccc
Q 000992 101 LHSVDGNATEVVGRV-----EGGVRFISPSPDGDLLGVTTGF-----------GQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~-----~~~I~~~awSPDg~~LA~~s~d-----------~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
+||.++++++.+... ...++.++++|||++.+..... +.|..++.+..... ....
T Consensus 77 ~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~------- 147 (297)
T 3g4e_A 77 ALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQ------- 147 (297)
T ss_dssp EEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEE-------
T ss_pred EEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--Eeec-------
Confidence 999998877644322 2358899999999977755322 23333322221110 0000
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC--CCCcEEE-----EeccCCCceeEEEEcCCCCeE
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER--DSGTLQA-----SSELKAFMGAVLEWMPSGANI 237 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~--~~G~l~~-----~~e~~~~~v~slawsPdG~~I 237 (1196)
-.....++|+|||+++. ++. ...+.|.+|+. .+|.+.. ......+....+++.|+|++.
T Consensus 148 --------~~~pngi~~spdg~~ly-v~~-----~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lw 213 (297)
T 3g4e_A 148 --------VDISNGLDWSLDHKIFY-YID-----SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213 (297)
T ss_dssp --------ESBEEEEEECTTSCEEE-EEE-----GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEE
T ss_pred --------cccccceEEcCCCCEEE-Eec-----CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEE
Confidence 01236899999999775 332 13578999985 4776532 222234567899999999987
Q ss_pred EEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccC
Q 000992 238 AAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFE 294 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~ 294 (1196)
++.... ..|..|+.. |.....+.++ ...+.+++|+ ||++.|.+++...
T Consensus 214 va~~~~------~~v~~~d~~tG~~~~~i~~p---~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 214 VACYNG------GRVIRLDPVTGKRLQTVKLP---VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEEETT------TEEEEECTTTCCEEEEEECS---SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred EEEcCC------CEEEEEcCCCceEEEEEECC---CCCceEEEEeCCCCCEEEEEcCCc
Confidence 776542 469999986 8766655443 2468999999 9999888877643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-09 Score=126.07 Aligned_cols=272 Identities=8% Similarity=0.020 Sum_probs=162.2
Q ss_pred EEeeecCCCEEEEEeC----------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE
Q 000992 25 FSALDIEQNRLFFASS----------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT 94 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~----------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as 94 (1196)
.+++++|+..+|+++. ++.|..||. .+.+....+.. +.. .+..+..+..|+++|||+.|.++.
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~--~t~~~~~~i~~-~~~----~~~~g~~p~~i~~spdg~~l~v~n 126 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDA--DKLTFEKEISL-PPK----RVQGLNYDGLFRQTTDGKFIVLQN 126 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEET--TTCCEEEEEEE-CTT----BCCBCCCGGGEEECTTSSEEEEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEEC--cCCcEEEEEEc-Ccc----ccccCCCcceEEECCCCCEEEEEC
Confidence 8899999999999973 456899998 44433212210 000 011124567899999999999887
Q ss_pred C--CCcEEEEECCCCeEE-E-eeeecCcEEEEEECCCC-CEEEEEeCCceEEEEecc--CceeeeeecccccCccccccC
Q 000992 95 S--SGLLLLHSVDGNATE-V-VGRVEGGVRFISPSPDG-DLLGVTTGFGQILVMTHD--WDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 95 ~--dG~I~lw~~~~~~~e-~-vg~~~~~I~~~awSPDg-~~LA~~s~d~tV~l~~~~--~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
. +++|.+||..++++. . +.. .+-..+.+.|+| ..+++.+.||++.+++.. ...... .+...
T Consensus 127 ~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~--~~~~~-------- 194 (361)
T 2oiz_A 127 ASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ--SRSKQ-------- 194 (361)
T ss_dssp ESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE--EECCC--------
T ss_pred CCCCCeEEEEECCCCcEEEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee--ccccc--------
Confidence 4 688999999987653 3 331 233446678887 667778888888777532 222111 00000
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE--EEecc------CCCc----eeEEEEcCCCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ--ASSEL------KAFM----GAVLEWMPSGA 235 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~--~~~e~------~~~~----v~slawsPdG~ 235 (1196)
.|.... .-..+.++|||..++ ..+. ++++.+||...+... ....- ..++ ...++|+|||+
T Consensus 195 ~~~~~~-~~~~~~~~~~g~~~~-~~~~------~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 195 MFSVKD-DPIFIAPALDKDKAH-FVSY------YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp CSCTTT-SCBCSCCEECSSEEE-EEBT------TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eEcCCC-CceEEEecccCCEEE-EEeC------CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 011111 112344578887776 3432 468999998444322 11110 1111 13489999999
Q ss_pred eEEEEec-CCC----CCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE
Q 000992 236 NIAAVYD-RKS----ENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW 309 (1196)
Q Consensus 236 ~IAs~s~-d~~----~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w 309 (1196)
.+..+.. +.. .+....|.+|+.. +.... .++.+ . +.+|+|||||++|+++.. + +|.+||..++.-
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~--~i~~~--~-p~~ia~spdg~~l~v~n~-~---~v~v~D~~t~~l 337 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA--RIPGR--D-ALSMTIDQQRNLMLTLDG-G---NVNVYDISQPEP 337 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE--EEECT--T-CCEEEEETTTTEEEEECS-S---CEEEEECSSSSC
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEE--EEecC--C-eeEEEECCCCCEEEEeCC-C---eEEEEECCCCcc
Confidence 8776643 110 1123579999964 33333 23332 2 889999999999998876 4 799999988611
Q ss_pred EEEEEEEEecCCcEEEEEccCCC
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKP 332 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~ 332 (1196)
.+.+.+.-....+..+.++|+|.
T Consensus 338 ~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 338 KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEEETTSCSSEEEEEECCCSC
T ss_pred eeeEEeccCCCCcEEEEecCCCC
Confidence 12233311112347788999874
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-09 Score=118.85 Aligned_cols=223 Identities=14% Similarity=0.085 Sum_probs=147.2
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.+|.+. .++.|+.|+. .++.. .. +. . ...|.+++|+|||+.++. +.+| |.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~--~~~~~--~~------~~---~--~~~v~~i~~~~dg~l~v~-~~~g-l~ 112 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHL--ASGRK--TV------HA---L--PFMGSALAKISDSKQLIA-SDDG-LF 112 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEET--TTTEE--EE------EE---C--SSCEEEEEEEETTEEEEE-ETTE-EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEEC--CCCcE--EE------EE---C--CCcceEEEEeCCCeEEEE-ECCC-EE
Confidence 456789999988888775 4678999998 44332 11 11 1 246899999999987764 4554 99
Q ss_pred EEECCCCeEEEeeee-----cCcEEEEEECCCCCEEEEEeC------CceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 101 LHSVDGNATEVVGRV-----EGGVRFISPSPDGDLLGVTTG------FGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~-----~~~I~~~awSPDg~~LA~~s~------d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
+||..++++..+... ...+.+++|+|||++.+.... .+.|..++ +... .. +...
T Consensus 113 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~--~~~~----------- 177 (326)
T 2ghs_A 113 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKV-TK--LFAD----------- 177 (326)
T ss_dssp EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEE-EE--EEEE-----------
T ss_pred EEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcE-EE--eeCC-----------
Confidence 999988876543222 135899999999997765542 23444443 2211 11 1000
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CC-cE-----EEEeccCCCceeEEEEcCCCCeEEEEe
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SG-TL-----QASSELKAFMGAVLEWMPSGANIAAVY 241 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G-~l-----~~~~e~~~~~v~slawsPdG~~IAs~s 241 (1196)
......++|+|||+++. ++. ..++.|.+|+.+ +| .+ ........+....+++.++|++.++..
T Consensus 178 ---~~~~~~i~~s~dg~~ly-v~~-----~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~ 248 (326)
T 2ghs_A 178 ---ISIPNSICFSPDGTTGY-FVD-----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW 248 (326)
T ss_dssp ---ESSEEEEEECTTSCEEE-EEE-----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE
T ss_pred ---CcccCCeEEcCCCCEEE-EEE-----CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe
Confidence 01346899999999776 442 135789999974 67 42 222333345668899999999877765
Q ss_pred cCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEccC
Q 000992 242 DRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVRFE 294 (1196)
Q Consensus 242 ~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~d~ 294 (1196)
.. ..|..|+.+|.....+.++ ...+.+++|+ ||++.|.+++...
T Consensus 249 ~~------~~v~~~d~~g~~~~~i~~~---~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 249 GE------GAVDRYDTDGNHIARYEVP---GKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp TT------TEEEEECTTCCEEEEEECS---CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CC------CEEEEECCCCCEEEEEECC---CCCcEEEEEecCCCCEEEEEecCC
Confidence 42 4699999888765554433 2468999998 9999887776554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.8e-10 Score=140.78 Aligned_cols=247 Identities=10% Similarity=-0.004 Sum_probs=155.3
Q ss_pred ceeEEeeecCCCEEEEEeCC-----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASSA-----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~-----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+...+|.+|+..|++++++ ..|+.||+ .+++.. .. .+.+ ..+.+++|||| +.|+.++.+
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl--~tg~~~-~~-----~~~~------~~~~~~~wspD-~~l~~~~~~ 228 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGV--ADGKPL-AD-----ELKW------VKFSGLAWLGN-DALLYSRFA 228 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEET--TTCCEE-EE-----EEEE------EESCCCEESTT-SEEEEEECC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEEC--CCCCCC-Cc-----cCCC------ceeccEEEECC-CEEEEEEec
Confidence 45678999999999888653 35999999 555431 11 0110 12357899999 999999877
Q ss_pred Cc--------------EEEEECCCCe---EEEeeee--cCcEEEEEECCCCCEEEEEeCCc-----eEEEEeccCceee-
Q 000992 97 GL--------------LLLHSVDGNA---TEVVGRV--EGGVRFISPSPDGDLLGVTTGFG-----QILVMTHDWDLLY- 151 (1196)
Q Consensus 97 G~--------------I~lw~~~~~~---~e~vg~~--~~~I~~~awSPDg~~LA~~s~d~-----tV~l~~~~~d~~~- 151 (1196)
+. |.+|++.++. ..+.+.. ...+..++|||||+.|++.+.++ .|.+|+.......
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 229 EPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp CC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred CcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 65 8899987754 2233321 23589999999999999988654 6766653211000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cEEEEeccCCCceeEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TLQASSELKAFMGAVLE 229 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l~~~~e~~~~~v~sla 229 (1196)
...+. .+.+..... |+|||+.|+ +.+-.. ..+..|.+||..++ +.......++..+.+++
T Consensus 309 ~~~l~--------------~~~~~~~~~-~~~dg~~l~-~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~ 370 (741)
T 1yr2_A 309 VTALI--------------PDLKAQWDF-VDGVGDQLW-FVSGDG--APLKKIVRVDLSGSTPRFDTVVPESKDNLESVG 370 (741)
T ss_dssp CEEEE--------------CSSSSCEEE-EEEETTEEE-EEECTT--CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE
T ss_pred cEEec--------------CCCCceEEE-EeccCCEEE-EEECCC--CCCCEEEEEeCCCCccccEEEecCCCCeEEEEE
Confidence 01111 111223344 459999988 444221 23578999999663 44444555555667888
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceEEEEEecCCE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFFSNNH 308 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~~ 308 (1196)
|+ ++.++++...+. ...|.+++.+|..... +..+..+.|..++|||||+.|+...... .-.+|.+|++.+..
T Consensus 371 ~~-~~~lv~~~~~dg----~~~l~~~~~~g~~~~~--l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 371 IA-GNRLFASYIHDA----KSQVLAFDLDGKPAGA--VSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EE-BTEEEEEEEETT----EEEEEEEETTSCEEEE--CBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EE-CCEEEEEEEECC----EEEEEEEeCCCCceee--ccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88 667777777653 2445556666654433 3333456789999999999887554431 11278899887654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.21 E-value=4.2e-09 Score=117.88 Aligned_cols=238 Identities=13% Similarity=0.121 Sum_probs=150.7
Q ss_pred ceeEEeeecCCCEEEEE--------eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC-CCEEEE
Q 000992 22 ILQFSALDIEQNRLFFA--------SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME-KEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~--------s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd-~~~La~ 92 (1196)
.+.+++||+++. +|++ +.++.|+.|+. .+++.. .+. .+.. .+. ...+.+++++|+ |+.+ +
T Consensus 19 ~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~--~~g~~~-~~~-~~~~-~~~----~~~~~~i~~~~~~g~l~-v 87 (314)
T 1pjx_A 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDL--KTGKKT-VIC-KPEV-NGY----GGIPAGCQCDRDANQLF-V 87 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECT--TTCCEE-EEE-CCEE-TTE----ECCEEEEEECSSSSEEE-E
T ss_pred CccCceECCCCC-EEEEEeccccCCCCCCEEEEEeC--CCCcEE-EEE-eccc-CCC----CCCCceEEEecCCCcEE-E
Confidence 567899998775 5555 55778999997 343321 111 0000 001 256899999999 6544 4
Q ss_pred EECCCcEEEEECCCCeEEEe--e----eecCcEEEEEECCCCCEEEEEeCC---------------ceEEEEeccCceee
Q 000992 93 GTSSGLLLLHSVDGNATEVV--G----RVEGGVRFISPSPDGDLLGVTTGF---------------GQILVMTHDWDLLY 151 (1196)
Q Consensus 93 as~dG~I~lw~~~~~~~e~v--g----~~~~~I~~~awSPDg~~LA~~s~d---------------~tV~l~~~~~d~~~ 151 (1196)
++..+.|..||.+ +++..+ . .....+.+++++|||++.++.+.+ +.|..++......
T Consensus 88 ~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~- 165 (314)
T 1pjx_A 88 ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI- 165 (314)
T ss_dssp EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-
T ss_pred EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEE-
Confidence 5555579999998 666543 1 112358899999999988776655 4565554332211
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEc----cCCceEEEeeccccccCCCCEEEEEECC-CCcEE-----EEeccC
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWR----GDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQ-----ASSELK 221 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWs----pDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~-----~~~e~~ 221 (1196)
.. .. +......++|+ |||+++. ++. ..++.|.+|+.. +|++. .....+
T Consensus 166 ~~-~~---------------~~~~~~~i~~~~~~d~dg~~l~-v~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 166 QV-DT---------------AFQFPNGIAVRHMNDGRPYQLI-VAE-----TPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EE-EE---------------EESSEEEEEEEECTTSCEEEEE-EEE-----TTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred Ee-cc---------------CCCCcceEEEecccCCCCCEEE-EEE-----CCCCeEEEEECCCCCccccceEEEECCCC
Confidence 10 00 00234689999 9997655 342 135789999974 56532 222223
Q ss_pred C-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc-CCcce
Q 000992 222 A-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF-EEYDS 298 (1196)
Q Consensus 222 ~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d-~~~~~ 298 (1196)
. +....+++.|+|++.++...+ ..|..|+.+ |.....+.++ ...+.+++|+|||+.|.++... + .
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~------~~i~~~d~~~g~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~---~ 291 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGS------SHIEVFGPDGGQPKMRIRCP---FEKPSNLHFKPQTKTIFVTEHENN---A 291 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETT------TEEEEECTTCBSCSEEEECS---SSCEEEEEECTTSSEEEEEETTTT---E
T ss_pred CCCCCCceEECCCCCEEEEEcCC------CEEEEEcCCCCcEeEEEeCC---CCCceeEEECCCCCEEEEEeCCCC---e
Confidence 2 557889999999988876543 469999987 6554443332 2468999999999967666554 3 5
Q ss_pred EEEEEecC
Q 000992 299 VKICFFSN 306 (1196)
Q Consensus 299 V~lW~~~n 306 (1196)
|..|+...
T Consensus 292 l~~~~~~~ 299 (314)
T 1pjx_A 292 VWKFEWQR 299 (314)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 77777653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-08 Score=105.97 Aligned_cols=267 Identities=12% Similarity=0.009 Sum_probs=173.7
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++|+++. +|+++. ++.|..|+. . +.. ....++ .+...+.++++.|+|...++...+|.|.
T Consensus 16 ~~~~i~~d~~g~-l~v~~~~~~~v~~~d~--~-~~~--~~~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 81 (299)
T 2z2n_A 16 GPYGITVSDKGK-VWITQHKANMISCINL--D-GKI--TEYPLP--------TPDAKVMCLTISSDGEVWFTENAANKIG 81 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--T-CCE--EEEECS--------STTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CccceEECCCCC-EEEEecCCCcEEEEcC--C-CCe--EEecCC--------cccCceeeEEECCCCCEEEeCCCCCeEE
Confidence 688999999887 566654 678999998 4 332 111011 0135799999999999887766688999
Q ss_pred EEECCCCeEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.|+.++ ...... .....+.+++++|||.+.++.+.++.|..++.+... ...... ........
T Consensus 82 ~~~~~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~-~~~~~~--------------~~~~~~~~ 145 (299)
T 2z2n_A 82 RITKKG-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI-REYELP--------------NKGSYPSF 145 (299)
T ss_dssp EECTTS-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEECS--------------STTCCEEE
T ss_pred EECCCC-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE-EEecCC--------------CCCCCCce
Confidence 999874 443222 123568999999999988877777888877543221 111111 11235689
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++.+||..++ +.. ..+.|.+||. +|+.... ..........+++.|+|++.++... ...|..|+.
T Consensus 146 i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~ 211 (299)
T 2z2n_A 146 ITLGSDNALWF-TEN------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII------GNKIGRITT 211 (299)
T ss_dssp EEECTTSCEEE-EET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT
T ss_pred EEEcCCCCEEE-EeC------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC------CceEEEECC
Confidence 99999998877 343 3478999999 8887654 2223345689999999998776543 246888998
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCCCceE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L 335 (1196)
+|... .+.++. ....+..|+++|+|++.++...++ .|..|+.. ... ..+.... ..+..+.+ +++. |
T Consensus 212 ~g~~~-~~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~~-g~~---~~~~~~~~~~~~~~i~~-~~g~--l 279 (299)
T 2z2n_A 212 SGEIT-EFKIPT-PNARPHAITAGAGIDLWFTEWGAN---KIGRLTSN-NII---EEYPIQIKSAEPHGICF-DGET--I 279 (299)
T ss_dssp TCCEE-EEECSS-TTCCEEEEEECSTTCEEEEETTTT---EEEEEETT-TEE---EEEECSSSSCCEEEEEE-CSSC--E
T ss_pred CCcEE-EEECCC-CCCCceeEEECCCCCEEEeccCCc---eEEEECCC-Cce---EEEeCCCCCCccceEEe-cCCC--E
Confidence 76543 233332 234689999999999777664555 69999974 321 1222211 12356666 5553 4
Q ss_pred EEEecCCcE
Q 000992 336 ICWTLDGQI 344 (1196)
Q Consensus 336 ~~~~~~g~~ 344 (1196)
.+.+..+.+
T Consensus 280 ~v~~~~~~l 288 (299)
T 2z2n_A 280 WFAMECDKI 288 (299)
T ss_dssp EEEETTTEE
T ss_pred EEEecCCcE
Confidence 555444444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-10 Score=142.08 Aligned_cols=229 Identities=11% Similarity=0.004 Sum_probs=139.0
Q ss_pred CEEEEEEccCCCEEEEEEC-C----CcEEEEECCCCeEEEeeeecCc-EEEEEECCCCCEEEEEeCCce-----------
Q 000992 77 SITAFDYLMEKEALIVGTS-S----GLLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTGFGQ----------- 139 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~-d----G~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDg~~LA~~s~d~t----------- 139 (1196)
.+.+++|||||+.||.+.. + .+|++||+.|++.... ...+. ...++|| ||+.|+.++.++.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 6888999999999996542 2 4699999999875321 11221 3578999 9999999998743
Q ss_pred --EEEEeccCceeeeeecccccCccccccCcccc-CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cE
Q 000992 140 --ILVMTHDWDLLYENPLEELAEGFDVHEPELSS-SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TL 214 (1196)
Q Consensus 140 --V~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~-~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l 214 (1196)
|.+|...-.......+... .. ++.....++|||||++++ ++.... .....|++||..++ +.
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~-----------~~~~~~~~~~~~~SpDg~~l~-~~~~~~--~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGA-----------IPAQHHRYVGATVTEDDRFLL-ISAANS--TSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESC-----------SGGGCCSEEEEEECTTSCEEE-EEEESS--SSCCEEEEEETTSTTCCC
T ss_pred cEEEEEECCCCcccceEEEec-----------CCCCCeEEEEEEEcCCCCEEE-EEEccC--CCCcEEEEEECCCCCCce
Confidence 5555422111100111111 01 233568899999999997 443221 13468999998655 44
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE---EEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLER---SSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~---~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
..... ........ |+|+|..|+..+... .....|..++.++... ..+ ++ +...+. .|+|+|+.|+...
T Consensus 274 ~~l~~-~~~~~~~~-~~~~g~~l~~~t~~~--~~~~~l~~~d~~~~~~~~~~~l-~~--~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 274 LTVQG-DLDADVSL-VDNKGSTLYLLTNRD--APNRRLVTVDAANPGPAHWRDL-IP--ERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp EEEEC-SSSSCEEE-EEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEE-EC--CCSSCE--EEEEETTEEEEEE
T ss_pred EEEeC-CCCceEEE-EeccCCEEEEEECCC--CCCCEEEEEeCCCCCccccEEE-ec--CCCCEE--EEEEECCEEEEEE
Confidence 44333 33333443 888888777665432 1246788888654221 222 22 222343 9999999998887
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
.+.....|++|+..... .+.+.++.... ..+.|+|++..
T Consensus 345 ~~~g~~~l~~~d~~g~~---~~~l~~p~~~~~~~~~~~~d~~~ 384 (693)
T 3iuj_A 345 MVDATARVEQFDYEGKR---VREVALPGLGSVSGFNGKHDDPA 384 (693)
T ss_dssp EETTEEEEEEECTTSCE---EEEECCSSSSEEEECCCCTTCSC
T ss_pred EECCeeEEEEEECCCCe---eEEeecCCCceEEeeecCCCCCE
Confidence 76544468899887542 23444433222 45667777765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-08 Score=113.17 Aligned_cols=221 Identities=17% Similarity=0.028 Sum_probs=157.3
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV 111 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~ 111 (1196)
++.|++.+.++.|+.||. .+++..|+... . ....+.+++++|+|+.|+ +.++.|..||+++..+-.
T Consensus 5 ~~~lv~~~~~~~v~~~d~--~tG~~~w~~~~-------~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~ 70 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK--DTKEIVWEYPL-------E---KGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWN 70 (276)
T ss_dssp CEEEEECTTCSEEEEEET--TTTEEEEEEEC-------C---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEE
T ss_pred CcEEEeeCCCCEEEEEEC--CCCeEEEEeCC-------C---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEE
Confidence 567777788899999998 66766555431 0 013578999999999888 467889999995544433
Q ss_pred eeee-cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRV-EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~-~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
.... ...+.+++++|||++|++.++ ++.|..++.+++.+.+..+.......+ .....++..+||.+++
T Consensus 71 ~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~----------~~~~~v~~~~~G~~lv 140 (276)
T 3no2_A 71 IAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPH----------AQFRQINKNKKGNYLV 140 (276)
T ss_dssp EECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGG----------GSCSCCEECTTSCEEE
T ss_pred EcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccc----------ccccCceECCCCCEEE
Confidence 3332 246899999999999999988 888887777777666655432110000 1224567899999998
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN 268 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~ 268 (1196)
+.+ .++.|.+||+ +|+.+.+.... +...++...|+|++++++... ..|..|++. |...-++.-.
T Consensus 141 -~~~------~~~~v~~~d~-~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~------~~v~~~d~~tG~~~w~~~~~ 205 (276)
T 3no2_A 141 -PLF------ATSEVREIAP-NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDA------HCFVQLNLESNRIVRRVNAN 205 (276)
T ss_dssp -EET------TTTEEEEECT-TSCEEEEEECS-SCCCEEEECTTSCEEEECBTT------SEEEEECTTTCCEEEEEEGG
T ss_pred -Eec------CCCEEEEECC-CCCEEEEEECC-CCccceeEcCCCCEEEEeCCC------CeEEEEeCcCCcEEEEecCC
Confidence 454 4689999999 59999988643 445778899999999887653 468889987 8776555322
Q ss_pred c-C--CCCcEEEEEEccCCCeeEEEE
Q 000992 269 E-Q--IDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 269 ~-~--~~~~V~~laWSpDg~~LAs~~ 291 (1196)
. + .-..+..++..+||.++++..
T Consensus 206 ~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 206 DIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp GSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCCCccccccccceEcCCCCEEEEec
Confidence 1 1 113478899999999988875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.9e-09 Score=112.69 Aligned_cols=224 Identities=7% Similarity=-0.038 Sum_probs=140.8
Q ss_pred CEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 77 SITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 77 ~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
.+.++++.|+|+..+ +.+.+|.|..|+..++....... ....+.+++++|||+++++.. ++.|..|+..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 789999999999666 43778999999987765443221 124678999999999666555 788988765443322211
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG 234 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG 234 (1196)
.. .......+++.|||++++ +.. .++.|.+|+..++...............+++.|+|
T Consensus 104 ~~---------------~~~~p~~i~~~~~g~l~v-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g 161 (270)
T 1rwi_B 104 FD---------------GLNYPEGLAVDTQGAVYV-ADR------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG 161 (270)
T ss_dssp CC---------------SCSSEEEEEECTTCCEEE-EEG------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC
T ss_pred cC---------------CcCCCcceEECCCCCEEE-EEC------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCC
Confidence 11 113458899999999777 333 24789999874443332222222345889999999
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
++.++.... ..|..|+.+|..... ........+..|+++|||.+.++...++ .|..|+..+... ..
T Consensus 162 ~l~v~~~~~------~~i~~~~~~~~~~~~--~~~~~~~~p~~i~~d~~g~l~v~~~~~~---~v~~~~~~~~~~---~~ 227 (270)
T 1rwi_B 162 NVYVTDTDN------NRVVKLEAESNNQVV--LPFTDITAPWGIAVDEAGTVYVTEHNTN---QVVKLLAGSTTS---TV 227 (270)
T ss_dssp CEEEEEGGG------TEEEEECTTTCCEEE--CCCSSCCSEEEEEECTTCCEEEEETTTS---CEEEECTTCSCC---EE
T ss_pred CEEEEECCC------CEEEEEecCCCceEe--ecccCCCCceEEEECCCCCEEEEECCCC---cEEEEcCCCCcc---ee
Confidence 977776542 468899987754322 1111124688999999997777766555 799999865321 11
Q ss_pred EEEec-CCcEEEEEccCCCceEEEEe
Q 000992 315 IRYLR-RDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 315 l~~~~-~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
+.... ..+..+.++|++. |.+..
T Consensus 228 ~~~~~~~~p~~i~~~~~g~--l~v~~ 251 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRT--VYVAD 251 (270)
T ss_dssp CCCCSCSCEEEEEECTTCC--EEEEE
T ss_pred eccCCCCCceeEEECCCCC--EEEEE
Confidence 11111 1236788888774 44443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-07 Score=108.71 Aligned_cols=295 Identities=8% Similarity=-0.008 Sum_probs=159.0
Q ss_pred EccCCCEEEEEEC--CC---cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEEec-
Q 000992 83 YLMEKEALIVGTS--SG---LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVMTH- 145 (1196)
Q Consensus 83 ~spd~~~La~as~--dG---~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~~~- 145 (1196)
..|+++.+.++.. .+ +|.+||..++++. .+..-..+ .+++||||+.|.++. .+++|.+++.
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 3477776666543 22 7899999887653 22110122 899999999999986 3567877753
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCc
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFM 224 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~ 224 (1196)
...++.++.+.... .+.. ...-..++|+|||++|. ++... ...+|.|+| .+|++..+ .. ..+
T Consensus 106 t~~~~~~i~~~~~~--------~~~~-g~~p~~~~~spDG~~l~-v~n~~----~~~~v~viD-~t~~~~~~~i~-~~~- 168 (373)
T 2mad_H 106 TFLPIADIELPDAP--------RFDV-GPYSWMNANTPNNADLL-FFQFA----AGPAVGLVV-QGGSSDDQLLS-SPT- 168 (373)
T ss_pred CCcEEEEEECCCcc--------cccc-CCCccceEECCCCCEEE-EEecC----CCCeEEEEE-CCCCEEeEEcC-CCc-
Confidence 34444444432000 0000 01124799999999998 65421 247899999 89998877 43 322
Q ss_pred eeEEEEcCCCCe-EEEEecCCCCCCCCeEEEEeCCCeeEEEEEe---ccCCCCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 225 GAVLEWMPSGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDI---NEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 225 v~slawsPdG~~-IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l---~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
++.+.|+|+. .++.+.+ ..+..++.+|........ ............+++++..++..+..+ .|.
T Consensus 169 --~~~~~~~~~~~~~~~~~d------g~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~v~ 237 (373)
T 2mad_H 169 --CYHIHPGAPSTFYLLCAQ------GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSG---KIL 237 (373)
T ss_pred --eEEEEeCCCceEEEEcCC------CCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCc---eEE
Confidence 2444565543 2233332 235555543322211100 000011123466788877666555555 688
Q ss_pred EEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee------cCCCeeEEEEcCCEEEEeec
Q 000992 301 ICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA------VMENSTALVIDGSKILVTPL 374 (1196)
Q Consensus 301 lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~------~~d~~~v~viDg~~l~lt~l 374 (1196)
+.++.+........+...........|.|.+.. .+..+.+|... |+.... ....+.+.|+|..+.++.
T Consensus 238 vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~-~~~~s~d~~~l---yV~~~~~~~~~~~~~~~~V~VID~~t~~vv-- 311 (373)
T 2mad_H 238 QADISAAGATNKAPIDALSGGRKADTWRPGGWQ-QVAYLKSSDGI---YLLTSEQSAWKLHAAAKEVTSVTGLVGQTS-- 311 (373)
T ss_pred EEeccCCcceEeeeeeecCCcccccceecCceE-eEEECCCCCEE---EEEeccCCcccccCCCCeEEEEECCCCEEE--
Confidence 888764322122223221111123455665533 22233333321 111000 011346778887654331
Q ss_pred cccCCCCCceeeeecCCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCCC
Q 000992 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAPD 426 (1196)
Q Consensus 375 ~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~-~lAs~~-~dg~v~lw~~~~~~ 426 (1196)
.++......++++|+||| + .+.++. .+++|.+||..+..
T Consensus 312 -----------~~i~~g~~p~~i~~s~Dg--~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 312 -----------SQISLGHDVDAISVAQDG--GPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred -----------EEEECCCCcCeEEECCCC--CeEEEEEcCCCCeEEEEECCCCC
Confidence 223334457899999999 7 677766 48999999998643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-09 Score=117.32 Aligned_cols=184 Identities=11% Similarity=-0.004 Sum_probs=133.3
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE-Eeeeec-CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE-VVGRVE-GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFD 163 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e-~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~ 163 (1196)
.++.|++++.++.|.+||..++++. ....+. ..+.+++++|||++|+ +.++.|..++++++.+-+.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~------ 75 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPA------ 75 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCT------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCC------
Confidence 4578999999999999999787764 444333 3689999999999998 56778988877666555444321
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc------CCCceeEEEEcCCCCeE
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL------KAFMGAVLEWMPSGANI 237 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~------~~~~v~slawsPdG~~I 237 (1196)
...+.++.+.|||++++ +.+. .+..+..+|+ +|+++..... +......++..|+|++|
T Consensus 76 ---------~~~~~~~~~~~dG~~lv-~~~~-----~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l 139 (276)
T 3no2_A 76 ---------GCEMQTARILPDGNALV-AWCG-----HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYL 139 (276)
T ss_dssp ---------TCEEEEEEECTTSCEEE-EEES-----TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred ---------CccccccEECCCCCEEE-EecC-----CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEE
Confidence 12457889999999998 4441 1467888898 9998876541 11234567899999999
Q ss_pred EEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 238 AAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 238 As~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
++...+ ..|..|+++|...-+|... ..+.++...|+|.+|++...++ .|..++..+
T Consensus 140 v~~~~~------~~v~~~d~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~---~v~~~d~~t 195 (276)
T 3no2_A 140 VPLFAT------SEVREIAPNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGDAH---CFVQLNLES 195 (276)
T ss_dssp EEETTT------TEEEEECTTSCEEEEEECS----SCCCEEEECTTSCEEEECBTTS---EEEEECTTT
T ss_pred EEecCC------CEEEEECCCCCEEEEEECC----CCccceeEcCCCCEEEEeCCCC---eEEEEeCcC
Confidence 987653 5799999999877665432 2456788899999998876665 566666554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.07 E-value=7.7e-08 Score=107.99 Aligned_cols=235 Identities=8% Similarity=-0.036 Sum_probs=143.7
Q ss_pred CEEEEEEccCCC-EEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
..-+..|+|+++ .+++...++.|..|+.++++..... ....+.+++|+|||++++ ++ ++.|.+++..-..+....-
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEe
Confidence 356788999655 4555567889999999988776544 357899999999999555 44 4567776533211111110
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc-----cCCCCEEEEEECCCCcEEEEeccCCCceeEEEE
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEW 230 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-----~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaw 230 (1196)
.... ........+++.|||++++ ....... ....+.|..++. .|++...... -.....++|
T Consensus 91 ~~~~-----------~~~~~~~di~~d~dG~l~~-~~~~~~~~~~~~~~~~~~l~~~d~-~g~~~~~~~~-~~~pngi~~ 156 (297)
T 3g4e_A 91 VDND-----------KKNNRFNDGKVDPAGRYFA-GTMAEETAPAVLERHQGALYSLFP-DHHVKKYFDQ-VDISNGLDW 156 (297)
T ss_dssp CCTT-----------CSSEEEEEEEECTTSCEEE-EEEECCSBTTBCCTTCEEEEEECT-TSCEEEEEEE-ESBEEEEEE
T ss_pred cCCC-----------CCCCCCCCEEECCCCCEEE-ecCCcccccccccCCCcEEEEEEC-CCCEEEEeec-cccccceEE
Confidence 0000 0112457899999999877 3321100 001234555566 5666544332 233478999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeC---CCeeE--EEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYER---NGLER--SSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~---nGl~~--~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+|||+.+..+... ...|..|+. +|... ..| .+. ........+++++||.+.++....+ .|..|+.
T Consensus 157 spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~ 227 (297)
T 3g4e_A 157 SLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDP 227 (297)
T ss_dssp CTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTT---EEEEECT
T ss_pred cCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcC
Confidence 9999977555432 246888873 45432 112 121 1224678999999999888777666 7999998
Q ss_pred cCCEEEEEEEEEEecCCcEEEEEc-cCCCceEEEEec
Q 000992 305 SNNHWYLKYEIRYLRRDGIRFMWH-PTKPLQLICWTL 340 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~~~~~v~Ws-p~~~~~L~~~~~ 340 (1196)
.+.. +...+..+...++++.|. |++. +|.+.+.
T Consensus 228 ~tG~--~~~~i~~p~~~~t~~~f~g~d~~-~L~vt~~ 261 (297)
T 3g4e_A 228 VTGK--RLQTVKLPVDKTTSCCFGGKNYS-EMYVTCA 261 (297)
T ss_dssp TTCC--EEEEEECSSSBEEEEEEESGGGC-EEEEEEB
T ss_pred CCce--EEEEEECCCCCceEEEEeCCCCC-EEEEEcC
Confidence 7554 234555443344888998 6654 4666654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.05 E-value=6.9e-08 Score=107.95 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=145.3
Q ss_pred CCEEEEEEccCCCEEEE-------EECCCcEEEEECCCCeEEEeee-----ecCcEEEEEECCC-CCEEEEEeCCceEEE
Q 000992 76 DSITAFDYLMEKEALIV-------GTSSGLLLLHSVDGNATEVVGR-----VEGGVRFISPSPD-GDLLGVTTGFGQILV 142 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~-------as~dG~I~lw~~~~~~~e~vg~-----~~~~I~~~awSPD-g~~LA~~s~d~tV~l 142 (1196)
..+.+++|.++|+.+++ .+.+|.|..|+..++++..+.. +...+.+++|+|| |++++.... +.|..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEE
Confidence 35789999999987777 5778999999988777653322 4567999999999 776655444 46777
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc---------ccCCCCEEEEEECCCCc
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN---------SSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~---------~~~~d~~irVWd~~~G~ 213 (1196)
|+..... .... ...... .....+..+++.+||++++ +...+. .......|..|+. .|+
T Consensus 97 ~d~~g~~-~~~~-~~~~~~---------~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~ 163 (314)
T 1pjx_A 97 VQTDGTF-EEIA-KKDSEG---------RRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQ 163 (314)
T ss_dssp EETTSCE-EECC-SBCTTS---------CBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECT-TSC
T ss_pred EeCCCCE-EEEE-eccCCC---------ccccCCcCEEECCCCCEEE-EecCcccccccccccccCCCCeEEEECC-CCC
Confidence 7654222 1110 100000 0112457899999999887 343110 0001146778888 477
Q ss_pred EEEEeccCCCceeEEEEc----CCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE--EE-EeccCCC-CcEEEEEEccC
Q 000992 214 LQASSELKAFMGAVLEWM----PSGANIAAVYDRKSENKCPSIVFYER--NGLERS--SF-DINEQID-STVELLKWNCM 283 (1196)
Q Consensus 214 l~~~~e~~~~~v~slaws----PdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~--~f-~l~~~~~-~~V~~laWSpD 283 (1196)
....... ......++|+ |+|+.|..+... ...|..|+. +|.... .+ .++. +. ..+..+++++|
T Consensus 164 ~~~~~~~-~~~~~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 164 MIQVDTA-FQFPNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDED 236 (314)
T ss_dssp EEEEEEE-ESSEEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTT
T ss_pred EEEeccC-CCCcceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCC
Confidence 6554332 2345789999 999766555432 257888874 343211 11 1111 11 45889999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
|.++++...++ .|..|+..+... ...+..+......+.|+|++.. |.+.+
T Consensus 237 G~l~v~~~~~~---~i~~~d~~~g~~--~~~~~~~~~~~~~i~~~~dg~~-l~v~~ 286 (314)
T 1pjx_A 237 NNLLVANWGSS---HIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKT-IFVTE 286 (314)
T ss_dssp CCEEEEEETTT---EEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSE-EEEEE
T ss_pred CCEEEEEcCCC---EEEEEcCCCCcE--eEEEeCCCCCceeEEECCCCCE-EEEEe
Confidence 99988877666 799999874321 1223332233477888888753 55544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-07 Score=102.79 Aligned_cols=234 Identities=9% Similarity=-0.010 Sum_probs=155.1
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++|+++. +|++ ..++.|+.|+. . +. .....++ .+...+.++++.|+|+..++...++.|.
T Consensus 58 ~~~~i~~~~~g~-l~v~~~~~~~i~~~~~--~-g~--~~~~~~~--------~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 123 (299)
T 2z2n_A 58 KVMCLTISSDGE-VWFTENAANKIGRITK--K-GI--IKEYTLP--------NPDSAPYGITEGPNGDIWFTEMNGNRIG 123 (299)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--T-SC--EEEEECS--------STTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred ceeeEEECCCCC-EEEeCCCCCeEEEECC--C-Cc--EEEEeCC--------CcCCCceeeEECCCCCEEEEecCCceEE
Confidence 678899999877 5555 44677999987 3 21 1111111 0135789999999998877777788999
Q ss_pred EEECCCCeEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.|+. +++..... .....+.+++++|||.+.++...++.|..++.+... ....+. ........
T Consensus 124 ~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~--------------~~~~~~~~ 187 (299)
T 2z2n_A 124 RITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDI-TEFKIP--------------TPASGPVG 187 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEECS--------------STTCCEEE
T ss_pred EECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcE-EEeeCC--------------CCCCccee
Confidence 9999 44443221 123568999999999988877777888777653222 111111 11134578
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++.+||++++ +.. ..+.|.+||. +|+..... ......+.++++.|+|++.++... ...|..|+.
T Consensus 188 i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~ 253 (299)
T 2z2n_A 188 ITKGNDDALWF-VEI------IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG------ANKIGRLTS 253 (299)
T ss_dssp EEECTTSSEEE-EET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT------TTEEEEEET
T ss_pred EEECCCCCEEE-Ecc------CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC------CceEEEECC
Confidence 99999999777 342 3478999999 88865532 223455789999999997776533 246999998
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+|.. ..+.++. ....+.++++ ++|++.++...++ |..++..+
T Consensus 254 ~g~~-~~~~~~~-~~~~~~~i~~-~~g~l~v~~~~~~----l~~~~~~~ 295 (299)
T 2z2n_A 254 NNII-EEYPIQI-KSAEPHGICF-DGETIWFAMECDK----IGKLTLIK 295 (299)
T ss_dssp TTEE-EEEECSS-SSCCEEEEEE-CSSCEEEEETTTE----EEEEEEC-
T ss_pred CCce-EEEeCCC-CCCccceEEe-cCCCEEEEecCCc----EEEEEcCc
Confidence 7743 2333332 2346899999 9999887765443 55555443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-08 Score=112.27 Aligned_cols=236 Identities=8% Similarity=0.001 Sum_probs=144.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~ 152 (1196)
++.+.++.+. +++..++...+|.|.+||..++++ ..+.. ......+++||||++.++...++.|.+++. .+.....
T Consensus 43 g~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 43 GDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp BSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred CccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 3567788774 455666666789999999998765 34432 356899999999965555447889988863 3333333
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
+...... +.......+++ .+|+.++ +.. ..+++|.+||..++++..+.... .....++++|
T Consensus 121 i~~g~~~-----------~~~~~p~~i~~-~~~~lyv-~~~-----~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~ 181 (328)
T 3dsm_A 121 IECPDMD-----------MESGSTEQMVQ-YGKYVYV-NCW-----SYQNRILKIDTETDKVVDELTIG-IQPTSLVMDK 181 (328)
T ss_dssp EECTTCC-----------TTTCBCCCEEE-ETTEEEE-EEC-----TTCCEEEEEETTTTEEEEEEECS-SCBCCCEECT
T ss_pred EEcCCcc-----------ccCCCcceEEE-ECCEEEE-EcC-----CCCCEEEEEECCCCeEEEEEEcC-CCccceEEcC
Confidence 3332200 00012245677 4555555 332 12579999999889888776532 2347899999
Q ss_pred CCCeEEEEecCCCCC----CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 233 SGANIAAVYDRKSEN----KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~----~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
+|++.+++..+.... ....|..++.. +.....+.++ .......|+|+||++.|.++.. +|.+||..+.
T Consensus 182 dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~--~g~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~ 254 (328)
T 3dsm_A 182 YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK--LGDWPSEVQLNGTRDTLYWINN-----DIWRMPVEAD 254 (328)
T ss_dssp TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC--TTCCCEEEEECTTSCEEEEESS-----SEEEEETTCS
T ss_pred CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC--CCCCceeEEEecCCCEEEEEcc-----EEEEEECCCC
Confidence 999877765431100 02578889865 4444444332 1235889999999999988654 4889998765
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.......+......+..+.++|++.. |.+..
T Consensus 255 ~~~~~~~~~~~~~~p~gi~vdp~~g~-lyva~ 285 (328)
T 3dsm_A 255 RVPVRPFLEFRDTKYYGLTVNPNNGE-VYVAD 285 (328)
T ss_dssp SCCSSCSBCCCSSCEEEEEECTTTCC-EEEEE
T ss_pred ceeeeeeecCCCCceEEEEEcCCCCe-EEEEc
Confidence 42100001100112367889986654 45543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-08 Score=110.30 Aligned_cols=227 Identities=9% Similarity=0.011 Sum_probs=143.8
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
...+.+||++++.||++. .++.|+.|+. ..+ . .+ +.. +...+.++++.|+|+.++....++.|.
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~--~g~-~--~~------~~~----~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE--DGT-V--DV------LLD----ATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET--TSC-E--EE------EEE----SCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC--CCC-E--EE------EeC----CCCccceeeECCCCCEEEEECCCCEEE
Confidence 567899999999666664 4678999987 222 1 11 111 235789999999999766555567899
Q ss_pred EEECCCCeEE-Eeeee----cCcEEEEEECCCCCEEEE----EeC-------------CceEEEEeccCceeeeeecccc
Q 000992 101 LHSVDGNATE-VVGRV----EGGVRFISPSPDGDLLGV----TTG-------------FGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~----~~~I~~~awSPDg~~LA~----~s~-------------d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
.|+.++ .+. ..... ...+..++++|||.+.++ ++. .+.|..++..-..+.... ..
T Consensus 111 ~~~~~g-~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~ 187 (305)
T 3dr2_A 111 RSDADG-QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DL 187 (305)
T ss_dssp EECTTS-CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EE
T ss_pred EECCCC-CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cC
Confidence 999874 444 32221 234678999999998876 331 234544432111111111 00
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE--Ee-ccCCCceeEEEEcCCCC
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA--SS-ELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~--~~-e~~~~~v~slawsPdG~ 235 (1196)
.....++|+|||++|. ++.........+.|++|+...+.+.. .+ ....+....+++.++|+
T Consensus 188 ---------------~~p~gl~~spdg~~ly-v~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 188 ---------------DHPNGLAFSPDEQTLY-VSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW 251 (305)
T ss_dssp ---------------SSEEEEEECTTSSEEE-EEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC
T ss_pred ---------------CCCcceEEcCCCCEEE-EEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC
Confidence 1336799999999776 44311000013689999985443211 11 11234456899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC
Q 000992 236 NIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
+.++. . ..|..|+.+|...+.+.++ . .+.+++|+||++.|.+++.++
T Consensus 252 lwv~~-~-------~gv~~~~~~g~~~~~~~~~--~--~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 252 LWSSS-G-------TGVCVFDSDGQLLGHIPTP--G--TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEECC-S-------SEEEEECTTSCEEEEEECS--S--CCCEEEECTTSCEEEEEETTE
T ss_pred EEEec-C-------CcEEEECCCCCEEEEEECC--C--ceeEEEEeCCCCEEEEEcCCe
Confidence 76654 2 2499999999877665443 2 478999999999999988765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.00 E-value=8e-07 Score=98.08 Aligned_cols=264 Identities=12% Similarity=0.014 Sum_probs=171.3
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++|+++. ||++. .++.|..++. . ++.. .+ .++. ....+.+|++.++|+..++...++.|.
T Consensus 21 ~p~~i~~d~~g~-l~v~~~~~~~v~~~~~--~-~~~~-~~-~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~v~ 86 (300)
T 2qc5_A 21 GPYGITSSEDGK-VWFTQHKANKISSLDQ--S-GRIK-EF-EVPT--------PDAKVMCLIVSSLGDIWFTENGANKIG 86 (300)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--T-SCEE-EE-ECSS--------TTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CcceeeECCCCC-EEEEcCCCCeEEEECC--C-CceE-EE-ECCC--------CCCcceeEEECCCCCEEEEecCCCeEE
Confidence 678899999876 66665 5678999998 4 3321 11 1111 125799999999998777666678899
Q ss_pred EEECCCCeEEEee--eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 101 LHSVDGNATEVVG--RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 101 lw~~~~~~~e~vg--~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
.||.+ ++..... .....+.+++++|+|++.++...++.|..++..... ....+.. .......
T Consensus 87 ~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-~~~~~~~--------------~~~~~~~ 150 (300)
T 2qc5_A 87 KLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTI-YEYDLPN--------------KGSYPAF 150 (300)
T ss_dssp EECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-EEEECSS--------------TTCCEEE
T ss_pred EECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCE-EEccCCC--------------CCCCcee
Confidence 99988 4444222 123568999999999988877767888877654322 2222110 1134688
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++.+||++++ ... ..+.|.+|+. +|+...... ........+++.|+|++.++... ...|..|+.
T Consensus 151 i~~d~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~ 216 (300)
T 2qc5_A 151 ITLGSDNALWF-TEN------QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM------GNKIGRITT 216 (300)
T ss_dssp EEECTTSSEEE-EET------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT------TTEEEEECT
T ss_pred EEECCCCCEEE-Eec------CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC------CCEEEEEcC
Confidence 99999999776 332 2478999999 888765432 22345689999999998776543 246888998
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCCCceE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L 335 (1196)
+|.... +.++. ....+..|+++++|++.++...++ .|..|+... .. ..+.... ..+..+..++++. |
T Consensus 217 ~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~~g-~~---~~~~~~~~~~~~~~i~~~~~g~--l 285 (300)
T 2qc5_A 217 TGEISE-YDIPT-PNARPHAITAGKNSEIWFTEWGAN---QIGRITNDN-TI---QEYQLQTENAEPHGITFGKDGS--V 285 (300)
T ss_dssp TCCEEE-EECSS-TTCCEEEEEECSTTCEEEEETTTT---EEEEECTTS-CE---EEEECCSTTCCCCCEEECTTSC--E
T ss_pred CCcEEE-EECCC-CCCCceEEEECCCCCEEEeccCCC---eEEEECCCC-cE---EEEECCccCCccceeEeCCCCC--E
Confidence 765432 33332 234688999999999766654445 699998743 22 1222221 1225567777764 4
Q ss_pred EEEec
Q 000992 336 ICWTL 340 (1196)
Q Consensus 336 ~~~~~ 340 (1196)
.+.+.
T Consensus 286 ~v~~~ 290 (300)
T 2qc5_A 286 WFALK 290 (300)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 45443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.4e-08 Score=111.84 Aligned_cols=236 Identities=8% Similarity=-0.039 Sum_probs=145.1
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++++| ++.+|+++. ++.|..||. .+.+.. .+++ ....+..|+++|+++..++...++.|.
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~--~t~~~~---~~i~---------~~~~p~~i~~~~~g~lyv~~~~~~~v~ 108 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDI--NTFKEV---GRIT---------GFTSPRYIHFLSDEKAYVTQIWDYRIF 108 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEET--TTCCEE---EEEE---------CCSSEEEEEEEETTEEEEEEBSCSEEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEEC--cccEEE---EEcC---------CCCCCcEEEEeCCCeEEEEECCCCeEE
Confidence 45666664 678888866 567899998 554431 2211 124789999999995444443789999
Q ss_pred EEECCCCeEE-EeeeecC------cEEEEEECCCCCEEEEEe-CCceEEEEec-cCceeeeeecccccCccccccCcccc
Q 000992 101 LHSVDGNATE-VVGRVEG------GVRFISPSPDGDLLGVTT-GFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSS 171 (1196)
Q Consensus 101 lw~~~~~~~e-~vg~~~~------~I~~~awSPDg~~LA~~s-~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~ 171 (1196)
+||..++++. .+.. .. ....+++ .++++.++.. .+++|.+++. ....+..+....
T Consensus 109 ~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-------------- 172 (328)
T 3dsm_A 109 IINPKTYEITGYIEC-PDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-------------- 172 (328)
T ss_dssp EEETTTTEEEEEEEC-TTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSS--------------
T ss_pred EEECCCCeEEEEEEc-CCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC--------------
Confidence 9999998764 2221 12 4456667 4544444443 3788988763 344433333221
Q ss_pred CCCCeEEEEEccCCceEEEeeccccc----cCCCCEEEEEECCCCcEEEEeccC-CCceeEEEEcCCCCeEEEEecCCCC
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELK-AFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~----~~~d~~irVWd~~~G~l~~~~e~~-~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
....++++|||++++ ++..+.. ......|.+||..++++..+..-. ......++|+|||+.|.++..
T Consensus 173 ---~p~~i~~~~dG~l~v-~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---- 244 (328)
T 3dsm_A 173 ---QPTSLVMDKYNKMWT-ITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---- 244 (328)
T ss_dssp ---CBCCCEECTTSEEEE-EBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS----
T ss_pred ---CccceEEcCCCCEEE-EECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc----
Confidence 125688999999887 4431100 000268999999889887665421 235689999999998877643
Q ss_pred CCCCeEEEEeCCCeeEEEEE-eccCCCCcEEEEEEccC-CCeeEEE----EccCCcceEEEEEec
Q 000992 247 NKCPSIVFYERNGLERSSFD-INEQIDSTVELLKWNCM-SDLLAAV----VRFEEYDSVKICFFS 305 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~-l~~~~~~~V~~laWSpD-g~~LAs~----~~d~~~~~V~lW~~~ 305 (1196)
.|..|+.......... ++. .......++++|+ |.+.++. ..++ +|.+|+..
T Consensus 245 ----~v~~~d~~t~~~~~~~~~~~-~~~~p~gi~vdp~~g~lyva~~~~y~~~~---~V~v~d~~ 301 (328)
T 3dsm_A 245 ----DIWRMPVEADRVPVRPFLEF-RDTKYYGLTVNPNNGEVYVADAIDYQQQG---IVYRYSPQ 301 (328)
T ss_dssp ----SEEEEETTCSSCCSSCSBCC-CSSCEEEEEECTTTCCEEEEECTTSSSEE---EEEEECTT
T ss_pred ----EEEEEECCCCceeeeeeecC-CCCceEEEEEcCCCCeEEEEcccccccCC---EEEEECCC
Confidence 4778886432211000 111 1246889999995 5444444 2334 78888876
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-08 Score=124.24 Aligned_cols=245 Identities=9% Similarity=0.024 Sum_probs=153.1
Q ss_pred ceeEEeeecCCCEEEEEeC-C----CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC
Q 000992 22 ILQFSALDIEQNRLFFASS-A----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d 96 (1196)
.+.+.+|.+|+..|.++.+ . ..|+.+|+ .+++.. .. + +.+ ....+++|+ ||+.|+.++.+
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl--~tg~~~-~~-~----~~~------~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV--ESKQPL-ET-P----LKD------VKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEET--TTCSEE-EE-E----EEE------EESCCCEEE-TTTEEEEEESS
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEEC--CCCCCC-cc-c----cCC------ceeccEEEe-CCCEEEEEEec
Confidence 4667899999998776633 2 36889998 555531 11 0 111 012467899 99999999988
Q ss_pred Cc-------------EEEEECCCCe---EEEeee---ecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCc--eee
Q 000992 97 GL-------------LLLHSVDGNA---TEVVGR---VEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWD--LLY 151 (1196)
Q Consensus 97 G~-------------I~lw~~~~~~---~e~vg~---~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d--~~~ 151 (1196)
+. |.+|++.++. ..+... ++..+..++|||||++|++.+.. +.|.+|+.... ...
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~ 274 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL 274 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE
Confidence 54 9999987743 223222 23457899999999999776532 36666653211 111
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEeccCCCceeEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASSELKAFMGAVLE 229 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~e~~~~~v~sla 229 (1196)
. +. .+.+..... |++||..|+.++..+ .....|.+|+..++.. ...+.++...+. +
T Consensus 275 ~--l~--------------~~~~~~~~~-~~~~g~~l~~~t~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~ 332 (693)
T 3iuj_A 275 T--VQ--------------GDLDADVSL-VDNKGSTLYLLTNRD---APNRRLVTVDAANPGPAHWRDLIPERQQVL--T 332 (693)
T ss_dssp E--EE--------------CSSSSCEEE-EEEETTEEEEEECTT---CTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred E--Ee--------------CCCCceEEE-EeccCCEEEEEECCC---CCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence 1 11 112223343 888888777333322 1347899999966653 123334444333 9
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccC-CcceEEEEEecCCE
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFE-EYDSVKICFFSNNH 308 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~-~~~~V~lW~~~n~~ 308 (1196)
|+|+|+.|+....+.. ...|.+|+.+|..... +..+..+.+..++|+||++.|+....+. .-.+|..|++.+..
T Consensus 333 ~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~--l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 333 VHSGSGYLFAEYMVDA---TARVEQFDYEGKRVRE--VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEETTEEEEEEEETT---EEEEEEECTTSCEEEE--ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEECCEEEEEEEECC---eeEEEEEECCCCeeEE--eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 9999999888776432 3578899988765443 3333445688999999999888876551 11268888776543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-07 Score=106.54 Aligned_cols=240 Identities=10% Similarity=-0.065 Sum_probs=144.5
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
....+..|+|+|+ .+++...+|.|..|+.. +....+....+.+..++|+|||++++...+++.|..|+.+... ....
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~-~~~~ 122 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQA-HLLV 122 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCCCE-EEEE
Confidence 3577899999999 56677778999999985 4455444446779999999999987766667788887654321 1111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEe---ecccc-c------cCCCCEEEEEECCCCcEEEEeccCCCc
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL---SEFCN-S------SKLHKRLKVWERDSGTLQASSELKAFM 224 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv---ss~d~-~------~~~d~~irVWd~~~G~l~~~~e~~~~~ 224 (1196)
... .... ...+..+++.|||++++|- ++... + ....+.|..||..+|++.... . ...
T Consensus 123 -~~~-~~~~---------~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~~~ 189 (305)
T 3dr2_A 123 -GRY-AGKR---------LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-LDH 189 (305)
T ss_dssp -CEE-TTEE---------CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-ESS
T ss_pred -ecc-CCCc---------cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-CCC
Confidence 000 0111 1234679999999988721 21100 0 011356888888678766544 2 234
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE-EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS-FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
...++|+|||+.|..+...........|..|+.++..... ..+..........+++++||.+.++. .++ |.+|+
T Consensus 190 p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~g----v~~~~ 264 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTG----VCVFD 264 (305)
T ss_dssp EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSE----EEEEC
T ss_pred CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCc----EEEEC
Confidence 5789999999977776543100012468888754321111 11111112345679999999965554 443 99999
Q ss_pred ecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 304 FSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
..... ...+..+ .....+.|+|++. .|.+.+.
T Consensus 265 ~~g~~---~~~~~~~-~~~~~~~f~~d~~-~L~it~~ 296 (305)
T 3dr2_A 265 SDGQL---LGHIPTP-GTASNCTFDQAQQ-RLFITGG 296 (305)
T ss_dssp TTSCE---EEEEECS-SCCCEEEECTTSC-EEEEEET
T ss_pred CCCCE---EEEEECC-CceeEEEEeCCCC-EEEEEcC
Confidence 86432 2333332 2346788987665 4666654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-07 Score=106.10 Aligned_cols=204 Identities=8% Similarity=-0.061 Sum_probs=129.2
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCc--eEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG--QILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~--tV~l~~~~~d~~~~~ 153 (1196)
..+..|+|+|+++.+++...++.|+.||.+++.+..+........ ++|+|||+.|.++..++ .|.+++........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~- 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT- 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE-
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE-
Confidence 579999999999987777778999999999887764332222233 99999999999888765 67776643211100
Q ss_pred ecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEE----eccCCCce-e-
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS----SELKAFMG-A- 226 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~----~e~~~~~v-~- 226 (1196)
.+.... . ........++++| +|.+++ +. .+++|+.||..++..... ..+..+.. .
T Consensus 209 ~~g~~~-~---------~~~~~p~~iav~p~~g~lyv--~d------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 209 RIGQLG-S---------TFSGKIGAVALDETEEWLYF--VD------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEEECC-T---------TSCSCCCBCEECTTSSEEEE--EC------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred Eeeecc-c---------hhcCCcEEEEEeCCCCeEEE--EE------CCCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 110000 0 0113457899999 565554 32 357899999966654333 22333333 3
Q ss_pred EEEEcCC-CCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEec-cCC----------CCcEEEEEEccCCCeeEEEE-cc
Q 000992 227 VLEWMPS-GANIAAVYDRKSENKCPSIVFYERNGLERSSFDIN-EQI----------DSTVELLKWNCMSDLLAAVV-RF 293 (1196)
Q Consensus 227 slawsPd-G~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~-~~~----------~~~V~~laWSpDg~~LAs~~-~d 293 (1196)
.++|+|+ |.+.++-+. .+.|..|+.+|......--. ... -.....|+|+|||++.++-. .+
T Consensus 271 ~ia~~p~~g~lyv~d~~------~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~ 344 (409)
T 3hrp_A 271 YLIYYFVDSNFYMSDQN------LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKG 344 (409)
T ss_dssp EEEEETTTTEEEEEETT------TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTT
T ss_pred cEEEeCCCCEEEEEeCC------CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCC
Confidence 9999996 555554333 36799999888633211100 000 13478999999999666654 44
Q ss_pred CCcceEEEEEecCCE
Q 000992 294 EEYDSVKICFFSNNH 308 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~~ 308 (1196)
. .|+.|+..+..
T Consensus 345 ~---~I~~~~~~~G~ 356 (409)
T 3hrp_A 345 Y---CLRKLDILDGY 356 (409)
T ss_dssp C---EEEEEETTTTE
T ss_pred C---EEEEEECCCCE
Confidence 4 89999966554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=5.5e-07 Score=102.63 Aligned_cols=232 Identities=9% Similarity=-0.040 Sum_probs=139.0
Q ss_pred CEEEEEEccCCCE-EEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeec
Q 000992 77 SITAFDYLMEKEA-LIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPL 155 (1196)
Q Consensus 77 ~v~~v~~spd~~~-La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l 155 (1196)
..-+..|+|+++. +.+...+|.|..|+.++++..... ....|.+++|+|||++++.. .++ |.+|+..-..+...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~-- 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLH-- 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEE--
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEE--
Confidence 3567889998654 455567889999999988766443 35679999999999987754 444 76665321111111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGA 235 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~ 235 (1196)
...... .....+..+.|+|||++++ .............|..++ +|++..... .......++|+|||+
T Consensus 125 ~~~~~~---------~~~~~~~~i~~d~~G~l~v-~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~ 191 (326)
T 2ghs_A 125 AELESD---------LPGNRSNDGRMHPSGALWI-GTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGT 191 (326)
T ss_dssp ECSSTT---------CTTEEEEEEEECTTSCEEE-EEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSC
T ss_pred eeCCCC---------CCCCCCCCEEECCCCCEEE-EeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCC
Confidence 110000 0112467899999999777 332110000123455555 566554332 223457899999999
Q ss_pred eEEEEecCCCCCCCCeEEEEeC---CC-eeE--EEE-EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 236 NIAAVYDRKSENKCPSIVFYER---NG-LER--SSF-DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 236 ~IAs~s~d~~~~~~~~V~~~e~---nG-l~~--~~f-~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|..+... ...|..|+. +| ... ..| .+. .....+..+++++||.+.++...++ .|..|+... .
T Consensus 192 ~lyv~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~---~v~~~d~~g-~ 261 (326)
T 2ghs_A 192 TGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEG---AVDRYDTDG-N 261 (326)
T ss_dssp EEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTT---EEEEECTTC-C
T ss_pred EEEEEECC-----CCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCC---EEEEECCCC-C
Confidence 87666442 357888885 46 211 122 122 1224577899999999887766555 699998743 2
Q ss_pred EEEEEEEEEecCCcEEEEEc-cCCCceEEEEe
Q 000992 309 WYLKYEIRYLRRDGIRFMWH-PTKPLQLICWT 339 (1196)
Q Consensus 309 wylkq~l~~~~~~~~~v~Ws-p~~~~~L~~~~ 339 (1196)
+...+..+......+.|+ |++.. |.+.+
T Consensus 262 --~~~~i~~~~~~~~~~af~g~d~~~-L~vt~ 290 (326)
T 2ghs_A 262 --HIARYEVPGKQTTCPAFIGPDASR-LLVTS 290 (326)
T ss_dssp --EEEEEECSCSBEEEEEEESTTSCE-EEEEE
T ss_pred --EEEEEECCCCCcEEEEEecCCCCE-EEEEe
Confidence 223444432234778888 66543 55544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-08 Score=113.72 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=125.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc---ceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA---SIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
.+..+++.+....+++++.++ ++.|+.....+..+ .... + ....+ +| + |..|+| |+..|+++ .+|.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~--~--~~~~~-lp-~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLT--F--KWEKE-IP-D-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCC--C--SEEEE-CT-T-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccccccc--c--eEEee-CC-C-eeEEEE--CCCEEEEE-cCCc
Confidence 688999999999999999887 66698741110000 0000 0 01122 22 3 999999 99999999 8899
Q ss_pred EEEEECCCCe-EEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCe
Q 000992 99 LLLHSVDGNA-TEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 99 I~lw~~~~~~-~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
|++||..+.. ....-.|+.+|.++.|.|.. +|+++.||+|.+|+-. +... .+. ..|
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~---~~~-----------------~~V 165 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTK---QLA-----------------QNV 165 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEE---EEE-----------------ESE
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCccc---ccc-----------------CCc
Confidence 9999987632 23344567789998888763 9999999999998732 2221 111 357
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEe------c---cCCCceeEEEEcCCCCeEEEEec
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASS------E---LKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~------e---~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+++|||+| ++ ++. .++++++|+.+.+++ ..+. + +++..+.+|.|.++++++++-..
T Consensus 166 s~v~WSpkG--~~-vg~------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 166 TSFDVTNSQ--LA-VLL------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EEEEECSSE--EE-EEE------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred eEEEEcCCc--eE-EEE------cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 999999999 45 444 468999999955554 4455 2 36788999999999999987554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-07 Score=123.45 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=141.5
Q ss_pred CcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHH-HHHhcChHHHHhhc--CCcHHHHHHH
Q 000992 917 DPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLM-KKYAQLFPLGLKLI--TDPAKMEQVL 993 (1196)
Q Consensus 917 DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~-~~~~~ly~~AL~L~--~d~~~~~~i~ 993 (1196)
|++....++++|.... ...-+.|...+|+|++|...|.+++. .++|++.+ ... +-|++|.+++ .+. ..++
T Consensus 1036 D~~Rv~eyI~kLd~~d-~~eIA~Iai~lglyEEAf~IYkKa~~--~~~A~~VLie~i-~nldrAiE~Aervn~---p~vW 1108 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDNYD-APDIANIAISNELFEEAFAIFRKFDV--NTSAVQVLIEHI-GNLDRAYEFAERCNE---PAVW 1108 (1630)
T ss_pred ChhhHHHHHHHhhhcc-HHHHHHHHHhCCCHHHHHHHHHHcCC--HHHHHHHHHHHH-hhHHHHHHHHHhcCC---HHHH
Confidence 8888888888887654 23367899999999999999999964 78876555 477 8999999999 332 6788
Q ss_pred HHHHHHHhcccCHHHHHHHHHhCCCH---HHHHHHHHHcCCHHHHHHHH---hhcCC----------------CHHHHH-
Q 000992 994 EAWADHLSDVKCFEDAATTYFCCSSL---EKAMKAYRASGNWSGVLTVA---GLLKL----------------GKDEVA- 1050 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~ag~~---~kAl~~y~~~g~w~~al~la---~~l~~----------------~~~~~~- 1050 (1196)
-.+|..+...++|++|...|++|+++ .+..++|.+.|+|++|+..- +...- .-+++.
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHH
Confidence 89999999999999999999999854 44667777778777776433 21110 001111
Q ss_pred -------HHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhcCCch
Q 000992 1051 -------KLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMHRRED 1107 (1196)
Q Consensus 1051 -------~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~~~~d 1107 (1196)
.-+..+|+.|.+.|+|.+|..+|.. ++++-.+..+|++.+++++|+..+.+-+.++
T Consensus 1189 fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k-A~ny~rLA~tLvkLge~q~AIEaarKA~n~~ 1251 (1630)
T 1xi4_A 1189 FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN-VSNFGRLASTLVHLGEYQAAVDGARKANSTR 1251 (1630)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence 1244689999999999999999999 8999999999999999999998887654443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-06 Score=92.24 Aligned_cols=223 Identities=10% Similarity=-0.035 Sum_probs=148.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~ 153 (1196)
..+.+|++.++|+..++...+|.|..|+.. +++... +.....+.+++++|||.+.++...++.|..++..... ...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~-~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGF-TEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCe-EEe
Confidence 579999999999987776678999999998 555432 2223579999999999988877667888887654322 222
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMP 232 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsP 232 (1196)
.+.. .......+++.++|++++ +.. ..+.|..||. +|+..... .........+++.|
T Consensus 98 ~~~~--------------~~~~~~~i~~~~~g~l~v-~~~------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~ 155 (300)
T 2qc5_A 98 PLPQ--------------PDSGPYGITEGLNGDIWF-TQL------NGDRIGKLTA-DGTIYEYDLPNKGSYPAFITLGS 155 (300)
T ss_dssp ECSS--------------TTCCEEEEEECSTTCEEE-EET------TTTEEEEECT-TSCEEEEECSSTTCCEEEEEECT
T ss_pred cCCC--------------CCCCCccceECCCCCEEE-Ecc------CCCeEEEECC-CCCEEEccCCCCCCCceeEEECC
Confidence 2110 113568899999999887 343 2468999999 58776432 22344578999999
Q ss_pred CCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 233 SGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 233 dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
+|++.++... ...|..|+.+|.... +.++.+ ...+..|+++++|.+.++....+ .|..|+... ..
T Consensus 156 ~g~l~v~~~~------~~~i~~~~~~g~~~~-~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~~g-~~--- 220 (300)
T 2qc5_A 156 DNALWFTENQ------NNSIGRITNTGKLEE-YPLPTN-AAAPVGITSGNDGALWFVEIMGN---KIGRITTTG-EI--- 220 (300)
T ss_dssp TSSEEEEETT------TTEEEEECTTCCEEE-EECSST-TCCEEEEEECTTSSEEEEETTTT---EEEEECTTC-CE---
T ss_pred CCCEEEEecC------CCeEEEECCCCcEEE-eeCCCC-CCCcceEEECCCCCEEEEccCCC---EEEEEcCCC-cE---
Confidence 9997766543 246888888765442 333322 24688999999998777655444 688888732 22
Q ss_pred EEEEEec--CCcEEEEEccCCCceEEEEe
Q 000992 313 YEIRYLR--RDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 313 q~l~~~~--~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
..+.... ..+..+.+++++. |.+.+
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~--l~v~~ 247 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSE--IWFTE 247 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTC--EEEEE
T ss_pred EEEECCCCCCCceEEEECCCCC--EEEec
Confidence 1111111 1236778888764 45544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-07 Score=106.41 Aligned_cols=238 Identities=6% Similarity=-0.110 Sum_probs=146.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--c
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG--L 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~ 98 (1196)
.+.++++|+++. ||++.. ++.|..|+. ..+... .+ ... ..... ++|+|+++.|.++..+| .
T Consensus 132 ~P~~la~d~~g~-lyv~d~~~~~I~~id~--~~g~~~-~~-------~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~ 195 (409)
T 3hrp_A 132 YMWGIAAVGNNT-VLAYQRDDPRVRLISV--DDNKVT-TV-------HPG----FKGGK-PAVTKDKQRVYSIGWEGTHT 195 (409)
T ss_dssp CEEEEEECSTTE-EEEEETTTTEEEEEET--TTTEEE-EE-------EET----CCBCB-CEECTTSSEEEEEBSSTTCE
T ss_pred CceEEEEeCCCC-EEEEecCCCcEEEEEC--CCCEEE-Ee-------ecc----CCCCc-eeEecCCCcEEEEecCCCce
Confidence 678899998877 777754 678999998 444331 11 100 12334 89999999999888766 7
Q ss_pred EEEEECCCCeE-EEee---e-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 99 LLLHSVDGNAT-EVVG---R-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 99 I~lw~~~~~~~-e~vg---~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|..|+..++.. ...| . ....+.+++++|++..|.++..++.|..|+............... +..
T Consensus 196 I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~-----------g~~ 264 (409)
T 3hrp_A 196 VYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS-----------GSL 264 (409)
T ss_dssp EEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC-----------SCC
T ss_pred EEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc-----------CCC
Confidence 88899876532 3332 1 235678999999544455577788888876432211111000000 001
Q ss_pred CCe--EEEEEccC-CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---------------CceeEEEEcCCCC
Q 000992 174 SFK--SPISWRGD-GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA---------------FMGAVLEWMPSGA 235 (1196)
Q Consensus 174 ~~v--~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~---------------~~v~slawsPdG~ 235 (1196)
... ..++|+|+ |.+++ +.+ ..++|++|+. +|..... .+.. .....++|+|+|+
T Consensus 265 ~~~P~~~ia~~p~~g~lyv-~d~------~~~~I~~~~~-~g~~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYM-SDQ------NLSSVYKITP-DGECEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp CCSSCCEEEEETTTTEEEE-EET------TTTEEEEECT-TCCEEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred CCCccccEEEeCCCCEEEE-EeC------CCCEEEEEec-CCCEEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 111 28999995 66555 332 4689999998 7764332 2211 2357899999999
Q ss_pred eEEEEe-cCCCCCCCCeEEEEe-CCCeeEEEEEeccC-----------CCCcEEEEEEccCCCeeEEEEccCCcceEEEE
Q 000992 236 NIAAVY-DRKSENKCPSIVFYE-RNGLERSSFDINEQ-----------IDSTVELLKWNCMSDLLAAVVRFEEYDSVKIC 302 (1196)
Q Consensus 236 ~IAs~s-~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~-----------~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW 302 (1196)
+.++-+ . .+.|+.|+ .+|.......-... .-.....|+++|||.++++-..+. .|+-+
T Consensus 336 lyvad~~~------~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~---~Ir~i 406 (409)
T 3hrp_A 336 FYIVDGFK------GYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGK---AIRKY 406 (409)
T ss_dssp EEEEETTT------TCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTC---EEEEE
T ss_pred EEEEeCCC------CCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCC---eEEEE
Confidence 766644 3 36899999 77754321111000 013588999999998877766555 67766
Q ss_pred Ee
Q 000992 303 FF 304 (1196)
Q Consensus 303 ~~ 304 (1196)
++
T Consensus 407 ~~ 408 (409)
T 3hrp_A 407 AV 408 (409)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-06 Score=97.83 Aligned_cols=262 Identities=6% Similarity=-0.133 Sum_probs=150.1
Q ss_pred eeecCCCEEEEEeC--CC---cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-------
Q 000992 27 ALDIEQNRLFFASS--AN---NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT------- 94 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~--~~---~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as------- 94 (1196)
...+++..+|++.. .. .+..+|. .+++. +.+++.+ ... .+++||||+.|.++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~--~t~~~---~~~i~~g---------~~p-~i~~spDg~~lyv~n~~~~~~~ 91 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDA--GSGSI---LGHVNGG---------FLP-NPVAAHSGSEFALASTSFSRIA 91 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEEC--CCCeE---EEEecCC---------CCC-CeEECCCCCEEEEEeccccccc
Confidence 34578888999864 32 6788888 44443 2333322 234 899999999999886
Q ss_pred ---CCCcEEEEECCCCeEE-E--ee-e--e--cCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeee-eecccccC
Q 000992 95 ---SSGLLLLHSVDGNATE-V--VG-R--V--EGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYE-NPLEELAE 160 (1196)
Q Consensus 95 ---~dG~I~lw~~~~~~~e-~--vg-~--~--~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~-~~l~~~~~ 160 (1196)
.++.|.+||..+.+.. . ++ . . ...-..++|||||++|.++.. +++|.+++..+..+.. +...
T Consensus 92 rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD~t~~~~~~~i~~~---- 167 (373)
T 2mad_H 92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP---- 167 (373)
T ss_pred cCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEECCCCEEeEEcCCC----
Confidence 3678999999875432 1 11 0 0 012357899999999999874 4678776522333322 2211
Q ss_pred ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec------cCCCceeEEEEcCCC
Q 000992 161 GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE------LKAFMGAVLEWMPSG 234 (1196)
Q Consensus 161 ~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e------~~~~~v~slawsPdG 234 (1196)
.++...|+|.......+ .++++.+|+. +|+...... +.........++++|
T Consensus 168 ----------------~~~~~~~~~~~~~~~~~------~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 168 ----------------TCYHIHPGAPSTFYLLC------AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ----------------ceEEEEeCCCceEEEEc------CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC
Confidence 12445566643220122 3577888888 777663321 111122345677877
Q ss_pred CeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEeccC-------CCCcEEEEEEccCCCeeEEEEccC-------Ccc
Q 000992 235 ANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQ-------IDSTVELLKWNCMSDLLAAVVRFE-------EYD 297 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~-------~~~~V~~laWSpDg~~LAs~~~d~-------~~~ 297 (1196)
..++..+.. ..|...+..+.. ...+.+... .......++++|||+.|-++..++ +.+
T Consensus 225 ~~~~~~~~~------~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 225 GRIVWPVYS------GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred CEEEEEcCC------ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 665544432 245555543221 111221100 012244588999999888876532 123
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
.|.+.|..++. ....+... .....+.|+|++...+.+..
T Consensus 299 ~V~VID~~t~~--vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 299 EVTSVTGLVGQ--TSSQISLG-HDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred eEEEEECCCCE--EEEEEECC-CCcCeEEECCCCCeEEEEEc
Confidence 68899988764 23445432 22478999999875565554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-08 Score=114.43 Aligned_cols=178 Identities=12% Similarity=0.071 Sum_probs=122.2
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe---------EE--EeeeecCcEEEEEECCCCCEEEEEeCCceEEE
Q 000992 74 PGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA---------TE--VVGRVEGGVRFISPSPDGDLLGVTTGFGQILV 142 (1196)
Q Consensus 74 ~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~---------~e--~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l 142 (1196)
|...+..+++++....+++|+.+| +++|+.+... .+ ..-.+.+ |..++| ||.+|+++ .++.|.+
T Consensus 36 ~~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 36 PFASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CSSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred CcccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence 345789999999999999999886 5559864311 11 1223566 999999 99999999 7789999
Q ss_pred Ee-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC
Q 000992 143 MT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK 221 (1196)
Q Consensus 143 ~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~ 221 (1196)
|+ +...... ..+ .+...+.++.|.+.. || +.+ .++++.+||..++.+.. +
T Consensus 111 ~dv~sl~~~~--~~~--------------~~~~~v~~i~~~~p~--~a-v~~------~dG~L~v~dl~~~~~~~----~ 161 (388)
T 1xip_A 111 LDLEELSEFR--TVT--------------SFEKPVFQLKNVNNT--LV-ILN------SVNDLSALDLRTKSTKQ----L 161 (388)
T ss_dssp EESSSTTCEE--EEE--------------ECSSCEEEEEECSSE--EE-EEE------TTSEEEEEETTTCCEEE----E
T ss_pred EEchhhhccC--ccc--------------eeecceeeEEecCCC--EE-EEE------CCCCEEEEEccCCcccc----c
Confidence 86 3222111 111 122345677777653 66 343 47999999998787754 3
Q ss_pred CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEec---c---CCCCcEEEEEEccCCCeeEEEEc
Q 000992 222 AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDIN---E---QIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 222 ~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~---~---~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
...+.+++|||+| ++.+..+ ++|+.|...+.. ...+..+ . .+...|.+|.|.+++++|++-..
T Consensus 162 ~~~Vs~v~WSpkG--~~vg~~d------g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 162 AQNVTSFDVTNSQ--LAVLLKD------RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EESEEEEEECSSE--EEEEETT------SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred cCCceEEEEcCCc--eEEEEcC------CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 3468999999999 5666664 468899876654 3333211 1 13567999999999999998665
Q ss_pred c
Q 000992 293 F 293 (1196)
Q Consensus 293 d 293 (1196)
.
T Consensus 234 ~ 234 (388)
T 1xip_A 234 V 234 (388)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-07 Score=106.60 Aligned_cols=296 Identities=8% Similarity=-0.005 Sum_probs=160.4
Q ss_pred EEEEccCCCEEEEEEC-----CCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEE
Q 000992 80 AFDYLMEKEALIVGTS-----SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVM 143 (1196)
Q Consensus 80 ~v~~spd~~~La~as~-----dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~ 143 (1196)
.....||++.+.++.. +++|.++|..++++. .+..-..+ . +++||||++|.+++ .+++|.+|
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3455899999888866 689999999987653 22211233 3 99999999998775 35678888
Q ss_pred e-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 T-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+ ....++.++.+.... .+ .....-..++++|||+++. ++... .++.|.|+|..+++...+..- .
T Consensus 115 D~~t~~v~~~I~v~~g~---r~------~~g~~P~~~a~spDGk~ly-Van~~----~~~~VsVID~~t~~vv~tI~v-~ 179 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAP---RF------LVGTYPWMTSLTPDGKTLL-FYQFS----PAPAVGVVDLEGKAFKRMLDV-P 179 (386)
T ss_dssp CTTTCCEEEEEEETTCC---CC------CBSCCGGGEEECTTSSEEE-EEECS----SSCEEEEEETTTTEEEEEEEC-C
T ss_pred ECCCCeEEEEEECCCcc---cc------ccCCCCceEEEcCCCCEEE-EEEcC----CCCeEEEEECCCCcEEEEEEC-C
Confidence 6 445555555443200 00 0001125699999999887 55421 247899999999998887642 2
Q ss_pred Cc--e------eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEE-EEEEc-cCCCeeEEEEc
Q 000992 223 FM--G------AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVE-LLKWN-CMSDLLAAVVR 292 (1196)
Q Consensus 223 ~~--v------~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~-~laWS-pDg~~LAs~~~ 292 (1196)
+. + .-++.+|||+++....... ..+.. .+. . ........+. ..+|. +||+++. .+.
T Consensus 180 g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~-----g~v~~-~~~----~---~~~~~~~~~~~~~~~~~~dG~~~~-vs~ 245 (386)
T 3sjl_D 180 DCYHIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEI-THT----E---VFHPEDEFLINHPAYSQKAGRLVW-PTY 245 (386)
T ss_dssp SEEEEEEEETTEEEEEETTSCEEEEECCSS-----SCCEE-EEC----C---CCSCTTSCBCSCCEEETTTTEEEE-EBT
T ss_pred CcceeecCCCceeEEECCCCCEEEEECCCC-----CeEEE-eec----c---eeccccccccccceeEcCCCcEEE-EeC
Confidence 21 0 1236667777665554321 12210 100 0 0011111222 35774 7886554 444
Q ss_pred cCCcceEEEEEecCCEEEEEEEEE-EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee--c-CCCeeEEEEcCCE
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIR-YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA--V-MENSTALVIDGSK 368 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~-~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~--~-~d~~~v~viDg~~ 368 (1196)
++ +|.+.|..+..-.....+. |.. ......|.|++.+.+.+ +.++............ . .....++|+|-.+
T Consensus 246 ~g---~V~v~d~~~~~~~v~~~~~~~~~-~~~~~g~~p~g~q~~a~-~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 246 TG---KIHQIDLSSGDAKFLPAVEALTE-AERADGWRPGGWQQVAY-HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp TS---EEEEEECTTSSCEECCCEESSCH-HHHHTTEEECSSSCEEE-ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred CC---EEEEEECCCCcceeecceecccc-ccccccccCCCcceeeE-CCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 55 7888888653211111111 100 00012355655443333 3333321111110000 0 1124577777655
Q ss_pred EEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCC-EEEEE-ECCCcEEEEeCCCCC
Q 000992 369 ILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN-CLAAI-LSDGCLCVVDLPAPD 426 (1196)
Q Consensus 369 l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~-~lAs~-~~dg~v~lw~~~~~~ 426 (1196)
-++. .++.....+++++||||+ + +|.+. ..+++|.++|..+..
T Consensus 321 ~kv~-------------~~i~vg~~~~~lavs~D~--~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 321 GERL-------------AKFEMGHEIDSINVSQDE--KPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CCEE-------------EEEEEEEEECEEEECSSS--SCEEEEEETTTTEEEEEETTTCC
T ss_pred CeEE-------------EEEECCCCcceEEECCCC--CeEEEEEcCCCCeEEEEECCCCc
Confidence 3221 223334467899999999 5 56554 448999999997643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.76 E-value=6.1e-07 Score=116.45 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=118.1
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCC-cHHHHHHHHHHHhcChHHHHhhc------------------------------
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDS-YHADCLNLMKKYAQLFPLGLKLI------------------------------ 983 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~-~~~~ale~~~~~~~ly~~AL~L~------------------------------ 983 (1196)
.+.++.-.-.|+|++|+..|.+++.. .+.+..+...+. +.|++|++.+
T Consensus 1109 sqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1109 SQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTS-GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH
Confidence 44445556678899999888888631 223344444555 5555555444
Q ss_pred ---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000992 984 ---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEEL 1060 (1196)
Q Consensus 984 ---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L 1060 (1196)
.++ .... +..+|+++++.++|++|..+|.++++|.++..+|.+.|++++|+..+++-+ +.+-+ .+.+..+
T Consensus 1188 ~fI~~~-n~ad-~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~-n~~aW----kev~~ac 1260 (1630)
T 1xi4_A 1188 EFINGP-NNAH-IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-STRTW----KEVCFAC 1260 (1630)
T ss_pred HHHhCC-CHHH-HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhC-CHHHH----HHHHHHH
Confidence 111 1122 446999999999999999999999999999999999999999999998864 43333 4556667
Q ss_pred HHcCChHHHHHHHHH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1061 QALGKPGEAAKIALD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1061 ~~~~~~~eAa~i~~~---yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+.|+|..|-.+.+. +.+..++++..|-+.+.|+||+++.++
T Consensus 1261 ve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred hhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778889998888755 124677999999999999999998865
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-06 Score=101.39 Aligned_cols=256 Identities=9% Similarity=0.009 Sum_probs=153.7
Q ss_pred ceeEEeeecCCCEEEEEeC-----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE--
Q 000992 22 ILQFSALDIEQNRLFFASS-----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-- 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-- 94 (1196)
.......++++..+|+.+. ++.+..+|. .+++. +.+++.+ .... +++||||+.|.++.
T Consensus 34 ~~~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~--~t~~v---~~~I~vG---------~~P~-va~spDG~~lyVan~~ 98 (386)
T 3sjl_D 34 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDG--EAGRV---IGMIDGG---------FLPN-PVVADDGSFIAHASTV 98 (386)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEET--TTTEE---EEEEEEC---------SSCE-EEECTTSSCEEEEEEE
T ss_pred cceeeccCCCCCEEEEEcCcccCCCCEEEEEEC--CCCeE---EEEEECC---------CCCc-EEECCCCCEEEEEccc
Confidence 3444566899999999965 567999998 55554 2333333 2333 99999999998876
Q ss_pred --------CCCcEEEEECCCCeEE-Ee--ee-----ecCcEEEEEECCCCCEEEEEeC--CceEEEEe-ccCceeeeeec
Q 000992 95 --------SSGLLLLHSVDGNATE-VV--GR-----VEGGVRFISPSPDGDLLGVTTG--FGQILVMT-HDWDLLYENPL 155 (1196)
Q Consensus 95 --------~dG~I~lw~~~~~~~e-~v--g~-----~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~-~~~d~~~~~~l 155 (1196)
.++.|.+||..+.++. .+ +. ....-..+++||||++|.++.. +++|.+++ ..+..+.++.+
T Consensus 99 ~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 99 FSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence 3678999999987542 22 11 0012346899999999988863 67888876 45555555543
Q ss_pred ccc----c-----------Ccccc--c-c----------CccccCCCCe-EEEEE-ccCCceEEEeeccccccCCCCEEE
Q 000992 156 EEL----A-----------EGFDV--H-E----------PELSSSFSFK-SPISW-RGDGKYFATLSEFCNSSKLHKRLK 205 (1196)
Q Consensus 156 ~~~----~-----------~~~~V--s-~----------tqf~~~~~~v-~~isW-spDG~~lAsvss~d~~~~~d~~ir 205 (1196)
... + +++.+ + . ..|......+ ...+| ++||+++. ++. .+++.
T Consensus 179 ~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~-------~g~V~ 250 (386)
T 3sjl_D 179 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTY-------TGKIH 250 (386)
T ss_dssp CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBT-------TSEEE
T ss_pred CCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeC-------CCEEE
Confidence 110 0 11111 1 0 0111111112 22567 47887544 343 36899
Q ss_pred EEECCCCcEEEEeccC-------------CCceeEEEEcCCCCeEEEEecCC----CCCCCCeEEEEeC-CCeeEEEEEe
Q 000992 206 VWERDSGTLQASSELK-------------AFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYER-NGLERSSFDI 267 (1196)
Q Consensus 206 VWd~~~G~l~~~~e~~-------------~~~v~slawsPdG~~IAs~s~d~----~~~~~~~V~~~e~-nGl~~~~f~l 267 (1196)
+.|..++. .....+. .+....++++|+|+.+..+..+. +......|.++|. .+.....+.+
T Consensus 251 v~d~~~~~-~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v 329 (386)
T 3sjl_D 251 QIDLSSGD-AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 329 (386)
T ss_dssp EEECTTSS-CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEECCCCc-ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC
Confidence 99984332 2211111 12235688899999887764311 1111356888885 4555454433
Q ss_pred ccCCCCcEEEEEEccCCC-eeEEEEc-cCCcceEEEEEecCCE
Q 000992 268 NEQIDSTVELLKWNCMSD-LLAAVVR-FEEYDSVKICFFSNNH 308 (1196)
Q Consensus 268 ~~~~~~~V~~laWSpDg~-~LAs~~~-d~~~~~V~lW~~~n~~ 308 (1196)
. ..+++|++||||+ +|.+... ++ +|-++|..+++
T Consensus 330 g----~~~~~lavs~D~~~~ly~tn~~~~---~VsViD~~t~k 365 (386)
T 3sjl_D 330 G----HEIDSINVSQDEKPLLYALSTGDK---TLYIHDAESGE 365 (386)
T ss_dssp E----EEECEEEECSSSSCEEEEEETTTT---EEEEEETTTCC
T ss_pred C----CCcceEEECCCCCeEEEEEcCCCC---eEEEEECCCCc
Confidence 2 3588999999997 5665543 44 89999998875
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-07 Score=106.93 Aligned_cols=291 Identities=8% Similarity=0.015 Sum_probs=159.4
Q ss_pred cCCCEEEEEECC-----CcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEEe-c
Q 000992 85 MEKEALIVGTSS-----GLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVMT-H 145 (1196)
Q Consensus 85 pd~~~La~as~d-----G~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~~-~ 145 (1196)
|+++.+.++... |+|.++|..++++. -+|. .+ .+++||||++|.++. .+++|.+++ .
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~--~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~ 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF--LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS--SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC--CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence 577777766553 69999999997653 2343 34 799999999998886 366788775 4
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc-
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM- 224 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~- 224 (1196)
...++.++.+.... .|. ....-..++++|||+++. ++... ..++|-|.|..+++...+..- .+.
T Consensus 158 t~~vv~~I~v~g~~--------r~~-~g~~P~~~~~spDGk~ly-V~n~~----~~~~VsVID~~t~kvv~~I~v-~g~~ 222 (426)
T 3c75_H 158 TFLPIADIELPDAP--------RFL-VGTYQWMNALTPDNKNLL-FYQFS----PAPAVGVVDLEGKTFDRMLDV-PDCY 222 (426)
T ss_dssp TCCEEEEEEETTCC--------CCC-BSCCGGGSEECTTSSEEE-EEECS----SSCEEEEEETTTTEEEEEEEC-CSEE
T ss_pred CCcEEEEEECCCcc--------ccc-cCCCcceEEEcCCCCEEE-EEecC----CCCeEEEEECCCCeEEEEEEc-CCce
Confidence 45555555542000 000 001124689999999988 66421 247899999989988877642 211
Q ss_pred -------eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 225 -------GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 225 -------v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
-.-++++|||+++...... ..+..-.. .. +..........+.|++||..++.....+
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~------~~v~~~~~-----~~--~~v~~~p~~~~~~~~~dg~~~~~~s~~g--- 286 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFAD------GETKVTNT-----EV--FHTEDELLINHPAFSLRSGRLVWPTYTG--- 286 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCT------TCCEEEEC-----CC--CSCTTSCBCSCCEECTTTCEEEEEBTTS---
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCC------CcEEEEee-----ee--eccCCCceeeEeeecCCCCEEEEEeCCC---
Confidence 1226677888776655421 12211000 00 1100011122467899999888877665
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCc-EEEEEEEEeee-c--CCCeeEEEEcCCEEEEee
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQ-ITTYNFIWTTA-V--MENSTALVIDGSKILVTP 373 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~-~~~~~~~~~~~-~--~d~~~v~viDg~~l~lt~ 373 (1196)
.|.+.|..+..-.....+...........|.|.+...+ ..+.+|. +++.... ... . .....+.|+|-.+.++.
T Consensus 287 ~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v-a~s~dg~rlyVa~~~-~~~gthk~~s~~VsVID~~T~kvv- 363 (426)
T 3c75_H 287 KIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT-AYHRQSDRIYLLVDQ-RDEWKHKAASRFVVVLNAETGERI- 363 (426)
T ss_dssp EEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE-EEEGGGTEEEEEEEE-CCTTCTTSCEEEEEEEETTTCCEE-
T ss_pred cEEEEeccCCceEEeeeeeeccccccccccccCCceee-EEcCCCCEEEEEecc-cccccccCCCCEEEEEECCCCeEE-
Confidence 78888876432111111111000000112333332211 1222222 1111000 000 0 01246778876553322
Q ss_pred ccccCCCCCceeeeecCCCCEEEEEEecCCCCC-EEEEEE-CCCcEEEEeCCCCCc
Q 000992 374 LSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN-CLAAIL-SDGCLCVVDLPAPDM 427 (1196)
Q Consensus 374 l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~-~lAs~~-~dg~v~lw~~~~~~~ 427 (1196)
.++......+.++|+||| + .+.+.. .+++|.++|..+...
T Consensus 364 ------------~~I~vg~~P~gia~spDg--~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 364 ------------NKIELGHEIDSINVSQDA--EPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp ------------EEEEEEEEECEEEECCSS--SCEEEEEETTTTEEEEEETTTCCE
T ss_pred ------------EEEECCCCcCeEEEccCC--CEEEEEEcCCCCeEEEEECCCCCE
Confidence 122223356899999999 7 888887 589999999986433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-05 Score=89.07 Aligned_cols=230 Identities=6% Similarity=-0.102 Sum_probs=134.8
Q ss_pred CCEEEEEEccCCCEEEEEE--CCCcEEEEECCCCeEEEee-------eecCcEEEEEECCCCCEEEEEeC-----CceEE
Q 000992 76 DSITAFDYLMEKEALIVGT--SSGLLLLHSVDGNATEVVG-------RVEGGVRFISPSPDGDLLGVTTG-----FGQIL 141 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as--~dG~I~lw~~~~~~~e~vg-------~~~~~I~~~awSPDg~~LA~~s~-----d~tV~ 141 (1196)
..+.+|+++|||+.+++.. .+|.+.||..+++++.... .+-..+..++++|||++.++-++ ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 3689999999999988764 3453555554344443211 12357999999999987776655 56888
Q ss_pred EEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCC-ceEEEeeccccccCCCCEEEEEECCCCcEEEEec
Q 000992 142 VMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-KYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE 219 (1196)
Q Consensus 142 l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e 219 (1196)
+|+. ....+....+.... . .+......+++++++ ..++ +.+.. ..+..|.+||..+|+......
T Consensus 97 ~~d~~tg~~~~~~~~~~~~-~---------~~~~~~~~v~vd~~~g~~yv-td~~~---~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPI-T---------LSNSFVNDLAVDLIHNFVYI-SDPAP---DDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EEETTTTEEEEEEECCTTT-S---------CTTCCCCEEEEETTTTEEEE-EECCS---GGGCEEEEEETTTCCEEEECT
T ss_pred EEECCCCeEEEEEECChhh-c---------ccccccceEEEecCCCEEEE-EcCcc---CCCCeEEEEECCCCCEEEEec
Confidence 8763 34434433332110 0 111234789999864 4444 22100 035789999997888777654
Q ss_pred cCC-----------------------------CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC----CCeeE-E--
Q 000992 220 LKA-----------------------------FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER----NGLER-S-- 263 (1196)
Q Consensus 220 ~~~-----------------------------~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~----nGl~~-~-- 263 (1196)
++. .....|+|+|||+.+..+.... ..|.-++. ++... +
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~-----~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS-----TSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC-----SEEEEEEHHHHTCTTCCHHHH
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC-----CeEEEEEHHHhcCCCCChhhh
Confidence 311 1247899999999888876542 24433331 11100 0
Q ss_pred --EEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec--CCcEEEEEccCC
Q 000992 264 --SFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR--RDGIRFMWHPTK 331 (1196)
Q Consensus 264 --~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~--~~~~~v~Wsp~~ 331 (1196)
.+.... .......+++++||.+.++...++ .|..|+..+... ..+...+ ..+..+++++++
T Consensus 238 ~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~---~V~~~d~~~G~~---~~~~~~~~~~~p~~va~~~~g 302 (343)
T 2qe8_A 238 GSKIERYS-EKPICDGISIDKDHNIYVGDLAHS---AIGVITSADRAY---KLLVTDEKLSWTDSFNFGSDG 302 (343)
T ss_dssp HTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGT---EEEEEETTTTEE---EEEEECGGGSCEEEEEECTTS
T ss_pred hcceEecc-cCCCCceEEECCCCCEEEEccCCC---eEEEEECCCCCE---EEEEECCceecCCeeEECCCC
Confidence 000000 012345799999999888877776 899999844432 1222221 123677777765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.3e-05 Score=84.50 Aligned_cols=252 Identities=10% Similarity=0.044 Sum_probs=141.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeecccccccc---------ccCCC-CCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEH---------IDLEP-GDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~-~~~v~~v~~spd~~~La 91 (1196)
.+.+++||+++..+|+...++.|+.|+. ..+... ... .+..... ....+ ...+.+|++.++...|.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~--~~~~~~-~~~-~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEG--PNSGFV-DFA-YASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECC--TTTCEE-EEE-ESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECC--CCCceE-EEe-cccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 4678999999888998888888999987 333221 010 0000000 00000 13689999998333455
Q ss_pred EEECCCcEEEEECCCCeEEEeeee-----cCcEEEEEECC-CCCEEEEEeC-----------------CceEEEEeccCc
Q 000992 92 VGTSSGLLLLHSVDGNATEVVGRV-----EGGVRFISPSP-DGDLLGVTTG-----------------FGQILVMTHDWD 148 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~~e~vg~~-----~~~I~~~awSP-Dg~~LA~~s~-----------------d~tV~l~~~~~d 148 (1196)
++...+.|..++.+++.++.+... -.....+++.| ||.+.++-.. ++.|..++....
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 565555588899887655433211 13478899999 9987766433 245555442211
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC---CcEEEEeccCCCce
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS---GTLQASSELKAFMG 225 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~---G~l~~~~e~~~~~v 225 (1196)
..... .... ..-..|+|+|||+++. ++. ...+.|.+|+... |....... ..+ .
T Consensus 176 ~~~~~-~~~~---------------~~p~gia~~~dg~~ly-v~d-----~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P 231 (322)
T 2fp8_A 176 ETTLL-LKEL---------------HVPGGAEVSADSSFVL-VAE-----FLSHQIVKYWLEGPKKGTAEVLVK-IPN-P 231 (322)
T ss_dssp EEEEE-EEEE---------------SCCCEEEECTTSSEEE-EEE-----GGGTEEEEEESSSTTTTCEEEEEE-CSS-E
T ss_pred EEEEe-ccCC---------------ccCcceEECCCCCEEE-EEe-----CCCCeEEEEECCCCcCCccceEEe-CCC-C
Confidence 11100 0000 1125799999998655 442 1347899998843 22221111 234 6
Q ss_pred eEEEEcCCCCeEEEEecCCCC----CCCCeEEEEeCCCeeEEEEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEE
Q 000992 226 AVLEWMPSGANIAAVYDRKSE----NKCPSIVFYERNGLERSSFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVK 300 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~----~~~~~V~~~e~nGl~~~~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~ 300 (1196)
..+++.|+|++.++....... .....|..++.+|.....+..+... -..+..+++ .+|++..+..... .|.
T Consensus 232 ~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~---~i~ 307 (322)
T 2fp8_A 232 GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG---SVG 307 (322)
T ss_dssp EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS---EEE
T ss_pred CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCC---ceE
Confidence 789999999977665431000 0013577888888776655544211 134666666 4565544443343 577
Q ss_pred EEEec
Q 000992 301 ICFFS 305 (1196)
Q Consensus 301 lW~~~ 305 (1196)
.++..
T Consensus 308 ~~~~~ 312 (322)
T 2fp8_A 308 ILVYD 312 (322)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 77655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.3e-07 Score=107.80 Aligned_cols=232 Identities=13% Similarity=0.084 Sum_probs=104.3
Q ss_pred HHHHHHHhccChhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHH-----
Q 000992 893 AVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMGDSYHADCLN----- 967 (1196)
Q Consensus 893 ~Ly~~ALg~yD~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale----- 967 (1196)
.|.+.+|..-+++-|+..-.++ .||.-|.-- .+.++ .+|+|++|++.|..+-+...+.+++
T Consensus 37 ~La~A~l~~g~~~eAIdsfika-~D~~~y~~V----------~~~ae---~~g~~EeAi~yl~~ark~~~~~~i~~~Li~ 102 (449)
T 1b89_A 37 QLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEV----------VQAAN---TSGNWEELVKYLQMARKKARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcC-CCHHHHHHH----------HHHHH---hCCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 4555555555655543333444 455433211 11222 3899999999776554322233555
Q ss_pred HHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHH
Q 000992 968 LMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047 (1196)
Q Consensus 968 ~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~ 1047 (1196)
++.+. +.|.++.+++..|.. ..+...|+.+.+.|.|++|..+|.++.++.+-.+|+.+.|+|++|+..+++.+ +..
T Consensus 103 ~Y~Kl-g~l~e~e~f~~~pn~--~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~-~~~ 178 (449)
T 1b89_A 103 ALAKT-NRLAELEEFINGPNN--AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-STR 178 (449)
T ss_dssp -------CHHHHTTTTTCC------------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT-CHH
T ss_pred HHHHh-CCHHHHHHHHcCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC-Cch
Confidence 88999 999999999833422 38889999999999999999999999999999999999999999999999875 433
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHh---cCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH-HHHHHHHHHHHH
Q 000992 1048 EVAKLAQELCEELQALGKPGEAAKIALDY---CGDVTNGISLLIDARDWEEALRVAFMHRREDLITK-VKHASLECASSL 1123 (1196)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~~eAa~i~~~y---l~d~~~Ai~~y~~~~~w~eA~rla~~~~~~dL~e~-v~~~l~e~~~~~ 1123 (1196)
.-..+...+...|++..|..+.+.- ..+.++++.+|-+.++|+||+.+.++--..|---. +-..|.-...-.
T Consensus 179 ----~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 179 ----TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 3355677788899999997776552 23456788899999999999988776432221001 222232111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1124 IGEYKEGLEKVGKYLTRYLAVRQRR 1148 (1196)
Q Consensus 1124 ~e~l~~~~~~~~~~~~Rl~~lR~~k 1148 (1196)
..+.+.+-++.|.+|+..=+..|
T Consensus 255 --~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 255 --KPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp --CHHHHHHHHHHHSTTSCHHHHHH
T ss_pred --CHHHHHHHHHHHHHHhcCcHHHH
Confidence 12344555566667765555333
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-05 Score=94.45 Aligned_cols=245 Identities=9% Similarity=0.040 Sum_probs=143.7
Q ss_pred ceeEEeeecCCCEEEEEe----------CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE
Q 000992 22 ILQFSALDIEQNRLFFAS----------SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s----------~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La 91 (1196)
.. .+++++|+..||+++ .++.|..+|. .+.+..-.|. ++.. . .+..+..+..+.|+|||+.|.
T Consensus 120 ~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~--~t~~vv~~I~-v~g~-~--r~~~g~~P~~~~~spDGk~ly 192 (426)
T 3c75_H 120 LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP--VTFLPIADIE-LPDA-P--RFLVGTYQWMNALTPDNKNLL 192 (426)
T ss_dssp SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT--TTCCEEEEEE-ETTC-C--CCCBSCCGGGSEECTTSSEEE
T ss_pred CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC--CCCcEEEEEE-CCCc-c--ccccCCCcceEEEcCCCCEEE
Confidence 45 899999999999997 3556888998 5554422221 1100 0 000123456789999999999
Q ss_pred EEEC--CCcEEEEECCCCeEE-Ee--eee-----cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCc
Q 000992 92 VGTS--SGLLLLHSVDGNATE-VV--GRV-----EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEG 161 (1196)
Q Consensus 92 ~as~--dG~I~lw~~~~~~~e-~v--g~~-----~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~ 161 (1196)
++.. +++|.++|..++++. .+ +.. .+.-..++++|||+++.+...++++.. .. . ..+.. ..
T Consensus 193 V~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~-~~-----~-~~~~v--~~ 263 (426)
T 3c75_H 193 FYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKV-TN-----T-EVFHT--ED 263 (426)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEE-EE-----C-CCCSC--TT
T ss_pred EEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEE-Ee-----e-eeecc--CC
Confidence 9874 578999999987642 21 111 011122567777777766665555431 10 0 00100 01
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------------CCCceeEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVL 228 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------------~~~~v~sl 228 (1196)
.+ ....+.|++||..++ ..+. .+++.+.|...+.. ..... ..+....+
T Consensus 264 ~p-----------~~~~~~~~~dg~~~~-~~s~------~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 264 EL-----------LINHPAFSLRSGRLV-WPTY------TGKIFQADLTAEGA-TFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp SC-----------BCSCCEECTTTCEEE-EEBT------TSEEEEEEECSSCE-EECCCEESSCTTTGGGTEEECSSSCE
T ss_pred Cc-----------eeeEeeecCCCCEEE-EEeC------CCcEEEEeccCCce-EEeeeeeeccccccccccccCCceee
Confidence 11 113467899998777 3432 36888888833332 21111 01112348
Q ss_pred EEcCCCCeEEEEecCCC----CCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC-eeEEEEc-cCCcceEEE
Q 000992 229 EWMPSGANIAAVYDRKS----ENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD-LLAAVVR-FEEYDSVKI 301 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~----~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~-~LAs~~~-d~~~~~V~l 301 (1196)
+++|||+.+..+..+.. ......|.++|.. +.....+.+. ...+.|+|+|||+ .|.+... ++ +|-+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg----~~P~gia~spDg~~~lyv~n~~s~---~VsV 397 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG----HEIDSINVSQDAEPLLYALSAGTQ---TLHI 397 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTT---EEEE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC----CCcCeEEEccCCCEEEEEEcCCCC---eEEE
Confidence 99999997666532110 0112468889864 3333433222 2477999999999 8888774 55 8999
Q ss_pred EEecCCE
Q 000992 302 CFFSNNH 308 (1196)
Q Consensus 302 W~~~n~~ 308 (1196)
+|+.+++
T Consensus 398 ID~~t~k 404 (426)
T 3c75_H 398 YDAATGE 404 (426)
T ss_dssp EETTTCC
T ss_pred EECCCCC
Confidence 9999865
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.8e-06 Score=93.68 Aligned_cols=202 Identities=11% Similarity=0.033 Sum_probs=119.8
Q ss_pred ceeEEeeecCCCEEEEEeC------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEE
Q 000992 22 ILQFSALDIEQNRLFFASS------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGT 94 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as 94 (1196)
.+.++++|+++ .||++.. +..|+.||+ .+++....+ .++... ..+...+.+|++.|++..+ ++-+
T Consensus 68 ~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~--~tg~~~~~~-~~~~~~----~~~~~~~~~v~vd~~~g~~yvtd~ 139 (343)
T 2qe8_A 68 TVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDT--LNNQLSRVI-YLPPPI----TLSNSFVNDLAVDLIHNFVYISDP 139 (343)
T ss_dssp CEEEEEECSSS-EEEEEECHHHHTSCCEEEEEET--TTTEEEEEE-ECCTTT----SCTTCCCCEEEEETTTTEEEEEEC
T ss_pred EeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEEC--CCCeEEEEE-ECChhh----cccccccceEEEecCCCEEEEEcC
Confidence 67889999985 5887753 467999998 444421111 122111 1123567899999875555 4444
Q ss_pred ---CCCcEEEEECCCCeEE-Eeeee-----------------------------cCcEEEEEECCCCCEEEEEeCCceEE
Q 000992 95 ---SSGLLLLHSVDGNATE-VVGRV-----------------------------EGGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 95 ---~dG~I~lw~~~~~~~e-~vg~~-----------------------------~~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
.++.|.+||..+++.. ....| ..++..++|||||++|.++..+++ .
T Consensus 140 ~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~ 218 (343)
T 2qe8_A 140 APDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-S 218 (343)
T ss_dssp CSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-E
T ss_pred ccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-e
Confidence 5789999999876543 22110 134789999999999998877664 3
Q ss_pred EEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-c
Q 000992 142 VMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L 220 (1196)
Q Consensus 142 l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~ 220 (1196)
+|.-+.+.+....+....-...+ ...++......+++++||.+++ +.+ ..+.|.+||..+|++..... +
T Consensus 219 l~~~~~~~~~~~~~~~~~~~~~~---~~~g~~g~pdgia~d~~G~l~v-a~~------~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 219 MYRIKSADLSNLQLTDAELGSKI---ERYSEKPICDGISIDKDHNIYV-GDL------AHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEEEHHHHTCTTCCHHHHHTTC---EEEEECCSCSCEEECTTCCEEE-EEG------GGTEEEEEETTTTEEEEEEECG
T ss_pred EEEEEHHHhcCCCCChhhhhcce---EecccCCCCceEEECCCCCEEE-Ecc------CCCeEEEEECCCCCEEEEEECC
Confidence 33221111100000000000000 0001112235699999999888 443 35799999986787644432 2
Q ss_pred CCCceeEEEEcCCCCeEEEEec
Q 000992 221 KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.-....+++|.|+|+++++...
T Consensus 289 ~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp GGSCEEEEEECTTSCEEEEECC
T ss_pred ceecCCeeEECCCCcEEEEeCc
Confidence 2345689999999998877764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-06 Score=104.71 Aligned_cols=162 Identities=9% Similarity=0.019 Sum_probs=93.6
Q ss_pred CEEEEEEc-cCCCEEEEEEC-CC----cEEEEECCCC-eEEEeeeecCcEEEEEECCCCCEEEEEeCCc-----eEEEEe
Q 000992 77 SITAFDYL-MEKEALIVGTS-SG----LLLLHSVDGN-ATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-----QILVMT 144 (1196)
Q Consensus 77 ~v~~v~~s-pd~~~La~as~-dG----~I~lw~~~~~-~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~-----tV~l~~ 144 (1196)
.+.+.+|| |||+.||.+.. +| +|.++|++++ +.. ..........++|||||+.|+.++.+. .|.++.
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-CccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57889999 99999997654 34 4999999987 521 111122234688999999999987652 344433
Q ss_pred ccCceeeeeecccccCccccccCccc-cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCC--cE--EEEec
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELS-SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSG--TL--QASSE 219 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~-~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G--~l--~~~~e 219 (1196)
.......... | |. ........++|||||++|+ +.+.. .....|.++|..++ +. .....
T Consensus 254 lgt~~~~~~l---------v----~~~~~~~~~~~~~~SpDg~~l~-~~~~~---~~~~~l~~~d~~~~~~~~~~~~l~~ 316 (751)
T 2xe4_A 254 MGKLQSEDVC---------L----YEEHNPLFSAFMYKAADTNTLC-IGSQS---PETAEVHLLDLRKGNAHNTLEIVRP 316 (751)
T ss_dssp TTSCGGGCEE---------E----EECCCTTCEEEEEECTTSSEEE-EEEEC---SSCEEEEEEESSSCTTCCCEEESSC
T ss_pred CCCCchhcEE---------E----EecCCCceEEEEEECCCCCEEE-EEecC---CCCceEEEEECCCCCCCceeEEeec
Confidence 2111000000 0 00 1112357889999999998 44422 23467889998655 33 33333
Q ss_pred cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 220 LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
...+...++.|+. |+.|+..+... ......|..++.+
T Consensus 317 ~~~~~~~s~~~~~-g~~l~~~t~~~-~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 317 REKGVRYDVQMHG-TSHLVILTNEG-GAVNHKLLIAPRG 353 (751)
T ss_dssp CCTTCCEEEEEET-TTEEEEEECTT-TCTTCEEEEEETT
T ss_pred CCCCceEEEeeee-CCEEEEEeCCC-CCCCcEEEEEcCC
Confidence 3344445555543 66665555431 0124567667655
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.3e-05 Score=89.12 Aligned_cols=235 Identities=10% Similarity=0.008 Sum_probs=139.3
Q ss_pred cCCCEEEEEeC-CCcEEEEeccccccccccee-ecc-cccccc-ccCCCCCCEEEEEEccCCCEEEEEECC------CcE
Q 000992 30 IEQNRLFFASS-ANNIYSAQLSSFQNERASIK-TAI-SAEIEH-IDLEPGDSITAFDYLMEKEALIVGTSS------GLL 99 (1196)
Q Consensus 30 ~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~-~~~-~~~l~~-~~~~~~~~v~~v~~spd~~~La~as~d------G~I 99 (1196)
.++..||+.+. ++.|+.+|. .+.....++ .++ |+++.+ .. ......++.+||| .++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~--~t~p~~p~~~k~ie~~~~~~~~g---~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDT--KPNPREPKIIKVIEPEEVKKVSG---YSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEEC--CSCTTSCEEEEEECHHHHHHHHC---EEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEEC--CCCCCCceeeeeechhhcccccC---CCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 78889998766 667999998 333222222 222 122210 00 1257788999999 76666666 789
Q ss_pred EEEECCCCeEE-Ee--eeecCc-EEEEEECCCCCEEEEEe-------------------CCceEEEEec-cCceeeeeec
Q 000992 100 LLHSVDGNATE-VV--GRVEGG-VRFISPSPDGDLLGVTT-------------------GFGQILVMTH-DWDLLYENPL 155 (1196)
Q Consensus 100 ~lw~~~~~~~e-~v--g~~~~~-I~~~awSPDg~~LA~~s-------------------~d~tV~l~~~-~~d~~~~~~l 155 (1196)
.++|..|.++. .. +....+ -..+.|+||++.+.+.. ..++|.+|+. ....+..+.+
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999987653 22 221111 23478999999887774 2578988863 2333333333
Q ss_pred ccccCccccccCccccCCCCeEEEE--EccCCceEEEeecc-ccccCCCCEEEEEECCCCcEEEEe----cc--C-----
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPIS--WRGDGKYFATLSEF-CNSSKLHKRLKVWERDSGTLQASS----EL--K----- 221 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~is--WspDG~~lAsvss~-d~~~~~d~~irVWd~~~G~l~~~~----e~--~----- 221 (1196)
.... ..-..|. |+|||++.- ++.. +.. ...++|-+|..+.|+..... .. .
T Consensus 247 g~~g--------------~~P~~i~f~~~Pdg~~aY-V~~e~~~~-~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp 310 (462)
T 2ece_A 247 GEEN--------------RMALELRPLHDPTKLMGF-INMVVSLK-DLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLP 310 (462)
T ss_dssp CTTE--------------EEEEEEEECSSTTCCEEE-EEEEEETT-TCCEEEEEEEEETTEEEEEEEEEECCEECCSSCC
T ss_pred CCCC--------------CccceeEeeECCCCCEEE-EEEeeecc-CCCceEEEEEecCCceeEEEEEeCCCcccccccc
Confidence 2100 0123444 499999766 5542 000 12467887776556432211 10 0
Q ss_pred ---------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC----CeeEEEEEeccC-----------CCCcEEE
Q 000992 222 ---------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN----GLERSSFDINEQ-----------IDSTVEL 277 (1196)
Q Consensus 222 ---------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n----Gl~~~~f~l~~~-----------~~~~V~~ 277 (1196)
.+....|.+||||++|-++.+. ...|.+|+.. ....+...+.+. ..+.-..
T Consensus 311 ~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg-----~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~ 385 (462)
T 2ece_A 311 EILKPFKAVPPLVTDIDISLDDKFLYLSLWG-----IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM 385 (462)
T ss_dssp GGGGGGTEECCCCCCEEECTTSCEEEEEETT-----TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred ccccccccCCCceeEEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence 2456889999999999988775 3589999853 223333222110 0013468
Q ss_pred EEEccCCCeeEEEE
Q 000992 278 LKWNCMSDLLAAVV 291 (1196)
Q Consensus 278 laWSpDg~~LAs~~ 291 (1196)
+++||||+.|.++.
T Consensus 386 ~~lSpDGk~LyVaN 399 (462)
T 2ece_A 386 LEISRDGRRVYVTN 399 (462)
T ss_dssp EEECTTSSEEEEEC
T ss_pred EEEcCCCCEEEEEc
Confidence 99999999999886
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-05 Score=81.74 Aligned_cols=100 Identities=10% Similarity=0.006 Sum_probs=71.5
Q ss_pred ccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHH
Q 000992 1003 VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDVTN 1082 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~ 1082 (1196)
...|+.=+....+.|+++-|.+||.++|++..++-+....+ +.+ -+..+++.-...|++.-|..+++. +||+++
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg-~~e----~L~kla~iA~~~g~~n~af~~~l~-lGdv~~ 107 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTG-DVN----KLSKMQNIAQTREDFGSMLLNTFY-NNSTKE 107 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHT-CHH----HHHHHHHHHHHTTCHHHHHHHHHH-HTCHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhC-CHH----HHHHHHHHHHHCccHHHHHHHHHH-cCCHHH
Confidence 33444444555555666666666666666666655544433 332 234566666778999999999888 999999
Q ss_pred HHHHHHHhcCHHHHHHHHHhcCCchh
Q 000992 1083 GISLLIDARDWEEALRVAFMHRREDL 1108 (1196)
Q Consensus 1083 Ai~~y~~~~~w~eA~rla~~~~~~dL 1108 (1196)
++++|++.++|.+|...|+.|...++
T Consensus 108 ~i~lL~~~~r~~eA~~~A~t~g~~~~ 133 (177)
T 3mkq_B 108 RSSIFAEGGSLPLAYAVAKANGDEAA 133 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCChHHHHHHHHHcCcHHH
Confidence 99999999999999999999985443
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.029 Score=71.48 Aligned_cols=366 Identities=9% Similarity=-0.017 Sum_probs=204.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++..|.++ .|++++.+++++.++. .++... ... ........++...|.++...++|.. .+|+.+| |.+
T Consensus 216 ~i~~i~~d~~g-~lwigt~~~Gl~~~~~--~~~~~~-~~~---~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~G-l~~ 286 (795)
T 4a2l_A 216 QIQAILQQSPT-RIWVATEGAGLFLINP--KTKEIK-NYL---HSPSNPKSISSNYIRSLAMDSQNRL-WIGTFND-LNI 286 (795)
T ss_dssp CEEEEEEEETT-EEEEEEBSSCEEEEET--TTTEEE-EEC---CCTTCTTSCSCSBEEEEEECTTSCE-EEEESSC-EEE
T ss_pred eeEEEEEcCCC-CEEEEECCCCeEEEeC--CCCeEE-Eee---cCCCCccccCCCeEEEEEEcCCCCE-EEEeCCh-hhe
Confidence 56677778754 5888887666999998 443321 111 0000001123467999999888864 4566665 888
Q ss_pred EECCCCeEEEeee--------ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 102 HSVDGNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 102 w~~~~~~~e~vg~--------~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
|+..++.+..... ....|.++...++|.+- +||.++-|..++............... .. -..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~--~~-------l~~ 356 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYK--NS-------LSD 356 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTS--SS-------CSC
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCC--CC-------CCC
Confidence 9998887764321 23569999999998765 466666677665332222111110000 00 023
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--------CCCceeEEEEcCCCCeEEEEecCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--------KAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--------~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
+.|.++...++|.+.+ ++ .++-|..|+..++........ ....|.++...++|++|-.|+.+
T Consensus 357 ~~V~~i~~d~~g~lWi--Gt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~-- 426 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWI--GT------NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHA-- 426 (795)
T ss_dssp SSEEEEEECTTSCEEE--EE------SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETT--
T ss_pred CeeEEEEECCCCCEEE--EE------CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCc--
Confidence 4688999999998776 43 234578889867766544311 13467899999999933334442
Q ss_pred CCCCCeEEEEeCCCeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEE----EEec
Q 000992 246 ENKCPSIVFYERNGLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEI----RYLR 319 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l----~~~~ 319 (1196)
..|..|+.++.....+.... .....|.++...++|.+.+... .+ +.+|+..+..+...... ....
T Consensus 427 ----~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G----l~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 427 ----GGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA----LVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp ----TEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC----EEEEETTTTEEEECCBCTTCCBCCC
T ss_pred ----CceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc----eeEEeCCCCeEEEccccccccccCC
Confidence 35888886543322222111 1135699999999998777654 55 88999877654211000 0001
Q ss_pred CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEE
Q 000992 320 RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAF 399 (1196)
Q Consensus 320 ~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vaf 399 (1196)
.....+..++++. |.+++.+| +..++ . ++..+.+.... ..+.+ ....|.++..
T Consensus 498 ~~i~~i~~d~~g~--lWigt~~G-l~~~~----~-----------~~~~~~~~~~~---~~~~l------~~~~i~~i~~ 550 (795)
T 4a2l_A 498 KQITTLFRDSHKR--LWIGGEEG-LSVFK----Q-----------EGLDIQKASIL---PVSNV------TKLFTNCIYE 550 (795)
T ss_dssp CCEEEEEECTTCC--EEEEESSC-EEEEE----E-----------ETTEEEECCCS---CSCGG------GGSCEEEEEE
T ss_pred ceEEEEEECCCCC--EEEEeCCc-eEEEe----C-----------CCCeEEEecCC---CCCCC------CCCeeEEEEE
Confidence 1225566666654 56666533 33222 1 11222111100 00111 2356899999
Q ss_pred ecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEE
Q 000992 400 YSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVS 465 (1196)
Q Consensus 400 spdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~ 465 (1196)
.++| + |-+++.+ -|..|+..+. .+...........+.+..+...++|.+.+..
T Consensus 551 d~~g--~-lWigT~~-Gl~~~d~~~~---------~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 551 ASNG--I-IWVGTRE-GFYCFNEKDK---------QIKRYNTTNGLPNNVVYGILEDSFGRLWLST 603 (795)
T ss_dssp CTTS--C-EEEEESS-CEEEEETTTT---------EEEEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred CCCC--C-EEEEeCC-CceeECCCCC---------cEEEeCCCCCCchhheEEEEECCCCCEEEEc
Confidence 9988 4 5555555 6777886542 1111000001123468888888888876554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.001 Score=72.76 Aligned_cols=219 Identities=11% Similarity=0.004 Sum_probs=130.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||++++.||++.. .+.|+.++. ..+... .+ ++.+ ...+.++++.|++..|.++ ..++.|
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~--~g~~~~-~~--~~~~--------~~~p~~ia~d~~~~~lyv~d~~~~~I 103 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASL--HGGEPT-TI--IRQD--------LGSPEGIALDHLGRTIFWTDSQLDRI 103 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEES--SSCCCE-EE--ECTT--------CCCEEEEEEETTTTEEEEEETTTTEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEec--CCCCcE-EE--EECC--------CCCccEEEEEecCCeEEEEECCCCEE
Confidence 5678999999999999865 567999988 333221 11 1111 1478999999987666655 456789
Q ss_pred EEEECCCCeEEEeeeec-CcEEEEEECCCCCEEEEEeC---CceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 100 LLHSVDGNATEVVGRVE-GGVRFISPSPDGDLLGVTTG---FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~~~-~~I~~~awSPDg~~LA~~s~---d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
..++.++.....+.... ..-..++++|++..|-.+.. .+.|..++.+....... .... -..
T Consensus 104 ~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~--~~~~-------------~~~ 168 (267)
T 1npe_A 104 EVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL--AQDN-------------LGL 168 (267)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE--ECTT-------------CSC
T ss_pred EEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE--EECC-------------CCC
Confidence 99999875433222111 45789999998776655543 35676655443322111 0000 013
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
-..++|+|||.+|- ++. ...+.|.+++. .|... ...... .....++ +++..|..+... ...|..
T Consensus 169 P~gia~d~~~~~ly-v~d-----~~~~~I~~~~~-~g~~~~~~~~~~-~~P~gi~--~d~~~lyva~~~-----~~~v~~ 233 (267)
T 1npe_A 169 PNGLTFDAFSSQLC-WVD-----AGTHRAECLNP-AQPGRRKVLEGL-QYPFAVT--SYGKNLYYTDWK-----TNSVIA 233 (267)
T ss_dssp EEEEEEETTTTEEE-EEE-----TTTTEEEEEET-TEEEEEEEEECC-CSEEEEE--EETTEEEEEETT-----TTEEEE
T ss_pred CcEEEEcCCCCEEE-EEE-----CCCCEEEEEec-CCCceEEEecCC-CCceEEE--EeCCEEEEEECC-----CCeEEE
Confidence 47899999987654 343 13578999999 55333 332322 2224555 456666655543 357888
Q ss_pred EeCC-CeeEEEEEeccCCCCcEEEEEEccCCC
Q 000992 255 YERN-GLERSSFDINEQIDSTVELLKWNCMSD 285 (1196)
Q Consensus 255 ~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~ 285 (1196)
++.+ |.....+ +.........|+++||+-
T Consensus 234 ~d~~~g~~~~~i--~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTF--HPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEE--CCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEE--ccccccccceeeecCccC
Confidence 8875 6554433 211112366788888874
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00034 Score=82.28 Aligned_cols=211 Identities=17% Similarity=0.152 Sum_probs=129.2
Q ss_pred cCCCEEEE-EECCCcEEEEECCCC--eEEEeeeec----------CcEEEEEECCCCCEEEEEeCC------ceEEEEe-
Q 000992 85 MEKEALIV-GTSSGLLLLHSVDGN--ATEVVGRVE----------GGVRFISPSPDGDLLGVTTGF------GQILVMT- 144 (1196)
Q Consensus 85 pd~~~La~-as~dG~I~lw~~~~~--~~e~vg~~~----------~~I~~~awSPDg~~LA~~s~d------~tV~l~~- 144 (1196)
++.+.|.+ +..+++|.++|..+. +.+++..++ ..-..+..+||| +.+++.++ +.|.+++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 88888765 556788999998653 223222221 123456789999 77777666 6788887
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc----------ccc---CCCCEEEEEECCC
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC----------NSS---KLHKRLKVWERDS 211 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d----------~~~---~~d~~irVWd~~~ 211 (1196)
..++++......... ...-..+.|+||++.+. ++.+. ++. ....+|.+||..+
T Consensus 172 ~T~~v~~~~~~~~~~-------------~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~ 237 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD-------------QYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK 237 (462)
T ss_dssp TTCCEEEECCSBCTT-------------CCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT
T ss_pred CCCeEEEEEccCCCC-------------ccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCC
Confidence 447776655433211 01124689999999888 45311 000 1257999999988
Q ss_pred CcEEEEeccC-CC-ceeEEEE--cCCCCeEEEEec-----CCCCCCCCeEEEEeCC-CeeEEE--EEeccC---C-----
Q 000992 212 GTLQASSELK-AF-MGAVLEW--MPSGANIAAVYD-----RKSENKCPSIVFYERN-GLERSS--FDINEQ---I----- 271 (1196)
Q Consensus 212 G~l~~~~e~~-~~-~v~slaw--sPdG~~IAs~s~-----d~~~~~~~~V~~~e~n-Gl~~~~--f~l~~~---~----- 271 (1196)
+++..+..-. .+ ....|.| +|+|++.-.+.. . ..+|..|..+ |....+ +.++.. .
T Consensus 238 ~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~L-----ss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 238 RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDL-----SSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTC-----CEEEEEEEEETTEEEEEEEEEECCEECCSSCCGG
T ss_pred CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCC-----CceEEEEEecCCceeEEEEEeCCCcccccccccc
Confidence 8888776532 21 2244545 999998877765 4 2466665543 322111 112210 0
Q ss_pred -------CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-CEEEEEEEEEE
Q 000992 272 -------DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-NHWYLKYEIRY 317 (1196)
Q Consensus 272 -------~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-~~wylkq~l~~ 317 (1196)
......|.+||||+.|-++.... +.|.++++.+ .+..+.+.+..
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTTSCEEEEEEEC
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCCCcEEEEEEEe
Confidence 13467899999999999987754 4899999853 23334444443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00034 Score=76.68 Aligned_cols=193 Identities=15% Similarity=0.077 Sum_probs=126.6
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEE
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVM 143 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~ 143 (1196)
+.++|..+......+.|+ ++....+.+.+| .|+.+|+.++++...-..+.........++|+.|-.++. ++.+.++
T Consensus 34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 445556556678899999 777667777776 899999999876421123445555555667777777764 6677777
Q ss_pred e-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 T-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+ .++..+.++...... +.++ +||+.|. ++. +..+|.++|+.+.+...+.+-..
T Consensus 113 D~~t~~~~~ti~~~~eG-----------------~glt--~dg~~L~-~Sd------Gs~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 113 NIRNLRQVRSFNYDGEG-----------------WGLT--HNDQYLI-MSD------GTPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp ETTTCCEEEEEECSSCC-----------------CCEE--ECSSCEE-ECC------SSSEEEEECTTTCSEEEEEECEE
T ss_pred ECccCcEEEEEECCCCc-----------------eEEe--cCCCEEE-EEC------CCCeEEEEcCCCCeEEEEEEecc
Confidence 6 456666666553321 3444 5777777 553 35789999998888887754211
Q ss_pred -----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEecc---------CCCCcEEEEEEccCCCee
Q 000992 223 -----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINE---------QIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 223 -----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~---------~~~~~V~~laWSpDg~~L 287 (1196)
...+.+.|. +|++.|..-. ...|...| .+|...+.+.+.. +.....+.|||+|+++.|
T Consensus 167 ~g~~~~~lNELe~~-~G~lyan~w~------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 167 HGEELPELNELEWV-DGEIFANVWQ------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETT------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred CCccccccceeEEE-CCEEEEEEcc------CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 223457887 8876665533 24677777 4677666665531 112346889999999988
Q ss_pred EEEEcc
Q 000992 288 AAVVRF 293 (1196)
Q Consensus 288 As~~~d 293 (1196)
-+.+..
T Consensus 240 fVTGK~ 245 (262)
T 3nol_A 240 FVTGKL 245 (262)
T ss_dssp EEEETT
T ss_pred EEECCC
Confidence 887643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.6e-05 Score=95.02 Aligned_cols=169 Identities=9% Similarity=0.049 Sum_probs=91.4
Q ss_pred cEEEEEEC-CCCCEEEEEeCC-c----eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 118 GVRFISPS-PDGDLLGVTTGF-G----QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 118 ~I~~~awS-PDg~~LA~~s~d-~----tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
.+.+.+|| |||++||.+... | +|.+++.... . ..+. . .+ ......++|+|||+.|+ .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g--~-~~l~-~----~~--------~~~~~~~~WspDg~~l~-y 237 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDP--S-QTIA-D----KV--------SGTNGEIVWGPDHTSLF-Y 237 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCT--T-CCCC-C----CE--------EEECSCCEECSSTTEEE-E
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCC--C-EeCC-c----cc--------cCceeeEEEecCCCEEE-E
Confidence 57889999 999999987532 2 4666653211 0 0000 0 00 01124689999999888 4
Q ss_pred eccccccCCCCEEEEEECCCCcE--EEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE---
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTL--QASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF--- 265 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l--~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f--- 265 (1196)
+..+.. .....|.+++..+++. ..+.+ +......+++|||||++|+..+.... ...|.+++.++.. +++
T Consensus 238 ~~~d~~-~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~---~~~l~~~d~~~~~-~~~~~~ 312 (751)
T 2xe4_A 238 VTKDET-LRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPE---TAEVHLLDLRKGN-AHNTLE 312 (751)
T ss_dssp EEECTT-CCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSS---CEEEEEEESSSCT-TCCCEE
T ss_pred EEECCC-CCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCC---CceEEEEECCCCC-CCceeE
Confidence 443311 1113688888866541 12222 33345678899999999988775432 4567777765421 011
Q ss_pred EeccCCCCcEEEEEEccCCCeeEEEEccC--CcceEEEEEecC-CEE
Q 000992 266 DINEQIDSTVELLKWNCMSDLLAAVVRFE--EYDSVKICFFSN-NHW 309 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LAs~~~d~--~~~~V~lW~~~n-~~w 309 (1196)
.+........+++.|+. |+.|+..+... +...|..++..+ ..|
T Consensus 313 ~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~ 358 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDW 358 (751)
T ss_dssp ESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred EeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence 12211223345555543 66555555432 222455555554 344
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00032 Score=85.17 Aligned_cols=233 Identities=11% Similarity=0.025 Sum_probs=131.9
Q ss_pred cCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-c-cCCCEEEEEE------------
Q 000992 30 IEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-L-MEKEALIVGT------------ 94 (1196)
Q Consensus 30 ~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-s-pd~~~La~as------------ 94 (1196)
+|+..+|+... +..|-.+|+ .+.+.. +|.++|. +..+-.+++ + |+++++.+++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl--~t~~~~-~ii~ip~---------g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRC--DVMKCD-AILEIPN---------AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEET--TTTEEE-EEEECSS---------CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred cCCCEEEEEcCCCCEEEEEEC--CCceEe-eEEeCCC---------CCCCcceeeeecCCCcEEEEecccccccCCCCcc
Confidence 58899999765 445888888 443331 2212332 346888888 5 9999998884
Q ss_pred ------CCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCc---------------eEEEEecc----
Q 000992 95 ------SSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFG---------------QILVMTHD---- 146 (1196)
Q Consensus 95 ------~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~---------------tV~l~~~~---- 146 (1196)
.++.|.++|.++.++. .+|. .-..++.||||+++.+++.+. .|.+.++-
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg---~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG---NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC---CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 3457888999987653 2322 234567999999999998653 23333210
Q ss_pred ----Cce--eeeeecccccC--ccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-----
Q 000992 147 ----WDL--LYENPLEELAE--GFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT----- 213 (1196)
Q Consensus 147 ----~d~--~~~~~l~~~~~--~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~----- 213 (1196)
++. +.++..-.... .+.+ +..-+-...-..+.++|||+|+. ++.. ...+|-|+|..+.+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~--~~~Ipvg~~PhGv~~sPDGk~v~-V~~~-----~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLF--TRYIPIANNPHGCNMAPDKKHLC-VAGK-----LSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSS--EEEEEEESSCCCEEECTTSSEEE-EECT-----TSSBEEEEEGGGHHHHHHS
T ss_pred eccCCCeeEECcEEEEeCcccCCcee--EEEEecCCCceEEEEcCCCCEEE-EeCC-----CCCeEEEEECccccccccc
Confidence 000 00000000000 0000 00001112235789999999998 6652 46799999995432
Q ss_pred -------EEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-------eeEEE--EEeccCCCCcEEE
Q 000992 214 -------LQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-------LERSS--FDINEQIDSTVEL 277 (1196)
Q Consensus 214 -------l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-------l~~~~--f~l~~~~~~~V~~ 277 (1196)
.....+.-.+ -..++|+|+| .+-++..- ...|..|+.+. ....+ -++..+ ...-.
T Consensus 316 ~l~~~~~v~~~v~vG~g-P~h~aF~~dG-~aY~t~~l-----dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~--yqpGh 386 (595)
T 1fwx_A 316 NADPRSAVVAEPELGLG-PLHTAFDGRG-NAYTSLFL-----DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH--YQPGH 386 (595)
T ss_dssp CCCGGGGEEECCBCCSC-EEEEEECTTS-EEEEEETT-----TTEEEEEEHHHHHHHHHTCSCCCEEEEEECS--SCEEE
T ss_pred ccCcccceEEEcCCCCC-cceEEECCCC-eEEEEEec-----CCcEEEEEhhHhhhhhcccccceeEEEeecc--ccccc
Confidence 2333332233 4889999999 55555443 35788898532 11011 022211 12222
Q ss_pred E------EEccCCCeeEEEEccC
Q 000992 278 L------KWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 278 l------aWSpDg~~LAs~~~d~ 294 (1196)
. ..+|||++|.+...-.
T Consensus 387 ~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 387 LKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp EEETTTTSTTCCSSEEEEEESCC
T ss_pred ceeccceEeCCCCCEEEEcCCCC
Confidence 3 4479999999987543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0084 Score=76.48 Aligned_cols=244 Identities=9% Similarity=-0.002 Sum_probs=154.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++..|.++. |++++.+++|..++. ..+... .....+ ...-++...|.+|...++|. |-+|+.+|-|..
T Consensus 311 ~i~~i~~D~~g~-lWigt~~~Gl~~~~~--~~~~~~-~~~~~~----~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~ 381 (795)
T 4a2l_A 311 SVRSIFMDSQGG-MWLGTYFGGLNYYHP--IRNRFK-NIRNIP----YKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNL 381 (795)
T ss_dssp CEEEEEECTTSC-EEEEESSSCEEEECG--GGGSSE-EECCCT----TSSSCSCSSEEEEEECTTSC-EEEEESSSCEEE
T ss_pred cEEEEEEeCCcC-EEEEECCCCeEEeCC--Ccccce-EEcCCC----CCCCCCCCeeEEEEECCCCC-EEEEECCCCeEE
Confidence 678888898765 888998888999987 333321 111000 00122356799999888886 556888877999
Q ss_pred EECCCCeEEEee---------eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 102 HSVDGNATEVVG---------RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 102 w~~~~~~~e~vg---------~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
|+..++.+.... -....|.++...++|++|-+|+.++-|..++............ .. . ..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~-~~--------~--l~ 450 (795)
T 4a2l_A 382 YNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR-NS--------Q--LV 450 (795)
T ss_dssp ECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT-TS--------C--CS
T ss_pred EcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC-CC--------C--cC
Confidence 999887665332 1135699999999998666778766677766432222211110 00 0 11
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc------CCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL------KAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~------~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
...|.++...++|.+.+ ++ . .-+.+||..+++....... ....+.++...++|++.+++. .
T Consensus 451 ~~~v~~i~~d~~g~lwi--gt------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~--- 517 (795)
T 4a2l_A 451 NENVYAILPDGEGNLWL--GT------L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E--- 517 (795)
T ss_dssp CSCEEEEEECSSSCEEE--EE------S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S---
T ss_pred CCeeEEEEECCCCCEEE--Ee------c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C---
Confidence 34678999999999776 33 1 3477899877766543221 235678999999999877664 2
Q ss_pred CCCCeEEEEeCCCeeEEEEEe--c--cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 247 NKCPSIVFYERNGLERSSFDI--N--EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l--~--~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
.|..|+.++... .+.. . ......|.+|...++|.+.++.. .+ +..|+..+..
T Consensus 518 ----Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G----l~~~d~~~~~ 573 (795)
T 4a2l_A 518 ----GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG----FYCFNEKDKQ 573 (795)
T ss_dssp ----CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC----EEEEETTTTE
T ss_pred ----ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC----ceeECCCCCc
Confidence 377777543322 2211 1 01134699999999999776654 36 8888877654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.002 Score=72.18 Aligned_cols=234 Identities=11% Similarity=0.009 Sum_probs=133.0
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--c
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG--L 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~ 98 (1196)
...+++||+++. ||++. .++.|+.|+. ..+.. .+ .. . ...+.+|++.|+|+.+++....+ .
T Consensus 33 ~pegia~~~~g~-lyv~d~~~~~I~~~d~--~g~~~--~~-------~~--~--~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 33 FLENLASAPDGT-IFVTNHEVGEIVSITP--DGNQQ--IH-------AT--V--EGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECT--TCCEE--EE-------EE--C--SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcceEEECCCCC-EEEEeCCCCeEEEECC--CCceE--EE-------Ee--C--CCCceeEEEcCCCcEEEEeccCCcce
Confidence 577889999876 77775 5778999988 33211 11 11 1 24689999999999655544332 4
Q ss_pred EEEEECCCCeEEEeeeec--CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee-cccc-cCccccccCccccCCC
Q 000992 99 LLLHSVDGNATEVVGRVE--GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP-LEEL-AEGFDVHEPELSSSFS 174 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~~--~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~-l~~~-~~~~~Vs~tqf~~~~~ 174 (1196)
|..++..+++++.+.... .....++..+++..+++-+.++.|...+...... ... .... ...... ..+ .
T Consensus 97 v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~-~v~~~~~~~~~~~~~--~~~----~ 169 (306)
T 2p4o_A 97 VVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPMLARSNSE--SVF----P 169 (306)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGGGSCSSTT--CCS----C
T ss_pred EEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE-eEEEECCcccccccc--CCC----C
Confidence 666787777765333221 1234455567766666555677776655321100 000 0000 000000 000 1
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC-CcEE--EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS-GTLQ--ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~-G~l~--~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
.-..| +|||+++- ++. ...++|.+++.+. |++- ...... .....+++.|+|++.++... ...
T Consensus 170 ~pngi--s~dg~~ly-v~d-----~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va~~~------~~~ 234 (306)
T 2p4o_A 170 AANGL--KRFGNFLY-VSN-----TEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGATHI------YNS 234 (306)
T ss_dssp SEEEE--EEETTEEE-EEE-----TTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEECBT------TCC
T ss_pred cCCCc--CcCCCEEE-EEe-----CCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEEeCC------CCe
Confidence 22445 88998665 443 2457899999843 4321 111101 23467899999987666543 246
Q ss_pred EEEEeCCCeeEEEEEeccCCCCcEEEEEEc---cCCCeeEEEEccC
Q 000992 252 IVFYERNGLERSSFDINEQIDSTVELLKWN---CMSDLLAAVVRFE 294 (1196)
Q Consensus 252 V~~~e~nGl~~~~f~l~~~~~~~V~~laWS---pDg~~LAs~~~d~ 294 (1196)
|..|+.+|.......++.+ -....+++|. ||++.|.++...+
T Consensus 235 V~~~~~~G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 235 VVRIAPDRSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECTTCCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred EEEECCCCCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence 8899988854321122222 2458899999 8988888776643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00015 Score=84.16 Aligned_cols=97 Identities=4% Similarity=-0.228 Sum_probs=64.8
Q ss_pred CCCEEEEEeC-CC----cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE----------C
Q 000992 31 EQNRLFFASS-AN----NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT----------S 95 (1196)
Q Consensus 31 ~~~~l~~~s~-~~----~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as----------~ 95 (1196)
....+|+.+. ++ .+..+|. .+.+. +.+++.+ ... .+.++|||+.|.++. .
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~--~t~~v---~~~i~vG---------~~P-~i~~spDg~~lyVan~~~~r~~~G~~ 94 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCA--GCGVT---LGHSLGA---------FLS-LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEET--TTTEE---EEEEEEC---------TTC-EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred CCCeEEEECCccCCccceEEEEEC--CCCeE---EEEEeCC---------CCC-ceEECCCCCEEEEEcccccccccCCC
Confidence 4467888765 33 5677887 55443 3333333 234 799999999999886 3
Q ss_pred CCcEEEEECCCCeEE-E--ee-ee----cCcEEEEEECCCCCEEEEEeC--CceEEE
Q 000992 96 SGLLLLHSVDGNATE-V--VG-RV----EGGVRFISPSPDGDLLGVTTG--FGQILV 142 (1196)
Q Consensus 96 dG~I~lw~~~~~~~e-~--vg-~~----~~~I~~~awSPDg~~LA~~s~--d~tV~l 142 (1196)
+++|.+||..+++.. . +| .- -..-..+++||||++|.++.. ++.|.+
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V 151 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGL 151 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEE
Confidence 688999999987542 2 22 00 012457899999999999874 355665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.005 Score=67.13 Aligned_cols=200 Identities=11% Similarity=-0.073 Sum_probs=120.1
Q ss_pred CCEEEEEEccCCCEEEEEE-CCCcEEEEECCCCeEEEeeee-cCcEEEEEECCCCCEEEEEe-CCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGT-SSGLLLLHSVDGNATEVVGRV-EGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as-~dG~I~lw~~~~~~~e~vg~~-~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d~~~~ 152 (1196)
..+.+++|.|+++.|..+. .++.|..++.+++....+... -.....++++|++..|..+. ..+.|.+++.+......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 3678999999877666554 567899999988654422211 14678999999876666554 56678776654322111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEW 230 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slaw 230 (1196)
. .... -..-..+++.|++.+ ++ +... ...+.|.+++. +|....... ..-.....++|
T Consensus 116 ~-~~~~--------------~~~P~~i~vd~~~g~lyv-~~~~----~~~~~I~~~~~-dg~~~~~~~~~~~~~P~gia~ 174 (267)
T 1npe_A 116 L-FDTG--------------LVNPRGIVTDPVRGNLYW-TDWN----RDNPKIETSHM-DGTNRRILAQDNLGLPNGLTF 174 (267)
T ss_dssp E-ECSS--------------CSSEEEEEEETTTTEEEE-EECC----SSSCEEEEEET-TSCCCEEEECTTCSCEEEEEE
T ss_pred E-EECC--------------CCCccEEEEeeCCCEEEE-EECC----CCCcEEEEEec-CCCCcEEEEECCCCCCcEEEE
Confidence 1 1000 023478999996554 44 2321 01368888888 665444331 12234589999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|+|+.|-.+... ...|..++.+|.....+ +.. ......|+. |+..|-++.... +.|..++..+.+
T Consensus 175 d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~-~~~--~~~P~gi~~--d~~~lyva~~~~--~~v~~~d~~~g~ 240 (267)
T 1npe_A 175 DAFSSQLCWVDAG-----THRAECLNPAQPGRRKV-LEG--LQYPFAVTS--YGKNLYYTDWKT--NSVIAMDLAISK 240 (267)
T ss_dssp ETTTTEEEEEETT-----TTEEEEEETTEEEEEEE-EEC--CCSEEEEEE--ETTEEEEEETTT--TEEEEEETTTTE
T ss_pred cCCCCEEEEEECC-----CCEEEEEecCCCceEEE-ecC--CCCceEEEE--eCCEEEEEECCC--CeEEEEeCCCCC
Confidence 9998877666553 35899999887543332 221 123456654 455555554432 268888876654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0009 Score=73.90 Aligned_cols=191 Identities=10% Similarity=0.036 Sum_probs=118.7
Q ss_pred ccccCCCCCCEEEEEEccCCCEEEEEEC---CCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe-CCceEEE
Q 000992 68 EHIDLEPGDSITAFDYLMEKEALIVGTS---SGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILV 142 (1196)
Q Consensus 68 ~~~~~~~~~~v~~v~~spd~~~La~as~---dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l 142 (1196)
.++|.-+......++|+||+ .|.+++. ++.|..+|..++++. .+. .........+.++|+.|..++ .+++|.+
T Consensus 13 ~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~fgeGi~~~g~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 13 NEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSYFGEGLTLLNEKLYQVVWLKNIGFI 90 (266)
T ss_dssp EEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEETTCSEEEE
T ss_pred EEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCcceEEEEEeCCEEEEEEecCCEEEE
Confidence 33444333467899999997 4555442 578999999998764 221 122222233444566666665 4677877
Q ss_pred Ee-ccCceeeeeecc-cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc
Q 000992 143 MT-HDWDLLYENPLE-ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL 220 (1196)
Q Consensus 143 ~~-~~~d~~~~~~l~-~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~ 220 (1196)
.+ ..+..+.+++.. +.. +.++ +||+.+. ++. +.++|.++|..+.+...+..-
T Consensus 91 iD~~t~~v~~~i~~g~~~g-----------------~glt--~Dg~~l~-vs~------gs~~l~viD~~t~~v~~~I~V 144 (266)
T 2iwa_A 91 YDRRTLSNIKNFTHQMKDG-----------------WGLA--TDGKILY-GSD------GTSILYEIDPHTFKLIKKHNV 144 (266)
T ss_dssp EETTTTEEEEEEECCSSSC-----------------CEEE--ECSSSEE-EEC------SSSEEEEECTTTCCEEEEEEC
T ss_pred EECCCCcEEEEEECCCCCe-----------------EEEE--ECCCEEE-EEC------CCCeEEEEECCCCcEEEEEEE
Confidence 76 446666655543 111 3344 5888776 553 357999999988887776542
Q ss_pred CC-----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc----------CCCCcEEEEEEccCC
Q 000992 221 KA-----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE----------QIDSTVELLKWNCMS 284 (1196)
Q Consensus 221 ~~-----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~----------~~~~~V~~laWSpDg 284 (1196)
.. ...+.+.|. +|.+.|.... ...|...+. +|...+.+.+.. +.....+.|+|+||+
T Consensus 145 g~~~~p~~~~nele~~-dg~lyvn~~~------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~ 217 (266)
T 2iwa_A 145 KYNGHRVIRLNELEYI-NGEVWANIWQ------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN 217 (266)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETT------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred CCCCcccccceeEEEE-CCEEEEecCC------CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence 11 124678888 8866655433 357888885 666666665531 111356899999999
Q ss_pred CeeEEEEcc
Q 000992 285 DLLAAVVRF 293 (1196)
Q Consensus 285 ~~LAs~~~d 293 (1196)
+.|-+++..
T Consensus 218 ~~lfVTgk~ 226 (266)
T 2iwa_A 218 KRIFVTGKL 226 (266)
T ss_dssp TEEEEEETT
T ss_pred CEEEEECCC
Confidence 988887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0013 Score=71.55 Aligned_cols=192 Identities=13% Similarity=0.040 Sum_probs=124.2
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe-CCceEEEE
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVM 143 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~ 143 (1196)
+.++|+.+....-.+.|++ +....+.+..| .|+.+|+.++++...-............++|+.|-.++ .++.+.++
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 5667777778899999987 55555555554 89999999987652212234444444455566666665 46677777
Q ss_pred e-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC
Q 000992 144 T-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA 222 (1196)
Q Consensus 144 ~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~ 222 (1196)
+ .++..+.+++..... +.++ +||+.|. +|. +.++|.++|+.+.+...+.+-..
T Consensus 91 D~~tl~~~~ti~~~~~G-----------------wglt--~dg~~L~-vSd------gs~~l~~iDp~t~~~~~~I~V~~ 144 (243)
T 3mbr_X 91 DLATLTPRARFRYPGEG-----------------WALT--SDDSHLY-MSD------GTAVIRKLDPDTLQQVGSIKVTA 144 (243)
T ss_dssp ETTTTEEEEEEECSSCC-----------------CEEE--ECSSCEE-EEC------SSSEEEEECTTTCCEEEEEECEE
T ss_pred ECCcCcEEEEEeCCCCc-----------------eEEe--eCCCEEE-EEC------CCCeEEEEeCCCCeEEEEEEEcc
Confidence 6 456666666543221 4555 4677666 453 35789999998888877654221
Q ss_pred -----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEecc----------CCCCcEEEEEEccCCCe
Q 000992 223 -----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINE----------QIDSTVELLKWNCMSDL 286 (1196)
Q Consensus 223 -----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~----------~~~~~V~~laWSpDg~~ 286 (1196)
...+.+.|. +|++.|..-. ...|...| ++|...+.+.+.. +.....+.|||+|+++.
T Consensus 145 ~g~~~~~lNeLe~~-~G~lyanvw~------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~ 217 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGELLANVWL------TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR 217 (243)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETT------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred CCcccccceeeEEe-CCEEEEEECC------CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence 233567776 7876665532 24677777 4677777666541 11235688999999988
Q ss_pred eEEEEc
Q 000992 287 LAAVVR 292 (1196)
Q Consensus 287 LAs~~~ 292 (1196)
|-+.+.
T Consensus 218 lfVTGK 223 (243)
T 3mbr_X 218 LFVTGK 223 (243)
T ss_dssp EEEEET
T ss_pred EEEECC
Confidence 877654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.001 Score=73.37 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=117.9
Q ss_pred ceeEEeeecCCCEEEEEeC---CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCC
Q 000992 22 ILQFSALDIEQNRLFFASS---ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~---~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG 97 (1196)
...+++|+++ +.||.++. ++.|..+|+ .+++....+ + +.. ......+++. ++.| ++...++
T Consensus 22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~--~tg~v~~~i---~--l~~-----~~fgeGi~~~--g~~lyv~t~~~~ 86 (266)
T 2iwa_A 22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVAL--QTGKVENIH---K--MDD-----SYFGEGLTLL--NEKLYQVVWLKN 86 (266)
T ss_dssp CEEEEEECST-TEEEEEECSTTTCEEEEEET--TTCCEEEEE---E--CCT-----TCCEEEEEEE--TTEEEEEETTCS
T ss_pred CcccEEEeCC-CeEEEECCCCCCCEEEEEEC--CCCCEEEEE---e--cCC-----CcceEEEEEe--CCEEEEEEecCC
Confidence 3588999988 58999875 467999999 666652222 1 111 1233455554 4455 4555688
Q ss_pred cEEEEECCCCeE-EEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCC
Q 000992 98 LLLLHSVDGNAT-EVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
.|.++|..+.++ ..+ | ...+ ...+|||+.|.++.++++|.+++ ..+..+..+..... ..++
T Consensus 87 ~v~viD~~t~~v~~~i~~g-~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~--~~p~--------- 151 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQ-MKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN--GHRV--------- 151 (266)
T ss_dssp EEEEEETTTTEEEEEEECC-SSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET--TEEC---------
T ss_pred EEEEEECCCCcEEEEEECC-CCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC--Cccc---------
Confidence 999999998654 222 3 1122 34678999988888888888775 34454544443321 1121
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-------------CCceeEEEEcCCCCeEEEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-------------AFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-------------~~~v~slawsPdG~~IAs~ 240 (1196)
.....+.|. ||+.+| ... ....|.+-|..+|+...+..-. ......|+|+|+|+.+-.+
T Consensus 152 ~~~nele~~-dg~lyv-n~~------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 152 IRLNELEYI-NGEVWA-NIW------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp CCEEEEEEE-TTEEEE-EET------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred ccceeEEEE-CCEEEE-ecC------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 134678888 898777 333 2468999999999988876421 0133799999999877776
Q ss_pred ecC
Q 000992 241 YDR 243 (1196)
Q Consensus 241 s~d 243 (1196)
+..
T Consensus 224 gk~ 226 (266)
T 2iwa_A 224 GKL 226 (266)
T ss_dssp ETT
T ss_pred CCC
Confidence 653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00063 Score=76.74 Aligned_cols=193 Identities=10% Similarity=0.042 Sum_probs=113.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee--------------------ecCcEEEEEECC-CCCEEEEEe
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--------------------VEGGVRFISPSP-DGDLLGVTT 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~--------------------~~~~I~~~awSP-Dg~~LA~~s 135 (1196)
.+.+++|.++|+.+.++..+|.|..|+..++.+..... ..+....++++| +|+++ ++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-IVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-EEE
Confidence 46778899999988889999999999998876653321 113578999998 66544 454
Q ss_pred CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeecccc-----------ccCCCCE
Q 000992 136 GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCN-----------SSKLHKR 203 (1196)
Q Consensus 136 ~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~-----------~~~~d~~ 203 (1196)
..+.|..++.....+.... ....... ......+++.| ||.+++ ...... +....+.
T Consensus 99 ~~~~i~~~d~~~g~~~~~~--~~~~~~~---------~~~p~~i~~d~~~G~l~v-~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLA--TSVDGVP---------FKWLYAVTVDQRTGIVYF-TDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp TTTEEEEECTTCEECEEEE--SEETTEE---------CSCEEEEEECTTTCCEEE-EESCSSCCTTCHHHHHHHTCCCEE
T ss_pred CCCCEEEEeCCCCEEEEec--ccCCCCc---------ccccceEEEecCCCEEEE-ECCcccccccccceehcccCCCce
Confidence 4444665543321111110 0000000 02346799999 998777 332100 0012367
Q ss_pred EEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee---EEEEEeccCCCCcEEEEEE
Q 000992 204 LKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE---RSSFDINEQIDSTVELLKW 280 (1196)
Q Consensus 204 irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~---~~~f~l~~~~~~~V~~laW 280 (1196)
|..||..+|+......... ....|+|+|+|+.|..+... ...|..|+.+|.. ...|. .. .+ ...|++
T Consensus 167 v~~~d~~~~~~~~~~~~~~-~p~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~-~~--~g-P~gi~~ 236 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKELH-VPGGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLV-KI--PN-PGNIKR 236 (322)
T ss_dssp EEEEETTTTEEEEEEEEES-CCCEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEE-EC--SS-EEEEEE
T ss_pred EEEEeCCCCEEEEeccCCc-cCcceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEE-eC--CC-CCCeEE
Confidence 8889986676544332222 23679999999976655432 2578888876521 11121 11 12 667888
Q ss_pred ccCCCeeEEEEc
Q 000992 281 NCMSDLLAAVVR 292 (1196)
Q Consensus 281 SpDg~~LAs~~~ 292 (1196)
.++|.+.++...
T Consensus 237 d~~G~l~va~~~ 248 (322)
T 2fp8_A 237 NADGHFWVSSSE 248 (322)
T ss_dssp CTTSCEEEEEEE
T ss_pred CCCCCEEEEecC
Confidence 898886655443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0011 Score=72.78 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=124.7
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe-CCceEEEEe
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT 144 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~ 144 (1196)
+.++|..+......+.|+ ++....+.+.+|.|+.+|+.++++. .+ .+.........++|+.|-.++ .++.+.+++
T Consensus 46 v~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 344556556678899987 4666677788899999999998653 33 344554444455666666665 466777776
Q ss_pred -ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-
Q 000992 145 -HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA- 222 (1196)
Q Consensus 145 -~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~- 222 (1196)
.++..+.++...... +.++ +||+.|. ++. +..+|.++|..+++...+.+-..
T Consensus 123 ~~Tl~~~~ti~~~~eG-----------------wGLt--~Dg~~L~-vSd------Gs~~l~~iDp~T~~v~~~I~V~~~ 176 (268)
T 3nok_A 123 GMPPQRERTTRYSGEG-----------------WGLC--YWNGKLV-RSD------GGTMLTFHEPDGFALVGAVQVKLR 176 (268)
T ss_dssp TTTTEEEEEEECSSCC-----------------CCEE--EETTEEE-EEC------SSSEEEEECTTTCCEEEEEECEET
T ss_pred CCcCcEEEEEeCCCce-----------------eEEe--cCCCEEE-EEC------CCCEEEEEcCCCCeEEEEEEeCCC
Confidence 456666666543221 4455 5777777 553 35799999998988887754211
Q ss_pred ----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEecc---------C-CCCcEEEEEEccCCCee
Q 000992 223 ----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINE---------Q-IDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 223 ----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~---------~-~~~~V~~laWSpDg~~L 287 (1196)
...+.+.|. +|++.|..-. ...|...|. +|...+.+.+.. . .....+.|||+|+++.|
T Consensus 177 g~~v~~lNeLe~~-dG~lyanvw~------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 177 GQPVELINELECA-NGVIYANIWH------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETT------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CcccccccccEEe-CCEEEEEECC------CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 133667887 8876665533 246877874 677777665541 1 12356889999999888
Q ss_pred EEEEc
Q 000992 288 AAVVR 292 (1196)
Q Consensus 288 As~~~ 292 (1196)
-+.+.
T Consensus 250 fVTGK 254 (268)
T 3nok_A 250 FMTGK 254 (268)
T ss_dssp EEEET
T ss_pred EEeCC
Confidence 77654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00012 Score=85.12 Aligned_cols=101 Identities=11% Similarity=-0.031 Sum_probs=68.0
Q ss_pred EEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCC----CCCCCCeEEEEeC-CCeeEEEEEeccCC----CC
Q 000992 203 RLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRK----SENKCPSIVFYER-NGLERSSFDINEQI----DS 273 (1196)
Q Consensus 203 ~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~----~~~~~~~V~~~e~-nGl~~~~f~l~~~~----~~ 273 (1196)
+|-|.|..+++.+.+....... .+++||||+.+..+.... .+.....|.+||. ++...+++.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999887643333 799999999988875210 0011357999995 45555555443110 01
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEE--EEecC
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKI--CFFSN 306 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~l--W~~~n 306 (1196)
....+++||||+.|.++.... .+.|.+ ||..+
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~-~~~v~V~~iD~~t 158 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGS-SAAAGLSVPGASD 158 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSS-SCEEEEEETTTEE
T ss_pred CcceEEEcCCCCEEEEEccCC-CCeEEEEEEchhh
Confidence 245799999999999987531 126888 88765
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.001 Score=74.20 Aligned_cols=216 Identities=11% Similarity=0.033 Sum_probs=134.6
Q ss_pred CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE
Q 000992 32 QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV 111 (1196)
Q Consensus 32 ~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~ 111 (1196)
++.||+++.++.++.++. . ++..+... . +...+.++...+++. |.+++.+|.|..+|..+.....
T Consensus 107 ~~~l~v~t~~~~l~~~d~--~-g~~~~~~~-----~------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~ 171 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINT--D-GTEKWRFK-----T------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWR 171 (330)
T ss_dssp TTEEEEECTTSEEEEECT--T-SCEEEEEE-----C------SSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEE
T ss_pred CCEEEEEecCCEEEEEcC--C-CCEEEEEc-----C------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEE
Confidence 788999998888999998 4 43333322 0 112344455666776 6668888999999998433323
Q ss_pred eeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEe
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATL 191 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsv 191 (1196)
.......+.++...++|.+.+ ++ +.|..++.+......... ....+.++...+||...+
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d~~g~~~~~~~~----------------~~~~~~~~~~~~~g~l~v-- 230 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYF-GS--DKVYAINPDGTEKWNFYA----------------GYWTVTRPAISEDGTIYV-- 230 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEE-ES--SSEEEECTTSCEEEEECC----------------SSCCCSCCEECTTSCEEE--
T ss_pred EecCCCceeeeEEcCCCEEEE-Ee--CEEEEECCCCcEEEEEcc----------------CCcceeceEECCCCeEEE--
Confidence 332234577788888988654 34 667776644333222211 113456788899998776
Q ss_pred eccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC
Q 000992 192 SEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI 271 (1196)
Q Consensus 192 ss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~ 271 (1196)
++ .++.+..+|. +|+.............++...++|++.+++ .+ ..|..++.+|.....+.++
T Consensus 231 ~t------~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~~------ggl~~~d~~g~~~~~~~~~--- 293 (330)
T 3hxj_A 231 TS------LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS-YD------GHLYAINPDGTEKWNFETG--- 293 (330)
T ss_dssp EE------TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC-TT------CEEEEECTTSCEEEEEECS---
T ss_pred Ec------CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec-CC------CCEEEECCCCcEEEEEEcC---
Confidence 33 2356777787 887776665444555667777888766544 32 3588889888765554433
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
...+.++...++|++.+ ++.++ .+.+...
T Consensus 294 ~~~~~~~~~d~~g~l~~-gt~~G---~~~~~~~ 322 (330)
T 3hxj_A 294 SWIIATPVIDENGTIYF-GTRNG---KFYALFN 322 (330)
T ss_dssp SCCCSCCEECTTCCEEE-ECTTS---CEEEEEC
T ss_pred CccccceEEcCCCEEEE-EcCCC---eEEEEec
Confidence 23466777888887554 55666 4655443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0079 Score=67.26 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=109.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCce--EEEEe-ccCceee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQ--ILVMT-HDWDLLY 151 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~t--V~l~~-~~~d~~~ 151 (1196)
+..+.+++|.|+|+.+++-..+|.|..|+.+++...... ..+....++++|||+++++....+. |..++ .+.....
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 356889999999997777668899999999886544433 2456889999999997665544323 44332 2222211
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc--EEEEe------ccCCC
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT--LQASS------ELKAF 223 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~--l~~~~------e~~~~ 223 (1196)
-.... . . ..-..++..+++..++ +.+ ..+.|.++|..+|+ ..... .....
T Consensus 110 ~~~~~-~--------~------~~~~g~~~~~~~~~~v-~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 110 LLTLP-D--------A------IFLNGITPLSDTQYLT-ADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp EEECT-T--------C------SCEEEEEESSSSEEEE-EET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred EEeCC-C--------c------cccCcccccCCCcEEE-EEC------CCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 00100 0 0 0112344445666555 232 24678888885442 21111 11111
Q ss_pred --ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC--ee--EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 224 --MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG--LE--RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 224 --~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG--l~--~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
....| +|||+.|-.+... ...|..|+.++ .. ...|. .. .....|++++||.+.++....+
T Consensus 168 ~~~pngi--s~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~-~~---~~P~gi~vd~dG~l~va~~~~~--- 233 (306)
T 2p4o_A 168 FPAANGL--KRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFV-EQ---TNIDDFAFDVEGNLYGATHIYN--- 233 (306)
T ss_dssp SCSEEEE--EEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEE-ES---CCCSSEEEBTTCCEEEECBTTC---
T ss_pred CCcCCCc--CcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEe-cc---CCCCCeEECCCCCEEEEeCCCC---
Confidence 22445 8999877666543 35788888653 21 11111 11 1234689999998655544333
Q ss_pred eEEEEEec
Q 000992 298 SVKICFFS 305 (1196)
Q Consensus 298 ~V~lW~~~ 305 (1196)
.|..++..
T Consensus 234 ~V~~~~~~ 241 (306)
T 2p4o_A 234 SVVRIAPD 241 (306)
T ss_dssp CEEEECTT
T ss_pred eEEEECCC
Confidence 68877764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0033 Score=68.92 Aligned_cols=193 Identities=12% Similarity=0.087 Sum_probs=115.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++||+++++||++++ ++.|+..|. . ++.... ++ +.+ ....-+|++.+++.++++.-.++.+.
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~--~-g~v~~~---i~--l~g-----~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTT--N-GDLIRT---IP--LDF-----VKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEET--T-CCEEEE---EE--CSS-----CSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeC--C-CCEEEE---Ee--cCC-----CCChHHeEEeCCCEEEEEECCCCcEE
Confidence 6899999999999999866 667999998 4 443211 11 111 14577899999987544433566788
Q ss_pred EEECCC-CeE---EEee------eecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccc
Q 000992 101 LHSVDG-NAT---EVVG------RVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 101 lw~~~~-~~~---e~vg------~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
+++... +.+ ...+ ....+...++|+|+++.|-++.+.....++..+. ......++...+ ..+...
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~-~~~~~~--- 169 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKD-KALQRQ--- 169 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEEC-HHHHHT---
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecc-hhhccc---
Confidence 877654 222 2111 1234678999999999888887765555543221 001000100000 000000
Q ss_pred cCCCCeEEEEEccCCc-eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC---------ceeEEEEcCCCCeEEEE
Q 000992 171 SSFSFKSPISWRGDGK-YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF---------MGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~-~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~---------~v~slawsPdG~~IAs~ 240 (1196)
.+-.....+++.|... +++ +|. ..+.+-++|. +|+..+...-..+ .-..|+|.|+|++..++
T Consensus 170 ~~~~d~S~l~~dp~tg~lli-LS~------~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLV-LSH------ESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEE-EET------TTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred cccCCceeEEEcCCCCeEEE-EEC------CCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 0012346888888655 444 553 4588999999 8987776532211 23799999999966653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0076 Score=71.29 Aligned_cols=240 Identities=8% Similarity=-0.019 Sum_probs=133.4
Q ss_pred ceeEEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-C--
Q 000992 22 ILQFSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS-G-- 97 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d-G-- 97 (1196)
.+.++++|+ +.+.||++...+.|..+++ ..+.. .+ +.. ....+..|+|+++|+.|.++... |
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~--~~~~v----~~----~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~ 203 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDF--EKEYV----ST----VYS----GLSKVRTICWTHEADSMIITNDQNNND 203 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEET--TTTEE----EE----EEC----CCSCEEEEEECTTSSEEEEEECCSCTT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEEC--CCCEE----EE----Eec----CCCCcceEEEeCCCCEEEEEeCCCCcc
Confidence 567899998 5888999977677889988 33332 11 111 23579999999999966666542 2
Q ss_pred --cEEEEECCCCeE--EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 98 --LLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 98 --~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.+...+.++... ..+.. -.....++++| +|.+.++-..++.|..++.+........ ... .
T Consensus 204 ~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~--~~~------------~ 268 (430)
T 3tc9_A 204 RPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLF--TIQ------------D 268 (430)
T ss_dssp SEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEE--ECS------------S
T ss_pred cceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE--EcC------------C
Confidence 344455554322 22222 23457788999 7777766667788877765432221111 000 0
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcE--EEEecc---CCCc------------ee-EEEEc-
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTL--QASSEL---KAFM------------GA-VLEWM- 231 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l--~~~~e~---~~~~------------v~-slaws- 231 (1196)
...-..|+|+|||++|- ++. ...+.|.+++.+ +|.+ ..+..+ ..+. -. .++..
T Consensus 269 ~~~P~gia~~pdG~~ly-v~d-----~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~ 342 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAY-IVV-----VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKN 342 (430)
T ss_dssp SSCCEEEEECTTSSEEE-EEE-----TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEEC
T ss_pred CCcceeEEEcCCCCEEE-EEE-----CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcc
Confidence 01236899999999554 333 135788887762 2332 111111 1110 12 45553
Q ss_pred -------CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEe-----cc--CC-------CCcEEEEEEccCCCeeEEE
Q 000992 232 -------PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDI-----NE--QI-------DSTVELLKWNCMSDLLAAV 290 (1196)
Q Consensus 232 -------PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l-----~~--~~-------~~~V~~laWSpDg~~LAs~ 290 (1196)
++|++.++=.. .+.|+.++.+|.....+-. .+ .+ -.....|+++|++..|.++
T Consensus 343 ~~y~~~D~~g~lyvaD~~------n~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa 416 (430)
T 3tc9_A 343 PAYKGSSDEYDFYFCDRE------NHCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG 416 (430)
T ss_dssp GGGTTSSCCEEEEEEEGG------GTEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE
T ss_pred ccccccCCCCeEEEEECC------CcEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE
Confidence 44666555333 3578888888854332211 00 00 0247889999954444444
Q ss_pred EccCCcceEEEEEe
Q 000992 291 VRFEEYDSVKICFF 304 (1196)
Q Consensus 291 ~~d~~~~~V~lW~~ 304 (1196)
.... +.|+..+.
T Consensus 417 D~~n--~rIr~i~~ 428 (430)
T 3tc9_A 417 DREN--RRIRKIGY 428 (430)
T ss_dssp EGGG--TEEEEEEE
T ss_pred ECCC--CeEEEEcc
Confidence 3322 25666553
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0017 Score=71.13 Aligned_cols=184 Identities=9% Similarity=0.083 Sum_probs=114.5
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG 97 (1196)
-.+++.|+ + +.||.++.. +.|..+|+ .+++...++ ++.+...--+++. +++.|.. ...++
T Consensus 44 ftqGL~~~-~-~~LyestG~~g~S~v~~vD~--~Tgkv~~~~----------~l~~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 44 FTEGFFYR-N-GYFYESTGLNGRSSIRKVDI--ESGKTLQQI----------ELGKRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEE-T-TEEEEEEEETTEEEEEEECT--TTCCEEEEE----------ECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred ccceEEEE-C-CEEEEECCCCCCceEEEEEC--CCCcEEEEE----------ecCCccceeEEEE--eCCEEEEEEeeCC
Confidence 35788888 4 588888653 47999999 666653222 1111111233433 4555554 45688
Q ss_pred cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCC
Q 000992 98 LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 98 ~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+.+||..+.+.. .+.. .+ .....++||+.|....++++|.+++ ..+..+..+..... +.++ ..
T Consensus 108 ~v~v~D~~t~~~~~ti~~-~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~--g~~~---------~~ 173 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNY-DG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAH--GEEL---------PE 173 (262)
T ss_dssp EEEEEETTTCCEEEEEEC-SS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEET--TEEC---------CC
T ss_pred EEEEEECccCcEEEEEEC-CC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccC--Cccc---------cc
Confidence 9999999986542 2221 11 2234557899888888788887775 34565555554321 1222 23
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC------------CCceeEEEEcCCCCeEEEEecC
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK------------AFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~------------~~~v~slawsPdG~~IAs~s~d 243 (1196)
...+.|. ||+.+| ... ....|.+.|..+|+...+..-. ...-+.|||+|+++.|-.++..
T Consensus 174 lNELe~~-~G~lya-n~w------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 174 LNELEWV-DGEIFA-NVW------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEEEE-TTEEEE-EET------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cceeEEE-CCEEEE-EEc------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 3567887 898887 333 2468889999999988765421 1123889999999988777653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0052 Score=66.69 Aligned_cols=184 Identities=9% Similarity=0.015 Sum_probs=115.3
Q ss_pred ceeEEeeecCCCEEEEEeCC---CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSA---NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~---~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~ 98 (1196)
-.+++.||. +.||..+.. +.|..+|+ .+++....+. ++.. ..--+++.. .++..++...++.
T Consensus 22 ftqGL~~~~--~~LyestG~~g~S~v~~vD~--~tgkv~~~~~-l~~~---------~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 22 FTEGLFYLR--GHLYESTGETGRSSVRKVDL--ETGRILQRAE-VPPP---------YFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp CEEEEEEET--TEEEEEECCTTSCEEEEEET--TTCCEEEEEE-CCTT---------CCEEEEEEE-TTEEEEEESSSSE
T ss_pred ccccEEEEC--CEEEEECCCCCCceEEEEEC--CCCCEEEEEe-CCCC---------cceeEEEEe-CCEEEEEEeeCCE
Confidence 577899986 789998664 47999999 6666532221 2211 112333333 2344455667899
Q ss_pred EEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCe
Q 000992 99 LLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 99 I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
+.+||.++.+.. .+..-..| ...++||+.|..+.++++|.+++ ..+..+..+..... +.++ ..+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~--g~~~---------~~l 152 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG--GRPL---------DNL 152 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEET--TEEC---------CCE
T ss_pred EEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC--Cccc---------ccc
Confidence 999999986542 22211122 23347888888888888998876 44555555554332 2222 234
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-------------CCCceeEEEEcCCCCeEEEEec
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-------------KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-------------~~~~v~slawsPdG~~IAs~s~ 242 (1196)
..+.|. ||+.+| -.. ....|.+-|..+|+......- ....-+.|||.|+++.|-.++.
T Consensus 153 NeLe~~-~G~lya-nvw------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 153 NELEWV-NGELLA-NVW------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEE-TTEEEE-EET------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eeeEEe-CCEEEE-EEC------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 567777 888887 333 235788889999998876531 1123488999999888777765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0032 Score=79.04 Aligned_cols=248 Identities=8% Similarity=0.014 Sum_probs=138.2
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcEEEEEC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLLLLHSV 104 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I~lw~~ 104 (1196)
+++.||+++.++.++.+|. .+++..|+...-...-....+. ...+. .+..+.+++. +|.|..+|.
T Consensus 127 ~~~~v~v~~~dg~l~alD~--~tG~~~W~~~~~~~~~~~~~~~-~~p~v------~~~~v~v~~~~~~~~~~g~v~a~D~ 197 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDA--ATGKEVWHQNTFEGQKGSLTIT-GAPRV------FKGKVIIGNGGAEYGVRGYITAYDA 197 (677)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEETTTTCCSSCBCC-SCCEE------ETTEEEECCBCTTTCCBCEEEEEET
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCEEeeecCCcCcCcCcccc-cCcEE------ECCEEEEEecccccCCCCEEEEEEC
Confidence 4789999999999999999 7777767754210000000010 11111 1345555543 688999999
Q ss_pred CCCeEE--E-e-eee-----------------------------cCcEEEEEECCCCCEEEEEeCCce------------
Q 000992 105 DGNATE--V-V-GRV-----------------------------EGGVRFISPSPDGDLLGVTTGFGQ------------ 139 (1196)
Q Consensus 105 ~~~~~e--~-v-g~~-----------------------------~~~I~~~awSPDg~~LA~~s~d~t------------ 139 (1196)
.+++.. . . +.. ......++++|++.+|.++++++.
T Consensus 198 ~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 198 ETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred CCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCC
Confidence 887653 1 1 110 001135789999999999988763
Q ss_pred -------EEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCC---ceEEEeeccccccCCCCEEEEEE
Q 000992 140 -------ILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG---KYFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 140 -------V~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG---~~lAsvss~d~~~~~d~~irVWd 208 (1196)
|.-++. +++.+-.......+ .+ .+.. .....-+....|| ..++ +++ .++.|.++|
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d--~w----d~~~-~~~p~l~~~~~dG~~~~~l~-~~~------~~G~l~~lD 343 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGD--NW----DYTS-TQPMILADIKIAGKPRKVIL-HAP------KNGFFFVLD 343 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTC--CS----CCCC-CSCCEEEEEEETTEEEEEEE-ECC------TTSEEEEEE
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCc--cc----cccc-CCCcEEEecccCCcEeeEEE-EEC------CCCEEEEEE
Confidence 333321 12211111111000 00 0000 0111223334488 5666 454 468999999
Q ss_pred CCCCcEEEEeccCC-Cc----------e------------------------eEEEEcCCCCeEEEEecCCC--------
Q 000992 209 RDSGTLQASSELKA-FM----------G------------------------AVLEWMPSGANIAAVYDRKS-------- 245 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~-~~----------v------------------------~slawsPdG~~IAs~s~d~~-------- 245 (1196)
+.+|+++...+... .+ + ..++++|++.++.+...+..
T Consensus 344 ~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~ 423 (677)
T 1kb0_A 344 RTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKK 423 (677)
T ss_dssp TTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTT
T ss_pred CCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccc
Confidence 99999987654211 00 0 26799999988876543200
Q ss_pred -----------------------------CCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC
Q 000992 246 -----------------------------ENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE 295 (1196)
Q Consensus 246 -----------------------------~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~ 295 (1196)
......|.-|+. +|...-++... ..++...++++|.++.+++.++
T Consensus 424 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~~~g~~v~~g~~dg- 498 (677)
T 1kb0_A 424 WEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV----SPWNGGTLTTAGNVVFQGTADG- 498 (677)
T ss_dssp CCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS-
T ss_pred cccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC----CCCcCcceEeCCCEEEEECCCC-
Confidence 000145777885 45544333221 2344556778888999988888
Q ss_pred cceEEEEEecCCE
Q 000992 296 YDSVKICFFSNNH 308 (1196)
Q Consensus 296 ~~~V~lW~~~n~~ 308 (1196)
.++.||..+.+
T Consensus 499 --~l~a~D~~tG~ 509 (677)
T 1kb0_A 499 --RLVAYHAATGE 509 (677)
T ss_dssp --EEEEEETTTCC
T ss_pred --cEEEEECCCCc
Confidence 89999988764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=93.22 Aligned_cols=182 Identities=10% Similarity=-0.022 Sum_probs=91.0
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT- 109 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~- 109 (1196)
+++.||+++.++.++.||. .+++..|+... +.+.+..+.+++..+++++.||.|..||..+++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~--~tG~~~W~~~~-------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSK--RTGSIKWTLKE-------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEET--TTCCEEEEEEC-------------CCSCCCC-----CCEEECTTTCCEEEC-----CCS
T ss_pred eCCEEEEEcCCCEEEEEEC--CCCCEEEEecC-------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee
Confidence 5789999999999999999 77777676541 1222333456787888888999999999977643
Q ss_pred EEeeee-cCcEEE-EEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 110 EVVGRV-EGGVRF-ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 110 e~vg~~-~~~I~~-~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
.....+ ...+.+ ...+ ++..|++++.+++|..|+. +++.+-.... + ..+.++|+|.
T Consensus 73 w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----------------~----~~~~~~p~~~ 131 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----------------A----FADSLSPSTS 131 (369)
T ss_dssp EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred eeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----------------C----CcccccccCC
Confidence 122111 111110 1111 4567778888899987652 2322211110 0 1234566787
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCC---CeEEEEecCCCCCCCCeEEEEeC-CCeeE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSG---ANIAAVYDRKSENKCPSIVFYER-NGLER 262 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG---~~IAs~s~d~~~~~~~~V~~~e~-nGl~~ 262 (1196)
.+. +++ .++.|+.||..+|++....+... ..+.++.+++ ..+.+++.+ ..|..|+. +|...
T Consensus 132 ~v~-~~~------~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~d------g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 132 LLY-LGR------TEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGD------GLVVTVDSESGDVL 196 (369)
T ss_dssp -EE-EEE------EEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETS------CEEEEECTTTCCEE
T ss_pred EEE-EEe------cCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCC------CEEEEEECCCCcEE
Confidence 777 555 24789999998998776543211 1233444442 445555553 46888885 56543
Q ss_pred E
Q 000992 263 S 263 (1196)
Q Consensus 263 ~ 263 (1196)
-
T Consensus 197 W 197 (369)
T 2hz6_A 197 W 197 (369)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=2e-05 Score=91.53 Aligned_cols=180 Identities=12% Similarity=-0.030 Sum_probs=88.0
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccc
Q 000992 86 EKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFD 163 (1196)
Q Consensus 86 d~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~ 163 (1196)
++..+++++.||.|..||..+|++. .... +++.+..+.+||..+++++.|++|..|+. +++.+-....+.. ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~---~~ 82 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP---EL 82 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH---HH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc---cc
Confidence 5788999999999999999887664 2222 55667778889989888889999988753 3332211111100 00
Q ss_pred cccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecC
Q 000992 164 VHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 164 Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d 243 (1196)
+. .+.....|| .++ +++ .++.|+.||..+|+.+.....+. ...++|+|..|.+++.+
T Consensus 83 ~~-----------~sp~~~~~~-~v~-~g~------~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~d 139 (369)
T 2hz6_A 83 VQ-----------ASPCRSSDG-ILY-MGK------KQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTE 139 (369)
T ss_dssp HT-----------TCSCC------CC-CCE------EEEEEEEECCC--------------------------EEEEEEE
T ss_pred cc-----------cCceEecCC-EEE-EEe------CCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecC
Confidence 00 001112344 444 344 35789999998999988765432 34678899998888764
Q ss_pred CCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCC---CeeEEEEccCCcceEEEEEecCC
Q 000992 244 KSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMS---DLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg---~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
..|..|+. +|...-.+.... ....++++++ ..+.+++.++ .|..|+..+.
T Consensus 140 ------g~v~a~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg---~v~a~d~~tG 193 (369)
T 2hz6_A 140 ------YTITMYDTKTRELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDG---LVVTVDSESG 193 (369)
T ss_dssp ------EEEECCCSSSSSCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSC---EEEEECTTTC
T ss_pred ------CEEEEEECCCCCEEEeEeccc-----ccCccccCCccccceEEEECCCC---EEEEEECCCC
Confidence 35888884 565433332211 1223344443 4566677777 7889987654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0018 Score=81.42 Aligned_cols=204 Identities=10% Similarity=0.051 Sum_probs=113.8
Q ss_pred EEeeecCCCEEEEEeCCC-------------------cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc
Q 000992 25 FSALDIEQNRLFFASSAN-------------------NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM 85 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp 85 (1196)
..++|++++.||+++.++ .|+.+|. .+++..|...+.+.+... +.....++-.....
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~--~TG~~~W~~~~~~~d~wd--~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA--DTGEYVWHYQTTPGDAWD--YTATQHMILAELPI 314 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET--TTCCEEEEEESSTTCCSC--CCCCSCEEEEEEEE
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc--cCCceeEeeecCCccccc--ccCCCCcEEEeecc
Confidence 578999999999998765 3999999 788777775532211111 11112233333344
Q ss_pred CCC---EEEEEECCCcEEEEECCCCeEEE---eee------ec--------------------CcE-----------EEE
Q 000992 86 EKE---ALIVGTSSGLLLLHSVDGNATEV---VGR------VE--------------------GGV-----------RFI 122 (1196)
Q Consensus 86 d~~---~La~as~dG~I~lw~~~~~~~e~---vg~------~~--------------------~~I-----------~~~ 122 (1196)
+|+ .|+.++.+|.+..+|..++++.. ... ++ ..+ ..+
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~ 394 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPM 394 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCC
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcc
Confidence 776 78899999999999999886531 000 00 000 127
Q ss_pred EECCCCCEEEEEeCCceEEEEecc----Cce-----eeeee--cccc----------cCccccc-------cCccc-cCC
Q 000992 123 SPSPDGDLLGVTTGFGQILVMTHD----WDL-----LYENP--LEEL----------AEGFDVH-------EPELS-SSF 173 (1196)
Q Consensus 123 awSPDg~~LA~~s~d~tV~l~~~~----~d~-----~~~~~--l~~~----------~~~~~Vs-------~tqf~-~~~ 173 (1196)
+++|+..+|.+.+.+....++... |+. ..... ..+. .....+. +..|+ .+.
T Consensus 395 a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~ 474 (689)
T 1yiq_A 395 SYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV 474 (689)
T ss_dssp EEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES
T ss_pred eECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC
Confidence 899999998888765444333211 000 00000 0000 0000000 00011 001
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAA 239 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs 239 (1196)
.....-.+...|..+. +++ .|+.|++||.++|+++..++...+ ....++|+++|++.++
T Consensus 475 ~~~~~g~~~tagglvf-~gt------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 475 TIFNGGTLSTAGNLVF-EGS------ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SSCCCCEEEETTTEEE-EEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCccCccceECCCEEE-EEC------CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 1112224445565555 454 479999999999999988764333 3367889999985443
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0042 Score=68.11 Aligned_cols=182 Identities=13% Similarity=0.038 Sum_probs=114.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE-EEEECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL-IVGTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L-a~as~dG~I 99 (1196)
-.+++.|+ ++.||.++. ++.|..+|+ .+++...++ ++.. ..--++++ +++.| ++...++.+
T Consensus 56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~--~Tgkv~~~~--l~~~---------~FgeGit~--~g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGHQGTLRQLSL--ESAQPVWME--RLGN---------IFAEGLAS--DGERLYQLTWTEGLL 118 (268)
T ss_dssp CEEEEEEE--TTEEEEEETTTTEEEECCS--SCSSCSEEE--ECTT---------CCEEEEEE--CSSCEEEEESSSCEE
T ss_pred ccceEEEE--CCEEEEEcCCCCEEEEEEC--CCCcEEeEE--CCCC---------cceeEEEE--eCCEEEEEEccCCEE
Confidence 34678887 589999866 567889999 666653222 2222 11233444 44444 445578899
Q ss_pred EEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 100 LLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 100 ~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
.+||..+.+.. .+.. .+ .....++||+.|..+.++++|.+++ ..+..+..+..... +..+ ....
T Consensus 119 ~V~D~~Tl~~~~ti~~-~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~--g~~v---------~~lN 184 (268)
T 3nok_A 119 FTWSGMPPQRERTTRY-SG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR--GQPV---------ELIN 184 (268)
T ss_dssp EEEETTTTEEEEEEEC-SS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEET--TEEC---------CCEE
T ss_pred EEEECCcCcEEEEEeC-CC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC--Cccc---------cccc
Confidence 99999986542 2221 11 1123347899998888888898876 44565555554332 2222 2346
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-------------CCceeEEEEcCCCCeEEEEec
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-------------AFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-------------~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+.|. ||+.+| ... ....|.+-|..+|+...+..-. ..--+.|||.|+++.|-.++.
T Consensus 185 eLe~~-dG~lya-nvw------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 185 ELECA-NGVIYA-NIW------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEE-TTEEEE-EET------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccEEe-CCEEEE-EEC------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 67888 898877 333 2468888999999988765311 123488999999887766654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0012 Score=82.90 Aligned_cols=206 Identities=12% Similarity=0.112 Sum_probs=115.2
Q ss_pred eEEeeecCCCEEEEEeCCC-------------------cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc
Q 000992 24 QFSALDIEQNRLFFASSAN-------------------NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL 84 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s 84 (1196)
...++|++++.||+.+.+. .|+.+|. .+++..|...+.+.+.- ++.....+.-+...
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~--~TG~~~W~~~~~~~d~w--d~~~~~~p~l~~~~ 321 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP--DTGKYKWHYQETPGDNW--DYTSTQPMILADIK 321 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCS--CCCCCSCCEEEEEE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC--CCCCEEEEEecCCCccc--ccccCCCcEEEecc
Confidence 3578999999999997653 4999999 77887777653222110 01111234444555
Q ss_pred cCC---CEEEEEECCCcEEEEECCCCeEE-E--eeeec--------C-cE------------------------EEEEEC
Q 000992 85 MEK---EALIVGTSSGLLLLHSVDGNATE-V--VGRVE--------G-GV------------------------RFISPS 125 (1196)
Q Consensus 85 pd~---~~La~as~dG~I~lw~~~~~~~e-~--vg~~~--------~-~I------------------------~~~awS 125 (1196)
.|| ..|++++.+|.|.++|..++++. . ++... + .+ ..+++|
T Consensus 322 ~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d 401 (677)
T 1kb0_A 322 IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (677)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence 688 78999999999999999988653 1 11000 0 01 157899
Q ss_pred CCCCEEEEEeCCceEEEEecc-Cce--------------eeee--eccc--ccCccccc-------cCccc-cCCCCeEE
Q 000992 126 PDGDLLGVTTGFGQILVMTHD-WDL--------------LYEN--PLEE--LAEGFDVH-------EPELS-SSFSFKSP 178 (1196)
Q Consensus 126 PDg~~LA~~s~d~tV~l~~~~-~d~--------------~~~~--~l~~--~~~~~~Vs-------~tqf~-~~~~~v~~ 178 (1196)
|++.++.+.+.+-...++... |.. ..+. .... ......|. +..|+ .+......
T Consensus 402 p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~ 481 (677)
T 1kb0_A 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG 481 (677)
T ss_dssp TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC
Confidence 999988887654222221100 000 0000 0000 00000000 00000 01111233
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeEEEEcCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~slawsPdG~~IAs~ 240 (1196)
...+.+|..+. +++ .++.+++||..+|+.+..+.- .......+.|+++|++..+.
T Consensus 482 g~~~~~g~~v~-~g~------~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 482 GTLTTAGNVVF-QGT------ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CEEEETTTEEE-EEC------TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cceEeCCCEEE-EEC------CCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 34556666666 454 468999999999999988763 33334678888999755443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.061 Score=68.35 Aligned_cols=247 Identities=11% Similarity=-0.012 Sum_probs=150.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++..|.++. |++++.+++|..++. ..+... .....+.. ....-++...|.+|...++|. |-+|+.++-|..
T Consensus 314 ~v~~i~~D~~g~-lWigt~~~Gl~~~~~--~~~~~~-~~~~~~~~-~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~ 387 (781)
T 3v9f_A 314 SARYIFQDSFNN-IWIGTWGGGINFISN--APPTFH-TWSYSPTQ-MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINV 387 (781)
T ss_dssp CEEEEEECSSCC-EEEEEBSSCEEEECS--SCCSCE-EEC----C-CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEE
T ss_pred eEEEEEEeCCCC-EEEEecCCeEEEeCC--CCCcce-eeccCccc-cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEE
Confidence 678888998765 899998788999987 333321 01000000 000112346799998888876 556776666889
Q ss_pred EECCCCeEEEe----eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGNATEVV----GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~~~e~v----g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+..++..... +.....|.++...++|.+.+ ++.++-|..++..-......... . .....|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~--~-----------~~~~~v~ 453 (781)
T 3v9f_A 388 FENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELE--K-----------NELLDVR 453 (781)
T ss_dssp EETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCST--T-----------TCCCCEE
T ss_pred EECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccC--C-----------CCCCeEE
Confidence 99887655421 22246799999999988766 66555566554321111111100 0 1124678
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC-----CCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK-----AFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~-----~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
+|...++|.+.+ ++ . .-+.+||..+++........ ...+.++...++|++.+++... .+
T Consensus 454 ~i~~d~~g~lwi--gt------~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~-------Gl 517 (781)
T 3v9f_A 454 VFYEDKNKKIWI--GT------H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG-------GV 517 (781)
T ss_dssp EEEECTTSEEEE--EE------T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS-------CE
T ss_pred EEEECCCCCEEE--EE------C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC-------CE
Confidence 999999998776 33 1 35778898777665433222 3567899999999987765422 36
Q ss_pred EEEeCCCeeEEEEEecc-CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 253 VFYERNGLERSSFDINE-QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~~-~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
..|+.++.....|.... -....|.+|...++|.+.++.. .+ .|..|+..+.+
T Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~G---lv~~~d~~~~~ 570 (781)
T 3v9f_A 518 GIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EG---LVCFPSARNFD 570 (781)
T ss_dssp EEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TE---EEEESCTTTCC
T ss_pred EEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CC---ceEEECCCCCc
Confidence 67776654333232111 1135699999999999776654 55 22777766543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0048 Score=77.56 Aligned_cols=247 Identities=10% Similarity=0.070 Sum_probs=135.4
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeecc-ccccccccCCCCCCEEEEEEccCCCEEEEEE------CCCcEEEEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAI-SAEIEHIDLEPGDSITAFDYLMEKEALIVGT------SSGLLLLHS 103 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~v~~v~~spd~~~La~as------~dG~I~lw~ 103 (1196)
+++.||+++.++.++.+|. .+++..|+.... +... .... ....++ .++ .+++++ .+|.|.-||
T Consensus 120 ~~g~v~v~~~dg~l~AlDa--~TG~~~W~~~~~~~~~~-~~~~-~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D 189 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDA--KTGQRAWSVDTRADHKR-SYTI-TGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYD 189 (689)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEECCSCTTS-CCBC-CSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEE
T ss_pred ECCEEEEEccCCEEEEEEC--CCCCEeeeecCcCCCCC-Cccc-cCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEE
Confidence 4688999999999999999 778776775421 1000 0000 011111 144 344443 268899999
Q ss_pred CCCCeEE-Eeee------------------------------ecCcE-EEEEECCCCCEEEEEeCCce------------
Q 000992 104 VDGNATE-VVGR------------------------------VEGGV-RFISPSPDGDLLGVTTGFGQ------------ 139 (1196)
Q Consensus 104 ~~~~~~e-~vg~------------------------------~~~~I-~~~awSPDg~~LA~~s~d~t------------ 139 (1196)
..+|++. .... -.+.+ ..++++|++.+|.+++++++
T Consensus 190 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~g 269 (689)
T 1yiq_A 190 AETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKG 269 (689)
T ss_dssp TTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCS
T ss_pred CCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCC
Confidence 9887653 1110 00111 26789999999999998875
Q ss_pred -------EEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc---eEEEeeccccccCCCCEEEEEE
Q 000992 140 -------ILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK---YFATLSEFCNSSKLHKRLKVWE 208 (1196)
Q Consensus 140 -------V~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~---~lAsvss~d~~~~~d~~irVWd 208 (1196)
|.-++ .+++.+-.......+ .... .............||+ .++ +++ .++.+.++|
T Consensus 270 d~~y~~~v~AlD~~TG~~~W~~~~~~~d-~wd~------~~~~~~~l~d~~~~G~~~~~v~-~~~------~~G~l~~lD 335 (689)
T 1yiq_A 270 DNLFLSSIVAVNADTGEYVWHYQTTPGD-AWDY------TATQHMILAELPIDGKPRKVLM-QAP------KNGFFYVID 335 (689)
T ss_dssp CCTTTTEEEEEETTTCCEEEEEESSTTC-CSCC------CCCSCEEEEEEEETTEEEEEEE-ECC------TTSEEEEEE
T ss_pred CceeeeeEEEEEccCCceeEeeecCCcc-cccc------cCCCCcEEEeeccCCcEEEEEE-EEC------CCCeEEEEE
Confidence 44433 122222111111000 0000 0001111112223665 566 443 468999999
Q ss_pred CCCCcEEEEeccCC-Cc--------------------------------------eeEEEEcCCCCeEEEEecCCC----
Q 000992 209 RDSGTLQASSELKA-FM--------------------------------------GAVLEWMPSGANIAAVYDRKS---- 245 (1196)
Q Consensus 209 ~~~G~l~~~~e~~~-~~--------------------------------------v~slawsPdG~~IAs~s~d~~---- 245 (1196)
+.+|+++...+-.. .+ -..++++|+..++.+...+..
T Consensus 336 ~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~ 415 (689)
T 1yiq_A 336 RATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYE 415 (689)
T ss_dssp TTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEE
T ss_pred CCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeee
Confidence 99999985322100 00 124799999888877643210
Q ss_pred --CC---------------------------------CCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 246 --EN---------------------------------KCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 246 --~~---------------------------------~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
.. -...|.-||. +|...-++.... .+..-.++..|.++.+
T Consensus 416 ~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~ 491 (689)
T 1yiq_A 416 HIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFE 491 (689)
T ss_dssp CCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEE
T ss_pred eccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEE
Confidence 00 0145777885 455443332221 2333466778889999
Q ss_pred EEccCCcceEEEEEecCCE
Q 000992 290 VVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n~~ 308 (1196)
++.|+ .++.||..+.+
T Consensus 492 gt~dg---~l~a~D~~tG~ 507 (689)
T 1yiq_A 492 GSADG---RVIAYAADTGE 507 (689)
T ss_dssp ECTTS---EEEEEETTTCC
T ss_pred ECCCC---cEEEEECCCCc
Confidence 98888 89999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0049 Score=71.82 Aligned_cols=166 Identities=7% Similarity=0.007 Sum_probs=111.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
+..+.+....|+|++|+..|.++ .+... -....++.+. +.|++|++.+ .+|. ...++...|..+...
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKND-NTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 44455667789999999998764 22211 1223445667 8888888877 1222 245677788888899
Q ss_pred cCHHHHHHHHHhCCC----HHHH----------------HHHHHHcCCHHHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSS----LEKA----------------MKAYRASGNWSGVLTVAGLL----KLGKDEVAKLAQELCEE 1059 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~----~~kA----------------l~~y~~~g~w~~al~la~~l----~~~~~~~~~l~~~la~~ 1059 (1196)
+++++|...|.++-. ...+ ..+|...|+|++|+.+..+. +.++.....+...+|..
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 999999998887621 1111 56778888888888655442 22222224567788889
Q ss_pred HHHcCChHHHHHHHHHhc----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1060 LQALGKPGEAAKIALDYC----GD---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1060 L~~~~~~~eAa~i~~~yl----~d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+...|++.+|...|.+.+ ++ .-....+|.+.++|++|+....+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999887743 12 23345678888999999876654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0025 Score=75.53 Aligned_cols=157 Identities=11% Similarity=-0.020 Sum_probs=97.9
Q ss_pred CCEEEEEEcc-CCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-Cc----eEEEEeccCce
Q 000992 76 DSITAFDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FG----QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~----tV~l~~~~~d~ 149 (1196)
..+..|+++| ++..|.++...+.|..+|.+++.+..+.........++|+|||++|.++.. ++ .+...++....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 4678999998 466677766668899999998877644333456889999999996666653 21 23333333222
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeE
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAV 227 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~s 227 (1196)
.....+... .....+++.| +|.+++ +.. ....|.+++..++...... .+....-..
T Consensus 217 ~~~~~l~~~---------------~~p~giavdp~~g~lyv-~d~------~~~~V~~~~~~~~~~~~~~~~~~~~~P~g 274 (430)
T 3tc9_A 217 KVITELTKG---------------QNCNGAETHPINGELYF-NSW------NAGQVFRYDFTTQETTPLFTIQDSGWEFH 274 (430)
T ss_dssp CSEEEEEEC---------------SSCCCEEECTTTCCEEE-EET------TTTEEEEEETTTTEEEEEEECSSSSCCEE
T ss_pred eeeeeeccC---------------CCceEEEEeCCCCEEEE-EEC------CCCEEEEEECCCCcEEEEEEcCCCCccee
Confidence 110111100 1235788999 777666 332 3578999999555542222 222234578
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
|+|+|+|++|..+... .+.|..++.+|
T Consensus 275 ia~~pdG~~lyv~d~~-----~~~I~~~~~d~ 301 (430)
T 3tc9_A 275 IQFHPSGNYAYIVVVN-----QHYILRSDYDW 301 (430)
T ss_dssp EEECTTSSEEEEEETT-----TTEEEEEEEET
T ss_pred EEEcCCCCEEEEEECC-----CCEEEEEeCCc
Confidence 9999999966555443 35787777654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0065 Score=67.69 Aligned_cols=167 Identities=9% Similarity=0.021 Sum_probs=109.1
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
....+.+...+|+|++|++.|.++ .+...+ ..-...... +.|++|++.+ .+|. ...++..+|..+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 445567778899999999998875 222211 122334566 7888888877 2332 34567788888888
Q ss_pred ccCHHHHHHHHHhCCC----HHH----------------HHHHHHHcCCHHHHHHHHhhc----CCCHHHHHHHHHHHHH
Q 000992 1003 VKCFEDAATTYFCCSS----LEK----------------AMKAYRASGNWSGVLTVAGLL----KLGKDEVAKLAQELCE 1058 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag~----~~k----------------Al~~y~~~g~w~~al~la~~l----~~~~~~~~~l~~~la~ 1058 (1196)
.+++++|...|.++-. ... ...+|...|++++|+....+. +.++.-.......+|.
T Consensus 201 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICH 280 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 9999999888877621 111 145577788888888655432 2222222345666888
Q ss_pred HHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1059 ELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+...|++.+|...|.+.+. ++ -....+|.+.++|++|+....+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88889999999988877432 22 2345667788888888765443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0031 Score=76.64 Aligned_cols=160 Identities=7% Similarity=-0.128 Sum_probs=80.3
Q ss_pred cHHHHhhCHHHHHHHHHHc---CCCc---HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHH
Q 000992 939 TIDLRLQRFENALKHIVSM---GDSY---HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFE 1007 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~---g~~~---~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~ 1007 (1196)
.+....|++++|++.|.++ .+.. +......+.++ +.|++|+++| .+|. ....+...|.-+...++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE-GEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHH
Confidence 3444556667776666643 2211 12223344555 6666666665 1221 2234444555556666666
Q ss_pred HHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 1008 DAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-------KLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1008 eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-------~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
+|..+|.++-. +.....+|.+.|++++|+.+..+. +.+++........++..+...|++++|.++
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666655411 223335555566666665544332 112222234555666666666666666666
Q ss_pred HHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1073 ALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1073 ~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
|.+.+. + ...-..+|.+.++|++|....
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 655321 2 123345566666666665544
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.057 Score=61.04 Aligned_cols=186 Identities=15% Similarity=0.091 Sum_probs=106.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCC-eEEEeee----ecCcEEEEEECCCCCEEEEEeCCceEEEEe---ccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGN-ATEVVGR----VEGGVRFISPSPDGDLLGVTTGFGQILVMT---HDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~-~~e~vg~----~~~~I~~~awSPDg~~LA~~s~d~tV~l~~---~~~ 147 (1196)
..+.+|.|.+++..++ ++..|.| +...+++ ..+.+.. ....+.+++|+| ++..+ ++..+.|..-+ +.|
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~S~DgG~tW 111 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLHTTDGGQSW 111 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEEESSTTSSC
T ss_pred CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEEECCCCCCc
Confidence 4689999988888777 5567765 4556654 3343321 134689999987 45554 45566554321 224
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCcee
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGA 226 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~ 226 (1196)
..+.... .....+..|.+.+++..+| ++. ....+|-+| .|+ -.....+..+.+.
T Consensus 112 ~~~~~~~----------------~~~~~~~~i~~~~~~~~~~-~~~------~g~v~~S~D--gG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 112 SQIPLDP----------------KLPGSPRLIKALGNGSAEM-ITN------VGAIYRTKD--SGKNWQALVQEAIGVMR 166 (327)
T ss_dssp EECCCCT----------------TCSSCEEEEEEEETTEEEE-EET------TCCEEEESS--TTSSEEEEECSCCCCEE
T ss_pred eECcccc----------------CCCCCeEEEEEECCCCEEE-EeC------CccEEEEcC--CCCCCEEeecCCCcceE
Confidence 3322100 0112357788888898887 553 112334333 243 3333345556678
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEE-EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVF-YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~-~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
.+++.|+|.++|.+... .+.. .+..|..-... ..+....+..++++|++++++++ .++ .+.+++
T Consensus 167 ~~~~~~~~~~~~~g~~G-------~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~G---~~~~s~ 231 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRG-------SFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMIV-NGG---KIAFSD 231 (327)
T ss_dssp EEEECTTSCEEEEETTS-------SEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEEE-TTT---EEEEEE
T ss_pred EEEEcCCCcEEEEECCC-------cEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEEEe-CCc---eEEEec
Confidence 99999999999877542 2322 22213221211 12223568899999999877654 455 566654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0087 Score=68.79 Aligned_cols=21 Identities=14% Similarity=-0.061 Sum_probs=14.0
Q ss_pred cccHHHHhhCHHHHHHHHHHc
Q 000992 937 RYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
.+.+...+|+|++|+.+|.++
T Consensus 132 l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 345666677777777776654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0048 Score=68.77 Aligned_cols=177 Identities=12% Similarity=0.016 Sum_probs=111.5
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcccccc
Q 000992 87 KEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 87 ~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
+..|.+++.+|.|..+|..+...-........+.++...+||. |.+++.++.|..++............
T Consensus 107 ~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~---------- 175 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGTEKWRFKTN---------- 175 (330)
T ss_dssp TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSCEEEEEECS----------
T ss_pred CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCCEeEEEecC----------
Confidence 5567788889999999998433222222234466778888887 45577778888776543333222211
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
...+.++...++|..++ ++ +.|..||. +|+...........+.+++..++|++.+++..
T Consensus 176 ------~~~~~~~~~d~~g~l~v--~t--------~~l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~---- 234 (330)
T 3hxj_A 176 ------DAITSAASIGKDGTIYF--GS--------DKVYAINP-DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLD---- 234 (330)
T ss_dssp ------SCCCSCCEECTTCCEEE--ES--------SSEEEECT-TSCEEEEECCSSCCCSCCEECTTSCEEEEETT----
T ss_pred ------CCceeeeEEcCCCEEEE--Ee--------CEEEEECC-CCcEEEEEccCCcceeceEECCCCeEEEEcCC----
Confidence 12345667778898776 32 35778895 88888776655566788999999987776532
Q ss_pred CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 247 NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..|..++.+|.....+... ...+..+...++|.+ .+++.++ .|..++..
T Consensus 235 ---~gl~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l-~v~t~~g---gl~~~d~~ 283 (330)
T 3hxj_A 235 ---GHLYAINPDGTEKWRFKTG---KRIESSPVIGNTDTI-YFGSYDG---HLYAINPD 283 (330)
T ss_dssp ---TEEEEECTTSCEEEEEECS---SCCCSCCEECTTSCE-EEECTTC---EEEEECTT
T ss_pred ---CeEEEECCCCCEeEEeeCC---CCccccceEcCCCeE-EEecCCC---CEEEECCC
Confidence 3577778888665444322 122334556667754 4555554 47777753
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0016 Score=67.01 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=93.2
Q ss_pred HhhcChHHHHHHHHhccChhHHHHHHHHhcCCcchhhHHHHHHhcCChhhhc-ccHHHHhhCHHHHHHHHHHcCCCcHHH
Q 000992 886 LWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEFLPYLQELESMPPLLMR-YTIDLRLQRFENALKHIVSMGDSYHAD 964 (1196)
Q Consensus 886 ~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~DpkeYlpfL~~L~~l~~~~~r-~~Id~~L~ry~~Al~~l~~~g~~~~~~ 964 (1196)
-|..|.+.=|+-||..=|++.|+.+|+.. .++. .|++ .+.... .|. ++.
T Consensus 3 ~~~~D~~~rF~LAL~lg~l~~A~e~a~~l-~~~~--------------~Wk~Lg~~AL~-------------~gn--~~l 52 (177)
T 3mkq_B 3 QFVQDPHIRFDLALEYGNLDAALDEAKKL-NDSI--------------TWERLIQEALA-------------QGN--ASL 52 (177)
T ss_dssp TTSSCHHHHHHHHHHTTCHHHHHHHHHHH-CCHH--------------HHHHHHHHHHH-------------TTC--HHH
T ss_pred cccCChHHHHHHHHhcCCHHHHHHHHHHh-CCHH--------------HHHHHHHHHHH-------------cCC--hHH
Confidence 35678888999999999999998888765 2221 1211 222222 333 566
Q ss_pred HHHHHHHHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh
Q 000992 965 CLNLMKKYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 965 ale~~~~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~ 1041 (1196)
|.+.+.+. +.|...+=|| ++.+.+. ..|+--+.++++.-|+..|...|++++++++|.+.|+|.+|...|+.
T Consensus 53 Ae~cy~~~-~D~~~L~~Ly~~tg~~e~L~----kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t 127 (177)
T 3mkq_B 53 AEMIYQTQ-HSFDKLSFLYLVTGDVNKLS----KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKA 127 (177)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHTCHHHHH----HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHh-CCHHHHHHHHHHhCCHHHHH----HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHH
Confidence 66666666 7787777777 5665555 45577788999999999999999999999999999999999999998
Q ss_pred cCC
Q 000992 1042 LKL 1044 (1196)
Q Consensus 1042 l~~ 1044 (1196)
+++
T Consensus 128 ~g~ 130 (177)
T 3mkq_B 128 NGD 130 (177)
T ss_dssp TTC
T ss_pred cCc
Confidence 774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0021 Score=71.42 Aligned_cols=53 Identities=17% Similarity=-0.093 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcC------C--------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALDYCG------D--------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d--------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
......+|..+...|+|.+|...|.+-+. + .-....+|...+++++|+....+
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45677889999999999999999887431 1 13345678888999999876655
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.029 Score=66.28 Aligned_cols=238 Identities=8% Similarity=-0.014 Sum_probs=131.5
Q ss_pred ceeEEeeecC--CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--
Q 000992 22 ILQFSALDIE--QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG-- 97 (1196)
Q Consensus 22 ~~~~~~~d~~--~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG-- 97 (1196)
.+.+++||++ .+.||++...+.|..+++ ..+... + +.. ....+.+|+++|+|+ |.++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~--~~g~v~----~----~~~----~~~~P~giavd~dG~-lyVad~~~~~ 204 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDF--VNQYVD----I----KTT----NIGQCADVNFTLNGD-MVVVDDQSSD 204 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEET--TTTEEE----E----ECC----CCSCEEEEEECTTCC-EEEEECCSCT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEEC--CCCEEE----E----eec----CCCCccEEEECCCCC-EEEEcCCCCc
Confidence 4678999995 788999865577999988 444321 1 111 235799999999999 55554322
Q ss_pred ---cEEEEECCCCeE--EEeeeecCcEEEEEECC-CCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccc
Q 000992 98 ---LLLLHSVDGNAT--EVVGRVEGGVRFISPSP-DGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS 170 (1196)
Q Consensus 98 ---~I~lw~~~~~~~--e~vg~~~~~I~~~awSP-Dg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~ 170 (1196)
.+...+..++.. ..+.. -..-..++++| +|.+.++-..++.|..++.. ........ ....
T Consensus 205 ~~~gv~~~~~~~~~~~~~~~~~-~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~~~----------- 271 (433)
T 4hw6_A 205 TNTGIYLFTRASGFTERLSLCN-ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MMDT----------- 271 (433)
T ss_dssp TSEEEEEECGGGTTCCEEEEEE-CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-ECSC-----------
T ss_pred ccceEEEEECCCCeeccccccc-cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-ccCC-----------
Confidence 233344433211 12221 23346688999 67766655567778776543 22211111 1000
Q ss_pred cCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CCcEE--EEec---cCCC------------ceeEEEE-
Q 000992 171 SSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SGTLQ--ASSE---LKAF------------MGAVLEW- 230 (1196)
Q Consensus 171 ~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G~l~--~~~e---~~~~------------~v~slaw- 230 (1196)
...-..|+|+|||++|- ++. ...+.|+.++.+ +|.+. .+.. +..+ .-..+++
T Consensus 272 --~~~~~~ia~dpdG~~LY-vad-----~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~ 343 (433)
T 4hw6_A 272 --KGSNFHIVWHPTGDWAY-IIY-----NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFV 343 (433)
T ss_dssp --CSSCEEEEECTTSSEEE-EEE-----TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEE
T ss_pred --CCCcccEEEeCCCCEEE-EEe-----CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEE
Confidence 01124699999999554 332 245788887753 34321 1111 1111 2356999
Q ss_pred --------cCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc-------CC-------CCcEEEEEEc-cCCCee
Q 000992 231 --------MPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE-------QI-------DSTVELLKWN-CMSDLL 287 (1196)
Q Consensus 231 --------sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~-------~~-------~~~V~~laWS-pDg~~L 287 (1196)
.++|++..+-.. .+.|+.++.+|.....+-... .+ -.....|+++ ++|.+.
T Consensus 344 ~n~~y~~dd~~g~lyvaD~~------n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~ly 417 (433)
T 4hw6_A 344 KNEAYAGEEDEYDFYFCDRD------SHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFY 417 (433)
T ss_dssp ECGGGTTSSCCEEEEEEETT------TTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEE
T ss_pred ccccccccCCCCcEEEEECC------CCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEE
Confidence 778876655332 468999998885432110000 00 0236789999 566554
Q ss_pred EEEEccCCcceEEEEEe
Q 000992 288 AAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~ 304 (1196)
.+=.... .|+..+.
T Consensus 418 VaD~~n~---rIr~i~~ 431 (433)
T 4hw6_A 418 IGDCDNH---RVRKIAP 431 (433)
T ss_dssp EEEGGGT---EEEEEEE
T ss_pred EEeCCCC---EEEEEec
Confidence 4433333 6666654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0021 Score=78.10 Aligned_cols=195 Identities=11% Similarity=0.020 Sum_probs=110.2
Q ss_pred ceeEEee-e-cCCCEEEEEeCC------------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEE
Q 000992 22 ILQFSAL-D-IEQNRLFFASSA------------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAF 81 (1196)
Q Consensus 22 ~~~~~~~-d-~~~~~l~~~s~~------------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v 81 (1196)
.+.++++ . +++..||+.++. +.+-.+|. .+.+..++|. . ++..-.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~--~t~~v~~qI~---V---------gg~pd~~ 200 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA--DKWEVAWQVL---V---------SGNLDNC 200 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET--TTTEEEEEEE---E---------SSCCCCE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC--CCCeEEEEEE---e---------CCCccce
Confidence 5677887 4 899999998632 23445565 3333333332 1 1234567
Q ss_pred EEccCCCEEEEEECCC--------------------------------------cEEEEECCC--C-e-EEEeeeecCcE
Q 000992 82 DYLMEKEALIVGTSSG--------------------------------------LLLLHSVDG--N-A-TEVVGRVEGGV 119 (1196)
Q Consensus 82 ~~spd~~~La~as~dG--------------------------------------~I~lw~~~~--~-~-~e~vg~~~~~I 119 (1196)
+.+|||+.+.+++.+. .|.+.|..+ + . +..+. .....
T Consensus 201 ~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~P 279 (595)
T 1fwx_A 201 DADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNP 279 (595)
T ss_dssp EECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSC
T ss_pred EECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCc
Confidence 7899999998888553 467777765 2 2 22221 12345
Q ss_pred EEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc
Q 000992 120 RFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS 197 (1196)
Q Consensus 120 ~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~ 197 (1196)
.++.+||||+++.+++ .+++|.+.+-. .+....-.+.... ..+.+ . .-..+-..++|+|||..+. +..
T Consensus 280 hGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~--~v~~~--v-~vG~gP~h~aF~~dG~aY~-t~~---- 349 (595)
T 1fwx_A 280 HGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS--AVVAE--P-ELGLGPLHTAFDGRGNAYT-SLF---- 349 (595)
T ss_dssp CCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG--GEEEC--C-BCCSCEEEEEECTTSEEEE-EET----
T ss_pred eEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc--ceEEE--c-CCCCCcceEEECCCCeEEE-EEe----
Confidence 6789999999887775 57788776522 1000000010000 00000 0 0112457899999993333 343
Q ss_pred cCCCCEEEEEECCC----------CcEEEEeccCCCce-----eEEEEcCCCCeEEEEecC
Q 000992 198 SKLHKRLKVWERDS----------GTLQASSELKAFMG-----AVLEWMPSGANIAAVYDR 243 (1196)
Q Consensus 198 ~~~d~~irVWd~~~----------G~l~~~~e~~~~~v-----~slawsPdG~~IAs~s~d 243 (1196)
-+.+|-+||.++ .+.+.+..-+-... ..++.+|||+++.++...
T Consensus 350 --ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 350 --LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp --TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred --cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 358899999855 34555544322111 223458999999888653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.16 Score=57.78 Aligned_cols=234 Identities=9% Similarity=0.010 Sum_probs=119.3
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e 110 (1196)
+++.||+++.++.++.+|. .+++..|+.. ++.... ........+. -....++..+.+++.+|.|..+|..+++..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~--~tG~~~W~~~-~~~~~~-~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNA--DDGKEIWSVS-LAEKDG-WFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGTVA 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEE-CCC----CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCCEE
T ss_pred ECCEEEEEcCCCeEEEEEc--cCCceeeeec-Cccccc-cccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCCEE
Confidence 4789999998888999999 6777666653 111100 0000011222 222335677888999999999999887653
Q ss_pred -EeeeecCcEEE-EEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 111 -VVGRVEGGVRF-ISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 111 -~vg~~~~~I~~-~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
... ....+.+ ... ++..|.+++.++.|..++. +++.+-......... .. ... ....+. +|..
T Consensus 127 W~~~-~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--~~-----~~~--~~~~~~---~~~v 191 (376)
T 3q7m_A 127 WQTK-VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--SL-----RGE--SAPTTA---FGAA 191 (376)
T ss_dssp EEEE-CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------------CCC--CCCEEE---TTEE
T ss_pred EEEe-CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce--ee-----cCC--CCcEEE---CCEE
Confidence 111 1111111 111 2457777888888877763 444332222211000 00 000 111122 4544
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcEEEEeccCC--Cc-----eeEEEEcC--CCCeEEEEecCCCCCCCCeEEEEeC-
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--FM-----GAVLEWMP--SGANIAAVYDRKSENKCPSIVFYER- 257 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--~~-----v~slawsP--dG~~IAs~s~d~~~~~~~~V~~~e~- 257 (1196)
++ ++ .++.+..+|..+|+......... +. ...+.-+| .+..|..++.+ ..|..++.
T Consensus 192 ~~--g~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~------g~l~~~d~~ 257 (376)
T 3q7m_A 192 VV--GG------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN------GNLTALDLR 257 (376)
T ss_dssp EE--CC------TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT------SCEEEEETT
T ss_pred EE--Ec------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC------cEEEEEECC
Confidence 44 43 35789999998999887654211 00 00011122 23444444443 34777774
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|...-.+ +. .....+.. ++..|.+++.++ .|..++..+.+
T Consensus 258 tG~~~w~~--~~---~~~~~~~~--~~~~l~~~~~~g---~l~~~d~~tG~ 298 (376)
T 3q7m_A 258 SGQIMWKR--EL---GSVNDFIV--DGNRIYLVDQND---RVMALTIDGGV 298 (376)
T ss_dssp TCCEEEEE--CC---CCEEEEEE--ETTEEEEEETTC---CEEEEETTTCC
T ss_pred CCcEEeec--cC---CCCCCceE--ECCEEEEEcCCC---eEEEEECCCCc
Confidence 56543322 21 12333332 455666666665 68888876643
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.017 Score=68.33 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=93.4
Q ss_pred CCEEEEEEccC--CCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC---c-eEEEEeccCce
Q 000992 76 DSITAFDYLME--KEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF---G-QILVMTHDWDL 149 (1196)
Q Consensus 76 ~~v~~v~~spd--~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d---~-tV~l~~~~~d~ 149 (1196)
..+.+|+|.|+ ...|.++...+.|+.+++.++.+..+.........++|+|||++.++-... . .+.........
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 45789999995 455655554489999999888776443334568999999999944443321 1 13222221111
Q ss_pred eeeeecccccCccccccCccccCCCCeEEEEEcc-CCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCcee
Q 000992 150 LYENPLEELAEGFDVHEPELSSSFSFKSPISWRG-DGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMGA 226 (1196)
Q Consensus 150 ~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWsp-DG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v~ 226 (1196)
.....+.. -..-..+++.| +|.+++ +.. ..+.|+.++..+|...... .+...+..
T Consensus 219 ~~~~~~~~---------------~~~P~giavd~~~G~lyv-~d~------~~~~V~~~d~~~g~~~~~~~~~~~~~~~~ 276 (433)
T 4hw6_A 219 TERLSLCN---------------ARGAKTCAVHPQNGKIYY-TRY------HHAMISSYDPATGTLTEEEVMMDTKGSNF 276 (433)
T ss_dssp CCEEEEEE---------------CSSBCCCEECTTTCCEEE-CBT------TCSEEEEECTTTCCEEEEEEECSCCSSCE
T ss_pred eccccccc---------------cCCCCEEEEeCCCCeEEE-EEC------CCCEEEEEECCCCeEEEEEeccCCCCCcc
Confidence 00000000 01225688999 787666 332 3578999999668763222 12223345
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
.|+|+|+|+.|..+... .+.|..++.+
T Consensus 277 ~ia~dpdG~~LYvad~~-----~~~I~~~~~d 303 (433)
T 4hw6_A 277 HIVWHPTGDWAYIIYNG-----KHCIYRVDYN 303 (433)
T ss_dssp EEEECTTSSEEEEEETT-----TTEEEEEEBC
T ss_pred cEEEeCCCCEEEEEeCC-----CCEEEEEeCC
Confidence 79999999966555443 3578777755
|
| >2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0018 Score=75.48 Aligned_cols=143 Identities=10% Similarity=0.205 Sum_probs=112.9
Q ss_pred cccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHH-HHHHHHHHHHHhcccCHHHHHHHH
Q 000992 937 RYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKM-EQVLEAWADHLSDVKCFEDAATTY 1013 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~-~~i~~~~A~~L~~~~~~~eAa~~y 1013 (1196)
.|.|+ ...++.+....=.|+ ++.|++...+. ++|.+||-|. .+++.+ +.+...|=..-..+..| -+.+..
T Consensus 139 ~~~i~---~~~d~~I~~aLl~Gd--~e~AV~~cl~~-~r~adAllLA~~gg~el~~~~vq~~Y~~k~~~~~~~-~rll~~ 211 (399)
T 2pm7_A 139 DFSLS---GNIEQTISKNLVSGN--IKSAVKNSLEN-DLMMEAMVIALDSNNERLKESVKNAYFAKYGSKSSL-SRILYS 211 (399)
T ss_dssp CBCCC---SHHHHHHHHHHHTTC--HHHHHHHHHTT-TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTSCHH-HHHHHH
T ss_pred CCcCC---hhHHHHHHHHHHcCC--HHHHHHHHHHC-CChHHHHHHHHhcCHHHHHHHHHHHHHHhcccCchH-HHHHHH
Confidence 35552 345666666555677 89999999999 9999999998 888888 77776666555443344 445778
Q ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCHHHHHHHHHH
Q 000992 1014 FCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD--EVAKLAQELCEELQALGKPGEAAKIALDYCGDVTNGISLLID 1089 (1196)
Q Consensus 1014 ~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~--~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~~~Ai~~y~~ 1089 (1196)
...++++..+... ...+|++++.+.-.+. +++ +...++..|+++|...|+..+|--+|+= +|+++..+.+..+
T Consensus 212 iv~~n~~d~V~~~-~l~~WkE~La~i~t~a-~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~-Ag~~dk~v~iW~~ 286 (399)
T 2pm7_A 212 ISKREVDDLVENL-DVSQWKFISKAIQNLY-PNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLA-AGSLDKVASIWLS 286 (399)
T ss_dssp HHTTCCHHHHHHB-CGGGHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHccCHHHHHhcC-ChhhHHHHHHHHHhcC-CccHhHHHHHHHHHHHHHHhCCChhhhhHHHHh-hCCHHHHHHHHHH
Confidence 8889999877764 3557999998877665 567 8899999999999999999888888887 9999999999877
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.023 Score=62.19 Aligned_cols=31 Identities=13% Similarity=-0.014 Sum_probs=17.5
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+.....++...|..+...+++++|..+|.++
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344455556666666666666666555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.017 Score=66.16 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.4
Q ss_pred cccHHHHhhCHHHHHHHHHHc
Q 000992 937 RYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
++.+....|+|++|+.+|.++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~a 129 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKA 129 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 456666778888888887765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.004 Score=71.34 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=105.0
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
..+...+|+|++|++.|.++ .++.. ...-..+... +.|++|++.| .+|. ....+..+|..+...+++
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCH
Confidence 45556678999999888765 22211 1112233455 6677777776 2443 345667788899999999
Q ss_pred HHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1007 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1007 ~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
++|...|.++-. +.....+|...|++++|+....+. ..+++. .+....++..+...|++.+|...|.+.+
T Consensus 220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999888876521 122345677788888887655432 112211 2456778888889999999999887743
Q ss_pred C----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 G----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 ~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
. + ...-..+|.+.+++++|+....+
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 2 23345678888899999877655
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.048 Score=61.65 Aligned_cols=220 Identities=10% Similarity=0.097 Sum_probs=124.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++++++ +.+|++.+.+.|+.- . ..++ .|+....+. -.| +.+..|.+.+++..++.+ .+|.|..
T Consensus 81 ~~~~i~~~~--~~~~~~g~~g~i~~S-~--DgG~-tW~~~~~~~------~~~-~~~~~i~~~~~~~~~~~~-~~g~v~~ 146 (327)
T 2xbg_A 81 RFNSVSFQG--NEGWIVGEPPIMLHT-T--DGGQ-SWSQIPLDP------KLP-GSPRLIKALGNGSAEMIT-NVGAIYR 146 (327)
T ss_dssp EEEEEEEET--TEEEEEEETTEEEEE-S--STTS-SCEECCCCT------TCS-SCEEEEEEEETTEEEEEE-TTCCEEE
T ss_pred cEEEEEecC--CeEEEEECCCeEEEE-C--CCCC-CceECcccc------CCC-CCeEEEEEECCCCEEEEe-CCccEEE
Confidence 567777875 667877777766652 2 2222 244321110 011 357788888888766654 5676533
Q ss_pred EECCCC-eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe----ccCceeeeeecccccCccccccCccccCCCC
Q 000992 102 HSVDGN-ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT----HDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 102 w~~~~~-~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~----~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
..+++ ..+ ........+.+++++|+|.++|.+.. +.+..-+ ..|..+.. +....
T Consensus 147 -S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d~gG~tW~~~~~------------------~~~~~ 206 (327)
T 2xbg_A 147 -TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWEPGQTAWEPHNR------------------TTSRR 206 (327)
T ss_dssp -ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEEEECTTCSSCEEEEC------------------CSSSC
T ss_pred -EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEEEeCCCCCceeECCC------------------CCCCc
Confidence 34433 344 22223567999999999998876644 4444321 23444311 11235
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-c---CCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-L---KAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
+..+.+.++|+.++ ++. ++.+++++.+.|+.-.... + ....+.+++|.|+++++|++.. ..
T Consensus 207 ~~~~~~~~~g~~~~-~~~-------~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-------g~ 271 (327)
T 2xbg_A 207 LHNMGFTPDGRLWM-IVN-------GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-------GA 271 (327)
T ss_dssp EEEEEECTTSCEEE-EET-------TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST-------TC
T ss_pred cceeEECCCCCEEE-EeC-------CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC-------Ce
Confidence 67899999999887 543 3677776542344322211 2 1123688999999999888754 23
Q ss_pred EEEEeCC-CeeEEEEEecc--CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 252 IVFYERN-GLERSSFDINE--QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~--~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
| ++..+ |..-. .+.. .....+..|.|.++++++|++ .++
T Consensus 272 i-~~S~DgG~tW~--~~~~~~~~~~~~~~v~~~~~~~~~~~G-~~G 313 (327)
T 2xbg_A 272 L-LCSQDGGQTWQ--QDVDVKKVPSNFYKILFFSPDQGFILG-QKG 313 (327)
T ss_dssp E-EEESSTTSSCE--ECGGGTTSSSCCCEEEEEETTEEEEEC-STT
T ss_pred E-EEeCCCCcccE--EcCccCCCCCCeEEEEEECCCceEEEc-CCc
Confidence 4 45444 32211 1221 112457889998777755554 555
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0077 Score=73.07 Aligned_cols=163 Identities=11% Similarity=-0.044 Sum_probs=115.9
Q ss_pred cccHHHHhhCHHHHHHHHHHc---CC---CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000992 937 RYTIDLRLQRFENALKHIVSM---GD---SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~---g~---~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
...+....|+|++|++.|.++ ++ .-.......+.+. +.+++|++++ .+|. ...++...|..+...++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhcc
Confidence 345556788999999998875 22 1234455666788 8999999888 2332 34566678899999999
Q ss_pred HHHHHHHHHhCC--------CHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1006 FEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1006 ~~eAa~~y~~ag--------~~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+++|..+|.++- -+-....+|.+.|+|++|+.+..+. ...++. ......++..+...|++++|.++|.+.
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-HLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-SHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998752 1234457888899999999766542 112222 245667888889999999999998874
Q ss_pred c----CC---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1077 C----GD---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1077 l----~d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+ .+ ....+.+|++.++|++|+.+..+
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 500 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 23 34567788999999999876554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.022 Score=63.25 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=102.6
Q ss_pred CcchhhHHHHHHhcCC-hh-----hhcccHHHHhhCHHHHHHHHHHcCCCcHHHH----HHHHHHHhcChHHHHhhc---
Q 000992 917 DPKEFLPYLQELESMP-PL-----LMRYTIDLRLQRFENALKHIVSMGDSYHADC----LNLMKKYAQLFPLGLKLI--- 983 (1196)
Q Consensus 917 DpkeYlpfL~~L~~l~-~~-----~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~a----le~~~~~~~ly~~AL~L~--- 983 (1196)
+..+=+.+++++.... ++ +-.+..-.-+|+|++|+..+....++ .-.+ .+++... +.+++|++.+
T Consensus 14 ~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~-~~~a~~~la~~~~~~-~~~~~A~~~l~~l 91 (291)
T 3mkr_A 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAP-ELQAVRMFAEYLASH-SRRDAIVAELDRE 91 (291)
T ss_dssp CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCH-HHHHHHHHHHHHHCS-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCCh-hHHHHHHHHHHHcCC-CcHHHHHHHHHHH
Confidence 3333355555555552 22 11234555577888888777554321 1222 2344555 6677777766
Q ss_pred --C--CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHH---HHHHHHHHcCCHHHHHHHHhhc-CCCHHH-HHHHHH
Q 000992 984 --T--DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE---KAMKAYRASGNWSGVLTVAGLL-KLGKDE-VAKLAQ 1054 (1196)
Q Consensus 984 --~--d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~---kAl~~y~~~g~w~~al~la~~l-~~~~~~-~~~l~~ 1054 (1196)
. +|.. ..++...|.-+...|++++|...|.+.++.+ ....+|.+.|++++|....++. ..+++. ...++.
T Consensus 92 l~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~ 170 (291)
T 3mkr_A 92 MSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLAT 170 (291)
T ss_dssp HHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH
Confidence 1 2433 3556677788888888888888888744332 1226777778888877654432 111221 122333
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHH
Q 000992 1055 ELCEELQALGKPGEAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1055 ~la~~L~~~~~~~eAa~i~~~yl~----d~~---~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.+...+...|++.+|..+|.+-+. ++. ....+|.+.++|++|.....
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344445556788888888776332 222 23346778888888876543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.047 Score=61.95 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHHHHHHHhh-------cC
Q 000992 985 DPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSGVLTVAGL-------LK 1043 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~al~la~~-------l~ 1043 (1196)
++.....++...|..+...++|++|...|.++-.. .....+|...|++++|+....+ .+
T Consensus 182 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 261 (406)
T 3sf4_A 182 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc
Confidence 44455566777777777777777777776655211 1122445555665555543332 22
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1044 LGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1044 ~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..........+|..+...|++.+|...|.+
T Consensus 262 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 262 -DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 2222234555666666667777776666554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.059 Score=61.88 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=105.9
Q ss_pred ceeEEeeecCCCEEEEEe-------------CCCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEEcc--
Q 000992 22 ILQFSALDIEQNRLFFAS-------------SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDYLM-- 85 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-------------~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~sp-- 85 (1196)
.+.+++++++ ..+|++| .++.|+.+|+ ........ .|. +.+.++.+ ...+..|.+.+
T Consensus 51 G~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~--~~~~~~~~--~l~--~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 51 GSEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDL--NEKEPAVS--ELE--IIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CCCEEEECTT-SEEEEEECCC-----------CCEEEEEET--TSSSCCEE--ECE--EECSSCCGGGCCEEEEEEEECT
T ss_pred CcceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEec--CCCCCceE--EEE--ccCCCCCcCceeeeeeEEEECC
Confidence 4778889885 5677776 5778999998 32221111 111 22210111 23788898877
Q ss_pred CCC-EEEEEEC---CCcEEEEE--CCCCeEEEeeeec----CcEEEEEECCCCCEEEEEeC---C--------------c
Q 000992 86 EKE-ALIVGTS---SGLLLLHS--VDGNATEVVGRVE----GGVRFISPSPDGDLLGVTTG---F--------------G 138 (1196)
Q Consensus 86 d~~-~La~as~---dG~I~lw~--~~~~~~e~vg~~~----~~I~~~awSPDg~~LA~~s~---d--------------~ 138 (1196)
|+. .|.++.. +++|.+|+ .+++....+...+ ...+.++..|||...++... | +
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence 454 3444422 45666755 4455544443332 45889999999987776431 1 2
Q ss_pred eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEE-
Q 000992 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQA- 216 (1196)
Q Consensus 139 tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~- 216 (1196)
.|.-++. ..+. ..... + ..-..|+|||||+++- ++. +..++|.+|+.+ +|.+..
T Consensus 204 ~vyr~d~--~~~~-~~~~~------l---------~~pNGia~spDg~~lY-vad-----t~~~~I~~~~~~~~g~l~~~ 259 (355)
T 3sre_A 204 FVTYYSP--NDVR-VVAEG------F---------DFANGINISPDGKYVY-IAE-----LLAHKIHVYEKHANWTLTPL 259 (355)
T ss_dssp EEEEECT--TCCE-EEEEE------E---------SSEEEEEECTTSSEEE-EEE-----GGGTEEEEEEECTTSCEEEE
T ss_pred EEEEEEC--CeEE-EeecC------C---------cccCcceECCCCCEEE-EEe-----CCCCeEEEEEECCCCcEecC
Confidence 2322211 0000 00000 0 1237899999998776 443 235789998874 465432
Q ss_pred -EeccCCCceeEEEEcC-CCCeEEEEe
Q 000992 217 -SSELKAFMGAVLEWMP-SGANIAAVY 241 (1196)
Q Consensus 217 -~~e~~~~~v~slawsP-dG~~IAs~s 241 (1196)
.+ ...+....++..+ +|++.+++.
T Consensus 260 ~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 260 RVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred EEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 23 2356668899999 599877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.016 Score=66.20 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=109.6
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~~~a---le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
..+....|++++|+.+|.++ .++..+.. -...... +.|++|++.+ .+|. ...++...|.-+...+++
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-RIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCH
Confidence 45566788999999988765 33222111 1233556 7788887776 2443 235667788999999999
Q ss_pred HHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1007 EDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1007 ~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
++|...|.++-. +.....+|...|++++|+....+. ...+.. ......++..+...|++.+|...|.+.+
T Consensus 254 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 254 DLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999987621 223346778888888888655432 111222 2456778899999999999999998855
Q ss_pred CC-------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1078 GD-------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1078 ~d-------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.. ...-..+|.+.+++++|+....+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 23445678899999999876544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0011 Score=70.55 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGE 1068 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~e 1068 (1196)
..++...|..+...+++++|...|.++-....-.+++...|++++|+....+. ..++.. ......+|..+...|++.+
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK-AEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHhcCHHH
Confidence 67888899999999999999999988755444456788888888888766542 223433 4577889999999999999
Q ss_pred HHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1069 AAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1069 Aa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
|...|.+.+. + .-....+|.+.++|++|+....+
T Consensus 158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999887432 2 23456778899999999876654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0027 Score=74.01 Aligned_cols=165 Identities=13% Similarity=-0.021 Sum_probs=110.7
Q ss_pred hcccHHHHhhCHHHHHHHHHHcC---CCcH---HHH---------------HHHHHHHhcChHHHHhhc-----CCcHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSMG---DSYH---ADC---------------LNLMKKYAQLFPLGLKLI-----TDPAKM 989 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~g---~~~~---~~a---------------le~~~~~~~ly~~AL~L~-----~d~~~~ 989 (1196)
..+.+...+|+|++|++.|.++- ++.. +.. -..+.+. +.|++|++++ .+|. .
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~-~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS-GDYTAAIAFLDKILEVCVW-D 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC-C
Confidence 34566677899999999988762 2211 111 1124567 8899999888 2333 3
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHH-----
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLA----- 1053 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~----- 1053 (1196)
..++...|..+...+++++|...|.++-. +-....+|...|++++|+....+. ..+.......+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 45677889999999999999999988632 223446788889998888665432 11111111111
Q ss_pred ----HHHHHHHHHcCChHHHHHHHHHhc----CCH-------HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1054 ----QELCEELQALGKPGEAAKIALDYC----GDV-------TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1054 ----~~la~~L~~~~~~~eAa~i~~~yl----~d~-------~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
..++..+...|++.+|..+|.+.+ ++. .....+|.+.+++++|+....+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334888889999999999988743 222 2336788899999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.005 Score=68.83 Aligned_cols=86 Identities=17% Similarity=0.058 Sum_probs=50.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC------CH--
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG------DV-- 1080 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~------d~-- 1080 (1196)
.+.+|.. |++++|+++|. +|+.+....+ +..........+|..+...|+|.+|...|.+-+. +.
T Consensus 122 lg~~~~~-g~~~~A~~~~~------~Al~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQ------QAAAVFENEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHc-CCHHHHHHHHH------HHHHHHHhCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 3444444 55555555553 3344443332 2223345677888888899999999888877432 11
Q ss_pred -----HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1081 -----TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1081 -----~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
-....+|...+++++|+....+
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122455556888888776554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.03 Score=64.10 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=91.4
Q ss_pred cCCcchhhHHHHHHhcCChh----------hhcccHHHHhhCHHHHHHHHHHcCC------CcHHHHHH------HHHHH
Q 000992 915 QRDPKEFLPYLQELESMPPL----------LMRYTIDLRLQRFENALKHIVSMGD------SYHADCLN------LMKKY 972 (1196)
Q Consensus 915 q~DpkeYlpfL~~L~~l~~~----------~~r~~Id~~L~ry~~Al~~l~~~g~------~~~~~ale------~~~~~ 972 (1196)
.++|.+|-..|+.++..+.. +.++......|+|++|+.+|.++-. +....|.- .+...
T Consensus 75 ~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~ 154 (378)
T 3q15_A 75 YGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM 154 (378)
T ss_dssp -----CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc
Confidence 35677777788888765221 2234556678999999999887621 11222211 11233
Q ss_pred hcCh-------HHHHhhc-C--C-cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHH--------------HHHHHH
Q 000992 973 AQLF-------PLGLKLI-T--D-PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEK--------------AMKAYR 1027 (1196)
Q Consensus 973 ~~ly-------~~AL~L~-~--d-~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~k--------------Al~~y~ 1027 (1196)
+.| .+|++++ . + +.....++..+|.-+...++|++|...|.+|-+..+ .-.+|.
T Consensus 155 -~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 155 -KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD 233 (378)
T ss_dssp -TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 444 4445555 2 2 335566777888888888998888888876633211 124555
Q ss_pred HcCCHHHHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1028 ASGNWSGVLTVAGL-------LKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1028 ~~g~w~~al~la~~-------l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..|++++|+....+ .+ ++.. ......+|..+...|++.+|...+.+
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKV-PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHC-GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhC-ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66676666543332 12 2223 44566777778888888888777665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0029 Score=70.26 Aligned_cols=88 Identities=14% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHc-CChHHHHHHHHHhc------CC
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQAL-GKPGEAAKIALDYC------GD 1079 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~-~~~~eAa~i~~~yl------~d 1079 (1196)
..++.+|...|++++|+++|. +|+.+....+ +..........+|..+... |+|.+|...|.+-+ ++
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~------~Al~l~~~~g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLE------NAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHH------HHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 344555555555555555542 3333333333 2222334556777777775 88888887776633 22
Q ss_pred HH-------HHHHHHHHhcCHHHHHHHHH
Q 000992 1080 VT-------NGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1080 ~~-------~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.. ....+|++.++|++|+....
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYS 182 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 21 23566778888888876544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0012 Score=77.67 Aligned_cols=126 Identities=13% Similarity=0.024 Sum_probs=84.9
Q ss_pred hhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH---
Q 000992 944 LQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL--- 1019 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--- 1019 (1196)
+|+++++.+.+..-+...+...-+..-+. ++|+.|..+| .- .-+...|+=|...++|++|...|.++++.
T Consensus 107 lg~l~e~e~f~~~pn~~a~~~IGd~~~~~-g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~W 180 (449)
T 1b89_A 107 TNRLAELEEFINGPNNAHIQQVGDRCYDE-KMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKANSTRTW 180 (449)
T ss_dssp --CHHHHTTTTTCC-----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHH
T ss_pred hCCHHHHHHHHcCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcCCchhH
Confidence 57777766666543222344555566777 8999999998 32 25667788899999999999999999998
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC
Q 000992 1020 EKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD 1079 (1196)
Q Consensus 1020 ~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d 1079 (1196)
..++.+++..|+|+.|..+...+...++++ .++++.+.+.|++.||..++..-++.
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~~~ad~l----~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIVVHADEL----EELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTTTCHHHH----HHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhCHhhH----HHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 788899999999999988777665555543 35777888889999998887775543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.013 Score=62.82 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
......+|..+...|++.+|...|.+
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~ 194 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKE 194 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566777777777777777777665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.024 Score=63.02 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...+|..+...|++.+|...|.+
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444555554444433
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.21 Score=59.84 Aligned_cols=113 Identities=15% Similarity=0.151 Sum_probs=69.2
Q ss_pred ceeEEeeec-CCCEEEEEeCC-CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-------ccCCCEEEE
Q 000992 22 ILQFSALDI-EQNRLFFASSA-NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-------LMEKEALIV 92 (1196)
Q Consensus 22 ~~~~~~~d~-~~~~l~~~s~~-~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-------spd~~~La~ 92 (1196)
....+++|| +.+.||++... +.|..+|+ ..+... .+.+ .+ .. ....+..|+| +++|+.|.+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~--~~~~v~-~l~~--~~--~~---~~~~p~~ia~~~~~~~~d~~G~~lyv 209 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL--KNRMLS-SPLN--IN--TI---PTNRIRSIAFNKKIEGYADEAEYMIV 209 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET--TTTEEE-EEEC--CT--TS---SCSBEEEEEECCCBTTTBCTTCEEEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC--CCCEEE-EEEc--cC--cc---ccCCCcEEEEeecccccCCCCCEEEE
Confidence 467899999 58889998664 56888887 444432 1111 00 00 1246999999 999997777
Q ss_pred EECCC-c------EEEEECCC-CeE------EEeeeecCcEEEEEECCC-CCEEEEEeCCceEEEEec
Q 000992 93 GTSSG-L------LLLHSVDG-NAT------EVVGRVEGGVRFISPSPD-GDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 93 as~dG-~------I~lw~~~~-~~~------e~vg~~~~~I~~~awSPD-g~~LA~~s~d~tV~l~~~ 145 (1196)
+...+ . |.+.+... +.+ ..+... ..-..++.+|+ |.+.++-..++.|..++.
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~ 276 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDL 276 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence 76554 2 66666544 221 222222 23456788995 455555557777877654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.00 E-value=1.4 Score=55.56 Aligned_cols=386 Identities=9% Similarity=0.002 Sum_probs=195.2
Q ss_pred ceeEEeeecC-CCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIE-QNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~-~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++.|.+ .+.|++++..++|+.++. .++... .+. . ...+-++...|.++...++|... +++.++-+.
T Consensus 116 ~i~~i~~d~~~~g~lwi~t~~~gl~~~~~--~~~~~~-~~~---~--~~~~~l~~~~i~~i~~d~~g~lw-igt~~~Gl~ 186 (781)
T 3v9f_A 116 DVTHITSSVQAGKGLWVCTYYRGIEYLDI--ATGKFT-HYN---K--STVPALPSEQTWTATEAEDGKLY-IGHVEGGLS 186 (781)
T ss_dssp CEEEEEECSSTTSEEEEEESSSCEEEEET--TTTEEE-EES---T--TTCTTCSCCCEEEEEEEETTEEE-EEETTTEEE
T ss_pred cceEEEecCccCCCEEEEECCCCeeEEEC--CCCeEE-eec---c--CcccCCCccceEEEEECCCCCEE-EEecCCCeE
Confidence 4667777762 456888886566999987 333321 110 0 00011234578888887777654 567665588
Q ss_pred EEECCCCeEEEeee--------ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccC
Q 000992 101 LHSVDGNATEVVGR--------VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 101 lw~~~~~~~e~vg~--------~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
.|+..++++....+ ....|.++...++|.+.+ ++.+| |.+++..-............ ... -.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~G-l~~~d~~~~~~~~~~~~~~~-~~~-------l~ 256 (781)
T 3v9f_A 187 ILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSKG-LALFNANTETFTNFHNNPGN-IHG-------AL 256 (781)
T ss_dssp EEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEC-------------------C
T ss_pred EEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCCc-HheECCCCCcEEEEEcCCCc-ccc-------cc
Confidence 89998876653321 135699999999988765 45554 66665322211111110000 000 11
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec--------------cCCCceeEEEEcCCCCeEE
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--------------LKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--------------~~~~~v~slawsPdG~~IA 238 (1196)
...|.+|.-.++|.+.+ ++. .+-|.++|..++....... -....+.++..-++|++-+
T Consensus 257 ~~~i~~i~~d~~g~lWi--gt~------~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi 328 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWI--ATE------LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI 328 (781)
T ss_dssp CCCEEEEEECTTSEEEE--EES------SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE
T ss_pred CceEEEEEECCCCCEEE--EeC------CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE
Confidence 34678999999998776 431 1346778886665433221 1234578898999998665
Q ss_pred EEecCCCCCCCCeEEEEeCCCeeEEEEEe------c-cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--
Q 000992 239 AVYDRKSENKCPSIVFYERNGLERSSFDI------N-EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW-- 309 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nGl~~~~f~l------~-~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w-- 309 (1196)
++.. ..|..++.+...-..+.. . .-....|.+++-.++|.+.+.....+ |..|+..+..+
T Consensus 329 gt~~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~G----l~~~~~~~~~~~~ 397 (781)
T 3v9f_A 329 GTWG-------GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGG----INVFENGKRVAIY 397 (781)
T ss_dssp EEBS-------SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSC----EEEEETTEEEEEC
T ss_pred EecC-------CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCc----EEEEECCCCeEEE
Confidence 4422 247777765322222211 0 00134699999999998765443444 88888764322
Q ss_pred EEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEE-----------------EEeeecCCCeeEEEEcCCEEEEe
Q 000992 310 YLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNF-----------------IWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 310 ylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~-----------------~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
|. ..-........++.-++++. |.+++.++.+..++. ++.+..+..+.+-+.....|...
T Consensus 398 ~~-~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~ 474 (781)
T 3v9f_A 398 NK-ENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVI 474 (781)
T ss_dssp C------CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEE
T ss_pred cc-CCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEE
Confidence 11 00001111225555565553 566664333433211 11111111121111111223322
Q ss_pred eccccCCCCCceeeee-----cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccC
Q 000992 373 PLSLSLMPPPMYLFSL-----KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAF 447 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l-----~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~ 447 (1196)
....... ..... .....|.++...++| .|-+++.++-|..|+..+.... .+. .......
T Consensus 475 ~~~~~~~----~~~~~~~~~~~~~~~i~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~-~~~--------~~~~l~~ 538 (781)
T 3v9f_A 475 DLASKKV----IHHYDTSNSQLLENFVRSIAQDSEG---RFWIGTFGGGVGIYTPDMQLVR-KFN--------QYEGFCS 538 (781)
T ss_dssp ESSSSSC----CEEECTTTSSCSCSCEEEEEECTTC---CEEEEESSSCEEEECTTCCEEE-EEC--------TTTTCSC
T ss_pred eCCCCeE----EecccCcccccccceeEEEEEcCCC---CEEEEEcCCCEEEEeCCCCeEE-Ecc--------CCCCCCC
Confidence 2221111 00000 013568999988888 4566666555777776542111 010 0001123
Q ss_pred CcEEEEEEecCCeEEEE
Q 000992 448 GSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 448 ~~v~~l~~~~d~~lla~ 464 (1196)
+.|..+...++|.+.+.
T Consensus 539 ~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 539 NTINQIYRSSKGQMWLA 555 (781)
T ss_dssp SCEEEEEECTTSCEEEE
T ss_pred CeeEEEEECCCCCEEEE
Confidence 47888888888876553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.18 Score=57.55 Aligned_cols=21 Identities=0% Similarity=-0.210 Sum_probs=13.8
Q ss_pred cccHHHHhhCHHHHHHHHHHc
Q 000992 937 RYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
.+.+...+|+|++|+.++.++
T Consensus 149 lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 345666677777777776554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.017 Score=64.23 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=42.4
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcHHH---HHHHHHHHhcChHHHHhhc-----CCcHH-HHHHHHHHHHHHhcccC
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYHAD---CLNLMKKYAQLFPLGLKLI-----TDPAK-MEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~---ale~~~~~~~ly~~AL~L~-----~d~~~-~~~i~~~~A~~L~~~~~ 1005 (1196)
...+.+....|++++|++.|.+. ...+. ...++.+. +.+++|++.+ .+|.. ...+...|...+...++
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~~--~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQG--DSLECMAMTVQILLKL-DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTC--CSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHCCCHHHHHHHHhCC--CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH
Confidence 34456666777777777777762 21221 12334556 6677776665 23332 22333445555555556
Q ss_pred HHHHHHHHHhC
Q 000992 1006 FEDAATTYFCC 1016 (1196)
Q Consensus 1006 ~~eAa~~y~~a 1016 (1196)
+++|..+|.++
T Consensus 182 ~~eA~~~~~~~ 192 (291)
T 3mkr_A 182 LQDAYYIFQEM 192 (291)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.22 Score=56.84 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee------cCcEEEEEECCC----CCEEEEEeCC-----ceE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV------EGGVRFISPSPD----GDLLGVTTGF-----GQI 140 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~------~~~I~~~awSPD----g~~LA~~s~d-----~tV 140 (1196)
..+.+|+|.|||+.+ ++..+|.|.+++ ++ ..+.+... ..+...++|+|| |.+.++-+.. +.|
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 368999999999854 556779999998 43 43322211 357899999999 4444444432 456
Q ss_pred EEEeccCceeee-ee-cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccc-c---c--cCCCCEEEEEECCCC
Q 000992 141 LVMTHDWDLLYE-NP-LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFC-N---S--SKLHKRLKVWERDSG 212 (1196)
Q Consensus 141 ~l~~~~~d~~~~-~~-l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d-~---~--~~~d~~irVWd~~~G 212 (1196)
..++.+.+.+.. .. +.... ..... .|. -..|+|.|||.++++.+... . . ....++|.-++. +|
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p----~~~~~--~h~--~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~-dG 178 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIP----ARPHG--LHS--GGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP-EG 178 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEEC----CCTTC--CCC--CCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT-TS
T ss_pred EEEEeCCCCcCceEEEEEeCC----CCCCC--CcC--CceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC-CC
Confidence 555433221111 00 00000 00000 122 25799999998777433210 0 0 012246666677 55
Q ss_pred cEE--------------EEeccCCCceeEEEEcC-CCCeEEEE
Q 000992 213 TLQ--------------ASSELKAFMGAVLEWMP-SGANIAAV 240 (1196)
Q Consensus 213 ~l~--------------~~~e~~~~~v~slawsP-dG~~IAs~ 240 (1196)
... -...++.. ...++|.| +|++.++-
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSE 220 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEE
T ss_pred CCCCCCcccCCCCCCccEEEEcCCC-cccEEEECCCCCEEEEE
Confidence 210 01112222 36789999 77776654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.35 Score=55.29 Aligned_cols=237 Identities=15% Similarity=0.106 Sum_probs=119.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee------cCcEEEEEECCC----CCEEEEEeC---C----c
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV------EGGVRFISPSPD----GDLLGVTTG---F----G 138 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~------~~~I~~~awSPD----g~~LA~~s~---d----~ 138 (1196)
..+.+|+|.|||+. .++..+|.|.+++.++ . +.+... ..+...++|+|| |.+.++-+. + +
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~~G-~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISPSG-K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECSSC-E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeCCC-c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 46899999999984 4556679999998554 4 433211 357899999998 555554442 2 4
Q ss_pred eEEEEeccCc--eee-eeec-ccccCccccccCccccCCCCeEEEEEccCCceEEEeecccc----c--cCCCCEEEEEE
Q 000992 139 QILVMTHDWD--LLY-ENPL-EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCN----S--SKLHKRLKVWE 208 (1196)
Q Consensus 139 tV~l~~~~~d--~~~-~~~l-~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~----~--~~~d~~irVWd 208 (1196)
.|..++.+.. .+. ...+ .... ... .| .-..|+|.|||.++++.+.... . ....++|.-.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~------~~~--~h--~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~ 175 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP------GAY--IH--NGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVD 175 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE------CCS--SC--CCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC------CCC--Cc--CCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEc
Confidence 4554443221 010 0000 0000 000 12 1257999999997774432100 0 01234566667
Q ss_pred CCCCcE---------EEEeccCCCceeEEEEcC-CCCeEEEEecCCCCCCCCeEEEEeCCCeeEE---------------
Q 000992 209 RDSGTL---------QASSELKAFMGAVLEWMP-SGANIAAVYDRKSENKCPSIVFYERNGLERS--------------- 263 (1196)
Q Consensus 209 ~~~G~l---------~~~~e~~~~~v~slawsP-dG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~--------------- 263 (1196)
. +|.. .-...++... ..++|.| +|++.++-.... ....|.+.+..+. .+
T Consensus 176 ~-dG~~p~~npf~~~~i~a~G~rnp-~Gla~d~~~g~l~v~d~g~~---~~dei~~i~~G~n-yGwp~~~g~~~~~~~~~ 249 (354)
T 3a9g_A 176 E-EGRPPADNPFPNSPIWSYGHRNP-QGIDWHRASGVMVATEHGPV---GHDEVNIILKGGN-YGWPLATGKAGRGEFVD 249 (354)
T ss_dssp T-TSCCCTTSSSTTCCEEEECCSCC-CEEEECTTTCCEEEEECCSS---SCCEEEEECTTCB-CCTTTCCSCCCCTTSCC
T ss_pred C-CCCCCCCCCCCCCcEEEEccCCc-ceEEEeCCCCCEEEEecCCC---CCcEEEEecCCCc-CCCCcccCCCCCCCCcC
Confidence 7 5641 1111233332 6899999 788776643211 1123444443211 00
Q ss_pred -EEEeccCCCCcEEEEEE-------ccCCCeeEEEEccCCcceEEEEEecCC-EEEEEEEEEEecC--C-cEEEEEccCC
Q 000992 264 -SFDINEQIDSTVELLKW-------NCMSDLLAAVVRFEEYDSVKICFFSNN-HWYLKYEIRYLRR--D-GIRFMWHPTK 331 (1196)
Q Consensus 264 -~f~l~~~~~~~V~~laW-------SpDg~~LAs~~~d~~~~~V~lW~~~n~-~wylkq~l~~~~~--~-~~~v~Wsp~~ 331 (1196)
.+.+. +.......++| ..+|.+++.....+ .|...+.... .. ...+ .+... . ...+.++||+
T Consensus 250 p~~~~~-~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~---~v~~~~~~~~g~~-~~~~-~~~~~~~~rp~~v~~~pDG 323 (354)
T 3a9g_A 250 PVIDTG-SETWAPSGASFVHGDMFPGLRGWLLIACLRGS---MLAAVNFGDNMEV-RKIS-TFFKNVFGRLRDVVIDDDG 323 (354)
T ss_dssp CSEECT-TCCCCEEEEEECCSSSCGGGTTEEEEEETTTT---EEEEEEECGGGCE-EEEE-EECTTTSCCEEEEEECTTS
T ss_pred CEeecC-CCCcCCcceEEECCCCCcccCCcEEEEEcCCC---EEEEEEECCCCcc-ccee-eeccCCCCCeeEEEECCCC
Confidence 01110 11234677888 36776666544433 5666665532 21 1111 22211 2 2778888887
Q ss_pred CceEEEEe
Q 000992 332 PLQLICWT 339 (1196)
Q Consensus 332 ~~~L~~~~ 339 (1196)
. |.+.+
T Consensus 324 ~--lyv~~ 329 (354)
T 3a9g_A 324 G--ILIST 329 (354)
T ss_dssp C--EEEEE
T ss_pred c--EEEEE
Confidence 4 45554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.011 Score=65.13 Aligned_cols=161 Identities=12% Similarity=0.010 Sum_probs=109.3
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCc----HHHHHHHHHHHhc-ChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSY----HADCLNLMKKYAQ-LFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~----~~~ale~~~~~~~-ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..+...+|++++|+..+.++ .++. ...+.- .... + .|++|++.+ .+|. ....+..+|..+...+
T Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY-YLMV-GHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH-HHHS-CSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHh-hhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcc
Confidence 35556788999999887765 2221 223322 2344 5 788888877 2333 3456778899999999
Q ss_pred CHHHHHHHHHhCCCH--------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSSL--------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~~--------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|...|.++-.. -....+|...|++++|+....+. ...+.. ......+|..+...|++.+|...+.+
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999998876322 23446788888998888766542 223322 35677889999999999999999877
Q ss_pred hcCC----------------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1076 YCGD----------------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1076 yl~d----------------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+.. .-....+|.+.++|++|+....+
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4321 13456678888999999876543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.61 Score=52.21 Aligned_cols=163 Identities=13% Similarity=-0.012 Sum_probs=97.7
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCC----CeEE-EeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDG----NATE-VVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~----~~~e-~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+++|.++++.|..+ ..++.|..++.++ ...+ ++...-.....+++++.+..|-.+ +..+.|.+.+.+..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 578999999987666655 4568899999886 2223 222111345788898866655444 56778877665443
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~s 227 (1196)
..... +... -..-..|+..|++.++- ++... ....|...+. +|......- ..-.....
T Consensus 110 ~~~~~-~~~~--------------~~~P~~iavdp~~g~ly-~~d~~----~~~~I~~~~~-dG~~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 110 KRKTL-FREN--------------GSKPRAIVVDPVHGFMY-WTDWG----TPAKIKKGGL-NGVDIYSLVTENIQWPNG 168 (316)
T ss_dssp SEEEE-EECT--------------TCCEEEEEEETTTTEEE-EEECS----SSCEEEEEET-TSCCEEEEECSSCSCEEE
T ss_pred ceEEE-EECC--------------CCCcceEEeCCCCCEEE-EEccC----CCCeEEEEcC-CCCCeEEEEECCCCCceE
Confidence 22111 1100 12346899998655443 23211 1268888888 776655432 22244589
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
|+|+|++..|-.+... ...|..++.+|.....
T Consensus 169 la~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~ 200 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKT 200 (316)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTSCSCEE
T ss_pred EEEeccCCEEEEEECC-----CCeEEEEecCCCceEE
Confidence 9999998888776543 3578889988754443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.027 Score=61.37 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
......+|..+...|++.+|...|.+
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566677777777788777777666
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0044 Score=65.98 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
.....+|..+...|++.+|...+.+.+. + ......+|.+.+++++|.+..
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 232 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3455667777777777777777766432 1 123344555666666665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.041 Score=60.45 Aligned_cols=52 Identities=15% Similarity=-0.012 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.....+|..+...|++.+|...|.+.+. + ......+|.+.+++++|+....+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4566777777888888888887776431 1 23445677778888888776654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.28 Score=56.73 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=98.6
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~~ 152 (1196)
..+.+++|.+.++.|..+ ...+.|..++.+++..+.+.. --.....++++|.+..|-.+ +..+.|.+.+.+......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 468999999876666554 467889999999876553321 11234667888866665544 455667665443322111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slaws 231 (1196)
.. .. .-..-..|+..|++.++- ++... ....|...+. +|...... ...-..-..|+|+
T Consensus 196 l~-~~--------------~l~~P~giavdp~~g~ly-~td~~----~~~~I~r~~~-dG~~~~~~~~~~~~~PnGlavd 254 (386)
T 3v65_B 196 LL-WQ--------------SLEKPRAIALHPMEGTIY-WTDWG----NTPRIEASSM-DGSGRRIIADTHLFWPNGLTID 254 (386)
T ss_dssp EE-CS--------------SCSCEEEEEEETTTTEEE-EEECS----SSCEEEEEET-TSCSCEEEECSSCSCEEEEEEE
T ss_pred ee-cC--------------CCCCCcEEEEEcCCCeEE-EeccC----CCCEEEEEeC-CCCCcEEEEECCCCCeeeEEEe
Confidence 11 00 012346889998766554 33211 2268888898 66544433 2222345899999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
|++..|-.+... ...|..++.+|....
T Consensus 255 ~~~~~lY~aD~~-----~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 255 YAGRRMYWVDAK-----HHVIERANLDGSHRK 281 (386)
T ss_dssp GGGTEEEEEETT-----TTEEEEECTTSCSCE
T ss_pred CCCCEEEEEECC-----CCEEEEEeCCCCeeE
Confidence 988887776543 357888888875443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0031 Score=70.58 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.++.+|...|++++|+++|. +|+.+....+ +..........+|..+.. |+|.+|...|.+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~------~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIE------KASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHH------HHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH------HHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 34444444455555554442 2233333322 222223344455555555 666665555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0051 Score=67.75 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|..+...+++++|...|.++-. +.....+|...|+|++|+....+. ...++. ......+|..+.
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~ 251 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 4455556666666666666666655411 122234455555555555433321 001111 123445555555
Q ss_pred HcCChHHHHHHHHH
Q 000992 1062 ALGKPGEAAKIALD 1075 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~ 1075 (1196)
..|++.+|...|.+
T Consensus 252 ~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 252 NMSQYDLAAKQLVR 265 (327)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 66666666655544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0096 Score=63.89 Aligned_cols=25 Identities=8% Similarity=-0.280 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..+|..+...+++++|...|.++
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.61 Score=53.08 Aligned_cols=197 Identities=16% Similarity=0.075 Sum_probs=115.4
Q ss_pred eEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I~lw 102 (1196)
.+.+.++ ...|+++.. +.|..+++ ...... .+ +. ....+.+++|.+..+.|..+ ...+.|..+
T Consensus 37 ~C~~~~~-~~~ll~~~~-~~I~~i~~--~g~~~~-~~------~~-----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 37 SCKALGP-EPVLLFANR-IDIRQVLP--HRSEYT-LL------LN-----NLENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp CEEESSS-CCEEEEECB-SCEEEECT--TSCCEE-EE------EC-----SCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccccccc-CceeEeecc-cceEEEeC--CCCeeE-Ee------ec-----CCCceEEEEEeccccEEEEEeccCCceEEE
Confidence 3444455 334444443 44888887 332221 01 11 12468999999877766655 467889999
Q ss_pred ECCCCeEEEeee-ecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 103 SVDGNATEVVGR-VEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 103 ~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+.+++..+.+.. --.....+++.|.+..|-.+ +..+.|.+.+.+....... +... -..-..|+
T Consensus 101 ~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l-~~~~--------------l~~P~~ia 165 (349)
T 3v64_C 101 NLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL-LWQS--------------LEKPRAIA 165 (349)
T ss_dssp ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-ECTT--------------CSCEEEEE
T ss_pred ecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE-EeCC--------------CCCcceEE
Confidence 998865543221 11345678898866655444 4566777766554322111 1100 02336899
Q ss_pred EccCCceEEEeeccccccCCC-CEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 181 WRGDGKYFATLSEFCNSSKLH-KRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d-~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
+.|++.++- .+.. +. ..|...+. +|......- ..-..-..|+|+|++..|-.+... ...|..++.+
T Consensus 166 vdp~~g~ly-~td~-----~~~~~I~r~~~-dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~d 233 (349)
T 3v64_C 166 LHPMEGTIY-WTDW-----GNTPRIEASSM-DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-----HHVIERANLD 233 (349)
T ss_dssp EETTTTEEE-EEEC-----SSSCEEEEEET-TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETT
T ss_pred EecCcCeEE-Eecc-----CCCCEEEEEeC-CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-----CCEEEEEeCC
Confidence 998655444 3321 23 78888898 776544432 122345899999988887776543 3578888888
Q ss_pred CeeEE
Q 000992 259 GLERS 263 (1196)
Q Consensus 259 Gl~~~ 263 (1196)
|....
T Consensus 234 G~~~~ 238 (349)
T 3v64_C 234 GSHRK 238 (349)
T ss_dssp SCSCE
T ss_pred CCceE
Confidence 75433
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.3 Score=55.89 Aligned_cols=103 Identities=12% Similarity=0.060 Sum_probs=61.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEEC---
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGTS--- 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as~--- 95 (1196)
.+.+++|++++. ||++...+.|+.++. ..+ . .+.+++ +. ......+.+|+++|| +..|.++..
T Consensus 30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d~--~G~-~--~~~~~~--v~---~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 30 VPWSIAPLGGGR-YLVTERPGRLVLISP--SGK-K--LVASFD--VA---NVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp CEEEEEEEETTE-EEEEETTTEEEEECS--SCE-E--EEEECC--CC---CSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CCeEEEEcCCCe-EEEEeCCCEEEEEeC--CCc-e--Eeeccc--ee---ecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 577899999876 888877788988875 222 1 122222 00 001257999999998 555555443
Q ss_pred -C----CcEEEEECCCC--e---EE-Eeeeec----CcEEEEEECCCCCEEEEEe
Q 000992 96 -S----GLLLLHSVDGN--A---TE-VVGRVE----GGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 96 -d----G~I~lw~~~~~--~---~e-~vg~~~----~~I~~~awSPDg~~LA~~s 135 (1196)
+ +.|..|+.+++ . .+ ++.... ..-..++|+|||.+.++.+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 2 56777877654 1 11 111111 1235789999998766543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.48 Score=51.70 Aligned_cols=197 Identities=8% Similarity=-0.021 Sum_probs=115.4
Q ss_pred CCEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEEEe--eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCce---
Q 000992 76 DSITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATEVV--GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDL--- 149 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e~v--g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~--- 149 (1196)
+.+.+++|.|++..|. +...++.|...|.++..+..+ +. ..-...+++.++|.++++.-.++.+.+....-+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 5699999999887665 466778888899985444332 32 1457888999998755544456666655322111
Q ss_pred -eeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEec-------c
Q 000992 150 -LYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSE-------L 220 (1196)
Q Consensus 150 -~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e-------~ 220 (1196)
+....+.-. ......+.-.|+|.|+++.|- ++... ....|..|+.- .+.-..... .
T Consensus 106 ~~~~~~~~~~----------~~~~N~g~EGLA~d~~~~~L~-va~E~----~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 106 ILKKIKIPLQ----------ESPTNCGFEGLAYSRQDHTFW-FFKEK----NPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp EEEEEECCCS----------SCCCSSCCEEEEEETTTTEEE-EEEES----SSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred eeeeeccccc----------cccccCCcceEEEeCCCCEEE-EEECc----CCceEEEEcccccCCceeeecchhhcccc
Confidence 111111000 002234568999999997665 34311 12345555510 111111111 1
Q ss_pred CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCC------CCcEEEEEEccCCCeeEEEEccC
Q 000992 221 KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQI------DSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 221 ~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~------~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.-.-..+|++.|.-..+-..|.. ...+..++.+|.....+.|.... -..-..|++.|+|++ -+.++..
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~-----s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n 244 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHE-----SRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPN 244 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETT-----TTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTT
T ss_pred ccCCceeEEEcCCCCeEEEEECC-----CCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCc
Confidence 12235899999976665555553 46788899999877766665210 124678999999984 4445544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.031 Score=59.69 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
......++..+|.-+...+++++|..+|.++
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344556666666666666666666666553
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.11 Score=64.71 Aligned_cols=126 Identities=9% Similarity=-0.033 Sum_probs=73.2
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..+++.+||+.++ +++.+ ...+++||..+++-..... +....-.+.+.-|+|++++.|+.........++.+|
T Consensus 246 ~~~~~~~~g~lyv-~GG~~-----~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~y 319 (656)
T 1k3i_A 246 PGISMDGNGQIVV-TGGND-----AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 319 (656)
T ss_dssp CEEEECTTSCEEE-ECSSS-----TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred ccccCCCCCCEEE-eCCCC-----CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEe
Confidence 4678899999999 67642 3589999997665444322 122233577788999999998842211223568888
Q ss_pred eCCCeeEEEEEecc----CCCCcEEEEEEccCCCeeEEEEccCC------cceEEEEEecCCEEE
Q 000992 256 ERNGLERSSFDINE----QIDSTVELLKWNCMSDLLAAVVRFEE------YDSVKICFFSNNHWY 310 (1196)
Q Consensus 256 e~nGl~~~~f~l~~----~~~~~V~~laWSpDg~~LAs~~~d~~------~~~V~lW~~~n~~wy 310 (1196)
+.....-. .++. +....-....+..++.+.+.++.++. ...++.|+..+..|.
T Consensus 320 d~~t~~W~--~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~ 382 (656)
T 1k3i_A 320 SPSSKTWT--SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 382 (656)
T ss_dssp ETTTTEEE--EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred CCCCCcce--eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee
Confidence 86422111 1110 00000001223456666676665531 236889999887875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.081 Score=60.57 Aligned_cols=163 Identities=11% Similarity=-0.008 Sum_probs=98.5
Q ss_pred ccHHHHhhCHHHHHHHHHHcCC------CcHHHH------HHHHHHHhcChHHHHhhc----------CCcHHHHHHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSMGD------SYHADC------LNLMKKYAQLFPLGLKLI----------TDPAKMEQVLEA 995 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~------~~~~~a------le~~~~~~~ly~~AL~L~----------~d~~~~~~i~~~ 995 (1196)
+.+...+|+|++|+.++.++-. +....+ -.++... +.|++|++.+ .++.....++..
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 171 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALYN 171 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 4555566777777776654310 011111 1112334 4555555544 345566778888
Q ss_pred HHHHHhcccC-----------------HHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHHHHHHHhh---
Q 000992 996 WADHLSDVKC-----------------FEDAATTYFCCSSL--------------EKAMKAYRASGNWSGVLTVAGL--- 1041 (1196)
Q Consensus 996 ~A~~L~~~~~-----------------~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~al~la~~--- 1041 (1196)
+|..+...++ |++|..+|.++-.. .....+|...|+|++|+....+
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8999999999 88888877765221 1223566677777776654433
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCCH-------------HHHHHHHHHhcCHHHHHHHHHh
Q 000992 1042 ----LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGDV-------------TNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1042 ----l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d~-------------~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+ +..........+|..+...|++.+|...|.+.+.-. .....+|.+.++|++|+....+
T Consensus 252 ~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 252 IAREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHT-CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcC-CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 222333467788999999999999998887643211 2234567788888888776543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.039 Score=68.75 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=115.7
Q ss_pred EEEEEEccCCCEEEEEE-CCCcEEEEECCCCeEEEeeeecC--cEEEEEECCCCCEEEEEe-CC-----ceEEEEec---
Q 000992 78 ITAFDYLMEKEALIVGT-SSGLLLLHSVDGNATEVVGRVEG--GVRFISPSPDGDLLGVTT-GF-----GQILVMTH--- 145 (1196)
Q Consensus 78 v~~v~~spd~~~La~as-~dG~I~lw~~~~~~~e~vg~~~~--~I~~~awSPDg~~LA~~s-~d-----~tV~l~~~--- 145 (1196)
..+++++++|+.+++|+ .++++.+||+.+++...+..... .=.+++.-|||+++++++ .+ .++.+|+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 34577889999999998 45689999999887765543221 123556778999999998 34 35666542
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC---
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA--- 222 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~--- 222 (1196)
.|..+......+.....+ ...-..++.+.-+.+. ||+.+. .. ....+..||..++..........
T Consensus 325 ~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg~-~g~~~~-~~-------~~~~v~~yd~~~~~w~~~~~~~~~~~ 392 (656)
T 1k3i_A 325 TWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGWK-KGSVFQ-AG-------PSTAMNWYYTSGSGDVKSAGKRQSNR 392 (656)
T ss_dssp EEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEECG-GGCEEE-CC-------SSSEEEEEECSTTCEEEEEEECEETT
T ss_pred cceeCCCccccccccccc---cceeecCCceEEEECC-CCcEEE-ec-------CccceeeeecCCcceeecCCcccccc
Confidence 233221100000000000 0000012222223322 444333 11 23678999996655333221111
Q ss_pred ------CceeEEEEcC-CCCeEEEEecCCC--CCCCC---eEEEEeCCCeeEEEEEe-ccCCCCcEEEEEEccCCCeeEE
Q 000992 223 ------FMGAVLEWMP-SGANIAAVYDRKS--ENKCP---SIVFYERNGLERSSFDI-NEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 223 ------~~v~slawsP-dG~~IAs~s~d~~--~~~~~---~V~~~e~nGl~~~~f~l-~~~~~~~V~~laWSpDg~~LAs 289 (1196)
..-.++.|.+ +|++++.|+.+.. ..... .|.+|+.+...-.+... ..+....-...+..|||+++++
T Consensus 393 ~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 393 GVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp EECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEE
T ss_pred ccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEE
Confidence 1224555654 7888888875321 00011 56667654322111110 1111111234567799999999
Q ss_pred EEccCC--------cceEEEEEecCCEEE
Q 000992 290 VVRFEE--------YDSVKICFFSNNHWY 310 (1196)
Q Consensus 290 ~~~d~~--------~~~V~lW~~~n~~wy 310 (1196)
++.+.. -..+.+||..+..|.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 986521 237899999888884
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.73 E-value=3 Score=55.20 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=50.6
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee--ecCcEEEEEECCCC------CEEEEEeC-CceEEEEe-cc
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR--VEGGVRFISPSPDG------DLLGVTTG-FGQILVMT-HD 146 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDg------~~LA~~s~-d~tV~l~~-~~ 146 (1196)
.|+..+.. +.++++++ +|.|..+..+.+.+..+.. .++.|.|++++|.+ ..+|+|.. |++|.+.+ .+
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 45555433 35777775 7788887776555443332 35789999999753 69999996 99999987 34
Q ss_pred Cceeeeeec
Q 000992 147 WDLLYENPL 155 (1196)
Q Consensus 147 ~d~~~~~~l 155 (1196)
.+++....+
T Consensus 592 l~~~~~~~L 600 (1158)
T 3ei3_A 592 FELLHKEML 600 (1158)
T ss_dssp CCEEEEEEC
T ss_pred CCeEEEEEC
Confidence 444444444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.13 Score=58.13 Aligned_cols=117 Identities=15% Similarity=0.056 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHHHHHhcccC--------------------HHHHHHHHHhCCCH--------------HHHHHHHHHcC
Q 000992 985 DPAKMEQVLEAWADHLSDVKC--------------------FEDAATTYFCCSSL--------------EKAMKAYRASG 1030 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~--------------------~~eAa~~y~~ag~~--------------~kAl~~y~~~g 1030 (1196)
++.....++..+|..+...++ |++|..+|.++-.. .....+|...|
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 201 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 201 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc
Confidence 444455567777777777777 77777666654221 12224555566
Q ss_pred CHHHHHHH-------HhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc------CCHH-------HHHHHHHHh
Q 000992 1031 NWSGVLTV-------AGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC------GDVT-------NGISLLIDA 1090 (1196)
Q Consensus 1031 ~w~~al~l-------a~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl------~d~~-------~Ai~~y~~~ 1090 (1196)
++++|+.. +...+ +..........+|..+...|++.+|...|.+.+ ++.. ....+|.+.
T Consensus 202 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 202 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp BHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence 66655543 33333 333444577888999999999999998887643 2221 234567788
Q ss_pred cCHHHHHHHHHh
Q 000992 1091 RDWEEALRVAFM 1102 (1196)
Q Consensus 1091 ~~w~eA~rla~~ 1102 (1196)
++|++|+....+
T Consensus 281 g~~~~A~~~~~~ 292 (406)
T 3sf4_A 281 QDYEKAIDYHLK 292 (406)
T ss_dssp TCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 889888776543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.51 Score=52.85 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=113.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccc---cccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQN---ERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSS 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~d 96 (1196)
.+.+++||++++.||.+.. .+.|+.++++ .. .....+ ++.+ ...+.+|++.+.+..|..+ ...
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~--g~~~~~~~~~~--~~~~--------~~~p~glavd~~~~~ly~~d~~~ 98 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLD--RAHGVSSYDTV--ISRD--------IQAPDGLAVDWIHSNIYWTDSVL 98 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEE--ECSS--------CSCCCEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECC--CCCCCcccEEE--EeCC--------CCCcCEEEEeecCCeEEEEECCC
Confidence 5789999999999999865 5679999883 21 110011 1111 1356788998766655544 667
Q ss_pred CcEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeC-C-ceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 97 GLLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG-F-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 97 G~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~-d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
+.|.+.+.++.....+.. .-..-..++..|++..|-.+.. . +.|...+.++....... . .. -
T Consensus 99 ~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-~-~~-------------~ 163 (316)
T 1ijq_A 99 GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T-EN-------------I 163 (316)
T ss_dssp TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-C-SS-------------C
T ss_pred CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-E-CC-------------C
Confidence 899999998865553332 1245789999997776665543 2 56665554443221111 0 00 0
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-cc--CCCceeEEEEcCCCCeEEEEecCCCCCCCC
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-EL--KAFMGAVLEWMPSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~--~~~~v~slawsPdG~~IAs~s~d~~~~~~~ 250 (1196)
..-..|+|+|++..|- ++. ...+.|.++|. +|....+. .. .-.....|++. .| .|..+... ..
T Consensus 164 ~~P~gla~d~~~~~lY-~~D-----~~~~~I~~~d~-dg~~~~~~~~~~~~~~~P~giav~-~~-~ly~~d~~-----~~ 229 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVF-ED-KVFWTDII-----NE 229 (316)
T ss_dssp SCEEEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEEE-TT-EEEEEETT-----TT
T ss_pred CCceEEEEeccCCEEE-EEE-----CCCCeEEEEec-CCCceEEEeecCCccCCcEEEEEE-CC-EEEEEECC-----CC
Confidence 1336899999877655 332 23578999999 56433332 11 12233566663 33 33333332 24
Q ss_pred eEEEEeC-CCe
Q 000992 251 SIVFYER-NGL 260 (1196)
Q Consensus 251 ~V~~~e~-nGl 260 (1196)
.|..+++ +|.
T Consensus 230 ~V~~~~~~~g~ 240 (316)
T 1ijq_A 230 AIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEeCCCCc
Confidence 6666664 443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0074 Score=63.90 Aligned_cols=102 Identities=7% Similarity=-0.043 Sum_probs=61.2
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc----CCcHHHHHHHHHHHHHHhcccCHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI----TDPAKMEQVLEAWADHLSDVKCFEDAA 1010 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~----~d~~~~~~i~~~~A~~L~~~~~~~eAa 1010 (1196)
...+.+...+|+|++|+..|.++-. ...--+...+. +.|++|++.+ ........++..+|..+...++|++|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT--EHRTADILTKL-RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh--cCchhHHHHHH-hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 3445667788999999998887621 00012345556 6788888877 233345566777777777777777777
Q ss_pred HHHHhCCC--------HHHHHHHHHHcCCHHHHHHHH
Q 000992 1011 TTYFCCSS--------LEKAMKAYRASGNWSGVLTVA 1039 (1196)
Q Consensus 1011 ~~y~~ag~--------~~kAl~~y~~~g~w~~al~la 1039 (1196)
..|.++-. +-....+|...|+|++|+...
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77766521 122234455555555555433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0073 Score=62.46 Aligned_cols=77 Identities=8% Similarity=0.006 Sum_probs=36.1
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc-cC
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV-KC 1005 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~-~~ 1005 (1196)
+.+....|+|++|++.|.++ .++..+ ..-..+... +.|++|++++ .+|. ...++..+|..+... ++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPD-SAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCc
Confidence 34444566677776666543 111111 111122344 5566666555 1222 123444555555555 55
Q ss_pred HHHHHHHHHhC
Q 000992 1006 FEDAATTYFCC 1016 (1196)
Q Consensus 1006 ~~eAa~~y~~a 1016 (1196)
+++|...|.++
T Consensus 93 ~~~A~~~~~~~ 103 (225)
T 2vq2_A 93 PAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65555555544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.017 Score=68.86 Aligned_cols=162 Identities=8% Similarity=-0.040 Sum_probs=106.1
Q ss_pred hcccHHHHhhCHHHHHHHHHHcC---CCcHHHHHH----HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcc
Q 000992 936 MRYTIDLRLQRFENALKHIVSMG---DSYHADCLN----LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDV 1003 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~g---~~~~~~ale----~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~ 1003 (1196)
..+.+....|+|++|+..|.++- ++ ..+.- .+... +.|++|++.+ .+|. ...++..+|..+...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADK-ENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHh-cCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhc
Confidence 34466677889999999888652 22 11211 12344 6677777776 2333 345677889999999
Q ss_pred cCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1004 KCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
++|++|...|.++-. +-....+|...|+|++|+.+..+. ...+.. ......+|..+...|++.+|...|.
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999987632 223457888889999998766542 111111 2466778999999999999999987
Q ss_pred HhcCCH-------------HHHHHHHHHh----------cCHHHHHHHHHh
Q 000992 1075 DYCGDV-------------TNGISLLIDA----------RDWEEALRVAFM 1102 (1196)
Q Consensus 1075 ~yl~d~-------------~~Ai~~y~~~----------~~w~eA~rla~~ 1102 (1196)
+.+... -....+|.+. ++|++|+....+
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 733211 1112455555 888888876554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.19 Score=54.74 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=64.2
Q ss_pred CcHHHHHHHHHHHHHHhcccC--------------------HHHHHHHHHhCCCH--------------HHHHHHHHHcC
Q 000992 985 DPAKMEQVLEAWADHLSDVKC--------------------FEDAATTYFCCSSL--------------EKAMKAYRASG 1030 (1196)
Q Consensus 985 d~~~~~~i~~~~A~~L~~~~~--------------------~~eAa~~y~~ag~~--------------~kAl~~y~~~g 1030 (1196)
++.....++...|..+...++ +++|...|.++-.. .....+|...|
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 333444566666666666666 66666666544211 11123444555
Q ss_pred CHHHHHHHH-------hhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc------CCH-------HHHHHHHHHh
Q 000992 1031 NWSGVLTVA-------GLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC------GDV-------TNGISLLIDA 1090 (1196)
Q Consensus 1031 ~w~~al~la-------~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl------~d~-------~~Ai~~y~~~ 1090 (1196)
++++|+... ...+ ++.........+|..+...|++.+|...+.+.+ ++. .....+|...
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 555555433 3322 233334466777888888888888888776632 221 1223456667
Q ss_pred cCHHHHHHHHH
Q 000992 1091 RDWEEALRVAF 1101 (1196)
Q Consensus 1091 ~~w~eA~rla~ 1101 (1196)
++|++|+....
T Consensus 277 g~~~~A~~~~~ 287 (338)
T 3ro2_A 277 QDYEKAIDYHL 287 (338)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 77777766543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.2 Score=57.29 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=61.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEECC--
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGTSS-- 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as~d-- 96 (1196)
.+.++++++++. ||++...+.|+.++- ...+ .+.+++ +. ......+.+|+|+|| +..|.++...
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~~--g~~~---~~~~~~--v~---~~g~~~p~gia~~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFRE--GRLS---TYAELS--VY---HRGESGLLGLALHPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEET--TEEE---EEEECC--CC---CSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEEC--CCcc---Eeecce--Ee---ecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence 577899999987 787777788888872 2211 122222 00 001357999999999 5566555432
Q ss_pred ----CcEEEEECCCCeE---E-Eeeeec------CcEEEEEECCCCCEEEEEe
Q 000992 97 ----GLLLLHSVDGNAT---E-VVGRVE------GGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 97 ----G~I~lw~~~~~~~---e-~vg~~~------~~I~~~awSPDg~~LA~~s 135 (1196)
+.|..++.+++.+ + ++.... ..-..++|+|||.+.++.+
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 5677788765422 1 221111 1235799999997665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.02 Score=64.40 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=41.0
Q ss_pred cccHHHHhhCHHHHHHHHHHcC---CCcH----HH--------------HHHHHHHHhcChHHHHhhc-----CCcHH-H
Q 000992 937 RYTIDLRLQRFENALKHIVSMG---DSYH----AD--------------CLNLMKKYAQLFPLGLKLI-----TDPAK-M 989 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~g---~~~~----~~--------------ale~~~~~~~ly~~AL~L~-----~d~~~-~ 989 (1196)
.+.+...+|++++|+..|.++- +... .. .+..+... +.|++|++++ .+|.. .
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~ 216 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSID 216 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH-HHHHHHHHHHHHHHHHSTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc-ccHHHHHHHHHHHHHhCcCccc
Confidence 3456666788888888877541 1100 00 11112255 5677777666 23321 2
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..++..+|..+...++|++|...|.++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666666666665555543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.58 E-value=0.88 Score=52.87 Aligned_cols=164 Identities=13% Similarity=-0.024 Sum_probs=99.7
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCC----eE-EEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDGN----AT-EVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~----~~-e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+|+|.+..+.|..+ ...+.|..+++++. .. .+++..-.....+++.+.+..|..+ +..+.|.+.+.+..
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~ 191 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 191 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC
Confidence 578999999977777665 45678888988762 22 3333223467889999865555555 45677776654443
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~s 227 (1196)
...... ... -..-..|+..|.+.++. .+.. .....|...+. +|...... ...-.....
T Consensus 192 ~~~~l~-~~~--------------~~~P~~iavdp~~g~ly-~td~----~~~~~I~~~~~-dG~~~~~~~~~~l~~P~g 250 (400)
T 3p5b_L 192 KRKTLF-REN--------------GSKPRAIVVDPVHGFMY-WTDW----GTPAKIKKGGL-NGVDIYSLVTENIQWPNG 250 (400)
T ss_dssp SEEEEE-ECS--------------SCCEEEEEEETTTTEEE-EEEC----SSSCCEEEEET-TSCSCEEEECSSCSCEEE
T ss_pred ceEEEE-eCC--------------CCCcceEEEecccCeEE-EEeC----CCCCEEEEEeC-CCCccEEEEECCCCceEE
Confidence 222111 100 12346889998655444 3321 12367888898 77554443 222245589
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
|+|.|++..|-.+... ...|..++.+|.....+
T Consensus 251 lavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~ 283 (400)
T 3p5b_L 251 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTI 283 (400)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEE
T ss_pred EEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEE
Confidence 9999999888777543 36788888888654433
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.52 Score=53.64 Aligned_cols=174 Identities=11% Similarity=0.018 Sum_probs=102.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||+.++.||.+.. .+.|+.++. ..+..+ .+. ..+ ...+.++++.+.+..|..+ +..+.|
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~--~g~~~~-~~~--~~~--------~~~p~glavd~~~g~ly~~d~~~~~I 140 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANL--NGSNVE-EVV--STG--------LESPGGLAVDWVHDKLYWTDSGTSRI 140 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCE-EEE--CSS--------CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEec--CCCCce-EEE--eCC--------CCCccEEEEecCCCeEEEEcCCCCeE
Confidence 5788999999999999854 667999988 333221 110 111 1356788898866665444 556789
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEe-CC-ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTT-GF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s-~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.+.++.....+.. .-..-..++++|++..|-.+. +. +.|...+.++...... +. .. -..-
T Consensus 141 ~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~-~~-~~-------------~~~P 205 (349)
T 3v64_C 141 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII-AD-TH-------------LFWP 205 (349)
T ss_dssp EEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES-CC-SS-------------CSCE
T ss_pred EEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE-EE-CC-------------CCCc
Confidence 999998764433221 124568899999776665554 33 5565554443221111 00 00 0123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEW 230 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slaw 230 (1196)
..|+|+|++..|- ++- ...+.|..++. +|....+ .....+....|+.
T Consensus 206 nGla~d~~~~~lY-~aD-----~~~~~I~~~~~-dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 206 NGLTIDYAGRRMY-WVD-----AKHHVIERANL-DGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEECSSCSSEEEEEE
T ss_pred ceEEEeCCCCEEE-EEE-----CCCCEEEEEeC-CCCceEEEEeCCCCCceEEEE
Confidence 6899998777555 332 24578999998 6643332 2222233456666
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.41 Score=55.36 Aligned_cols=198 Identities=11% Similarity=-0.020 Sum_probs=112.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||+.++.||.+.. .+.|+.+++ ..+..+ .+ +..+ ...+.++++.+.+..|..+ +..+.|
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~--~g~~~~-~~--~~~~--------~~~p~glavd~~~g~lY~~d~~~~~I 183 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANL--NGSNVE-EV--VSTG--------LESPGGLAVDWVHDKLYWTDSGTSRI 183 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET--TSCCEE-EE--ECSS--------CSCCCCEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEec--CCCCcE-EE--EeCC--------CCCccEEEEEeCCCeEEEEcCCCCeE
Confidence 6788999999999999854 567999988 333221 11 0111 1345678888866666544 456778
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeC-C-ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTG-F-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~-d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.+.++.....+.. --..-..++++|++..|-.+.. . +.|...+.++....... ... -..-
T Consensus 184 ~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~--------------~~~P 248 (386)
T 3v65_B 184 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DTH--------------LFWP 248 (386)
T ss_dssp EECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSS--------------CSCE
T ss_pred EEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-ECC--------------CCCe
Confidence 888888754332221 1245788999998777666643 3 45655544433221111 000 0123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+|+|++..|- ++- ...+.|+.++. +|....+ .....+....|+. ..|.+.. +... ...|.-+
T Consensus 249 nGlavd~~~~~lY-~aD-----~~~~~I~~~d~-dG~~~~~~~~~~~~~P~giav-~~~~ly~-td~~-----~~~V~~~ 314 (386)
T 3v65_B 249 NGLTIDYAGRRMY-WVD-----AKHHVIERANL-DGSHRKAVISQGLPHPFAITV-FEDSLYW-TDWH-----TKSINSA 314 (386)
T ss_dssp EEEEEEGGGTEEE-EEE-----TTTTEEEEECT-TSCSCEEEECSSCSSEEEEEE-ETTEEEE-EETT-----TTEEEEE
T ss_pred eeEEEeCCCCEEE-EEE-----CCCCEEEEEeC-CCCeeEEEEECCCCCceEEEE-ECCEEEE-eeCC-----CCeEEEE
Confidence 6899998777655 342 24578999998 5543332 2222233466777 3333333 3332 2456666
Q ss_pred e-CCCee
Q 000992 256 E-RNGLE 261 (1196)
Q Consensus 256 e-~nGl~ 261 (1196)
+ .+|..
T Consensus 315 ~~~~G~~ 321 (386)
T 3v65_B 315 NKFTGKN 321 (386)
T ss_dssp ETTTCCS
T ss_pred ECCCCcc
Confidence 6 35543
|
| >2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B | Back alignment and structure |
|---|
Probab=96.51 E-value=0.038 Score=64.34 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhhcChHHHHHHHHhccChhHHHHHHHHhcCCcchh-----hHHHHHHhcCChhhhcccHHHHhhCHHHHH
Q 000992 877 SAEEALKHLLWLADSEAVYEAALGLYDLNLAAIVALNSQRDPKEF-----LPYLQELESMPPLLMRYTIDLRLQRFENAL 951 (1196)
Q Consensus 877 ~a~~al~~l~~L~d~~~Ly~~ALg~yD~~lal~vAq~sq~DpkeY-----lpfL~~L~~l~~~~~r~~Id~~L~ry~~Al 951 (1196)
.+++.|+-.+.+=|.+.=-+.||..=-+-=|+++|.. .+|.-| --|+++-..-. .|-..+
T Consensus 145 ~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~--gg~el~~~~vq~~Y~~k~~~~~-------------~~~rll 209 (399)
T 2pm7_A 145 NIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALD--SNNERLKESVKNAYFAKYGSKS-------------SLSRIL 209 (399)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTT--CCCHHHHHHHHHHHHHHHTTSC-------------HHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHh--cCHHHHHHHHHHHHHHhcccCc-------------hHHHHH
Confidence 5667777777777777777788877777778888853 666543 11222221101 122333
Q ss_pred HHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc---CCcH--HHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHH
Q 000992 952 KHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI---TDPA--KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAY 1026 (1196)
Q Consensus 952 ~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~---~d~~--~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y 1026 (1196)
..+.. + + +++.+.-. +. .-|+++|.+. .+++ +...+|..+|+-|+..++.+.|.+.|+.||+.+|.++++
T Consensus 210 ~~iv~-~-n-~~d~V~~~-~l-~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW 284 (399)
T 2pm7_A 210 YSISK-R-E-VDDLVENL-DV-SQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIW 284 (399)
T ss_dssp HHHHT-T-C-CHHHHHHB-CG-GGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHc-c-C-HHHHHhcC-Ch-hhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHH
Confidence 33332 2 2 34444432 56 7899999987 5678 999999999999999999999999999999999999998
Q ss_pred HH
Q 000992 1027 RA 1028 (1196)
Q Consensus 1027 ~~ 1028 (1196)
..
T Consensus 285 ~~ 286 (399)
T 2pm7_A 285 LS 286 (399)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.067 Score=54.40 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=50.0
Q ss_pred HhhCHHHHHH---HHHHcCCCc----HHHHHHHHHHHhcChHHHHhhc----------CCcHHHHHHHHHHHHHHhcccC
Q 000992 943 RLQRFENALK---HIVSMGDSY----HADCLNLMKKYAQLFPLGLKLI----------TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 943 ~L~ry~~Al~---~l~~~g~~~----~~~ale~~~~~~~ly~~AL~L~----------~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
..|+|++|.+ .+....... ...+. +.... +.|++|++.+ .++.....++...|.
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~------- 74 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGY-VYAFM-DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGM------- 74 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHH-HHHHT-TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHh-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-------
Confidence 4688888888 664421111 01111 12344 5566665554 133333334433343
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+|...|++++|++.| ++++.++...+.++.........+|..+...|++.+|...+.+
T Consensus 75 ------~~~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 75 ------VERMAGNWDAARRCF------LEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp ------HHHHTTCHHHHHHHH------HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ------HHHHcCCHHHHHHHH------HHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444444445444443 3344444443322222233445556666666666666555443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.43 E-value=0.94 Score=52.62 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=98.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc--ccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCC
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE--RASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSG 97 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG 97 (1196)
.+.+++||+.++.||.+.. .+.|+.++++ ... ..... +.... ...+.++++.+.+..|.. -+..+
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~--g~~~~~~~~~------~~~~~---~~~p~glavD~~~~~lY~~d~~~~ 181 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLD--RAHGVSSYDT------VISRD---IQAPDGLAVDWIHSNIYWTDSVLG 181 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC--------CCCEE------EECSS---CSCEEEEEEETTTTEEEEEETTTT
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcc--cCCCCCcceE------EEeCC---CCCcccEEEEecCCceEEEECCCC
Confidence 6789999999999999965 5678888883 211 10011 11111 246889999986555554 45678
Q ss_pred cEEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEe-C-CceEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTT-G-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s-~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
.|.+.+++++....+.. .-.....++..|.+..|..+. + .+.|...+.++....... ... -.
T Consensus 182 ~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-~~~--------------l~ 246 (400)
T 3p5b_L 182 TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TEN--------------IQ 246 (400)
T ss_dssp EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-CSS--------------CS
T ss_pred eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-ECC--------------CC
Confidence 89999999876553332 123478999999877776664 2 255655544433221111 000 01
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~ 216 (1196)
.-..|+|++++..|- ++- .....|+..|. +|....
T Consensus 247 ~P~glavd~~~~~lY-~aD-----~~~~~I~~~d~-dG~~~~ 281 (400)
T 3p5b_L 247 WPNGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRK 281 (400)
T ss_dssp CEEEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCCCE
T ss_pred ceEEEEEEeCCCEEE-EEE-----CCCCEEEEEeC-CCCccE
Confidence 337899998877665 442 24578999999 665433
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.11 Score=64.92 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=56.2
Q ss_pred EEeeecCCCEEEEEeCCC-------------------cEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc
Q 000992 25 FSALDIEQNRLFFASSAN-------------------NIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM 85 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~~-------------------~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp 85 (1196)
..++|++++.||+++.++ .|+.+|. .+++..|.....+.+.. ++.....+.......
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~--~tG~~~W~~~~~~~~~w--d~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP--DTGKLAWHYQVTPGDSW--DFTATQQITLAELNI 309 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCS--CCCCCSCEEEEEEEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC--CCCceeeEeecCCCccc--cccCCCCcEEEEecc
Confidence 478999999999998765 3999999 78887777653221111 010112333344445
Q ss_pred CCC---EEEEEECCCcEEEEECCCCeEE
Q 000992 86 EKE---ALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 86 d~~---~La~as~dG~I~lw~~~~~~~e 110 (1196)
||+ .|++++.+|.+..+|..+|++.
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 776 6889999999999999987653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.018 Score=68.89 Aligned_cols=137 Identities=9% Similarity=-0.066 Sum_probs=82.7
Q ss_pred hhcccHHHHhhCH-HHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHh
Q 000992 935 LMRYTIDLRLQRF-ENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLS 1001 (1196)
Q Consensus 935 ~~r~~Id~~L~ry-~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~ 1001 (1196)
+.++.+...+|+| ++|+++|.++ .++.. ..+ ..+... +.|++|++.| .+|. ..++..+|.-+.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~-g~~~~A~~~~~~al~~~p~--~~~~~~lg~~~~ 181 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG-EVYWKK-GDVTSAHTCFSGALTHCKN--KVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH-TCHHHHHHHHHHHHTTCCC--HHHHHHHHHHHT
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHhhCCC--HHHHHHHHHHHH
Confidence 4445666678899 9999988765 33221 222 233566 7899998887 4666 488889999999
Q ss_pred cc---------cCHHHHHHHHHhCCCH--------HHHHHHHHHc--------CCHHHHHHHHhhc-CCCHH--HHHHHH
Q 000992 1002 DV---------KCFEDAATTYFCCSSL--------EKAMKAYRAS--------GNWSGVLTVAGLL-KLGKD--EVAKLA 1053 (1196)
Q Consensus 1002 ~~---------~~~~eAa~~y~~ag~~--------~kAl~~y~~~--------g~w~~al~la~~l-~~~~~--~~~~l~ 1053 (1196)
.. ++|++|...|.++-.. -.--.+|... |+|++|+....+. ..++. ......
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 99 9999999998876211 1122444444 5566665443321 11220 112345
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+|..+...|+|.+|...|.+
T Consensus 262 ~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 262 LNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666666555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.029 Score=63.33 Aligned_cols=20 Identities=5% Similarity=-0.075 Sum_probs=13.8
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+.+...+|+|++|+.+|.++
T Consensus 140 ~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHH
Confidence 45556677888888777654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0033 Score=66.23 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...+.+
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666666666666655
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.33 E-value=1 Score=50.59 Aligned_cols=199 Identities=11% Similarity=0.026 Sum_probs=113.5
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG~I 99 (1196)
...+++||+.++.||.+.. .+.|+.++++ .......+ +..+ + ..+.++++.+.+..|.. -+..+.|
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~--g~~~~~~~--~~~~-----l---~~p~glavd~~~g~ly~~d~~~~~I 103 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFN--KTESVQNV--VVSG-----L---LSPDGLACDWLGEKLYWTDSETNRI 103 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETT--SSSCCCEE--EEEC-----C---SCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEcc--CCCceEEE--EcCC-----C---CCccEEEEEcCCCeEEEEECCCCEE
Confidence 5678899999999999854 5678899883 22211111 1111 1 35678888876655544 4566789
Q ss_pred EEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+++.++.....+. ..-..-..+++.|++..|..+.. .+.|...+.++....... ... + ..-
T Consensus 104 ~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~-----l---------~~P 168 (318)
T 3sov_A 104 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSE-----I---------YWP 168 (318)
T ss_dssp EEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-CSS-----C---------SCE
T ss_pred EEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-ECC-----C---------CCc
Confidence 99999886444332 21245688999998777766652 456665554443221110 000 0 123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+|+|++..|- ++- ...+.|..+|. +|....+. ...-+....++.. +..|.-+... ...|..+
T Consensus 169 nglavd~~~~~lY-~aD-----~~~~~I~~~d~-dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~-----~~~V~~~ 234 (318)
T 3sov_A 169 NGLTLDYEEQKLY-WAD-----AKLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLF--EDILYWTDWS-----THSILAC 234 (318)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEECSCCSCEEEEEEE--TTEEEEEETT-----TTEEEEE
T ss_pred cEEEEeccCCEEE-EEE-----CCCCEEEEEcC-CCCceEEEecCCCCCceEEEEe--CCEEEEEecC-----CCeEEEE
Confidence 6899999776554 332 24578999998 55433332 2222333556653 3333333332 3467667
Q ss_pred eC-CCee
Q 000992 256 ER-NGLE 261 (1196)
Q Consensus 256 e~-nGl~ 261 (1196)
++ +|..
T Consensus 235 ~~~~G~~ 241 (318)
T 3sov_A 235 NKYTGEG 241 (318)
T ss_dssp ETTTCCS
T ss_pred ECCCCCc
Confidence 76 4543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.059 Score=59.03 Aligned_cols=131 Identities=8% Similarity=-0.011 Sum_probs=79.8
Q ss_pred HHHhhCHHHHHHHHHHc---CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 941 DLRLQRFENALKHIVSM---GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 941 d~~L~ry~~Al~~l~~~---g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
...+|++++|++.+.++ .++.. -..-..+... +.|++|++++ .+|. ...++..+|..+...+++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS-NNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 45678899999888765 22211 1112233566 7888888877 2333 245677888899999999999
Q ss_pred HHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHH-----H------HHHHHHHHHHHHHHcCChHHH
Q 000992 1010 ATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKD-----E------VAKLAQELCEELQALGKPGEA 1069 (1196)
Q Consensus 1010 a~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~-----~------~~~l~~~la~~L~~~~~~~eA 1069 (1196)
...|.++-. +-....+|...|+|++|+....+. ...++ . .......++..+...|++.+|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999887621 223346777888888887655432 00111 0 233445556666666666666
Q ss_pred HHHH
Q 000992 1070 AKIA 1073 (1196)
Q Consensus 1070 a~i~ 1073 (1196)
..++
T Consensus 306 ~~~~ 309 (327)
T 3cv0_A 306 ELTY 309 (327)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.04 Score=58.34 Aligned_cols=137 Identities=8% Similarity=-0.070 Sum_probs=90.1
Q ss_pred cccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc----C--CcHHHHHHHHHHHHHHhccc
Q 000992 937 RYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI----T--DPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 937 r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~----~--d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
.+.+...+|+|++|++.|.++ .++... ..-.++... +.|++|++++ . .......++..+|..+...+
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQ-KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 355666789999999988764 222221 122334567 8899999888 3 34456678888999999999
Q ss_pred CHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|...|.++-. +.....+|...|++++|+....+. ...+.. ......++..+...|++.+|.+.+.+
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999987522 234446788888999888766542 112211 23445556666666666666666554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.13 Score=62.96 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=52.6
Q ss_pred EEeeecCCCEEEEEeCC----------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC
Q 000992 25 FSALDIEQNRLFFASSA----------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE 88 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~ 88 (1196)
..++|++.+.||+++.+ +.|+.+|. .+++..|.....+.+.- ++.....+.-+...+||+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~--~tG~~~W~~~~~~~d~~--d~~~~~~p~l~~~~~~G~ 314 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL--DTGMAKWGYQKTPHDEW--DFAGVNQMVLTDQPVNGK 314 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET--TTCCEEEEEESSTTCSS--CCCCCCCCEEEEEEETTE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEec--CCCcEEEEecCCCCccc--ccccCCCCEEEecccCCc
Confidence 46899999999998743 24999999 77777777653211100 000011222234446884
Q ss_pred ---EEEEEECCCcEEEEECCCCeE
Q 000992 89 ---ALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 89 ---~La~as~dG~I~lw~~~~~~~ 109 (1196)
.++.++.+|.+..+|..++++
T Consensus 315 ~~~~v~~~~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 315 MTPLLSHIDRNGILYTLNRENGNL 338 (571)
T ss_dssp EEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEEEeCCCcEEEEEECCCCCE
Confidence 677888999999999988765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.14 Score=56.25 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=37.4
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|++.| ++|+.++...+.++......+..+|..+...|+|.+|...|.+
T Consensus 162 g~~y~~~~~~~~A~~~~------~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 162 ANIYAENGYLKKGIDLF------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 45566666666666666 3444454444422222225677788888888888888887666
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.015 Score=58.87 Aligned_cols=76 Identities=7% Similarity=-0.080 Sum_probs=34.2
Q ss_pred ccHHHHhhCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 938 YTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~---g~~~~~~a---le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
+.+....|+|++|+.+|.++ .++..+-- -..+.+. +.|++|++.+ .+|. ...++..+|..+...+++
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDI-GLPNDAIESLKKFVVLDTT-SAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHcCCH
Confidence 44445566677776666543 22211111 1122344 5556665554 1221 223344445555555555
Q ss_pred HHHHHHHHh
Q 000992 1007 EDAATTYFC 1015 (1196)
Q Consensus 1007 ~eAa~~y~~ 1015 (1196)
++|...|.+
T Consensus 90 ~~a~~~~~~ 98 (184)
T 3vtx_A 90 QAAIDALQR 98 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.039 Score=64.97 Aligned_cols=163 Identities=9% Similarity=-0.061 Sum_probs=106.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcHHHH----HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYHADC----LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~a----le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
...+.+....|+|++|+..|.++ .+. ..+ -..+... +.|++|++.+ .+|. ...++...|..+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADR-NDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 34456667789999999988765 232 111 1223455 6777777776 2332 34467788888999
Q ss_pred ccCHHHHHHHHHhCC-----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 1003 VKCFEDAATTYFCCS-----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag-----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
.+++++|...|.++- + +-....+|...|+|++|+....+. ...+.. ......+|..+...|++.+|...|
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA-PEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999998762 1 223345667778888888665542 111111 246677889999999999999988
Q ss_pred HHhcC-------------CHHHHHHHHHH---hcCHHHHHHHHHh
Q 000992 1074 LDYCG-------------DVTNGISLLID---ARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~yl~-------------d~~~Ai~~y~~---~~~w~eA~rla~~ 1102 (1196)
.+.+. -.-....+|.+ .++|++|+....+
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 77432 12344566777 8889999876543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.31 Score=60.83 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcEEEEEC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLLLLHSV 104 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I~lw~~ 104 (1196)
.++.||+++.++.++.+|. .+++..|+....+... .... ....++ .++ .+.++.. +|.|.-+|.
T Consensus 116 ~~~~v~v~~~dg~l~alD~--~tG~~~W~~~~~~~~~-~~~~-~~~P~v-----~~~-~v~vg~~~~~~~~~g~v~a~D~ 185 (668)
T 1kv9_A 116 WGDKVYVGTLDGRLIALDA--KTGKAIWSQQTTDPAK-PYSI-TGAPRV-----VKG-KVIIGNGGAEYGVRGFVSAYDA 185 (668)
T ss_dssp EBTEEEEECTTSEEEEEET--TTCCEEEEEECSCTTS-SCBC-CSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEET
T ss_pred ECCEEEEEcCCCEEEEEEC--CCCCEeeeeccCCCCC-ccee-cCCCEE-----ECC-EEEEeCCCCCcCCCCEEEEEEC
Confidence 3678999998999999999 7787777764211100 0000 011111 133 4444443 588999999
Q ss_pred CCCeEE-Ee---eeec---------------------------Cc-EEEEEECCCCCEEEEEeCCce
Q 000992 105 DGNATE-VV---GRVE---------------------------GG-VRFISPSPDGDLLGVTTGFGQ 139 (1196)
Q Consensus 105 ~~~~~e-~v---g~~~---------------------------~~-I~~~awSPDg~~LA~~s~d~t 139 (1196)
.++++. .. +... +. ...++++|++.++.++++++.
T Consensus 186 ~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~ 252 (668)
T 1kv9_A 186 DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGS 252 (668)
T ss_dssp TTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEE
T ss_pred CCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCC
Confidence 887653 11 1000 01 124788999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.062 Score=59.74 Aligned_cols=133 Identities=8% Similarity=-0.047 Sum_probs=72.1
Q ss_pred hhCHHHHHHHHHHc----CCCcH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHH
Q 000992 944 LQRFENALKHIVSM----GDSYH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAAT 1011 (1196)
Q Consensus 944 L~ry~~Al~~l~~~----g~~~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~ 1011 (1196)
++++++|...|.++ .++.. .....+.... +.|++|.++| .+|.....++..||..+...+++++|..
T Consensus 77 ~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 155 (308)
T 2ond_A 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHH
Confidence 34456666665543 12211 1223344555 6667776666 2333222378888999988999999988
Q ss_pred HHHhCCCH---------HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1012 TYFCCSSL---------EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1012 ~y~~ag~~---------~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
.|.++-.. ..|.-.+...|++++|..+-.+. ...++. ..+...++..+...|++.+|..+|.+.+.
T Consensus 156 ~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88875321 11111111245555554333221 000111 34566777777777888888777776443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.38 Score=48.62 Aligned_cols=58 Identities=22% Similarity=0.084 Sum_probs=30.2
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
+.+|...|++++|++.+. +++.++...+ ++.........+|..+...|++.+|.+.+.
T Consensus 114 g~~~~~~g~~~~A~~~~~------~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYE------KSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHTCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH------HHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 445555566666666653 3444454433 222223344556666666666666655533
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.44 Score=54.44 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=36.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEee-------eecCcEEEEEECCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVG-------RVEGGVRFISPSPD 127 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg-------~~~~~I~~~awSPD 127 (1196)
..+++|+|.|||+.|.++...|.|.+++.++...+.+. .-.++...++|+||
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence 36899999999993445667899999987653211111 11457899999996
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0057 Score=69.29 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..+...|++.+|...|.+
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444444445555555444444
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.15 Score=58.23 Aligned_cols=58 Identities=19% Similarity=0.179 Sum_probs=42.1
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee-------ecCcEEEEEECCC----CCEEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR-------VEGGVRFISPSPD----GDLLGV 133 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~-------~~~~I~~~awSPD----g~~LA~ 133 (1196)
..+++|+|.|||..+++--..|.|++++.++++...+.. -.++...++++|| |.+-++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEE
Confidence 478999999999876655448999999877665543321 1467999999996 555444
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.39 Score=53.77 Aligned_cols=197 Identities=11% Similarity=0.113 Sum_probs=113.4
Q ss_pred cCCCEEEEEe--CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECC-----------
Q 000992 30 IEQNRLFFAS--SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSS----------- 96 (1196)
Q Consensus 30 ~~~~~l~~~s--~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~d----------- 96 (1196)
.+++.||+.+ +++.||..+.. ..+. .++. . +.+ --++|+|+.|.-+...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d--g~~~-~~l~---~----------~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID--GSNI-HKLS---N----------DTA--MYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT--SCSC-EEEE---E----------EEE--EEEEECSSEEEEEEECC------CCSS
T ss_pred EeCCEEEEEeCCCCceEEEEcCC--CCCC-EEcc---C----------Cce--eeEEEcCCEEEEEECCCCcccccceec
Confidence 5788899985 36679999873 2221 1222 1 122 2348899988877543
Q ss_pred ---CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe----CCceEEEEeccCceeeeeecccccCccccccCcc
Q 000992 97 ---GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT----GFGQILVMTHDWDLLYENPLEELAEGFDVHEPEL 169 (1196)
Q Consensus 97 ---G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s----~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf 169 (1196)
+.|...+.+++..+.+.. . .+..|||+|+.|+.+. +...|..|+.++.... .+...
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~--~lt~~----------- 147 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK--KIKNH----------- 147 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE--EEESS-----------
T ss_pred cCCCeEEEEeCCCCcceEeec--C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE--EEeCC-----------
Confidence 468888888876544432 1 2237999999999986 3445655554432211 11111
Q ss_pred ccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCC
Q 000992 170 SSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKC 249 (1196)
Q Consensus 170 ~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~ 249 (1196)
.+ .+|+|+|+.|..++. +..+|.+-+.+.+.....++ +.. ...+.|+|.+|+-+.... .
T Consensus 148 -----~~--~~~~~~g~~iy~t~~------g~~~Iy~~~l~g~~~~~l~~---~~~-~~~~~P~g~~iy~t~~~~----~ 206 (302)
T 3s25_A 148 -----YL--FTCNTSDRYFYYNNP------KNGQLYRYDTASQSEALFYD---CNC-YKPVVLDDTNVYYMDVNR----D 206 (302)
T ss_dssp -----CC--CCSEEETTEEEEECT------TTCCEEEEETTTTEEEEEEC---SCE-EEEEEEETTEEEEEEGGG----T
T ss_pred -----Cc--eEeeEECCEEEEEeC------CCceEEEEECCCCCEEEEeC---CCc-cceeeecCCEEEEEEcCC----C
Confidence 11 456778888874332 34678888884443333333 222 234669999999876532 1
Q ss_pred CeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 250 PSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 250 ~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
..|..-+.+|.... .|. +..+ ..|+|+|+.|.-
T Consensus 207 ~~I~~~~ldG~~~~--~Lt---~~~~--~~~~~~g~~Iy~ 239 (302)
T 3s25_A 207 NAIVHVNINNPNPV--VLT---EANI--EHYNVYGSLIFY 239 (302)
T ss_dssp TEEEEECSSSCCCE--ECS---CSCE--EEEEEETTEEEE
T ss_pred cEEEEEECCCCCeE--EEe---CCCc--ceEEECCCEEEE
Confidence 35655556664332 222 1223 347888887743
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.19 Score=61.78 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=53.3
Q ss_pred eEEeeecCCCEEEEEeC--------------------C----CcEEEEecccccccccceeeccccccccccCCCCCCEE
Q 000992 24 QFSALDIEQNRLFFASS--------------------A----NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSIT 79 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~--------------------~----~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 79 (1196)
...++|++.+.||+++. + +.|+.+|. .+++..|.....+.+.- ++.....+.
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~--~TG~~~W~~q~~~~d~w--d~~~~~~p~ 324 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP--SSGEVKWFYQHTPNDAW--DFSGNNELV 324 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT--TTCCEEEEEESSTTCCS--CCCCCCCCE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC--CCCCEEEEEeCCCCCcc--cccCCCCcE
Confidence 34689999999999874 2 46999999 78887777653221100 010001222
Q ss_pred EEEEc-cCCC---EEEEEECCCcEEEEECCCCeE
Q 000992 80 AFDYL-MEKE---ALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 80 ~v~~s-pd~~---~La~as~dG~I~lw~~~~~~~ 109 (1196)
-+... .+|+ .++.++.+|.+..+|..++++
T Consensus 325 l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 325 LFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp EEEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred EEeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 22332 5774 778899999999999988765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.95 Score=51.09 Aligned_cols=214 Identities=9% Similarity=-0.030 Sum_probs=128.0
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE---ccCCCEEEEEEC--
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY---LMEKEALIVGTS-- 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~---spd~~~La~as~-- 95 (1196)
...+..||...+.+|+.+- .+.|..|+. ..+.. ..+ .+| ++. ++-.+.-.+.+|.| -|+++.++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~--~~~~~-~~~-~~~-~~s-~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNP--KTQSH-FNV-VID-GAS-SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECT--TTCCE-EEE-CCT-TTC-CSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcC--CCCeE-EEE-ecC-Ccc-ccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 5678999999999999985 788999998 43322 122 111 111 00111224689999 489888776432
Q ss_pred -----------CCcEEEEECC---CCeE-EEee--ee-----------cCcEEEEEECCCCCEEEEEeCC-ceEEEEecc
Q 000992 96 -----------SGLLLLHSVD---GNAT-EVVG--RV-----------EGGVRFISPSPDGDLLGVTTGF-GQILVMTHD 146 (1196)
Q Consensus 96 -----------dG~I~lw~~~---~~~~-e~vg--~~-----------~~~I~~~awSPDg~~LA~~s~d-~tV~l~~~~ 146 (1196)
+.-|..+|+. +++. ..+. .+ ..+...++..|+|+.-++.+.. +.|...+.+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 4568889988 5433 2221 11 1258899999999999988877 788776766
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE--EEEe-cc---
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL--QASS-EL--- 220 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l--~~~~-e~--- 220 (1196)
+..+....+.... ....-+...|++.|||+.|+ +.. + .+.+..+|..+-.. .... ++
T Consensus 168 G~~~~~~~~~~~~----------~~~~~G~nGIv~~pdg~~Li-v~~-----~-~g~L~~fD~~~pv~~~v~~~~~G~~~ 230 (334)
T 2p9w_A 168 GKTVSTFAWESGN----------GGQRPGYSGITFDPHSNKLI-AFG-----G-PRALTAFDVSKPYAWPEPVKINGDFG 230 (334)
T ss_dssp SCCEEEEEECCCC----------SSSCCSCSEEEEETTTTEEE-EES-----S-SSSEEEEECSSSSCCCEECEESSCCC
T ss_pred CCEEeeeeecCCC----------cccccCcceEEEeCCCCEEE-EEc-----C-CCeEEEEcCCCCcceeecccccCCcc
Confidence 6533322111100 01112356899999999888 554 2 46777788742211 1111 01
Q ss_pred -CCCceeE-EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 221 -KAFMGAV-LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 221 -~~~~v~s-lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
..+. .. ++-.-+|+.+..+..- ...+++...+|++..+
T Consensus 231 ~~~~~-dgilp~~~~G~vllV~~~~-----~~~~~l~S~DgW~sa~ 270 (334)
T 2p9w_A 231 TLSGT-EKIVTVPVGNESVLVGARA-----PYAISFRSWDNWKSAN 270 (334)
T ss_dssp CCTTE-EEEEEEEETTEEEEEEEET-----TEEEEEECSSTTSEEE
T ss_pred cccCc-ccccccccCCEEEEEEcCC-----CCEEEEECCCCcceeE
Confidence 1111 33 4556688886665542 2357778888876544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.22 Score=59.62 Aligned_cols=157 Identities=7% Similarity=-0.012 Sum_probs=91.9
Q ss_pred CCEEEEEEcc-CCCEEEEEE-CCCcEEEEECCCCeEEEeeeec----CcEEEEEE-------CCCCCEEEEEeCCc----
Q 000992 76 DSITAFDYLM-EKEALIVGT-SSGLLLLHSVDGNATEVVGRVE----GGVRFISP-------SPDGDLLGVTTGFG---- 138 (1196)
Q Consensus 76 ~~v~~v~~sp-d~~~La~as-~dG~I~lw~~~~~~~e~vg~~~----~~I~~~aw-------SPDg~~LA~~s~d~---- 138 (1196)
..+..|+|.| +...|.++. ..+.|+++|..++.+..+.... .....++| ++||++|.++...+
T Consensus 139 ~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 139 SDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp CSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 3588999999 355555444 4467889999998877543321 24899999 99999777775543
Q ss_pred ---eEEEEeccC--ceee---eeecccccCccccccCccccCCCCeEEEEEccC-CceEEEeeccccccCCCCEEEEEEC
Q 000992 139 ---QILVMTHDW--DLLY---ENPLEELAEGFDVHEPELSSSFSFKSPISWRGD-GKYFATLSEFCNSSKLHKRLKVWER 209 (1196)
Q Consensus 139 ---tV~l~~~~~--d~~~---~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD-G~~lAsvss~d~~~~~d~~irVWd~ 209 (1196)
.|.+.++.- .... ...+.. + ..-..++..|+ |.+++ +.. ..+.|..+|.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-----------~----~~p~giavdp~~g~LYv-td~------~~g~V~r~d~ 276 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-----------Y----KQCNGATIHPINGELYF-NSY------EKGQVFRLDL 276 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-----------E----SCCCCEEECTTTCCEEE-EET------TTTEEEEECH
T ss_pred cCceEEEEecCCCCceeecccceeecc-----------C----CCceEEEEcCCCCeEEE-EEC------CCCEEEEEec
Confidence 244443321 1100 000000 0 12246788995 44444 332 3578999998
Q ss_pred C-------CCcE-----------E-E-EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 210 D-------SGTL-----------Q-A-SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 210 ~-------~G~l-----------~-~-~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
. +|.+ . . ...+..++...|+|+|+|+.|-.+... .+.|+-++.+|
T Consensus 277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~-----~h~I~kid~dg 341 (496)
T 3kya_A 277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN-----NHYFMRSDYDE 341 (496)
T ss_dssp HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT-----TTEEEEEEEET
T ss_pred ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC-----CCEEEEEecCC
Confidence 5 5554 1 1 112233455789999999965544332 35777665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.82 Score=51.94 Aligned_cols=79 Identities=8% Similarity=-0.006 Sum_probs=45.8
Q ss_pred ccHHHHhhCHHHHHHHHHHc-------CCCcHHHHH------HHHHHHhcChHHHHhhc----------CCcHHHHHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSM-------GDSYHADCL------NLMKKYAQLFPLGLKLI----------TDPAKMEQVLE 994 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~-------g~~~~~~al------e~~~~~~~ly~~AL~L~----------~d~~~~~~i~~ 994 (1196)
+.+..++|+|++|+.++.++ +......+. ..+... +.|++|++.+ .++.....++.
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 226 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLL 226 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556677777777766654 110111111 112344 5555555544 24445556777
Q ss_pred HHHHHHhcccCHHHHHHHHHhCC
Q 000992 995 AWADHLSDVKCFEDAATTYFCCS 1017 (1196)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y~~ag 1017 (1196)
..|.-+...++|++|...|.++-
T Consensus 227 ~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 227 NIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 78888888888888888887663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.041 Score=65.41 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhCC--------CHHHHHHHHHHcCCHHHHHHHHhhc-CCCHHH-----HHHHHHHHH
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCCS--------SLEKAMKAYRASGNWSGVLTVAGLL-KLGKDE-----VAKLAQELC 1057 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag--------~~~kAl~~y~~~g~w~~al~la~~l-~~~~~~-----~~~l~~~la 1057 (1196)
++..+|..+...+++++|..+|.++- -+.....+|...|+|++|+....+. ...+.. .......+|
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 44455566666666666666555431 1122234455555555555433321 000000 001123344
Q ss_pred HHHHHc----------CChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1058 EELQAL----------GKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1058 ~~L~~~----------~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
..+... |++.+|...|.+.+. + ...-..+|.+.+++++|+....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 555555 677777766665331 1 1233455666777777765443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=2.7 Score=51.23 Aligned_cols=69 Identities=6% Similarity=0.044 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC------CCcEEEEEC
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS------SGLLLLHSV 104 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~------dG~I~lw~~ 104 (1196)
.++.||+++.++.++.+|. .+++..|+... ...-....+. ...++ .++ .+.+++. +|.|.-+|.
T Consensus 114 ~~~~v~v~~~dg~l~alD~--~tG~~~W~~~~-~~~~~~~~~~-~~P~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~ 183 (571)
T 2ad6_A 114 GAGQIVKKQANGHLLALDA--KTGKINWEVEV-CDPKVGSTLT-QAPFV-----AKD-TVLMGCSGAELGVRGAVNAFDL 183 (571)
T ss_dssp ETTEEEEECTTSEEEEEET--TTCCEEEEEEC-CCGGGTCBCC-SCCEE-----ETT-EEEEECBCGGGTCCCEEEEEET
T ss_pred ECCEEEEEeCCCEEEEEEC--CCCCEEEEecC-CCCCccceec-cCCEE-----ECC-EEEEEecCCccCCCCEEEEEEC
Confidence 4788999999999999999 77777676541 1100000110 11111 133 4555554 789999999
Q ss_pred CCCeE
Q 000992 105 DGNAT 109 (1196)
Q Consensus 105 ~~~~~ 109 (1196)
.+++.
T Consensus 184 ~tG~~ 188 (571)
T 2ad6_A 184 KTGEL 188 (571)
T ss_dssp TTCCE
T ss_pred CCCcE
Confidence 88765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.034 Score=59.60 Aligned_cols=81 Identities=12% Similarity=-0.027 Sum_probs=46.4
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCC-----Cc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGD-----SY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHL 1000 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~-----~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L 1000 (1196)
...+.+...+|+|++|+..+.++-. +. .-..-..+... +.|++|++.+ .+|. ...++..+|..+
T Consensus 41 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 118 (272)
T 3u4t_A 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 3445566678888888887776521 11 11112233555 6677777766 2332 224556666666
Q ss_pred hcccCHHHHHHHHHhCC
Q 000992 1001 SDVKCFEDAATTYFCCS 1017 (1196)
Q Consensus 1001 ~~~~~~~eAa~~y~~ag 1017 (1196)
...++|++|...|.++-
T Consensus 119 ~~~~~~~~A~~~~~~al 135 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQI 135 (272)
T ss_dssp HHTTCHHHHHHHHGGGC
T ss_pred HHccCHHHHHHHHHHHh
Confidence 66777777766666653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.79 E-value=1.4 Score=49.95 Aligned_cols=174 Identities=9% Similarity=0.052 Sum_probs=85.7
Q ss_pred CCEEEEEECCCcEEEEECCCCeEE-E--eeeecC-----cEEEEEECC--CCCEEEEEeCCceEEEEec-cCceeeeeec
Q 000992 87 KEALIVGTSSGLLLLHSVDGNATE-V--VGRVEG-----GVRFISPSP--DGDLLGVTTGFGQILVMTH-DWDLLYENPL 155 (1196)
Q Consensus 87 ~~~La~as~dG~I~lw~~~~~~~e-~--vg~~~~-----~I~~~awSP--Dg~~LA~~s~d~tV~l~~~-~~d~~~~~~l 155 (1196)
+..+.+++.+|.|..+|..+++.. . .+...+ .+..+.-+| ++..|.+++.++.|..++. +++.+-....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~ 267 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence 345667777888888888776543 1 111000 000011112 2456666666777766552 2332211111
Q ss_pred ccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCC
Q 000992 156 EELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSG 234 (1196)
Q Consensus 156 ~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG 234 (1196)
.....+... ++..++ ++ .++.+..+|..+|+.....+... ....+... .+
T Consensus 268 ------------------~~~~~~~~~-~~~l~~--~~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~ 318 (376)
T 3q7m_A 268 ------------------GSVNDFIVD-GNRIYL--VD------QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YN 318 (376)
T ss_dssp ------------------CCEEEEEEE-TTEEEE--EE------TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ET
T ss_pred ------------------CCCCCceEE-CCEEEE--Ec------CCCeEEEEECCCCcEEEeecccCCCcccCCEE--EC
Confidence 112333333 444444 33 24689999998999887765221 22222222 24
Q ss_pred CeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEE-EEEccCCCeeEEEEccCCcceEEEEE
Q 000992 235 ANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVEL-LKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 235 ~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~-laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
..|..++.+ ..|..++ .+|.....+.+.. ..+.. ... .+..|.+++.++ .|..|+
T Consensus 319 ~~l~v~~~~------g~l~~~d~~tG~~~~~~~~~~---~~~~~~~~~--~~~~l~v~~~~G---~l~~~~ 375 (376)
T 3q7m_A 319 GNLVVGDSE------GYLHWINVEDGRFVAQQKVDS---SGFQTEPVA--ADGKLLIQAKDG---TVYSIT 375 (376)
T ss_dssp TEEEEECTT------SEEEEEETTTCCEEEEEECCT---TCBCSCCEE--ETTEEEEEBTTS---CEEEEE
T ss_pred CEEEEEeCC------CeEEEEECCCCcEEEEEecCC---CcceeCCEE--ECCEEEEEeCCC---EEEEEe
Confidence 556556553 4688888 5676555444321 11111 111 234566666666 566664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.088 Score=56.28 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=88.2
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHc---CCC----cHHHHHHHHHHHhcChHHHHhhc-------CCcHHHHHHHHHHHHH
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSM---GDS----YHADCLNLMKKYAQLFPLGLKLI-------TDPAKMEQVLEAWADH 999 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~---g~~----~~~~ale~~~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A~~ 999 (1196)
.++.+.+....|+|++|+..|.++ .+. ....+. ..... +.|++|++.+ .++......+..+|..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~-~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAV-CYYEL-AKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHH-HHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344556666677888888887764 111 123333 44556 7777777776 2333445567788888
Q ss_pred HhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 000992 1000 LSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAA 1070 (1196)
Q Consensus 1000 L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa 1070 (1196)
+...+++++|...|.++-. +.....+|...|+|++|+....+. ...+.. ......+|..+...+++.+|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887632 223346777888888888766542 222222 235556663444456888888
Q ss_pred HHHHHh
Q 000992 1071 KIALDY 1076 (1196)
Q Consensus 1071 ~i~~~y 1076 (1196)
..|.+.
T Consensus 163 ~~~~~a 168 (272)
T 3u4t_A 163 SSFVKV 168 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.67 Score=50.74 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|++.| ++|+.++...+.+......++..+|..+...|+|.+|...+.+
T Consensus 162 g~~y~~~g~~~~A~~~~------~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLF------EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555556666666655 3344455554334444455667777777777777777666443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.29 Score=46.76 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.....+|..+...|++.+|...+.+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~ 114 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLK 114 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445556666666666666555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.015 Score=68.73 Aligned_cols=112 Identities=9% Similarity=-0.128 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhCC----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 000992 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCS----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEE 1059 (1196)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~ 1059 (1196)
....++...|..+...++|++|...|.++- + +-....+|...|++++|+....+. ...+.. ......++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~ 313 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-SSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-HHHHHHHHHH
Confidence 345566677777777777777777776641 1 112234555556666555443321 111111 2345566666
Q ss_pred HHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHH
Q 000992 1060 LQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1060 L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla 1100 (1196)
+...|++.+|...|.+.+. + .-....+|.+.++|++|+...
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 361 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF 361 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677777777776665321 1 122334455556666665543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.64 E-value=3.6 Score=46.73 Aligned_cols=106 Identities=6% Similarity=-0.071 Sum_probs=58.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC---CCEEEEEEC---
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME---KEALIVGTS--- 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd---~~~La~as~--- 95 (1196)
.+.++++++++..||++...+.|+.++. ..+.. ..+.+++. ......+.+..|+++|| +..|.++..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~--~g~~~-~~~~~~~~----v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA--GKGLS-APLSGVPD----VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET--TTEEC-CCCBSCCC----CCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC--CCcee-eEecCCcc----cccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 6788999999875777777788888875 22211 01221110 00111357899999997 555554432
Q ss_pred -----CCcEEEEECCCC--eE---E-Eeeeec------CcEEEEEECCCCCEEEEE
Q 000992 96 -----SGLLLLHSVDGN--AT---E-VVGRVE------GGVRFISPSPDGDLLGVT 134 (1196)
Q Consensus 96 -----dG~I~lw~~~~~--~~---e-~vg~~~------~~I~~~awSPDg~~LA~~ 134 (1196)
...|.-++.+.+ .+ + ++.... ..-..++|+|||.+.++.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 224655665432 22 2 211111 113579999999655554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.23 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
......+|..+...|++.+|...|.+
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34566677777777777777777655
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.28 Score=58.23 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=40.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee---------ecCcEEEEEECCC----CCEEEEEe
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR---------VEGGVRFISPSPD----GDLLGVTT 135 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~---------~~~~I~~~awSPD----g~~LA~~s 135 (1196)
..+++|+|.|||+.+++-...|.|++++..++..+.+.. -++++..++|+|| |.+-++-+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 468999999999977664444579999876555442211 1467889999995 44444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.013 Score=61.91 Aligned_cols=52 Identities=25% Similarity=0.199 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~~---~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+....+|..+...|++.+|...|.+.+. +.+ .-..+|.+.+++++|+....+
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4556777777788888888877776432 221 223455566777777655443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.39 Score=59.03 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=54.4
Q ss_pred EEeeecCCCEEEEEeCC----------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEc-cCC
Q 000992 25 FSALDIEQNRLFFASSA----------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYL-MEK 87 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~s-pd~ 87 (1196)
..++|++.+.||+++.+ +.|+.+|. .+++..|...+.+.+.- ++.....+.-+... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~--~TG~~~W~~q~~~~d~w--d~d~~~~p~l~d~~~~~G 320 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA--DTGEAKFGYQKTPHDEW--DYAGVNVMMLSEQKDKDG 320 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET--TTCCEEEEEESSTTCSS--CCCCCCCCEEEEEECTTS
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC--CCCceeeEeecCCCccc--cccCCCccEEEeccccCC
Confidence 46899999999999765 36999999 77887777654332210 11111122223333 578
Q ss_pred ---CEEEEEECCCcEEEEECCCCeE
Q 000992 88 ---EALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 88 ---~~La~as~dG~I~lw~~~~~~~ 109 (1196)
..++.++.+|.+..+|..++++
T Consensus 321 ~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 321 KARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp CEEEEEEEECTTSEEEEEETTTCCE
T ss_pred cEEEEEEEECCCcEEEEEECCCCCE
Confidence 5677789999999999988765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.55 Score=52.99 Aligned_cols=163 Identities=9% Similarity=0.036 Sum_probs=94.0
Q ss_pred CEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEEEeeeecC---------cEEEEEE---CCCCCEEEEEe--------
Q 000992 77 SITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATEVVGRVEG---------GVRFISP---SPDGDLLGVTT-------- 135 (1196)
Q Consensus 77 ~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e~vg~~~~---------~I~~~aw---SPDg~~LA~~s-------- 135 (1196)
..-++.|.+....|. +....|+|..|++.++..+.+ ..++ .+..+.| -|+|.+++++.
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 455788988555554 444799999999987655433 2222 3689999 79988888644
Q ss_pred -----CCceEEEEecc----CceeeeeecccccCc-cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCC-CEE
Q 000992 136 -----GFGQILVMTHD----WDLLYENPLEELAEG-FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLH-KRL 204 (1196)
Q Consensus 136 -----~d~tV~l~~~~----~d~~~~~~l~~~~~~-~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d-~~i 204 (1196)
++..|..++.. +..+.-..+...... +..+. ........++--++|+..+ +.+. . ..|
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g----~~~~~~nDvavD~~GnaYV-t~s~------~~~~I 161 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAG----KRPFGVVQSAQDRDGNSYV-AFAL------GMPAI 161 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHS----SCCEEEEEEEECTTSCEEE-EEEE------SSCEE
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccc----ccccCCceeEECCCCCEEE-eCCC------CCCeE
Confidence 24556555532 444333332211100 00000 0012357899999999887 4542 2 455
Q ss_pred EEEECCCCcEEEEe--ccC----CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC
Q 000992 205 KVWERDSGTLQASS--ELK----AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN 258 (1196)
Q Consensus 205 rVWd~~~G~l~~~~--e~~----~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n 258 (1196)
-..++ +|+....+ +.. ..-...|++.|+|++|...... ..+.-|+.+
T Consensus 162 ~rV~p-dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~------g~L~~fD~~ 214 (334)
T 2p9w_A 162 ARVSA-DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP------RALTAFDVS 214 (334)
T ss_dssp EEECT-TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS------SSEEEEECS
T ss_pred EEEeC-CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCC------CeEEEEcCC
Confidence 56677 66644432 110 1113689999999988776542 346666654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.94 Score=50.61 Aligned_cols=180 Identities=7% Similarity=0.008 Sum_probs=103.2
Q ss_pred EeeecCCCEEEEEeCC--------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE
Q 000992 26 SALDIEQNRLFFASSA--------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI 91 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La 91 (1196)
.-+.++++.||.++.. ..|+..++ ...+. .. |.. +. +..|+|+++.|+
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~--dg~~~-~~-------l~~------~~--~~~~s~~g~~Iy 119 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR--NGHGS-TV-------LDP------DP--CIYASLIGNYIY 119 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEET--TSCCC-EE-------EEC------SC--EEEEEEETTEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC--CCCcc-eE-------eec------CC--ccEEEEeCCEEE
Confidence 4467899999999653 35788777 33322 11 111 11 236789999999
Q ss_pred EEE----CCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCcccccc
Q 000992 92 VGT----SSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHE 166 (1196)
Q Consensus 92 ~as----~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~ 166 (1196)
.+. .+..|...+.++...+.+-.+ .+ .+|+|+|+.|...+. ..+|..+..+..... .+...
T Consensus 120 ~~~~~~~~~~~Iy~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l~~~-------- 185 (302)
T 3s25_A 120 YLHYDTQTATSLYRIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LFYDC-------- 185 (302)
T ss_dssp EEEESSSSCEEEEEEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EEECS--------
T ss_pred EEeecCCCCceEEEEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EEeCC--------
Confidence 876 344566677777555533322 22 568999999998875 567877764433211 11111
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCC
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSE 246 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~ 246 (1196)
. ..+.+.|+|.+++. +... ....|..-+. +|.-...+. +... ..|+|+|++|..++...
T Consensus 186 --------~-~~~~~~P~g~~iy~-t~~~----~~~~I~~~~l-dG~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~-- 244 (302)
T 3s25_A 186 --------N-CYKPVVLDDTNVYY-MDVN----RDNAIVHVNI-NNPNPVVLT--EANI--EHYNVYGSLIFYQRGGD-- 244 (302)
T ss_dssp --------C-EEEEEEEETTEEEE-EEGG----GTTEEEEECS-SSCCCEECS--CSCE--EEEEEETTEEEEEECSS--
T ss_pred --------C-ccceeeecCCEEEE-EEcC----CCcEEEEEEC-CCCCeEEEe--CCCc--ceEEECCCEEEEEECCC--
Confidence 1 12345699999984 3321 1235555566 443333322 1222 45899999997664321
Q ss_pred CCCCeEEEEeCCCe
Q 000992 247 NKCPSIVFYERNGL 260 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl 260 (1196)
...|..-+.+|.
T Consensus 245 --~~~i~~~~~DG~ 256 (302)
T 3s25_A 245 --NPALCVVKNDGT 256 (302)
T ss_dssp --SCEEEEEETTSC
T ss_pred --CcEEEEEECCCC
Confidence 245655566664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.50 E-value=4.2 Score=45.50 Aligned_cols=161 Identities=11% Similarity=0.004 Sum_probs=97.1
Q ss_pred CEEEEEEccCCCEEEEE-ECCCcEEEEECCCCeE--EEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCceeee
Q 000992 77 SITAFDYLMEKEALIVG-TSSGLLLLHSVDGNAT--EVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~~~--e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d~~~~ 152 (1196)
.+.+++|.+.++.|..+ ...+.|..++.+++.. .++..--.....+++.|.+..|-.+ +..+.|.+.+.+......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 57899999976666544 5667888899887532 1222112346678888865555444 456678776655432211
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEc
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWM 231 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slaws 231 (1196)
. .... -..-..|+..|++.++. ++.. .....|...+. +|....+. ...-..-..|+|+
T Consensus 116 l-~~~~--------------~~~P~giavdp~~g~ly-~td~----~~~~~I~r~~~-dG~~~~~~~~~~l~~Pnglavd 174 (318)
T 3sov_A 116 L-FWQE--------------LDQPRAIALDPSSGFMY-WTDW----GEVPKIERAGM-DGSSRFIIINSEIYWPNGLTLD 174 (318)
T ss_dssp E-ECSS--------------CSSEEEEEEEGGGTEEE-EEEC----SSSCEEEEEET-TSCSCEEEECSSCSCEEEEEEE
T ss_pred E-EeCC--------------CCCccEEEEeCCCCEEE-EEec----CCCCEEEEEEc-CCCCeEEEEECCCCCccEEEEe
Confidence 1 1000 12336889998655444 3321 12467888898 77544433 2222345899999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
|++..|-.+... ...|..++.+|....
T Consensus 175 ~~~~~lY~aD~~-----~~~I~~~d~dG~~~~ 201 (318)
T 3sov_A 175 YEEQKLYWADAK-----LNFIHKSNLDGTNRQ 201 (318)
T ss_dssp TTTTEEEEEETT-----TTEEEEEETTSCSCE
T ss_pred ccCCEEEEEECC-----CCEEEEEcCCCCceE
Confidence 988888776543 367888888875443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.68 Score=55.44 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCh
Q 000992 987 AKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKP 1066 (1196)
Q Consensus 987 ~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~ 1066 (1196)
......+..+|.-+..+|+|++|..+|++ |++.+.+ .++.+.-++...+..||..+..+|+|
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~------aL~i~~~------------~lG~~Hp~~a~~l~nLa~~~~~~G~~ 409 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARR------MVDGYMK------------LYHHNNAQLGMAVMRAGLTNWHAGHI 409 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH------------HSCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHH------HHHHHHH------------HcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence 34666777777777777777777777753 5555432 22333335556777888888889999
Q ss_pred HHHHHHHHH
Q 000992 1067 GEAAKIALD 1075 (1196)
Q Consensus 1067 ~eAa~i~~~ 1075 (1196)
++|..+|.+
T Consensus 410 ~eA~~~~~~ 418 (490)
T 3n71_A 410 EVGHGMICK 418 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988888666
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.14 Score=54.66 Aligned_cols=95 Identities=15% Similarity=-0.012 Sum_probs=54.5
Q ss_pred hhCHHHHHHHHHHcCCC----cHHHH------HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHH
Q 000992 944 LQRFENALKHIVSMGDS----YHADC------LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~----~~~~a------le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
-++|++|+..|.++-.. ....+ -...... +.|++|++.+ .+|. ...++..+|..+...++|++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 47788888888765321 11111 1222456 7788888777 2443 23456666777777777777
Q ss_pred HHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 000992 1009 AATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 1009 Aa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~ 1040 (1196)
|...|.++-. +-....+|...|++++|+....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 135 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777765521 1122355666666666665443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.055 Score=68.21 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=34.3
Q ss_pred cHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCH
Q 000992 939 TIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCF 1006 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~ 1006 (1196)
.+...+|+|++|++.|.++ .++.. ..+ ..+.+. +.|++|++.| .+|+ ....+..+|.-|...+++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg-~~l~~~-g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQ-GKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH-HHHHHT-TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 4444566666666666543 22211 111 122344 5555555554 2332 223444555555555555
Q ss_pred HHHHHHHHh
Q 000992 1007 EDAATTYFC 1015 (1196)
Q Consensus 1007 ~eAa~~y~~ 1015 (1196)
++|...|.+
T Consensus 94 ~~A~~~~~k 102 (723)
T 4gyw_A 94 QGALQCYTR 102 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.064 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...+.+
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 444556666666666666666555
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.039 Score=58.07 Aligned_cols=137 Identities=14% Similarity=0.073 Sum_probs=75.3
Q ss_pred hcccHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHH----------HhcChHHHHhhc-----CCcHHHHHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKK----------YAQLFPLGLKLI-----TDPAKMEQVL 993 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~----------~~~ly~~AL~L~-----~d~~~~~~i~ 993 (1196)
..+.+...+|++++|+..|.++ .++.. ..+.-+... . +.|++|++.+ .+|. ...++
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~P~-~~~~~ 121 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGK-GYLEQALSVLKDAERVNPR-YAPLH 121 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHH-HHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccc-cCHHHHHHHHHHHHHhCcc-cHHHH
Confidence 3456666789999999988764 33321 222222222 1 3467777666 2443 33566
Q ss_pred HHHHHHHhcccCHHHHHHHHHhCCC-------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCC
Q 000992 994 EAWADHLSDVKCFEDAATTYFCCSS-------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGK 1065 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~ag~-------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~ 1065 (1196)
..+|.-+...+++++|...|.++-. +-.-..+|...|++++|+....+. ..+++. ......++..+...|+
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccC
Confidence 7889999999999999999988621 122335677888888887655431 112222 2345566666666666
Q ss_pred hHHHHHHHHH
Q 000992 1066 PGEAAKIALD 1075 (1196)
Q Consensus 1066 ~~eAa~i~~~ 1075 (1196)
+.+|...|.+
T Consensus 201 ~~~A~~~~~~ 210 (217)
T 2pl2_A 201 AEEAARAAAL 210 (217)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 6666555443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.39 E-value=3.4 Score=52.41 Aligned_cols=199 Identities=11% Similarity=0.012 Sum_probs=112.3
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||..++.||.+.. .+.|+.++++.........+ +.... ...+.+|++.+.++.|..+ +..+.|
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~------vi~~~---l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------VISRD---IQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------EECSS---CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE------EEecC---CCCcceeeeeecCCcEEEEecCCCeE
Confidence 6788999999999999865 55688888831100011111 11111 1457788998888666544 567889
Q ss_pred EEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEe-CC-ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTT-GF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s-~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.++++....++.. .-.....+++.|.+..|-.+. +. +.|...+.++.....+.... -..-
T Consensus 496 ~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~---------------l~~P 560 (791)
T 3m0c_C 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN---------------IQWP 560 (791)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS---------------CSCE
T ss_pred EEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC---------------CCCc
Confidence 999999876554332 224578999999877666654 33 55665554443222111000 0133
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+..+++..|- ++- .....|++.+. +|....+. .....+...++...++..|..+... ...|...
T Consensus 561 ~GLavD~~~~~LY-waD-----~~~~~I~~~d~-dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~-----~~~I~~~ 628 (791)
T 3m0c_C 561 NGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSA 628 (791)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT-----TTEEEEE
T ss_pred eEEEEecCCCeEE-EEe-----CCCCcEEEEec-CCCceEEEecCCCccCCCCEEEEeCCEEEEEECC-----CCEEEEE
Confidence 6799997666554 342 23578999999 66544333 2212222333333355555555443 2456555
Q ss_pred e
Q 000992 256 E 256 (1196)
Q Consensus 256 e 256 (1196)
+
T Consensus 629 d 629 (791)
T 3m0c_C 629 N 629 (791)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.074 Score=63.43 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=82.5
Q ss_pred cCh-HHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH-------HHHHHHHHHc---------CC
Q 000992 974 QLF-PLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL-------EKAMKAYRAS---------GN 1031 (1196)
Q Consensus 974 ~ly-~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~-------~kAl~~y~~~---------g~ 1031 (1196)
+.| ++|++.| .+|. ...++..+|.-+...++|++|...|.++-.. .....+|... |+
T Consensus 116 g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~ 194 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH 194 (474)
T ss_dssp SSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhh
Confidence 455 5665555 2333 3457778899999999999999999887221 1122445555 77
Q ss_pred HHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHc--------CChHHHHHHHHHhcC-CH---------HHHHHHHHHhcC
Q 000992 1032 WSGVLTVAGLL-KLGKDEVAKLAQELCEELQAL--------GKPGEAAKIALDYCG-DV---------TNGISLLIDARD 1092 (1196)
Q Consensus 1032 w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~--------~~~~eAa~i~~~yl~-d~---------~~Ai~~y~~~~~ 1092 (1196)
|++|+....+. ..+++. ......+|..+... |+|.+|...|.+.+. ++ -....+|.+.++
T Consensus 195 ~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 195 VMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777655431 112222 24566778888777 889999999888543 33 234467778899
Q ss_pred HHHHHHHHHh
Q 000992 1093 WEEALRVAFM 1102 (1196)
Q Consensus 1093 w~eA~rla~~ 1102 (1196)
|++|+....+
T Consensus 274 ~~~A~~~~~~ 283 (474)
T 4abn_A 274 YGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999875543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.027 Score=55.89 Aligned_cols=100 Identities=14% Similarity=0.135 Sum_probs=52.5
Q ss_pred cChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 000992 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~ 1040 (1196)
+.|++|++++ .+|. ...++..+|..+...+++++|...|.++-. +-....+|...|++++|+....
T Consensus 56 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 56 GAVDRGTELLERSLADAPD-NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 5555555554 1222 234555667777777777777777766421 1122355666677777665544
Q ss_pred hc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1041 LL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1041 ~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+. ...+.. ......+|..+...|++.+|...+.+
T Consensus 135 ~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 135 IALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 001111 23445556666566666666555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.48 Score=45.18 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=28.1
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+|...|++++|++.+ ++++.++...+ ++.........+|..+...|++.+|...+.+
T Consensus 97 ~~~~~~~~~~~A~~~~------~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 97 NTYTLLQDYEKAIDYH------LKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHTTCHHHHHHHH------HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH------HHHHHHHHHcc-chHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3344444455555444 33444444433 2223334455566666666666666555443
|
| >3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.081 Score=62.14 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=85.3
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCH-------HHHHHHHHhCCCHHH
Q 000992 951 LKHIVSMGDSYHADCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCF-------EDAATTYFCCSSLEK 1021 (1196)
Q Consensus 951 l~~l~~~g~~~~~~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~-------~eAa~~y~~ag~~~k 1021 (1196)
++.+.-.|+ +++|+++..+. ++|..||=|. .+++.++.+...|...-...+.. --+.++=..+|+...
T Consensus 157 I~~~Ll~G~--~e~Av~~al~~-~lwa~ALlLAs~~g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~ 233 (441)
T 3mzk_B 157 VLAFLQTGN--HDEALRLALSK-RDYAIALLVGSLMGKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKM 233 (441)
T ss_dssp HHHHHHTTC--HHHHHHHHHHT-TCHHHHHHHHHTSCHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCC--HHHHHHHHHhC-CcHHHHHHHHHhcCHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHH
Confidence 344445677 89999999999 9999999998 89999999998777631111111 112444556799999
Q ss_pred HHHHHH--------HcCCHHHHHHHHhhcCCCHH--------HHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1022 AMKAYR--------ASGNWSGVLTVAGLLKLGKD--------EVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1022 Al~~y~--------~~g~w~~al~la~~l~~~~~--------~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
+++.+. ...+|++.+.+.-...-+.+ ...+.+.+|++.|.+.|+..+|--||+- ++
T Consensus 234 ~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~-a~ 305 (441)
T 3mzk_B 234 AIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFII-GN 305 (441)
T ss_dssp HHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-TT
T ss_pred HHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhc-cC
Confidence 998763 23489999975543221211 2346888999999999987767777665 54
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.068 Score=67.15 Aligned_cols=200 Identities=14% Similarity=0.062 Sum_probs=105.6
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEeccccccc-ccceeeccccccccccCCCCCCEEEEEEccCCCEEEE-EECCCc
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNE-RASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIV-GTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~-as~dG~ 98 (1196)
.+.+++||+.++.||.+.. .+.|+.++++ ... .......++.+ ...+.+|++.+.+..|.+ -...+.
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~--g~~~~~~~~~~i~~~--------~~~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLD--RAHGVSSYDTVISRD--------IQAPDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESC--CCCC-CCCCCBCCSC--------C--CCCEECCCSSSBCEECCTTTSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecC--CCCCCcceEEEEeCC--------CCCcceEEEEeeCCcEEEEeccCCe
Confidence 5678899999999999854 5679999883 200 00000000111 124566788765554444 356788
Q ss_pred EEEEECCCCeEEEeeee-cCcEEEEEECCCCCEEEEEe-CC-ceEEEEeccCceeeeeecccccCccccccCccccCCCC
Q 000992 99 LLLHSVDGNATEVVGRV-EGGVRFISPSPDGDLLGVTT-GF-GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~~-~~~I~~~awSPDg~~LA~~s-~d-~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
|.+++.++.....+... -.....++++|++..|..+. +. +.|...+.++..... +... .+ ..
T Consensus 477 I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~---------~l----~~ 541 (699)
T 1n7d_A 477 VSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---------NI----QW 541 (699)
T ss_dssp EEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS---------SC----SS
T ss_pred EEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC---------CC----CC
Confidence 99999988765533221 13356788999766665543 22 455443322211110 0000 00 12
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc---CCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL---KAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~---~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
-..|+|+|++..|- ++. ...++|.+++. .|....+.-. .-.....|++-. ..|..+... .+.|
T Consensus 542 PnGlavd~~~~~LY-~aD-----~~~~~I~~~d~-dG~~~~~~~~~~~~~~~P~glavd~--~~lywtd~~-----~~~V 607 (699)
T 1n7d_A 542 PNGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDII-----NEAI 607 (699)
T ss_dssp CCCEEECTTTCCEE-EEE-----TTTTEEEEECS-SSSCCEEECCCSSSCSSCCCCEEET--TEEEEECST-----TTCE
T ss_pred ccEEEEeccCCEEE-EEe-----cCCCeEEEEcc-CCCceEEEEecCCcCCCceEeEEEC--CEEEEEeCC-----CCeE
Confidence 25799999876554 332 23578999999 5643333321 112223445433 334333332 3467
Q ss_pred EEEeC-CCe
Q 000992 253 VFYER-NGL 260 (1196)
Q Consensus 253 ~~~e~-nGl 260 (1196)
..+++ +|.
T Consensus 608 ~~~d~~~G~ 616 (699)
T 1n7d_A 608 FSANRLTGS 616 (699)
T ss_dssp EEEETTTEE
T ss_pred EEEEccCCC
Confidence 77775 343
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.19 Score=56.31 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=38.8
Q ss_pred HhhCHHHHHHHHHHc---CCC--cH---HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHH
Q 000992 943 RLQRFENALKHIVSM---GDS--YH---ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 943 ~L~ry~~Al~~l~~~---g~~--~~---~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.+|+|++|+..|.++ .+. .. -..-.++... +.|++|++.+ .+|.. ..++..+|..+...+++++|
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS-GEYDKAVDCFTAALSVRPND-YLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHcCCHHHH
Confidence 789999999998865 222 11 1112344566 7888888877 23332 23444444444444444444
Q ss_pred HHHHH
Q 000992 1010 ATTYF 1014 (1196)
Q Consensus 1010 a~~y~ 1014 (1196)
...|.
T Consensus 271 ~~~~~ 275 (368)
T 1fch_A 271 VAAYR 275 (368)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.089 Score=54.02 Aligned_cols=112 Identities=9% Similarity=-0.189 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHc-CCHHHHHHHHhhcC---CCHHHHHHHHHHHH
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRAS-GNWSGVLTVAGLLK---LGKDEVAKLAQELC 1057 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~-g~w~~al~la~~l~---~~~~~~~~l~~~la 1057 (1196)
..++..+|..+...+++++|...|.++-. +-....+|... |+|++|+....+.- ..+.. ......+|
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~ 120 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-YIANLNKG 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-HHHHHHHH
Confidence 34667788888999999999999987622 12234677788 99999987665431 12222 35677889
Q ss_pred HHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1058 EELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1058 ~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
..+...|++.+|...|.+.+. + .-....+|.+.++|++|+....+
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999877432 2 23445678889999999876554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.037 Score=57.97 Aligned_cols=137 Identities=8% Similarity=-0.060 Sum_probs=85.5
Q ss_pred hcccHHHHhhCHHHHHHHHHHc---CCCcHH---HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000992 936 MRYTIDLRLQRFENALKHIVSM---GDSYHA---DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~---g~~~~~---~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..+.+...+|+|++|++.+.++ .+.... ..-.+.... +.|++|++++ .+|. ...++..+|..+...+
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~ 139 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK-EMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLE 139 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 3456666788999999988765 222111 112334566 7888888877 2332 2446777889899999
Q ss_pred CHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|..+|.++-. +.....+|...|++++|+....+. ...+.. ......+|..+...|++.+|...|.+
T Consensus 140 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 140 QPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999887632 122346677778888887655432 111111 23455666666677777777666555
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=7 Score=49.52 Aligned_cols=163 Identities=13% Similarity=-0.020 Sum_probs=98.9
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCCC----e-EEEeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDGN----A-TEVVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~~----~-~e~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+|+|.+....|..+ ...+.|..+++++. . ..+++..-.....+++.+.+..|-.+ +..+.|.+.+.++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 478999999966655544 45677888888763 1 22333223456778898888666555 45677777665443
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-CCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-KAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-~~~~v~s 227 (1196)
....+.... -..-..|+..|.+.+|- ++.. .....|.+.+. +|....++-. .-.+...
T Consensus 504 ~~~~l~~~~---------------l~~P~gIaVDp~~g~LY-wtD~----g~~~~I~~~~~-dG~~~~~lv~~~l~~P~G 562 (791)
T 3m0c_C 504 KRKTLFREN---------------GSKPRAIVVDPVHGFMY-WTDW----GTPAKIKKGGL-NGVDIYSLVTENIQWPNG 562 (791)
T ss_dssp SEEEEEECT---------------TCCEEEEEEETTTTEEE-EEEC----SSSCEEEEEET-TSCCEEEEECSSCSCEEE
T ss_pred eEEEEEeCC---------------CCCcceEEEecCCCCEE-EecC----CCCCeEEEEec-CCCceEEEEeCCCCCceE
Confidence 322211111 02346899998744443 3321 12368999999 7766555432 2245689
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
|++.|.+..|..+... ...|..++.+|.....
T Consensus 563 LavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~ 594 (791)
T 3m0c_C 563 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKT 594 (791)
T ss_dssp EEEETTTTEEEEEETT-----TTEEEEEETTSCSCEE
T ss_pred EEEecCCCeEEEEeCC-----CCcEEEEecCCCceEE
Confidence 9999988888777543 3578888888865443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=94.94 E-value=1.1 Score=53.57 Aligned_cols=100 Identities=10% Similarity=-0.031 Sum_probs=61.5
Q ss_pred ChHHHHhhc-CCcHHHHHHHHHHHHHHhc-------ccCHH-------HHHHHHHhCCC---H------HHHHHHHHHcC
Q 000992 975 LFPLGLKLI-TDPAKMEQVLEAWADHLSD-------VKCFE-------DAATTYFCCSS---L------EKAMKAYRASG 1030 (1196)
Q Consensus 975 ly~~AL~L~-~d~~~~~~i~~~~A~~L~~-------~~~~~-------eAa~~y~~ag~---~------~kAl~~y~~~g 1030 (1196)
+|++|++.. .+ ..++..||.++.. .++++ +|..+|++|=. + ......+...|
T Consensus 260 ~y~~al~~~p~~----~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 260 AYEQCLLVLGHH----PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCC----HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 466666655 33 4677788888875 67776 88888887742 1 22335566677
Q ss_pred CHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC
Q 000992 1031 NWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG 1078 (1196)
Q Consensus 1031 ~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~ 1078 (1196)
++++|..+-.+. ..++.....+...++..+...|++.+|..+|.+-+.
T Consensus 336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 877777554431 112211123556667777777788888877776443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.43 Score=50.08 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=28.4
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHcC---CC--cHHHHH----HHHHHHhcChHHHHhhc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSMG---DS--YHADCL----NLMKKYAQLFPLGLKLI 983 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~g---~~--~~~~al----e~~~~~~~ly~~AL~L~ 983 (1196)
.+.++......|+|++|+..|.++- +. ...++. ..+.+. +.|++|++.|
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~ 64 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAI 64 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 3445556666788999988887642 11 111221 223445 6777777766
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.088 Score=53.00 Aligned_cols=108 Identities=11% Similarity=-0.078 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCC----H----HHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSS----L----EKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~----~----~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...+++++|...|.++-. . .....++...++++.+.....+. ...+.. ......+|..+.
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-~~~~~~lg~~~~ 118 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-ADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHH
Confidence 4566778888888888888877776521 1 12224555666666666544321 111111 235566777777
Q ss_pred HcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHH
Q 000992 1062 ALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
..|+|.+|...|.+.+. +. -.-..+|.+.+++++|+..
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 163 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY 163 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 77888887777766331 21 1223455666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.25 Score=52.91 Aligned_cols=132 Identities=11% Similarity=-0.027 Sum_probs=60.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcC---CCc--HHHHH----HHHHHHhcChHHHHhhc-------CCcHHHHHHHHHHHH
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMG---DSY--HADCL----NLMKKYAQLFPLGLKLI-------TDPAKMEQVLEAWAD 998 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g---~~~--~~~al----e~~~~~~~ly~~AL~L~-------~d~~~~~~i~~~~A~ 998 (1196)
+.++.+....|+|++|+..|.++- +.. ..++. ..+... +.|++|++.| .+.......+-..|.
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 444455555666666666666541 111 01111 112334 5555555554 122234445555555
Q ss_pred HHhc--------ccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHH
Q 000992 999 HLSD--------VKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAA 1070 (1196)
Q Consensus 999 ~L~~--------~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa 1070 (1196)
-+.. .+++++|...|.+ +++.+-.......++.....+ ...+.+....+|..+...|+|.+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~------~l~~~p~~~~~~~a~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQL------FIDRYPNHELVDDATQKIREL---RAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHH------HHHHCTTCTTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHH------HHHHCcCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5555 5566666555543 222222222222222211111 1122233355667777777777777
Q ss_pred HHHHHh
Q 000992 1071 KIALDY 1076 (1196)
Q Consensus 1071 ~i~~~y 1076 (1196)
..|.+.
T Consensus 169 ~~~~~~ 174 (261)
T 3qky_A 169 VTYEAV 174 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=94.78 E-value=4.8 Score=45.06 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=13.5
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
..+...+|+|++|+.++.++
T Consensus 100 a~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 45566678888887776543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.46 Score=55.92 Aligned_cols=82 Identities=13% Similarity=-0.052 Sum_probs=48.8
Q ss_pred hHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHH
Q 000992 976 FPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVA 1050 (1196)
Q Consensus 976 y~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~ 1050 (1196)
|++||++. .+-......+...|.-+..+|+|++|..+|++ |++.|.+ .++.+.-++.
T Consensus 310 ~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~------~L~i~~~------------~lg~~Hp~~a 371 (429)
T 3qwp_A 310 CQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR------TMEPYRI------------FFPGSHPVRG 371 (429)
T ss_dssp HHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------HHHHHHH------------HSCSSCHHHH
T ss_pred HHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH------HHHhHHH------------HcCCCChHHH
Confidence 44555554 22234555666666666666666666666543 4444432 1232333445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+..||..+..+|+|++|..+|.+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5677788888888888888877665
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.09 Score=66.27 Aligned_cols=133 Identities=15% Similarity=0.117 Sum_probs=87.5
Q ss_pred HHHcCCCcHHHHHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCC----CHHHH----HHH
Q 000992 954 IVSMGDSYHADCLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCS----SLEKA----MKA 1025 (1196)
Q Consensus 954 l~~~g~~~~~~ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag----~~~kA----l~~ 1025 (1196)
+.+.|. +++|+++ |++||++. |+ ....+..+|.-|...+++++|...|.+|= ++..| -.+
T Consensus 19 ~~~~G~--~~eAi~~-------~~kAl~l~--P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 19 KREQGN--IEEAVRL-------YRKALEVF--PE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHTTC--HHHHHHH-------HHHHHHHC--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCC--HHHHHHH-------HHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334554 6777633 55666665 21 23466778999999999999999998862 22223 256
Q ss_pred HHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHH
Q 000992 1026 YRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEAL 1097 (1196)
Q Consensus 1026 y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~ 1097 (1196)
|...|++++|+...++ +.++++. .+....+|..+...|++++|...|.+-+. +. -.-..+|.+.++|++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 7788888888765443 1112222 35677899999999999999999887432 22 22345677778888776
Q ss_pred HH
Q 000992 1098 RV 1099 (1196)
Q Consensus 1098 rl 1099 (1196)
..
T Consensus 166 ~~ 167 (723)
T 4gyw_A 166 ER 167 (723)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.13 Score=61.96 Aligned_cols=82 Identities=5% Similarity=0.026 Sum_probs=61.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------HHHHHHHH
Q 000992 1019 LEKAMKAYRASGNWSGVLTVAGLL---KLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--------VTNGISLL 1087 (1196)
Q Consensus 1019 ~~kAl~~y~~~g~w~~al~la~~l---~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------~~~Ai~~y 1087 (1196)
|.-.+.+|.++|++++|+.+-.++ +..++. ..+..+...+.+.|+.++|.++|.+.... +...|..|
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL--RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 455677777777777777665543 333332 35677888888999999999999886432 77889999
Q ss_pred HHhcCHHHHHHHHHh
Q 000992 1088 IDARDWEEALRVAFM 1102 (1196)
Q Consensus 1088 ~~~~~w~eA~rla~~ 1102 (1196)
++++++++|+++..+
T Consensus 186 ~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 186 MDTKNADKVYKTLQR 200 (501)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHH
Confidence 999999999988654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.36 Score=45.99 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=25.9
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i 1072 (1196)
+..|...|++++|++.| ++|+.+..........+...+..++..+...|+|.+|.+.
T Consensus 49 g~~~~~~~~~~~A~~~~------~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 105 (127)
T 4gcn_A 49 AAVYFEEKKFAECVQFC------EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105 (127)
T ss_dssp HHHHHHTTCHHHHHHHH------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHH------HHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45555556666666655 3344444433222222223344444444444444444443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=6.9 Score=44.60 Aligned_cols=194 Identities=16% Similarity=0.121 Sum_probs=100.8
Q ss_pred CEEEEEEccCCCEEEEE------------ECCCcEEEEECCC--CeE---EEeee-e---cCcEEEEEECC--CCC-EEE
Q 000992 77 SITAFDYLMEKEALIVG------------TSSGLLLLHSVDG--NAT---EVVGR-V---EGGVRFISPSP--DGD-LLG 132 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~a------------s~dG~I~lw~~~~--~~~---e~vg~-~---~~~I~~~awSP--Dg~-~LA 132 (1196)
..-+|+..|+|..+.+. ..+|.|.++|+++ .+. ++.|. . .-.-..+.+-+ ||+ +|.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778877554443 1799999999873 333 33331 1 12345555545 565 344
Q ss_pred EEe---CCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeecc---ccc--------c
Q 000992 133 VTT---GFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEF---CNS--------S 198 (1196)
Q Consensus 133 ~~s---~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~---d~~--------~ 198 (1196)
++. .+.+|-++..+-+.-....+... ++..+ .....+...+||.+++ .+.. ++. .
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~-~g~~~---------~~pND~~v~~~G~fyv-t~~~~ftd~~~~~~e~~~~ 199 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTI-RHKLL---------PSVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLG 199 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEE-CCTTC---------SSEEEEEEEETTEEEE-EESCSCSSHHHHHHHHHTT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEecc-ccCCC---------CCCceEEEeCCCCEEe-cCCcEeCCcccccchhhcc
Confidence 442 24566666432211111111111 11111 3457899999999888 3431 100 0
Q ss_pred CCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEE--EEEeccCCCCc
Q 000992 199 KLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER--NGLERS--SFDINEQIDST 274 (1196)
Q Consensus 199 ~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~--~f~l~~~~~~~ 274 (1196)
...+.|.-++. |++....++.. .-+.|+|||||+.+..+... ...|..|+. +|.... .|.+ .+.
T Consensus 200 ~~~g~vyr~d~--~~~~~~~~~l~-~pNGia~spDg~~lYvadt~-----~~~I~~~~~~~~g~l~~~~~~~~----~g~ 267 (355)
T 3sre_A 200 LAWSFVTYYSP--NDVRVVAEGFD-FANGINISPDGKYVYIAELL-----AHKIHVYEKHANWTLTPLRVLSF----DTL 267 (355)
T ss_dssp CCCEEEEEECT--TCCEEEEEEES-SEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEC----SSE
T ss_pred CCccEEEEEEC--CeEEEeecCCc-ccCcceECCCCCEEEEEeCC-----CCeEEEEEECCCCcEecCEEEeC----CCC
Confidence 01233444454 44433333322 23889999999988777653 356777764 343221 2322 234
Q ss_pred EEEEEEcc-CCCeeEEEEcc
Q 000992 275 VELLKWNC-MSDLLAAVVRF 293 (1196)
Q Consensus 275 V~~laWSp-Dg~~LAs~~~d 293 (1196)
.-.++..+ +|.+.+++..+
T Consensus 268 PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEEECTTTCCEEEEEESC
T ss_pred CceEEEeCCCCcEEEEecCC
Confidence 56788888 58877655433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.06 E-value=0.14 Score=55.20 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=73.4
Q ss_pred hhCHHHHHHHHHHcCCCcHHHHH----HHHHH----HhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc----ccCHHH
Q 000992 944 LQRFENALKHIVSMGDSYHADCL----NLMKK----YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD----VKCFED 1008 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~~~~~al----e~~~~----~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~----~~~~~e 1008 (1196)
.+++++|+.+|.++-......+. .++.. . +.|++|++.| .+. .....+..+|..+.. .+++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHH
Confidence 77888888888765211011111 12234 5 7788888877 111 134556667777777 888888
Q ss_pred HHHHHHhCC---CHH---HHHHHHHH----cCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH----cCChHHHHHHH
Q 000992 1009 AATTYFCCS---SLE---KAMKAYRA----SGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA----LGKPGEAAKIA 1073 (1196)
Q Consensus 1009 Aa~~y~~ag---~~~---kAl~~y~~----~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~----~~~~~eAa~i~ 1073 (1196)
|...|.++- +.. ..-.+|.. .+++++|+....+. ..+. ......++..+.. .+++.+|...|
T Consensus 133 A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 133 AVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 888887652 111 11244455 56677766544321 1111 2345567777777 78888887777
Q ss_pred HH
Q 000992 1074 LD 1075 (1196)
Q Consensus 1074 ~~ 1075 (1196)
.+
T Consensus 210 ~~ 211 (273)
T 1ouv_A 210 SK 211 (273)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.43 Score=49.71 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHh
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1196)
++..+|.-+...++|++|...|.+
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~ 101 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTE 101 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHH
Confidence 333444444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.77 Score=54.99 Aligned_cols=70 Identities=6% Similarity=-0.178 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 000992 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067 (1196)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~ 1067 (1196)
.....+..+|.-+..+|+|++|..+|++ |++.+.. .++.+-..+.++...++....++++|.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~------Al~i~~~------------~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICK------AYAILLV------------THGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH------------HTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHH------------HhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666555555543 3333222 234344456667777888888889999
Q ss_pred HHHHHHHH
Q 000992 1068 EAAKIALD 1075 (1196)
Q Consensus 1068 eAa~i~~~ 1075 (1196)
+|+.+|.+
T Consensus 453 ~ae~~~~~ 460 (490)
T 3n71_A 453 QNEFMYHK 460 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999877
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=93.75 E-value=1.4 Score=46.16 Aligned_cols=23 Identities=13% Similarity=-0.107 Sum_probs=16.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+..+.+...+|+|++|+..|.+.
T Consensus 45 ~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 45 LDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 44456666788899998887653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=5.9 Score=48.55 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=43.9
Q ss_pred EeeecCCCE----EEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE------C
Q 000992 26 SALDIEQNR----LFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT------S 95 (1196)
Q Consensus 26 ~~~d~~~~~----l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as------~ 95 (1196)
.++.+.++. ||+++.++.++.+|. .+++..|+... +..-....+. ...++ .++ .+++++ .
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa--~TG~~~W~~~~-~~~~~~~~~~-ssP~v-----~~g-~V~vg~~g~e~g~ 180 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNA--ETGETVWKVEN-SDIKVGSTLT-IAPYV-----VKD-KVIIGSSGAELGV 180 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEET--TTCCEEEEEEC-CCGGGTCBCC-SCCEE-----ETT-EEEECCBCGGGTC
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEEC--CCCCEEEeecC-CCCCccceee-cCCEE-----ECC-EEEEEecccccCC
Confidence 455445556 999999999999999 77777677541 1100000010 11111 134 444544 3
Q ss_pred CCcEEEEECCCCeEE
Q 000992 96 SGLLLLHSVDGNATE 110 (1196)
Q Consensus 96 dG~I~lw~~~~~~~e 110 (1196)
+|.|.-+|..+++..
T Consensus 181 ~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQV 195 (599)
T ss_dssp CCEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEE
Confidence 788999999887653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.65 E-value=4 Score=46.40 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=78.1
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccC----CceEEEee
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD----GKYFATLS 192 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD----G~~lAsvs 192 (1196)
..-+.++|.|||.++++--..|.|.+++........+. ... ..+.....+...|+++|| |.++++-+
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~--~~~-------~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELG--EVP-------GVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE--ECT-------TCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeec--ccC-------ceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 45789999999997776655888987753211111111 000 001112245689999995 65555222
Q ss_pred ccccccCCCCEEEEEECCCC----------cEEEE-ecc-CCCceeEEEEcCCCCeEEEEecCCC-------CCCCCeEE
Q 000992 193 EFCNSSKLHKRLKVWERDSG----------TLQAS-SEL-KAFMGAVLEWMPSGANIAAVYDRKS-------ENKCPSIV 253 (1196)
Q Consensus 193 s~d~~~~~d~~irVWd~~~G----------~l~~~-~e~-~~~~v~slawsPdG~~IAs~s~d~~-------~~~~~~V~ 253 (1196)
.. ..++.+| |....+ +.+.. ... ....-..|+|.|||.+..+.++..+ ......|.
T Consensus 103 ~~----~~~~v~R-~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il 177 (347)
T 3das_A 103 SA----SDNRIVR-MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKIL 177 (347)
T ss_dssp CS----SSEEEEE-EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred cC----CCCEEEE-EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence 11 1223333 443221 11111 111 1123367999999998877654221 01124454
Q ss_pred EEeCCCee--------EEEEEeccCCCCcEEEEEEccCCCeeEE
Q 000992 254 FYERNGLE--------RSSFDINEQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 254 ~~e~nGl~--------~~~f~l~~~~~~~V~~laWSpDg~~LAs 289 (1196)
=++.+|.. ...|.. + -.....++|+|+|++.++
T Consensus 178 Ri~~dG~ip~~nPf~~~~i~a~-G--~RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGSPVYSY-G--HRNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp EECTTSSBCTTCSSTTCCEEEB-C--CSBCCEEEECTTCCEEEE
T ss_pred EEeCCCCccCCCCCCCCeEEee-C--CCCcceEEECCCCCEEEE
Confidence 45555531 111111 0 113557889988876554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=93.57 E-value=1.1 Score=49.07 Aligned_cols=17 Identities=6% Similarity=-0.193 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCchhHH
Q 000992 1094 EEALRVAFMHRREDLIT 1110 (1196)
Q Consensus 1094 ~eA~rla~~~~~~dL~e 1110 (1196)
.+|+.++...+.+.+.+
T Consensus 261 ~~Al~i~~~~~~~~~~~ 277 (293)
T 3u3w_A 261 KKASFFFDILEMHAYKE 277 (293)
T ss_dssp HHHHHHHHHTTCTGGGG
T ss_pred HHHHHHHHHhCCHHHHH
Confidence 44777777665555443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=93.50 E-value=7.7 Score=44.07 Aligned_cols=197 Identities=11% Similarity=0.097 Sum_probs=104.3
Q ss_pred ecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC----CCE--EEEEEC----CC
Q 000992 29 DIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME----KEA--LIVGTS----SG 97 (1196)
Q Consensus 29 d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd----~~~--La~as~----dG 97 (1196)
|+.... +++ ...++++.+|+ ..+.. ..+ +.+.+..|..-|+ |+. |+.++. ++
T Consensus 37 dp~~s~-ii~t~k~~gL~Vydl--~G~~l----~~~----------~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n 99 (355)
T 3amr_A 37 TPQNSK-LITTNKKSGLVVYSL--DGKML----HSY----------NTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKN 99 (355)
T ss_dssp CGGGCE-EEEEETTTEEEEEET--TSCEE----EEE----------CCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCC
T ss_pred CCCccE-EEEEcCCCCEEEEcC--CCcEE----EEc----------cCCCcccEEEecccccCCceEeEEEEeCCCCCCC
Confidence 444444 555 44668999998 33332 211 2346777766663 332 555554 46
Q ss_pred cEEEEEC--CCCeEEEeeee----c---CcEEEEEE--CCC-CCE-EEEEeCCceEEEEeccCc--e-eeeeecccccCc
Q 000992 98 LLLLHSV--DGNATEVVGRV----E---GGVRFISP--SPD-GDL-LGVTTGFGQILVMTHDWD--L-LYENPLEELAEG 161 (1196)
Q Consensus 98 ~I~lw~~--~~~~~e~vg~~----~---~~I~~~aw--SPD-g~~-LA~~s~d~tV~l~~~~~d--~-~~~~~l~~~~~~ 161 (1196)
+|.++++ .++++..++.. . ..+..++. +|+ |++ +.+...+|.+..|.-... . +.....+...
T Consensus 100 ~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-- 177 (355)
T 3amr_A 100 TIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-- 177 (355)
T ss_dssp EEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--
T ss_pred eEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--
Confidence 7999955 56677655431 1 45666777 885 554 444456777765432110 0 1111111110
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-----CCcEEEEec--cCCCceeEEEE--cC
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-----SGTLQASSE--LKAFMGAVLEW--MP 232 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-----~G~l~~~~e--~~~~~v~slaw--sP 232 (1196)
....+-.+.-.+...+|- ++- ++.-|..++.+ +++++.... .....+..|+. .+
T Consensus 178 ----------lgsq~EgcvvDd~~g~Ly-v~e------Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 178 ----------MNSQTEGMAADDEYGRLY-IAE------EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp ----------CSSCEEEEEEETTTTEEE-EEE------TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred ----------CCCCcceEEEcCCCCeEE-Eec------ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecC
Confidence 012334556666555554 453 34557777743 245555432 12234577777 67
Q ss_pred CCC--eEEEEecCCCCCCCCeEEEEeCCC--eeEEEEEe
Q 000992 233 SGA--NIAAVYDRKSENKCPSIVFYERNG--LERSSFDI 267 (1196)
Q Consensus 233 dG~--~IAs~s~d~~~~~~~~V~~~e~nG--l~~~~f~l 267 (1196)
+|+ +|||++.+ ....+|++.+ ...+.|.+
T Consensus 241 ~g~gyLivSsQG~------~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 241 DGKGYLMASSQGN------SSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp GGCEEEEEEEGGG------TEEEEEESSTTCCEEEEEEE
T ss_pred CCCEEEEEEcCCC------CEEEEEECCCCCcEEEEEEe
Confidence 766 66776654 4788999863 33444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.48 E-value=2.1 Score=50.53 Aligned_cols=14 Identities=0% Similarity=-0.275 Sum_probs=9.2
Q ss_pred hhCHHHHHHHHHHc
Q 000992 944 LQRFENALKHIVSM 957 (1196)
Q Consensus 944 L~ry~~Al~~l~~~ 957 (1196)
.+++++|+++|.++
T Consensus 200 ~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 200 ERNDAISAQWYRKS 213 (490)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 46677777776654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=93.36 E-value=1.6 Score=48.02 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+...++..+.+.|++.+|..++.+
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666667777677777777666555
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=93.30 E-value=0.4 Score=47.72 Aligned_cols=106 Identities=10% Similarity=0.026 Sum_probs=56.0
Q ss_pred HHHHHHHHhcChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH----HHH----HHHHHHcCCHHHHH
Q 000992 965 CLNLMKKYAQLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL----EKA----MKAYRASGNWSGVL 1036 (1196)
Q Consensus 965 ale~~~~~~~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~----~kA----l~~y~~~g~w~~al 1036 (1196)
..+++... ..|++|+++- |+ ....+...|..+...++|++|...|.++-.. ..+ -.+|...|+|++|+
T Consensus 15 l~~~~~~~-~~l~~al~l~--p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai 90 (151)
T 3gyz_A 15 VIDAINSG-ATLKDINAIP--DD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAA 90 (151)
T ss_dssp HHHHHHTS-CCTGGGCCSC--HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCC-CCHHHHhCCC--HH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHH
Confidence 34445555 6666666543 32 2234456667777777777777777665211 111 24555666666665
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1037 TVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1037 ~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+. .++|+. ......+|..+...|++.+|...|.+
T Consensus 91 ~~~~~al~l~P~~-~~~~~~lg~~~~~lg~~~eA~~~~~~ 129 (151)
T 3gyz_A 91 DLYAVAFALGKND-YTPVFHTGQCQLRLKAPLKAKECFEL 129 (151)
T ss_dssp HHHHHHHHHSSSC-CHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433221 111111 13455666667667777776666544
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=93.16 E-value=30 Score=45.68 Aligned_cols=232 Identities=12% Similarity=0.091 Sum_probs=114.5
Q ss_pred CCCEEEEEeC--CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccC----CCEEEEEE---CCCcEEE
Q 000992 31 EQNRLFFASS--ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLME----KEALIVGT---SSGLLLL 101 (1196)
Q Consensus 31 ~~~~l~~~s~--~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd----~~~La~as---~dG~I~l 101 (1196)
+++.||++|. |+.++.|+. ...+....+.- +.. +..-+.|.++..-.. ...|++++ .+|.+++
T Consensus 336 ~~g~lFvgS~~Gds~l~~~~~--~~~~~~~~~~~----~~~--~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~ 407 (1158)
T 3ei3_A 336 DNGVVFVGSRLGDSQLVKLNV--DSNEQGSYVVA----MET--FTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 407 (1158)
T ss_dssp STTEEEEECSSSCEEEEEECS--SCCTTSCCEEE----EEE--ECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEE
T ss_pred CCCEEEEEEecCCcEEEEEec--CCCCccceEEe----Eee--ecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEE
Confidence 4668999977 556776664 11110000000 111 112367888877432 23554443 4577877
Q ss_pred EECCCCe-----EEEeeeecCcEEEEEEC---CCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCC
Q 000992 102 HSVDGNA-----TEVVGRVEGGVRFISPS---PDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSF 173 (1196)
Q Consensus 102 w~~~~~~-----~e~vg~~~~~I~~~awS---PDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~ 173 (1196)
+...=+. .+.-| + .+||++.-+ +...+|++...+.|.++ .-..+.+.+...... .+ .
T Consensus 408 lr~Gi~~~~~~~~~l~g-v-~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl-~i~~e~veev~~~gf-----~~------~- 472 (1158)
T 3ei3_A 408 IRNGIGIHEHASIDLPG-I-KGLWPLRSDPNRETDDTLVLSFVGQTRVL-MLNGEEVEETELMGF-----VD------D- 472 (1158)
T ss_dssp EEESBCEEEEEEECCCS-C-CEEEEECCCSSCSSCCEEEEEETTEEEEE-EEETTEEEEECCTTC-----CS------S-
T ss_pred EecCCCEEEEEeecCCC-c-cEEEEEeecCCCCCCCEEEEECCCCeEEE-EEeCCcccccccccc-----cC------C-
Confidence 6543211 11112 1 467777654 33578888888888654 222344444321111 10 0
Q ss_pred CCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-ceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 174 SFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-MGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 174 ~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
..-..++=-++|.++= |.. +.||+.+.+.+.......+..+ .+...+-+. .+|+.++. ..+
T Consensus 473 ~~TL~~~~l~~~~ivQ-Vt~--------~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~g-------~~l 534 (1158)
T 3ei3_A 473 QQTFFCGNVAHQQLIQ-ITS--------ASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAVG-------RAL 534 (1158)
T ss_dssp SCEEEEEEETTTEEEE-EES--------SCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEET-------TEE
T ss_pred CCcEEEEEcCCCeEEE-Eec--------CEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEEC-------CEE
Confidence 0001111124454333 432 4577777644444444443222 234444332 34444432 246
Q ss_pred EEEeCC-CeeEEEEEeccCCCCcEEEEEEccC------CCeeEEEEc-cCCcceEEEEEecCCE
Q 000992 253 VFYERN-GLERSSFDINEQIDSTVELLKWNCM------SDLLAAVVR-FEEYDSVKICFFSNNH 308 (1196)
Q Consensus 253 ~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD------g~~LAs~~~-d~~~~~V~lW~~~n~~ 308 (1196)
..|+.+ |... +. -+...+..|.+++++|. ++++|+|.. |. +|+|..+.+..
T Consensus 535 ~~fel~~~~L~-~~-~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~---tv~I~sL~~l~ 593 (1158)
T 3ei3_A 535 YYLQIHPQELR-QI-SHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDI---SARILKLPSFE 593 (1158)
T ss_dssp EEEEEETTEEE-EE-EEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTT---EEEEEETTTCC
T ss_pred EEEEeeCCcee-ee-cccCCCCceEEEEeecCCCCcccccEEEEEECCCC---EEEEEECCCCC
Confidence 667643 3211 11 11112346999999864 479999997 87 89999987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.57 Score=50.29 Aligned_cols=157 Identities=12% Similarity=0.033 Sum_probs=87.3
Q ss_pred cHHHHhhCHHHHHHHHHHcCCCcHHHHH----HHHHH----HhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc----c
Q 000992 939 TIDLRLQRFENALKHIVSMGDSYHADCL----NLMKK----YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD----V 1003 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~~~~~al----e~~~~----~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~----~ 1003 (1196)
.+....|+|++|+.+|.++-......+. .++.. . +.|++|++.| .+. .....+..+|..+.. .
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDL-NYSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhCCCCcc
Confidence 3444556777777777654211111111 12233 5 6777777777 111 134566677788877 8
Q ss_pred cCHHHHHHHHHhCC---CHH---HHHHHHHH----cCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH----cCChHH
Q 000992 1004 KCFEDAATTYFCCS---SLE---KAMKAYRA----SGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA----LGKPGE 1068 (1196)
Q Consensus 1004 ~~~~eAa~~y~~ag---~~~---kAl~~y~~----~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~----~~~~~e 1068 (1196)
+++++|...|.++- +.+ ..-.+|.. .+++++|+....+. ..+. ......++..+.. .+++.+
T Consensus 92 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 92 QNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---GDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHcCCCCCCCHHH
Confidence 88888888887762 211 11245556 67777777544331 1111 2345567777776 788888
Q ss_pred HHHHHHHhc--CCHHH---HHHHHHH----hcCHHHHHHHH
Q 000992 1069 AAKIALDYC--GDVTN---GISLLID----ARDWEEALRVA 1100 (1196)
Q Consensus 1069 Aa~i~~~yl--~d~~~---Ai~~y~~----~~~w~eA~rla 1100 (1196)
|...|.+-+ ++++. ...+|.+ .+++++|+...
T Consensus 169 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 169 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 888776632 33322 2234555 66777776543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=92.89 E-value=11 Score=40.92 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=27.9
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEA 1069 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eA 1069 (1196)
+.+|...|++++|++.|. +|+.++...+ +...+..++..+|..+...|++.+|
T Consensus 203 g~~y~~~~~y~~Al~~~~------kal~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVN------KAIEISCRIN-SMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHTTCHHHHHHHHH------HHHHHHHHTT-BCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHhhHHHHHHHHH------HHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 445555566666666553 3333433322 1112234566677777777777776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=0.37 Score=47.32 Aligned_cols=53 Identities=19% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|...|++++|+.+|. +++.+- ++. .+....+|..+...|++.+|++.|++
T Consensus 72 g~~~~~~~~~~~A~~~~~------~al~~~------p~~-~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYR------RSVELN------PTQ-KDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHTTCHHHHHHHHH------HHHHHC------TTC-HHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHH------HHHHhC------CCC-HHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455666677777777663 334322 111 24667788888888998888877643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=1.1 Score=52.91 Aligned_cols=70 Identities=14% Similarity=-0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChH
Q 000992 988 KMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPG 1067 (1196)
Q Consensus 988 ~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~ 1067 (1196)
.....+...|.-+..+|+|++|..+|++ |++.+.+ .++.+.-++...+..||..+..+|+|+
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~------aL~i~~~------------~lG~~Hp~~a~~l~nLa~~~~~qg~~~ 399 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQK------IIKPYSK------------HYPVYSLNVASMWLKLGRLYMGLENKA 399 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHH------------HSCSSCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH------HHHHHHH------------HcCCCChHHHHHHHHHHHHHHhccCHH
Confidence 4555666666666677777776666654 3444432 233333455566778888888899998
Q ss_pred HHHHHHHH
Q 000992 1068 EAAKIALD 1075 (1196)
Q Consensus 1068 eAa~i~~~ 1075 (1196)
+|..+|.+
T Consensus 400 eA~~~~~~ 407 (433)
T 3qww_A 400 AGEKALKK 407 (433)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888666
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.28 Score=61.55 Aligned_cols=162 Identities=13% Similarity=-0.012 Sum_probs=92.0
Q ss_pred CCEEEEEEccCCCEEEEE-ECCCcEEEEECCC----CeEE-EeeeecCcEEEEEECCCCCEEEEE-eCCceEEEEeccCc
Q 000992 76 DSITAFDYLMEKEALIVG-TSSGLLLLHSVDG----NATE-VVGRVEGGVRFISPSPDGDLLGVT-TGFGQILVMTHDWD 148 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a-s~dG~I~lw~~~~----~~~e-~vg~~~~~I~~~awSPDg~~LA~~-s~d~tV~l~~~~~d 148 (1196)
..+.+|+|.+++..|..+ ...+.|..+++++ .... ++..--.....+++.+.+..|..+ ...+.|.+++.+..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 467889999987777655 3557899999876 2222 221101124567788655544443 45677777654433
Q ss_pred eeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeE
Q 000992 149 LLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAV 227 (1196)
Q Consensus 149 ~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~s 227 (1196)
....+ +... -..-..|++.|++.+|. ++... ...+|.+.+. +|....+.- ..-.....
T Consensus 486 ~~~~l-~~~~--------------~~~P~giavDp~~g~ly-~td~~----~~~~I~~~~~-dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 486 KRKTL-FREQ--------------GSKPRAIVVDPVHGFMY-WTDWG----TPAKIKKGGL-NGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp CEEEE-CCCS--------------SCCCCCEECCSSSSCCE-ECCCS----SSCCEEBCCS-SSCCCCEESCSSCSSCCC
T ss_pred ceEEE-EeCC--------------CCCcceEEEccCCCcEE-EcccC----CCCeEEEEeC-CCCCeeEEEeCCCCCccE
Confidence 22111 1100 01225688998665444 33211 2267888887 665443331 11233478
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEE
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERS 263 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~ 263 (1196)
|+|+|++..|-.+... ...|..++.+|....
T Consensus 545 lavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~ 575 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRK 575 (699)
T ss_dssp EEECTTTCCEEEEETT-----TTEEEEECSSSSCCE
T ss_pred EEEeccCCEEEEEecC-----CCeEEEEccCCCceE
Confidence 9999998877666543 357888888875443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=92.79 E-value=1.2 Score=54.97 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHh--hcCCC-----HHHHHHHHHHHHH
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAG--LLKLG-----KDEVAKLAQELCE 1058 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~--~l~~~-----~~~~~~l~~~la~ 1058 (1196)
++..+.|...-|+.++++|++++|..+|..||+|++|++...++- .+++.... +-.++ .+++..++..+.+
T Consensus 439 ~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~L--s~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~ 516 (661)
T 2qx5_A 439 KEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLL--SDTLSASDLDQPLVGPDDNSETNPVLLARRMAS 516 (661)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHH--HHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHH--HHHhcccccccccccccccccccHHHHHHHHHH
Confidence 345778889999999999999999999999999999999886654 33443211 10000 1346678888888
Q ss_pred HHHHcCC--------hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHhc
Q 000992 1059 ELQALGK--------PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFMH 1103 (1196)
Q Consensus 1059 ~L~~~~~--------~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~~ 1103 (1196)
.+..... -.++-.++++ +-++.+. ...++|++|+....+-
T Consensus 517 ~y~~~~~~~~~~~~~~~~t~~lLl~----l~~f~~~-~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 517 IYFDNAGISRQIHVKNKEICMLLLN----ISSIREL-YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHTTSCHHHHHHHHHHHH----HHHHHHH-HHTTCHHHHHHHHHHT
T ss_pred HHhcCchhhhhccHHHHHHHHHHHH----HHHHHHH-HHcCCHHHHHHHHHhC
Confidence 8765421 2244444444 3333333 5578899999888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.23 Score=62.08 Aligned_cols=101 Identities=9% Similarity=-0.109 Sum_probs=58.3
Q ss_pred cChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHh
Q 000992 974 QLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 974 ~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~ 1040 (1196)
+.|++|++.| .+|.. ..++..+|.-+...++|++|...|.++=. +-..-.+|...|+|++ +....
T Consensus 447 g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 447 GDVAKATRKLDDLAERVGWR-WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp TCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred CCHHHHHHHHHHHhccCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 5666776665 13322 34556677777777888888777776521 1122245566666554 32221
Q ss_pred h-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1041 L-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1041 ~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
+ +..+++. ......+|..+...|++++|...|.+.+
T Consensus 525 ~al~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 525 TVWSTNDGV-ISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhCCch-HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 1 1112222 2356677888888888888888877743
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=92.44 E-value=0.16 Score=61.68 Aligned_cols=85 Identities=11% Similarity=-0.056 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCC-----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCS-----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag-----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...++|++|...|.++- + +-....+|...|++++|+....+. ..+++. ......++..+.
T Consensus 58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~ 136 (568)
T 2vsy_A 58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 345556666666666666666666541 1 112224555666666665443321 111211 245667888888
Q ss_pred Hc---CChHHHHHHHHHh
Q 000992 1062 AL---GKPGEAAKIALDY 1076 (1196)
Q Consensus 1062 ~~---~~~~eAa~i~~~y 1076 (1196)
.. |++.+|...|.+.
T Consensus 137 ~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HTTCCTTHHHHHHHHHHH
T ss_pred HhhccccHHHHHHHHHHH
Confidence 88 8888888887763
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=92.39 E-value=6.3 Score=46.49 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=56.6
Q ss_pred cEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccc--cCCCCeEEEEEcc----CCceEEE
Q 000992 118 GVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELS--SSFSFKSPISWRG----DGKYFAT 190 (1196)
Q Consensus 118 ~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~--~~~~~v~~isWsp----DG~~lAs 190 (1196)
.-++++|.|||+++++-...+.|.+++.. ... ..+ .... ..+. ....+...|+|+| +|.+++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~--~~~~-------~~~~~~~g~~Gllgia~~Pdf~~~g~lYv- 96 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTV--FQVP-------EIVNDADGQNGLLGFAFHPDFKNNPYIYI- 96 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE--EECT-------TCCCCTTSSCSEEEEEECTTTTTSCEEEE-
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEE--ecCC-------ccccccCCCCceeEEEECCCcCcCCEEEE-
Confidence 46799999999977765444467766421 211 111 0000 0000 1235678999999 565555
Q ss_pred eeccc-cccCC-----CCEEEEEECC--CCcE-----EEE-ecc-CCCceeEEEEcCCCCeEEEEec
Q 000992 191 LSEFC-NSSKL-----HKRLKVWERD--SGTL-----QAS-SEL-KAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 191 vss~d-~~~~~-----d~~irVWd~~--~G~l-----~~~-~e~-~~~~v~slawsPdG~~IAs~s~ 242 (1196)
+.+.. +...+ ...|.-|+.. ++.+ +.. ... .......|+|.|||++..+.++
T Consensus 97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 22210 00000 1233333331 2222 111 111 1233589999999998777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.31 E-value=1.6 Score=49.98 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+...+|..+.+.|+|.+|..++.+
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHH
Confidence 3445556666666666666555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=92.28 E-value=1.1 Score=45.01 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHH----HHHHHHHHHcCChHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLA----QELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~----~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|..-+..+...|++++|+++|.++-.. +..+.. ++++.. ... ...+..|...|+|++|...|.+
T Consensus 60 ~~n~g~al~~Lgr~~eAl~~~~kAL~l---~n~~~e--~~pd~~-~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 60 HAGLAEALAGLRSFDEALHSADKALHY---FNRRGE--LNQDEG-KLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHHCC--TTSTHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---hhcccc--CCCchH-HHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 445566677777777777776443210 111222 233332 234 6778888888888888777554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=92.18 E-value=2 Score=48.24 Aligned_cols=80 Identities=10% Similarity=-0.053 Sum_probs=40.1
Q ss_pred hcccHHHHhhCHHHHHHHHHHc----CCC-cHHH--HH----HHHHHHhcChHHHHhhc----------CCcHHHHHHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSM----GDS-YHAD--CL----NLMKKYAQLFPLGLKLI----------TDPAKMEQVLE 994 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~----g~~-~~~~--al----e~~~~~~~ly~~AL~L~----------~d~~~~~~i~~ 994 (1196)
.+..+....|++++|+.++.++ ... .... +. ..+... +.|++|++++ .++......+.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3455666788888888887653 111 1111 11 122344 5566665554 12222223344
Q ss_pred HHHHHHhcccCHHHHHHHHHhC
Q 000992 995 AWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..|..+..+|+|++|...|.++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555666666665555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=92.18 E-value=0.2 Score=46.29 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=6.2
Q ss_pred HhhCHHHHHHHHH
Q 000992 943 RLQRFENALKHIV 955 (1196)
Q Consensus 943 ~L~ry~~Al~~l~ 955 (1196)
..|++++|+.++.
T Consensus 13 ~~~~~~~A~~~~~ 25 (136)
T 2fo7_A 13 KQGDYDEAIEYYQ 25 (136)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCcHHHHHHHHH
Confidence 3445555554444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.27 Score=45.24 Aligned_cols=24 Identities=17% Similarity=0.004 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..+...|++.+|...+.+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~ 94 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQK 94 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344555556666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=91.97 E-value=2.1 Score=47.97 Aligned_cols=108 Identities=12% Similarity=-0.022 Sum_probs=65.9
Q ss_pred HHHHHHHhcccCHHHHHHHHHhC-------CCH---HHHHHHHHHcCCHHHHHHHHhhcC-CCHH---HHHHHHHHHHH-
Q 000992 994 EAWADHLSDVKCFEDAATTYFCC-------SSL---EKAMKAYRASGNWSGVLTVAGLLK-LGKD---EVAKLAQELCE- 1058 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~a-------g~~---~kAl~~y~~~g~w~~al~la~~l~-~~~~---~~~~l~~~la~- 1058 (1196)
...|.-+...+++++|...+.+. +.. -.++++|.+.|+.+.|..+.+++. .+++ .-..+...+++
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHH
Confidence 35666666677777777777766 222 244567777777777777664431 1220 00123334443
Q ss_pred ---HHHHcCChHHHHHHHHHhcCCH------HHHHHHHHHhcCHHHHHHHHH
Q 000992 1059 ---ELQALGKPGEAAKIALDYCGDV------TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1059 ---~L~~~~~~~eAa~i~~~yl~d~------~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.+...+++.+|..+|.+.+..+ ..-..++...++|++|-++..
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333458999999998865443 344557889999999977653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.81 Score=53.23 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=14.6
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+.|...+|+|++|+++|.++
T Consensus 58 g~~~~~~G~~~eAl~~~~kA 77 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKA 77 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 45556678888888887764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=91.84 E-value=3.2 Score=42.90 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcChHHHHhhc-----CCc-HHHHHHHHHHHHHHhcccCHHHHHHHHHhCC----CH----HHHHHHHHH
Q 000992 963 ADCLNLMKKYAQLFPLGLKLI-----TDP-AKMEQVLEAWADHLSDVKCFEDAATTYFCCS----SL----EKAMKAYRA 1028 (1196)
Q Consensus 963 ~~ale~~~~~~~ly~~AL~L~-----~d~-~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag----~~----~kAl~~y~~ 1028 (1196)
..+..++ .. +.|++|++.| .+| ... .++...|.-+...++|++|...|.++- +. ..-..+|..
T Consensus 12 ~~g~~~~-~~-~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 12 NEGNDAL-NA-KNYAVAFEKYSEYLKLTNNQDS-VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHH-HT-TCHHHHHHHHHHHHHHTTTCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-Hc-cCHHHHHHHHHHHHhccCCCCc-HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 3444444 45 7788888877 243 222 344447777777777777777777652 11 222356666
Q ss_pred cCCHHHHHHHHhhc-CCCHHH------HHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1029 SGNWSGVLTVAGLL-KLGKDE------VAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1029 ~g~w~~al~la~~l-~~~~~~------~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
.|++++|+....+. ...++. +......++..+...|+|.+|...|.+-+
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 67777777544331 101110 11334555555666666666666665533
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.83 E-value=0.11 Score=53.29 Aligned_cols=48 Identities=15% Similarity=-0.161 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
+...+|..+...|+|.+|...|.+-+. +. -....+|...++|++|+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 444555556666666666655554221 11 1223445556666666543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.76 E-value=2.5 Score=49.84 Aligned_cols=70 Identities=6% Similarity=-0.138 Sum_probs=39.7
Q ss_pred hhCHHHHHHHHHHcCCC-cH----HHHHHHHHH----HhcChHHHHhhc---CCcHHHHHHHHHHHHHHhc----ccCHH
Q 000992 944 LQRFENALKHIVSMGDS-YH----ADCLNLMKK----YAQLFPLGLKLI---TDPAKMEQVLEAWADHLSD----VKCFE 1007 (1196)
Q Consensus 944 L~ry~~Al~~l~~~g~~-~~----~~ale~~~~----~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~----~~~~~ 1007 (1196)
.+++++|+++|.++-+. .. ..+.-| .. . +.+++|+++| .+. .....+..+|..+.. .++++
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y-~~g~g~~-~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAY-FEGDGVT-RDYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTSSSC-CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HcCCCCC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 45788888887765211 11 112111 22 3 5677888777 111 123455566666666 77888
Q ss_pred HHHHHHHhC
Q 000992 1008 DAATTYFCC 1016 (1196)
Q Consensus 1008 eAa~~y~~a 1016 (1196)
+|...|.++
T Consensus 205 ~A~~~~~~a 213 (490)
T 2xm6_A 205 ISAQWYRKS 213 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.75 E-value=3.4 Score=47.25 Aligned_cols=84 Identities=7% Similarity=-0.033 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCH--------------HHHHHHHHHcCCHHHHHHHHh-------hcCCCHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSL--------------EKAMKAYRASGNWSGVLTVAG-------LLKLGKDEV 1049 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~--------------~kAl~~y~~~g~w~~al~la~-------~l~~~~~~~ 1049 (1196)
.+....+......+++++|..+|..+-.. .+-...|...|+|.+|+.+.. ... ++...
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-~~~~~ 174 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-DKPSL 174 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS-CSTHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc-cchhH
Confidence 34444455555555555555555443221 122344455555555554333 222 33344
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+....++..+...|+|..|..+|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 45555666666666666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.43 E-value=1 Score=49.82 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHhCC--C------HHHHHHHHHHcCCHHHHHHHHhhcC-C-CHHHHHHHHHHHHH
Q 000992 989 MEQVLEAWADHLSDVKCFEDAATTYFCCS--S------LEKAMKAYRASGNWSGVLTVAGLLK-L-GKDEVAKLAQELCE 1058 (1196)
Q Consensus 989 ~~~i~~~~A~~L~~~~~~~eAa~~y~~ag--~------~~kAl~~y~~~g~w~~al~la~~l~-~-~~~~~~~l~~~la~ 1058 (1196)
...+...||..|...++|++|..+|..+- . |..|+ .|.+.++|.+|+....... . ++..-......++.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence 46778888888888888888888887762 2 23333 5667788888887665432 1 12111346677888
Q ss_pred HHHHcCChHHHHHHHHH
Q 000992 1059 ELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1059 ~L~~~~~~~eAa~i~~~ 1075 (1196)
.|...|++.+|...|.+
T Consensus 180 al~~LG~~~eAl~~l~~ 196 (282)
T 4f3v_A 180 AAANLALFTEAERRLTE 196 (282)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 88888888888888777
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.27 E-value=12 Score=48.02 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=119.5
Q ss_pred hhhHHHHHHhcCChh-hhc------ccHHHHhhCHHHHHHHHHHcCCC--------cH----HHHHHHHHHHhcC--hHH
Q 000992 920 EFLPYLQELESMPPL-LMR------YTIDLRLQRFENALKHIVSMGDS--------YH----ADCLNLMKKYAQL--FPL 978 (1196)
Q Consensus 920 eYlpfL~~L~~l~~~-~~r------~~Id~~L~ry~~Al~~l~~~g~~--------~~----~~ale~~~~~~~l--y~~ 978 (1196)
+.||-|..|..=+.. .|+ -+|.-|||.|++|+++-..+|+- +. .+||+.+.+. +- ++.
T Consensus 52 ~~i~~ie~l~ed~~f~~r~laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~-~~~~~~~ 130 (963)
T 4ady_A 52 NELPDIEALYDDDTFSDREMAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQE-ASKQYTK 130 (963)
T ss_dssp TTHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred hhHHHHHHHHcCCCcchHHHHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHH-Hhhcccc
Confidence 457888888765321 222 27888999999999998887731 11 4555555443 21 111
Q ss_pred HHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHH------cCCHHHHH----HHHhhcCCC
Q 000992 979 GLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRA------SGNWSGVL----TVAGLLKLG 1045 (1196)
Q Consensus 979 AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~------~g~w~~al----~la~~l~~~ 1045 (1196)
--.-+ .-++++..+.+..=++....+.+.+|.-+-..+...++-.+...+ ..++.+.. .++..+. +
T Consensus 131 ~~~~~~~~~id~rL~~Lv~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv-~ 209 (963)
T 4ady_A 131 DEQFYTKDIIDPKLTSIFERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTV-T 209 (963)
T ss_dssp CTTGGGSSCSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTC-C
T ss_pred ccccccccccCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccC-C
Confidence 00000 124578888888888999999999999999999999866555544 13444333 4454444 4
Q ss_pred HHHH-HHHHHHHHHHHHHcC--ChHHHHHHHHHhcCCHHHHHHHHHH---hcCHHHHHHHHH
Q 000992 1046 KDEV-AKLAQELCEELQALG--KPGEAAKIALDYCGDVTNGISLLID---ARDWEEALRVAF 1101 (1196)
Q Consensus 1046 ~~~~-~~l~~~la~~L~~~~--~~~eAa~i~~~yl~d~~~Ai~~y~~---~~~w~eA~rla~ 1101 (1196)
+++. .++++.+.+.+.+.. +|-+|.+++++ ++|.+.+.+++.+ ...---|..+|.
T Consensus 210 p~~fr~~vLr~l~~Iy~k~~~~dy~~a~~~ai~-LnD~~li~~if~~l~~~~d~l~ayQiAF 270 (963)
T 4ady_A 210 NSKFRSSILRKSFDFLMNMPNCDYLTLNKVVVN-LNDAGLALQLFKKLKEENDEGLSAQIAF 270 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH-HTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH-cCCHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 4553 567787888888777 89999999999 9999999999998 444444444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=91.27 E-value=1.8 Score=44.14 Aligned_cols=24 Identities=4% Similarity=-0.201 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...|.+
T Consensus 123 ~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 123 VLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 334445555555555555544444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.49 Score=49.07 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=13.5
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
++++......|+|++|+..|.++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~a 30 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQT 30 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 44445555566677777666554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.45 Score=45.34 Aligned_cols=22 Identities=14% Similarity=-0.068 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
...+|..+...|+|.+|.+.|.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444444455554444433
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=90.94 E-value=5.9 Score=48.86 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=93.4
Q ss_pred ccHHHHhhCHHHHHHHHHHcCCCcHHHHHHHH---HHHhcChHHHHhhc-CCcH----HHHHHHHHHHHHHhcccCHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSMGDSYHADCLNLM---KKYAQLFPLGLKLI-TDPA----KMEQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~---~~~~~ly~~AL~L~-~d~~----~~~~i~~~~A~~L~~~~~~~eA 1009 (1196)
|.+-..-|.||.|+++|.+.. .-.|+-+. ..+ +|....-+|+ .++. .+-.+...|..-+ ...+..+|
T Consensus 301 f~vLlLtgqFE~AI~~L~~~~---~vdAVH~AIaL~~~-gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F-~~td~~~A 375 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTFS---EMDAVHLAIGLASL-KLFKIDSSTRLTKKPKRDIRFANILANYTKSF-RYSDPRVA 375 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC---HHHHHHHHHHHHHT-TC-----------------CHHHHHHHHHTTT-TTTCHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhcC---chhHHHHHHHHHHc-CCccCCCcccccCCCcccccHHHHHHHHHHHh-hcCCHHHH
Confidence 567777899999999999873 34554444 224 5554423344 2221 2445555666555 45588899
Q ss_pred HHHHHhCCCHH---------HHH-HHHHHcCCHHHHHH-----------HHhh----cCC-C-HHHHHHHHHHHHHHHHH
Q 000992 1010 ATTYFCCSSLE---------KAM-KAYRASGNWSGVLT-----------VAGL----LKL-G-KDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 1010 a~~y~~ag~~~---------kAl-~~y~~~g~w~~al~-----------la~~----l~~-~-~~~~~~l~~~la~~L~~ 1062 (1196)
..+|...+... +++ +.-.+.+.|...+- +..+ +++ + ++-++.++...|..+.+
T Consensus 376 l~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~ 455 (661)
T 2qx5_A 376 VEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADE 455 (661)
T ss_dssp HHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 88887664331 112 23334566666652 1111 111 2 33456788999999999
Q ss_pred cCChHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHH
Q 000992 1063 LGKPGEAAKIALDYCGDVTNGISLLIDARDWEEAL 1097 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~ 1097 (1196)
.|++.+|..+|.- +|+++.|+++.++. -.+|+
T Consensus 456 ~G~~~dAi~LY~L-a~~~d~vl~lln~~--Ls~~l 487 (661)
T 2qx5_A 456 DGRIYDSILLYQL-AEEYDIVITLVNSL--LSDTL 487 (661)
T ss_dssp TTCHHHHHHHHHH-TTCHHHHHHHHHHH--HHHHH
T ss_pred CCCHHHHHHHHHH-hcCHHHHHHHHHHH--HHHHh
Confidence 9999999999888 99999999999876 45554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.75 Score=45.34 Aligned_cols=19 Identities=11% Similarity=-0.069 Sum_probs=8.0
Q ss_pred HHHHHHHHHcCChHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i 1072 (1196)
..+|..+...|+|.+|...
T Consensus 83 ~~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHH
Confidence 3444444444444444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=90.63 E-value=0.76 Score=45.01 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=20.9
Q ss_pred cChHHHHhhcCCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 974 QLFPLGLKLITDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 974 ~ly~~AL~L~~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..|++|+++- |.. ...+...|..+...++|++|...|.++
T Consensus 8 ~~~~~al~~~--p~~-~~~~~~~g~~~~~~g~~~~A~~~~~~a 47 (148)
T 2vgx_A 8 GTIAMLNEIS--SDT-LEQLYSLAFNQYQSGXYEDAHXVFQAL 47 (148)
T ss_dssp CSHHHHTTCC--HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHcCC--Hhh-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455555532 222 233445566666666666666666543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=90.33 E-value=0.54 Score=53.09 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=25.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-+.+|.+.|++++|+++|.+ |+.+- +.. ...+..+|..+...|+|.+|...|.+
T Consensus 202 la~~~~~~g~~~~A~~~~~~------al~~~------p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~ 255 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNK------ALELD------SNN-EKGLSRRGEAHLAVNDFELARADFQK 255 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------HHHHC------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH------HHHhC------CCc-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555666666665533 23221 111 12444555555555555555555433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.04 E-value=1.8 Score=50.29 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=12.0
Q ss_pred ccHHHHhhCHHHHHHHHHHc
Q 000992 938 YTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~ 957 (1196)
+.+...+|++++|+..|.++
T Consensus 254 g~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHH
Confidence 44555566666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=89.88 E-value=5.5 Score=42.17 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcChHHHHhhc-----CCc--HHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 962 HADCLNLMKKYAQLFPLGLKLI-----TDP--AKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 962 ~~~ale~~~~~~~ly~~AL~L~-----~d~--~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+..+..++. . +.|++|+++| .+| .....++-..|.-+...++|++|...|.++
T Consensus 19 ~~~a~~~~~-~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 19 FERAMEFYN-Q-GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp HHHHHHHHH-T-TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-h-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 455555554 3 6788888776 222 233455556666666666666666666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=0.52 Score=51.76 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCCHH--------HHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSSLE--------KAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~--------kAl~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...+++++|...|.++-... .+.-.+...+...+|+...++ +..+++. .+....+|..+.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~-~~~~~~la~~l~ 230 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED-AALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc-HHHHHHHHHHHH
Confidence 345566677777777777777777663211 001111122222222211100 0001212 235566777777
Q ss_pred HcCChHHHHHHHHH
Q 000992 1062 ALGKPGEAAKIALD 1075 (1196)
Q Consensus 1062 ~~~~~~eAa~i~~~ 1075 (1196)
..|++++|...|.+
T Consensus 231 ~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 231 QVGRNEEALELLFG 244 (287)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcccHHHHHHHHHH
Confidence 77777777777665
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=89.79 E-value=38 Score=42.20 Aligned_cols=232 Identities=7% Similarity=-0.021 Sum_probs=111.9
Q ss_pred EEEEE-EccCCCEEEEEEC-CC----cEEEEECCCCeEEEeeeecCcE----------EEEEECCCCCEEEEEeCC----
Q 000992 78 ITAFD-YLMEKEALIVGTS-SG----LLLLHSVDGNATEVVGRVEGGV----------RFISPSPDGDLLGVTTGF---- 137 (1196)
Q Consensus 78 v~~v~-~spd~~~La~as~-dG----~I~lw~~~~~~~e~vg~~~~~I----------~~~awSPDg~~LA~~s~d---- 137 (1196)
..++. ++||++.++++.+ +| +|+++|+.+++.-. +.+...+ ..++|- |++.+.+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~-~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK-NGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT-TCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC-CCcccccccccccccccceeeEE-CCCEEEEEeCCCCCC
Confidence 34566 8999988876533 33 58889999876521 1111111 234886 55565554321
Q ss_pred -------ceEEEEeccCceeeeeecccccCccccccCccccCCC-CeEEEEEccCCce-----EEEeeccccccCCCCEE
Q 000992 138 -------GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS-FKSPISWRGDGKY-----FATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 138 -------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~-~v~~isWspDG~~-----lAsvss~d~~~~~d~~i 204 (1196)
.+|..|.+ +.+..+- ..| |.+.+. .-....-++|+++ ++ ..+.+ .....+
T Consensus 209 ~~~~~~~~~v~~~~~-Gt~~~~~--------~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~---~~~~~~ 271 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKR-GESIEKA--------KKL----FEVPKEYIYVSAGKLLSDTISSSLIFI-SANKD---FYNYDN 271 (711)
T ss_dssp BCTTSSBCEEEEEET-TSCGGGC--------EEE----EECCTTSCEEEEEESSCTTTCSSEEEE-EEESS---SSCEEE
T ss_pred cCcCCCCCEEEEEEC-CCChHHC--------eEE----eccCCCceEEEEEEecCCCceEEEEEE-EEecc---cCceeE
Confidence 23444432 2221111 111 222122 2244555677774 33 12211 123456
Q ss_pred EEEECCC--CcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC----CCCCCeEEEEeCCCe-------eEEEEEeccCC
Q 000992 205 KVWERDS--GTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS----ENKCPSIVFYERNGL-------ERSSFDINEQI 271 (1196)
Q Consensus 205 rVWd~~~--G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~----~~~~~~V~~~e~nGl-------~~~~f~l~~~~ 271 (1196)
.+.+... |++.....+.+ ..+.++++|.+++....+-+ ......|...+.++. ..-+-.+....
T Consensus 272 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (711)
T 4hvt_A 272 YILDTKYKNLKLQKINMPSD---ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA 348 (711)
T ss_dssp EEEECSSSSCEEEECCSCTT---CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT
T ss_pred EEEcCCCCCCcceEeecCCc---ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC
Confidence 6667632 66555433332 23456778887775532200 012355766764431 11111122112
Q ss_pred CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCc
Q 000992 272 DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPL 333 (1196)
Q Consensus 272 ~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~ 333 (1196)
...+.+++|..| .++++...++ ...|.+++..+..|.....+.++.... .....++++..
T Consensus 349 ~~~l~~~~~~~~-~l~~~~~~~~-~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~ 409 (711)
T 4hvt_A 349 NEVFNFISTTKD-RVFLATYDNV-VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEE 409 (711)
T ss_dssp TEEEEEEEECSS-CEEEEEEETT-EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSC
T ss_pred CCeEEEEEEECC-EEEEEEEECC-EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCE
Confidence 346889999987 5666666654 234777777666653322243432222 33444555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=89.76 E-value=1.4 Score=44.98 Aligned_cols=102 Identities=15% Similarity=0.030 Sum_probs=58.8
Q ss_pred HHhcChHHHHhhc---CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHH
Q 000992 971 KYAQLFPLGLKLI---TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKD 1047 (1196)
Q Consensus 971 ~~~~ly~~AL~L~---~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~ 1047 (1196)
.. +.|++|++.| .++ ...++..+ +..|...|++++|++.|.+ ++.+. +..
T Consensus 18 ~~-~~~~~A~~~~~~a~~~--~~~~~~~l-------------g~~~~~~g~~~~A~~~~~~------al~~~---~~~-- 70 (213)
T 1hh8_A 18 DK-KDWKGALDAFSAVQDP--HSRICFNI-------------GCMYTILKNMTEAEKAFTR------SINRD---KHL-- 70 (213)
T ss_dssp HT-TCHHHHHHHHHTSSSC--CHHHHHHH-------------HHHHHHTTCHHHHHHHHHH------HHHHC---TTC--
T ss_pred Hh-CCHHHHHHHHHHHcCC--ChHHHHHH-------------HHHHHHcCCHHHHHHHHHH------HHHhC---ccc--
Confidence 45 7788888888 222 12233333 3445555556666555533 23221 111
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC-----------------------HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1048 EVAKLAQELCEELQALGKPGEAAKIALDYCGD-----------------------VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1048 ~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d-----------------------~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
......+|..+...|+|.+|...|.+.+.. .-.-..+|.+.++|++|+....
T Consensus 71 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 71 --AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 245667888888889999998888774331 1233456677778888866543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=0.63 Score=56.35 Aligned_cols=109 Identities=8% Similarity=-0.062 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHH
Q 000992 992 VLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQA 1062 (1196)
Q Consensus 992 i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~ 1062 (1196)
.+..+|..+...++|++|...|.++-+ +-....+|...|++++|+....+. ..+++. ......+|..+..
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 103 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH-PGIALWLGHALED 103 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Confidence 445556666666666666666665521 111224555666666666444321 112222 3466788999999
Q ss_pred cCChHHHHHHHHHhc----CCH---HHHHHHHHHh---cCHHHHHHHHH
Q 000992 1063 LGKPGEAAKIALDYC----GDV---TNGISLLIDA---RDWEEALRVAF 1101 (1196)
Q Consensus 1063 ~~~~~eAa~i~~~yl----~d~---~~Ai~~y~~~---~~w~eA~rla~ 1101 (1196)
.|++++|...|.+.+ ++. .....+|.+. +++++|+....
T Consensus 104 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~ 152 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVR 152 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 999999999887743 122 2234455566 77777766443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=89.65 E-value=1.1 Score=43.30 Aligned_cols=24 Identities=21% Similarity=-0.093 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|++.+|...|.+
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455555555555555555443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=89.47 E-value=1.7 Score=46.23 Aligned_cols=141 Identities=11% Similarity=0.012 Sum_probs=77.4
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCC-------CeEEEeeee-cCcEEEEEECCCCCEEEEEeCCceEEEEeccCc
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDG-------NATEVVGRV-EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD 148 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~-------~~~e~vg~~-~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d 148 (1196)
.+.+|+|+|+|..-++ .+|.+.-.+..+ +.-..+|.. -.+-.++.|-|+|.+-|+ .||.|.-++.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p--- 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP--- 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC---
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC---
Confidence 5679999999997777 788766666544 111233321 122478999999999998 4588864432
Q ss_pred eee--eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE-----EEe--c
Q 000992 149 LLY--ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ-----ASS--E 219 (1196)
Q Consensus 149 ~~~--~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~-----~~~--e 219 (1196)
|.. ...+. .+..|..+-| ..+..|.+.|||.+.| +. + +.+.-+..-++... ++. .
T Consensus 115 P~~~~~~Wl~---~a~~vg~~gw----~~~~~lff~p~G~Lya-v~--d------g~lyr~~~P~~~~~~wl~~~~~~g~ 178 (236)
T 1tl2_A 115 PQSDTDNWIA---RATEVGSGGW----SGFKFLFFHPNGYLYA-VH--G------QQFYKALPPVSNQDNWLARATKIGQ 178 (236)
T ss_dssp CCSTTCCHHH---HSEEEECSSG----GGEEEEEECTTSCEEE-EE--T------TEEEEECCCSSTTCCHHHHCEEEES
T ss_pred CcCCCCceec---cccEeccCCC----CceEEEEECCCceEEE-Ee--C------CcEEecCCCCCCCcccccccceecc
Confidence 100 00000 0111111101 2358899999999999 65 2 33322322122100 011 0
Q ss_pred cCCCceeEEEEcCCCCeEEEE
Q 000992 220 LKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 220 ~~~~~v~slawsPdG~~IAs~ 240 (1196)
..-..-..+.|.|+|++.++.
T Consensus 179 ~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 179 GGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp SSGGGEEEEEECTTSCEEEEE
T ss_pred CCcceEEEEEECCCCcEEEEe
Confidence 111123567799999988876
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=89.41 E-value=45 Score=40.44 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=42.1
Q ss_pred CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCC-EEEEEEC------CCcEEEEE
Q 000992 31 EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKE-ALIVGTS------SGLLLLHS 103 (1196)
Q Consensus 31 ~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~-~La~as~------dG~I~lw~ 103 (1196)
.++.||+++.++.++.+|. .+++..|+...-+.. ....+. ...++ ..=-.+|+ .+++++. +|.|.-+|
T Consensus 116 ~~~~v~~~t~dg~l~AlD~--~TG~~~W~~~~~~~~-~~~~~~-~sP~v-~~~~~~G~~~v~vg~~~~e~~~~g~v~alD 190 (582)
T 1flg_A 116 YGDKVFFGTLDASVVALNK--NTGKVVWKKKFADHG-AGYTMT-GAPTI-VKDGKTGKVLLIHGSSGDEFGVVGRLFARD 190 (582)
T ss_dssp ETTEEEEEETTTEEEEEES--SSCCEEEEEECSCGG-GTCBCC-SCCEE-EECTTTCCEEEEECCBCGGGCCBCEEEEEC
T ss_pred ECCEEEEEeCCCEEEEEEC--CCCCEEeeecCCCCC-cCcccc-cCCEE-eCCCcCCcEEEEEeccccccCCCCEEEEEE
Confidence 4688999999999999999 778777775421100 000010 11111 10011233 4444442 67888888
Q ss_pred CCCCeEE
Q 000992 104 VDGNATE 110 (1196)
Q Consensus 104 ~~~~~~e 110 (1196)
..++++.
T Consensus 191 ~~tG~~~ 197 (582)
T 1flg_A 191 PDTGEEI 197 (582)
T ss_dssp TTTCCEE
T ss_pred CCCCCEE
Confidence 8877653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.19 E-value=0.53 Score=58.76 Aligned_cols=161 Identities=14% Similarity=-0.020 Sum_probs=86.6
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcC---CCc----HHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMG---DSY----HADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g---~~~----~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
+.++.+...+|+|++|+..|.++= ++. +..+.-+ ... +.|++|++.| .+|.. ...+..+|.-+..
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~-g~~~~A~~~~~~al~l~P~~-~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE-LLT-GDYDSATKHFTEVLDTFPGE-LAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHH-TCHHHHHHHHHHHHHHSTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH-HHc-CCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence 445667777899999998887652 221 2233322 455 7788887776 24432 3344566777777
Q ss_pred ccCHHHHHHHHHhCC----C----HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcC--------C
Q 000992 1003 VKCFEDAATTYFCCS----S----LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALG--------K 1065 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~ag----~----~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~--------~ 1065 (1196)
.++|++ ...|.++= + +-.--.+|...|++++|+....+. .++++. ......++..+...+ +
T Consensus 514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~~~~~~~~~~~~~~ 591 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTLLSGRSTSEVTEEQ 591 (681)
T ss_dssp HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHTC-------CCHHH
T ss_pred cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHHHccCCCCCCCHHH
Confidence 777777 66666652 1 112235677778888887655542 233333 234445555553333 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1066 PGEAAKIALDYCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1066 ~~eAa~i~~~yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+.+|.+.+.....+... ....+..-++.++++...
T Consensus 592 ~~~A~~~l~~~~~~~~~--~~~l~~~ll~~~l~~~~~ 626 (681)
T 2pzi_A 592 IRDAARRVEALPPTEPR--VLQIRALVLGGALDWLKD 626 (681)
T ss_dssp HHHHHHHHHTSCTTSTT--HHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCCcHH--HHHHHHHHHHHHHHHHHc
Confidence 66666665552111111 122344455666665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=1.2 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..|...|+..+|...|.+
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHH
Confidence 456677788888888888777655
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=88.73 E-value=5.6 Score=46.31 Aligned_cols=133 Identities=15% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCEEEEEECCCCcEEEEeccC---CC-ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-Ce------------eEE
Q 000992 201 HKRLKVWERDSGTLQASSELK---AF-MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GL------------ERS 263 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~---~~-~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl------------~~~ 263 (1196)
++.||.-+..++...+.+... .. .+..+..||+|+++|..+. ++|.+.+.. |. +-.
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-------~~V~Vv~LP~~~~~~~~~~~~~~~q~~ 112 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-------NEIFVMEVPWGYSNVEDVSIQDAFQIF 112 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-------SEEEEEECCTTCSCCCCHHHHHTTEEE
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-------CeEEEEEecCccccCccccccccccee
Confidence 478888777434333333221 22 4678999999999999876 357776644 21 111
Q ss_pred EEEecc-C--CCCcEEEEEEccCCC---eeEEEEccCCcceEEEEEecCCE--E-EEEEEE-EEec----CCcEEEEEcc
Q 000992 264 SFDINE-Q--IDSTVELLKWNCMSD---LLAAVVRFEEYDSVKICFFSNNH--W-YLKYEI-RYLR----RDGIRFMWHP 329 (1196)
Q Consensus 264 ~f~l~~-~--~~~~V~~laWSpDg~---~LAs~~~d~~~~~V~lW~~~n~~--w-ylkq~l-~~~~----~~~~~v~Wsp 329 (1196)
.|.+.. . ....|..+-|.|-|. .|++-..|. +|++|++.... - -|++.. .|.. .+..+++|.+
T Consensus 113 ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~---~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 113 HYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD---TITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS---CEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred EEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC---EEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 233321 1 135699999999655 688888888 89999987511 0 122110 1221 2237788888
Q ss_pred CCCceEEEEe--cCCcE
Q 000992 330 TKPLQLICWT--LDGQI 344 (1196)
Q Consensus 330 ~~~~~L~~~~--~~g~~ 344 (1196)
++.+|.+.+ .+|.+
T Consensus 190 -~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 190 -DGLTLYCLNTTEGGDI 205 (452)
T ss_dssp -TSSCEEEEECTTSCEE
T ss_pred -CCcEEEEEecCCCCCE
Confidence 568888866 55654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.62 E-value=0.84 Score=42.56 Aligned_cols=23 Identities=9% Similarity=-0.165 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIAL 1074 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~ 1074 (1196)
....+|..+...|++.+|...|.
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Confidence 34445555555555555544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=88.59 E-value=4.1 Score=37.04 Aligned_cols=25 Identities=12% Similarity=-0.057 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.....+|..+...|++.+|...|.+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444555555555555555554433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=88.59 E-value=1.1 Score=44.05 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
.+...+|..+...|+|.+|...+.+-+. ++ -.-..+|...++|++|+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 119 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED 119 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHH
Confidence 3455556666666666666665544221 11 1223445566666666543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=88.12 E-value=0.97 Score=46.78 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=26.2
Q ss_pred HHHHHhcccCHHHHHHHHHhCCC----HHHH----HHHHHHcCCHHHHHHHHh
Q 000992 996 WADHLSDVKCFEDAATTYFCCSS----LEKA----MKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 996 ~A~~L~~~~~~~eAa~~y~~ag~----~~kA----l~~y~~~g~w~~al~la~ 1040 (1196)
+|.-+...++|++|...|.++-. ...+ -.+|...|+|++|+....
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 112 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE 112 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67777777777777777766521 1112 245566666666665443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=88.07 E-value=4.1 Score=45.56 Aligned_cols=101 Identities=8% Similarity=-0.003 Sum_probs=61.3
Q ss_pred ccHHHHhhCHHHHHHHHHHc-CC----C---cHHHHHHHHHHHhcChHHHHhhc-----CCc-------HHHHHHHHHHH
Q 000992 938 YTIDLRLQRFENALKHIVSM-GD----S---YHADCLNLMKKYAQLFPLGLKLI-----TDP-------AKMEQVLEAWA 997 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~-g~----~---~~~~ale~~~~~~~ly~~AL~L~-----~d~-------~~~~~i~~~~A 997 (1196)
+.|..+.|++++|+++|.+. +. . -.-.+++++.+. +-.+.|.+++ .+| ...-.+.+.|-
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHH
Confidence 56677788999999998886 21 1 123445666777 7788888777 244 33444555555
Q ss_pred HHHhcccCHHHHHHHHHhCC----C---HHHHHHHHHHcCCHHHHHHHH
Q 000992 998 DHLSDVKCFEDAATTYFCCS----S---LEKAMKAYRASGNWSGVLTVA 1039 (1196)
Q Consensus 998 ~~L~~~~~~~eAa~~y~~ag----~---~~kAl~~y~~~g~w~~al~la 1039 (1196)
..+...+++.+|..+|+.+. + ....+.++.+.|+|.+|..+.
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 66666667888877776642 1 122334555556666655544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=88.06 E-value=0.57 Score=55.39 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=10.0
Q ss_pred HHHHHHhCCCHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAY 1026 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y 1026 (1196)
-+..|.+.|++++|+++|
T Consensus 323 la~~~~~~g~~~~A~~~~ 340 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECC 340 (457)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHH
Confidence 345555555555555555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=88.05 E-value=3 Score=49.74 Aligned_cols=46 Identities=2% Similarity=-0.029 Sum_probs=27.8
Q ss_pred HHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 970 KKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 970 ~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
.+. +.|++|.++| .+|.....++..||..+...+++++|..+|.+|
T Consensus 332 ~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 332 ESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHT-TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444 5555555555 233322346777777777777777777777665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=87.96 E-value=2.3 Score=46.43 Aligned_cols=52 Identities=15% Similarity=-0.045 Sum_probs=30.8
Q ss_pred HHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1024 KAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1024 ~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
.+|...|+|++|+....+ +..+++. ......+|..+...|+|.+|...|.+.
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 46 LCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444433322 1223333 245667888888999999999888774
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=87.90 E-value=10 Score=44.76 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCEEEEEEccCCC-EEEEEECCCcEEEEECCCCe----EE-E---ee-----eecCcEEEEEECCC----CCEEEEEe
Q 000992 76 DSITAFDYLMEKE-ALIVGTSSGLLLLHSVDGNA----TE-V---VG-----RVEGGVRFISPSPD----GDLLGVTT 135 (1196)
Q Consensus 76 ~~v~~v~~spd~~-~La~as~dG~I~lw~~~~~~----~e-~---vg-----~~~~~I~~~awSPD----g~~LA~~s 135 (1196)
..+++|+|.|||. .|.++...|.|++++.++.. +. + +. .-+++...++|+|| |.+-++-+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEe
Confidence 3689999999996 45667889999999876431 11 1 11 11468999999997 55555544
|
| >3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.89 E-value=6.8 Score=45.88 Aligned_cols=90 Identities=17% Similarity=0.300 Sum_probs=61.1
Q ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHH-HHHcCCh------HHHHHHHHHhcCCHHHHH
Q 000992 1012 TYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEE-LQALGKP------GEAAKIALDYCGDVTNGI 1084 (1196)
Q Consensus 1012 ~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~-L~~~~~~------~eAa~i~~~yl~d~~~Ai 1084 (1196)
-+...|+.++|+++..+.+.|-.|+-||... +++..+++..+++.. +.. +.+ .-...+|.-+.|+.+.+|
T Consensus 159 ~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~--g~e~~~~V~~~y~~~~~~~-~~~~~~~~~~~Lr~Ly~v~sGn~~~~V 235 (441)
T 3mzk_B 159 AFLQTGNHDEALRLALSKRDYAIALLVGSLM--GKDRWSEVIQKYLYEGFTA-GPNDQKELAHFLLLIFQVFVGNSKMAI 235 (441)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHCC-------CTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHhCCcHHHHHHHHHhc--CHHHHHHHHHHHHHhhccc-CCccccccccHHHHHHHHHcCCHHHHH
Confidence 3456799999999999999999999999875 555444444333321 110 111 113356677789999999
Q ss_pred HHHH--------HhcCHHHHHHHHHhcC
Q 000992 1085 SLLI--------DARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1085 ~~y~--------~~~~w~eA~rla~~~~ 1104 (1196)
+.+. ...+|.|.+.+.-.+.
T Consensus 236 ~~l~~~~~~~~~~l~~Wre~lA~IlsN~ 263 (441)
T 3mzk_B 236 KSFYTNNETSQWASENWKSIVAAVLINI 263 (441)
T ss_dssp HHHHHCHHHHHHHHHSHHHHHHHHHHTS
T ss_pred HHhccCCccccchHhHHHHHHHHHHhCC
Confidence 9873 3459999988776654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=87.79 E-value=42 Score=38.07 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=72.4
Q ss_pred CCEEEEEECCCCcEEEEeccCCCceeEEEEcCC----CCe--EEEEecCCCCCCCCeEEEEeCC--CeeEEEEEecc---
Q 000992 201 HKRLKVWERDSGTLQASSELKAFMGAVLEWMPS----GAN--IAAVYDRKSENKCPSIVFYERN--GLERSSFDINE--- 269 (1196)
Q Consensus 201 d~~irVWd~~~G~l~~~~e~~~~~v~slawsPd----G~~--IAs~s~d~~~~~~~~V~~~e~n--Gl~~~~f~l~~--- 269 (1196)
.+-+.|||. +|+++..... +..+.+..+|+ |+. ||.++... +..++|.+|+.+ ...... +..
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~--~~~n~l~vf~iDp~~~~l~~--i~~~~~ 121 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS--EGKNTIEIYAIDGKNGTLQS--MTDPDH 121 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS--TTCCEEEEEEECTTTCCEEE--CSCTTS
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC--CCCCeEEEEEECCCCCceee--cccccc
Confidence 467999999 9999988753 56788888884 222 45554421 003689999653 111111 111
Q ss_pred C--CC-CcEEEEEE--ccC-CC-eeEEEEccCCcceEEEEEec---CCEE--EEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 270 Q--ID-STVELLKW--NCM-SD-LLAAVVRFEEYDSVKICFFS---NNHW--YLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 270 ~--~~-~~V~~laW--SpD-g~-~LAs~~~d~~~~~V~lW~~~---n~~w--ylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
+ .. ..+..||. +|+ |+ ++.+...++ .+..|.+. +... .+..++... ...-.+.-+++... |.+
T Consensus 122 pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G---~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~-Lyv 196 (355)
T 3amr_A 122 PIATAINEVYGFTLYHSQKTGKYYAMVTGKEG---EFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR-LYI 196 (355)
T ss_dssp CEECCCSSCCCEEEEECTTTCCEEEEEECSSS---EEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE-EEE
T ss_pred CcCCCCCCeeEEEEEecCCCCcEEEEEECCCC---eEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe-EEE
Confidence 1 11 45777888 885 44 344444444 67777763 3322 222333332 12255667777664 677
Q ss_pred EecC
Q 000992 338 WTLD 341 (1196)
Q Consensus 338 ~~~~ 341 (1196)
.-.+
T Consensus 197 ~eEd 200 (355)
T 3amr_A 197 AEED 200 (355)
T ss_dssp EETT
T ss_pred eccc
Confidence 6654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=87.16 E-value=2.9 Score=39.99 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=8.1
Q ss_pred HHHHHHhcccCHHHHHHHH
Q 000992 995 AWADHLSDVKCFEDAATTY 1013 (1196)
Q Consensus 995 ~~A~~L~~~~~~~eAa~~y 1013 (1196)
..|..+...++|++|..+|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~ 41 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIF 41 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHH
Confidence 3344444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.12 E-value=3.5 Score=38.90 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV--- 1080 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~--- 1080 (1196)
+-+..|.+.|++++|+++|.+ |+.+- +.+ ......+|..+...|++.+|...|.+-+. ++
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~------al~~~---p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNE------AVKRD---PEN----AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHhC---CCC----HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 445566666777777776633 33321 112 24566777788888888888877766321 11
Q ss_pred HHHHHHHHHhcCHHHHHHH
Q 000992 1081 TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1081 ~~Ai~~y~~~~~w~eA~rl 1099 (1196)
-.-..+|.+.++|++|+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH
Confidence 1223456677777777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=87.05 E-value=1.7 Score=49.89 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.-+..|.+.|++++|+++|.++ +. ++++. ...+..+|..+...|+|++|...|.+
T Consensus 278 nla~~~~~~g~~~~A~~~~~~a------l~------~~p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 278 NIGACKLKMSDWQGAVDSCLEA------LE------IDPSN-TKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HT------TCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHH------HH------hCchh-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3345555556666666555332 21 12211 23445566666666666665554333
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=86.84 E-value=3.5 Score=43.78 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=65.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEeccccccccc-ceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERA-SIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.+++|++++. ||.+ .++.+++.+. .+...+ |- .. ...+-.... ..=.++.|-|+|..-++ .||.|.
T Consensus 42 ~~~~laf~P~G~-LYaV-~~G~Ly~~~~--~t~~~~~W~-~s-~t~IG~~Gw---~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV-LNDKIYKGTP--PTHDNDNWM-GR-AKKIGNGGW---NQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp TCSEEEECTTSC-EEEE-ETTEEEEESC--CCSTTCCHH-HH-CEEEECSCG---GGCSEEEECTTSCEEEE--ETTEEE
T ss_pred cceeEEECCCcc-EEEE-eCCeEEEECC--CCCCccccc-cc-ccEeccccc---ccceEEEECCCCCEEEe--CCCEEE
Confidence 567899999555 8888 6666999887 332211 10 00 000000000 00157888999988877 569998
Q ss_pred EEECCC--C-----eEEEeeeec-CcEEEEEECCCCCEEEEEeCCceEE
Q 000992 101 LHSVDG--N-----ATEVVGRVE-GGVRFISPSPDGDLLGVTTGFGQIL 141 (1196)
Q Consensus 101 lw~~~~--~-----~~e~vg~~~-~~I~~~awSPDg~~LA~~s~d~tV~ 141 (1196)
-++..+ . .-..+|... ..+.++.+.|||.+-|+. |+.+.
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 888743 1 113444311 458999999999999987 66653
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=86.82 E-value=66 Score=39.32 Aligned_cols=110 Identities=13% Similarity=-0.044 Sum_probs=69.9
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE--CCCc
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT--SSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as--~dG~ 98 (1196)
.+.++|+|..++.||.+.. .+.|...++ ..+.. .+ +.... ...+.+|++.|.+..|..+. ..+.
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~--dG~~~--~~------l~~~~---l~~P~~Iavdp~~g~ly~tD~g~~~~ 151 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNL--DGSLR--KV------LFWQE---LDQPRAIALDPSSGFMYWTDWGEVPK 151 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSC--EE------EECSS---CSCCCCEEEETTTTEEEEEECSSSCE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEEC--CCCCE--EE------EEeCC---CCCCceEEEecCCCeEEEeccCCCCE
Confidence 6789999999999999865 556777777 22221 11 11111 24678899999866665554 2467
Q ss_pred EEEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEe-CCceEEEEe
Q 000992 99 LLLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTT-GFGQILVMT 144 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~ 144 (1196)
|...+.++.....+. ..-..-..++++|+++.|-.+. ..+.|...+
T Consensus 152 I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 152 IERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 777788875444332 2124568899999888777774 344555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=86.59 E-value=1.2 Score=40.33 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~yl----~d~---~~Ai~~y~~~~~w~eA~rl 1099 (1196)
...+|..+...|++.+|..++.+.+ .+. -....+|.+.+++++|+..
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444555555555555555554421 111 1223445555555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=86.29 E-value=2.7 Score=41.89 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
.....+|..+...|++.+|...|.+.
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 35556777777777777777776663
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.15 E-value=1.3 Score=39.66 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=9.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHH
Q 000992 1054 QELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1054 ~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..+|..+...|++.+|...|.+
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~ 97 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEE 97 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444444444444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=86.11 E-value=2.5 Score=39.44 Aligned_cols=20 Identities=15% Similarity=-0.142 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i 1072 (1196)
...+|..+...|++.+|...
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~ 99 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIAN 99 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445445445555544444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=85.89 E-value=72 Score=38.94 Aligned_cols=195 Identities=10% Similarity=0.003 Sum_probs=107.4
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||+.++.||.+.- .+.|+.++++ .......+ +..+ -..+.++++.+.++.|..+ +..+.|
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~--g~~~~~~v--~~~~--------~~~P~GlAvD~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFN--KTESVQNV--VVSG--------LLSPDGLACDWLGEKLYWTDSETNRI 108 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-------CEEE--ECSS--------CSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEcc--CCCceEEE--EeCC--------CCCcCeEEEEecCCEEEEEeCCCCEE
Confidence 6788999999999999854 5578888883 22110111 1111 1478999999977766655 456889
Q ss_pred EEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.+.++.....+. ..-..-..+++.|.+..|-.+.. .+.|...+.++....... ... -..-
T Consensus 109 ~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~--~~~-------------~~~P 173 (619)
T 3s94_A 109 EVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII--NSE-------------IYWP 173 (619)
T ss_dssp EEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--CSS-------------CSSE
T ss_pred EEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE--eCC-------------CCCC
Confidence 99999986554332 21234677889887666655542 234443333332211111 000 0123
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
..|+..++++.|- ++- .....|...|. +|.-..+. ++.-.....|++-++ .|..+... ...|...
T Consensus 174 ~Glald~~~~~LY-~aD-----~~~~~I~~~~~-dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~-----~~~V~~~ 239 (619)
T 3s94_A 174 NGLTLDYEEQKLY-WAD-----AKLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLFED--ILYWTDWS-----THSILAC 239 (619)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTCCEEEESS-SCCEEC---------CCCEEESSS--EEEEECTT-----TCSEEEE
T ss_pred cEEEEEccCCEEE-EEe-----CCCCeEEEecC-CCCccEEEEeCCCCCceEEEEeCC--EEEEecCC-----CCEEEEE
Confidence 6899998766554 342 23578888898 66544332 211112245666555 44444332 2356555
Q ss_pred eC
Q 000992 256 ER 257 (1196)
Q Consensus 256 e~ 257 (1196)
++
T Consensus 240 d~ 241 (619)
T 3s94_A 240 NK 241 (619)
T ss_dssp ES
T ss_pred EC
Confidence 54
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=85.30 E-value=12 Score=43.61 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=69.0
Q ss_pred cEEEEEEccCCCeeEEEEccCCcceEEEEEec-CCEEEE---------EEEEEEec-----CC-cEEEEEccCCCc--eE
Q 000992 274 TVELLKWNCMSDLLAAVVRFEEYDSVKICFFS-NNHWYL---------KYEIRYLR-----RD-GIRFMWHPTKPL--QL 335 (1196)
Q Consensus 274 ~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~-n~~wyl---------kq~l~~~~-----~~-~~~v~Wsp~~~~--~L 335 (1196)
.|..+.-||+|++||..+... |.+-.+. .++-.- ...+...+ .. ...+.|||-+.. +|
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~----V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~L 142 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNE----IFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCI 142 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSE----EEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEE
T ss_pred ceeEEEECCCCCEEEEecCCe----EEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeE
Confidence 578899999999999997664 8887776 221100 01111111 12 277889998764 78
Q ss_pred EEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEE--
Q 000992 336 ICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAIL-- 412 (1196)
Q Consensus 336 ~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~-- 412 (1196)
.+.+.++.+..|+..-+ . +.-. + |+.. .+. +.+ .....|.+++|+++| =.|-+++
T Consensus 143 VVLtsD~~Ir~yDl~~s--~-~~P~--~----------L~k~---~~~--fg~d~~~~ev~S~~Fg~~~--lTLYvl~~t 200 (452)
T 3pbp_A 143 VVLKEDDTITMFDILNS--Q-EKPI--V----------LNKP---NNS--FGLDARVNDITDLEFSKDG--LTLYCLNTT 200 (452)
T ss_dssp EEEETTSCEEEEETTCT--T-SCCE--E----------ESCC---CSE--EESCSSCCCEEEEEECTTS--SCEEEEECT
T ss_pred EEEecCCEEEEEEcccC--C-CCCc--c----------hhcc---ccc--cCCCcccceEEEEEEcCCC--cEEEEEecC
Confidence 88888887764443210 0 1000 1 1100 010 111 122468899999987 5666655
Q ss_pred CCCcEEEEe
Q 000992 413 SDGCLCVVD 421 (1196)
Q Consensus 413 ~dg~v~lw~ 421 (1196)
.+|.|+-.-
T Consensus 201 ~~GDIYAlc 209 (452)
T 3pbp_A 201 EGGDIFAFY 209 (452)
T ss_dssp TSCEEEEES
T ss_pred CCCCEEEEC
Confidence 667765443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.93 E-value=1.3 Score=41.88 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=11.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...+|..+...|++.+|...|.+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555544433
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.77 E-value=67 Score=37.57 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred ccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCee
Q 000992 281 NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENST 360 (1196)
Q Consensus 281 SpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~ 360 (1196)
+|..++||.-.... +|++++.. ...|...+....+..|.|. +..+
T Consensus 74 nP~~~iiALrag~~----lQiFnle~-------------------------K~klks~~~~e~VvfWkWi------s~~~ 118 (494)
T 1bpo_A 74 NPASKVIALKAGKT----LQIFNIEM-------------------------KSKMKAHTMTDDVTFWKWI------SLNT 118 (494)
T ss_dssp CSSSSCEEEEETTE----EEEEETTT-------------------------TEEEEEEECSSCCCEEEEE------ETTE
T ss_pred CCCCcEEEEecCCe----EEEEchHH-------------------------hhhhcceecCCCceEEEec------CCCe
Q ss_pred EEEEcCCEEEEeeccccCCCCCceeeeecCCCC-EEEEEEecCCCCCEEEEEECC-------CcEEEEeCCCCCcccccc
Q 000992 361 ALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTA-VTEMAFYSKSSKNCLAAILSD-------GCLCVVDLPAPDMLEDLE 432 (1196)
Q Consensus 361 v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~-V~~Vafspdg~~~~lAs~~~d-------g~v~lw~~~~~~~~~~~~ 432 (1196)
.+.+-++.|.-|++.+...|-.|..+.-.+.+. |..-.-+++. +.++..+-. |.+.||..+ ....+.+.
T Consensus 119 l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ~ie 195 (494)
T 1bpo_A 119 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVD-RKVSQPIE 195 (494)
T ss_dssp EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEEST-TCCEEEEC
T ss_pred EEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeecc-ccccchhe
Q ss_pred CCceeeeeecccccCCcEEEEEEecCC-----eEEEEEecCCC-CceEEEEeeccCCccccchhhhhhhhcccccccccc
Q 000992 433 GTEFVVEACISETAFGSVIHLIWLGSH-----LLLSVSHHGPR-HSNYFRGATLNEDGLLGFYAQEIELACSEDHVQGLL 506 (1196)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~-----~lla~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (1196)
|| ...-..+--+| ++++.+..... ..+-+..++..+.+...|-.+-+.+.--++..
T Consensus 196 Gh--------------aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~---- 257 (494)
T 1bpo_A 196 GH--------------AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQ---- 257 (494)
T ss_dssp CS--------------EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTST----
T ss_pred ee--------------eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccc----
Q ss_pred cccccceeeeeeeccCCcEEEEecCCCCCceEEEEeeCCeEEEEeccccccCCCCCCCCCCCCCCCCceeEEEecCCCCC
Q 000992 507 TCAGWHAKVSTQIPLEGLVIAIAPNNAKKYSAFLQFHGGKISEYMSRVGLTGGALTHDDASFPSSCPWMNVVSVGTNGPL 586 (1196)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~ 586 (1196)
+.--+++..|+ ..+.+|+.+.-|-++.|+..+ +..+---..|+..-.+......
T Consensus 258 ---------------~DFPvamqvs~-kygviyviTK~G~i~lyDleT--------gt~i~~nrIs~~~iF~t~~~~~-- 311 (494)
T 1bpo_A 258 ---------------NDFPVAMQISE-KHDVVFLITKYGYIHLYDLET--------GTCIYMNRISGETIFVTAPHEA-- 311 (494)
T ss_dssp ---------------TCCEEEEEEET-TTTEEEEEETTSEEEEEETTT--------CCEEEEEECCSSCEEEEEEETT--
T ss_pred ---------------cCceeEEEecc-cCCEEEEEecCceEEEEeccc--------ceeeeeecccCCceEEecccCC--
Q ss_pred ccEEEEEcCCCceE
Q 000992 587 KPLLFGLDDGGRLH 600 (1196)
Q Consensus 587 ~~~~~gL~~~~~L~ 600 (1196)
..-++|+.++|+.+
T Consensus 312 ~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 312 TAGIIGVNRKGQVL 325 (494)
T ss_dssp TTEEEEEETTCEEE
T ss_pred CCcEEEEccCceEE
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=84.40 E-value=1.5 Score=49.34 Aligned_cols=80 Identities=13% Similarity=-0.025 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhCCC----HH----HHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHH
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCCSS----LE----KAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQ 1061 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~ag~----~~----kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~ 1061 (1196)
.++..+|.-+...++|++|...|.++=. .. ..-.+|...|+|++|+....+. .++++. ......++..+.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 4555556666666666666666655411 11 1124455555555555333221 111111 235566777777
Q ss_pred HcCChHHHHH
Q 000992 1062 ALGKPGEAAK 1071 (1196)
Q Consensus 1062 ~~~~~~eAa~ 1071 (1196)
..|++.+|.+
T Consensus 276 ~~~~~~~a~~ 285 (336)
T 1p5q_A 276 RIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778877744
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=84.30 E-value=5.2 Score=38.98 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhCCC
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCCSS 1018 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~ag~ 1018 (1196)
...+...|..+..+++|++|...|.++=.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~ 39 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT 39 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555667777777777777777766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.11 E-value=6.1 Score=36.94 Aligned_cols=51 Identities=20% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhc----CCH---HHHHHHHHHhcCHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALDYC----GDV---TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl----~d~---~~Ai~~y~~~~~w~eA~rla 1100 (1196)
......+|..+...|+|.+|...|.+.+ .+. -....+|...++|++|+...
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456667777777788888777766532 121 12234556666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=84.11 E-value=3.3 Score=48.76 Aligned_cols=26 Identities=8% Similarity=-0.046 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 991 QVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 991 ~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
.++..+|.-+...++|++|...|.++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44445555555556666665555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=83.95 E-value=6 Score=45.51 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=41.7
Q ss_pred hhcccHHHHhhC-HHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHh
Q 000992 935 LMRYTIDLRLQR-FENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLS 1001 (1196)
Q Consensus 935 ~~r~~Id~~L~r-y~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~ 1001 (1196)
..++.+...+|+ |++|+..|.++ .+... ..+ ..+... +.|++|++.| .+|... .++...|.-+.
T Consensus 135 ~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g-~~~~~~-g~~~eAl~~~~kal~ldP~~~-~a~~~lg~~~~ 211 (382)
T 2h6f_A 135 HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR-VLVEWL-RDPSQELEFIADILNQDAKNY-HAWQHRQWVIQ 211 (382)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHH-TCCTTHHHHHHHHHHHCTTCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHc-cCHHHHHHHHHHHHHhCccCH-HHHHHHHHHHH
Confidence 344566677887 99999888765 22211 222 123555 6777777766 355433 23334444444
Q ss_pred cccCHHHHHHHHHh
Q 000992 1002 DVKCFEDAATTYFC 1015 (1196)
Q Consensus 1002 ~~~~~~eAa~~y~~ 1015 (1196)
..++|++|...|.+
T Consensus 212 ~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 212 EFKLWDNELQYVDQ 225 (382)
T ss_dssp HHTCCTTHHHHHHH
T ss_pred HcCChHHHHHHHHH
Confidence 44444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=83.60 E-value=2.3 Score=38.76 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=7.2
Q ss_pred HHHHHHHHcCChHHHHHH
Q 000992 1055 ELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1055 ~la~~L~~~~~~~eAa~i 1072 (1196)
.+|..+...|++.+|...
T Consensus 85 ~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHH
Confidence 334444444444444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.40 E-value=1.2 Score=41.10 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 000992 1053 AQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
...+|..+...|++.+|...|.+
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 34444444445555555444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=83.23 E-value=7.6 Score=36.49 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|+|.+|...|.+
T Consensus 44 ~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 44 FYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHH
Confidence 444556556666666666555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.14 E-value=7.9 Score=35.63 Aligned_cols=81 Identities=21% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH--
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV-- 1080 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~-- 1080 (1196)
..-+..|...|++++|++.|.+ ++.+. +.+ ......+|..+...|+|.+|...|.+-+. +.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~------al~~~---p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTE------MIKRA---PED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH------HHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH------HHHhC---CCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 4445566666777777776643 33322 111 24566778888888888888887766331 11
Q ss_pred -HHHHHHHHHhcCHHHHHHHH
Q 000992 1081 -TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1081 -~~Ai~~y~~~~~w~eA~rla 1100 (1196)
-.-..+|...++|++|+...
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~ 95 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETL 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHH
Confidence 12334566667777776543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=83.14 E-value=2.5 Score=48.70 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=41.9
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcHHHHH----HHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYHADCL----NLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~al----e~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
..+..+...+|+|++|+..|.++ .+.. -.|. ..+... +.|++|++.| .+|.. ...+...|.-|..
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~-g~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEF-KLWDNELQYVDQLLKEDVRN-NSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 34456677789999999988765 2221 1221 233566 7888888877 35542 3445455555555
Q ss_pred -ccCHHHH
Q 000992 1003 -VKCFEDA 1009 (1196)
Q Consensus 1003 -~~~~~eA 1009 (1196)
.+.+++|
T Consensus 247 l~~~~~eA 254 (382)
T 2h6f_A 247 TTGYNDRA 254 (382)
T ss_dssp TTCSCSHH
T ss_pred hcCcchHH
Confidence 3333554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=82.80 E-value=4.3 Score=44.75 Aligned_cols=109 Identities=8% Similarity=0.007 Sum_probs=59.3
Q ss_pred HHhhCHHHHHHHHHHcCCCcHH------HHHHHHHHHhcChHHHHhhc----CCcHHH--HHHHHHHHHHHhcccCHHHH
Q 000992 942 LRLQRFENALKHIVSMGDSYHA------DCLNLMKKYAQLFPLGLKLI----TDPAKM--EQVLEAWADHLSDVKCFEDA 1009 (1196)
Q Consensus 942 ~~L~ry~~Al~~l~~~g~~~~~------~ale~~~~~~~ly~~AL~L~----~d~~~~--~~i~~~~A~~L~~~~~~~eA 1009 (1196)
.-.|+|++|.+.|..+-....+ .++ +..+. +.|++|+..+ ..+... ..++- -.
T Consensus 113 ~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~~~-~r~~dA~~~l~~a~~~~d~~~~~~a~~-------------~L 177 (282)
T 4f3v_A 113 AAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYGAA-ERWTDVIDQVKSAGKWPDKFLAGAAGV-------------AH 177 (282)
T ss_dssp HHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHHHT-TCHHHHHHHHTTGGGCSCHHHHHHHHH-------------HH
T ss_pred HHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHc-CCHHHHHHHHHHhhccCCcccHHHHHH-------------HH
Confidence 3378888888888766321122 222 22444 6677777766 111111 11222 22
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.++...|++++|+++|.++. .-+.++....+....+|-.|.+.|+..+|..+|.+
T Consensus 178 G~al~~LG~~~eAl~~l~~a~----------~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEAN----------DSPAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----------TSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh----------cCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445566666666666665331 10111221234556778888889999999888776
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=82.77 E-value=9.9 Score=36.10 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc----CCH---
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC----GDV--- 1080 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl----~d~--- 1080 (1196)
.-+..|...|++++|++.|.+ ++.+- +.+ ......+|..+...|+|.+|...|.+-+ +++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~------al~~~---p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQA------LCMLD---HYD----ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHHC---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHHccHHHHHHHHHH------HHHhC---Ccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 345667777888888888743 33311 212 2456678888888999999988887732 222
Q ss_pred HHHHHHHHHhcCHHHHHHHHH
Q 000992 1081 TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1081 ~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
-....+|...++|++|+....
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 234456778888888876543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=82.57 E-value=6.8 Score=38.16 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=42.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---H
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV---T 1081 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~ 1081 (1196)
-+..|...|++++|+++|.+ ++.+... + ......+|..+...|+|.+|...|.+-+. +. -
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~------al~~~p~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 83 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQ------ALSIAPA---N----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHH------HHHHSTT---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH------HHHhCCc---C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34445555666666665533 2332111 1 24566777777788888888877766321 11 2
Q ss_pred HHHHHHHHhcCHHHHHHH
Q 000992 1082 NGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1082 ~Ai~~y~~~~~w~eA~rl 1099 (1196)
.-..+|.+.++|++|+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~ 101 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEA 101 (164)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH
Confidence 233455566666666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.54 E-value=3.6 Score=41.53 Aligned_cols=50 Identities=24% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHhcChHHHHhhc--------C-----CcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 966 LNLMKKYAQLFPLGLKLI--------T-----DPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 966 le~~~~~~~ly~~AL~L~--------~-----d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
++..-++ +||+-|.-++ . .|...-+++-.+|+-+..+++|..|...|.+|
T Consensus 27 ik~L~d~-~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAA-GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4445566 7888877654 1 24456678889999999999999999999885
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=82.46 E-value=15 Score=32.64 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQEL 1056 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~l 1056 (1196)
|......+...|..+...++|++|..+|.++-. +-....+|...|++++|+....+. ...+.. ......+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l 83 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNL 83 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHH
Confidence 333345667788888888999999888877621 122346677788888887655432 101111 2334455
Q ss_pred HHHHHHcCChHHHHHHHHH
Q 000992 1057 CEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1057 a~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..+...|++.+|...|.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 5555555555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=81.52 E-value=3.8 Score=39.31 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=15.2
Q ss_pred hhhcccHHHHhhCHHHHHHHHHHc
Q 000992 934 LLMRYTIDLRLQRFENALKHIVSM 957 (1196)
Q Consensus 934 ~~~r~~Id~~L~ry~~Al~~l~~~ 957 (1196)
....+.+....|+|++|+.+|.++
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~a 39 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQA 39 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 344455556677777777776654
|
| >4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A* | Back alignment and structure |
|---|
Probab=81.51 E-value=13 Score=45.01 Aligned_cols=112 Identities=12% Similarity=0.004 Sum_probs=67.4
Q ss_pred ceeEEeeecCCCEEEEEeCC----------------------CcEEEEeccccc---ccccceeecc---ccc-----cc
Q 000992 22 ILQFSALDIEQNRLFFASSA----------------------NNIYSAQLSSFQ---NERASIKTAI---SAE-----IE 68 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~----------------------~~i~~~~~~~~~---~~~~~~~~~~---~~~-----l~ 68 (1196)
.+..+++++.+..||++..+ ++|++|...... ....|.+--+ |.. ..
T Consensus 385 RpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~~ 464 (592)
T 4a9v_A 385 RPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPKG 464 (592)
T ss_dssp CEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGGG
T ss_pred CccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccccccc
Confidence 67889999988899998321 569999872110 1122443211 000 00
Q ss_pred c-ccC---CCCCCEEEEEEccCCCEEEEEECCC-------------cEEEEECCCCeEEEeee--ecCcEEEEEECCCCC
Q 000992 69 H-IDL---EPGDSITAFDYLMEKEALIVGTSSG-------------LLLLHSVDGNATEVVGR--VEGGVRFISPSPDGD 129 (1196)
Q Consensus 69 ~-~~~---~~~~~v~~v~~spd~~~La~as~dG-------------~I~lw~~~~~~~e~vg~--~~~~I~~~awSPDg~ 129 (1196)
+ .+. .+-..+..|.|.++|... +++..+ .|..++..++++..+-. ....++.++||||++
T Consensus 465 g~~~~~~~~~fnsPDnL~fd~~G~LW-f~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~k 543 (592)
T 4a9v_A 465 GSSNITPQNMFNSPDGLGFDKAGRLW-ILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp CCTTCCTTTCCCCEEEEEECTTCCEE-EEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSS
T ss_pred CccCccccCccCCCCceEECCCCCEE-EEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCC
Confidence 0 000 012578999999999654 433221 46667777787764332 124689999999999
Q ss_pred EEEEE
Q 000992 130 LLGVT 134 (1196)
Q Consensus 130 ~LA~~ 134 (1196)
+|-++
T Consensus 544 tLfV~ 548 (592)
T 4a9v_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=81.31 E-value=7.5 Score=35.16 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....+|..+...|+|.+|...|.+
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 445566666666777777666655
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=81.25 E-value=1.7 Score=38.53 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHH
Q 000992 1053 AQELCEELQAL-GKPGEAAKIALD 1075 (1196)
Q Consensus 1053 ~~~la~~L~~~-~~~~eAa~i~~~ 1075 (1196)
...+|..+... |++.+|.+.+.+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 33444444444 444444444433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.76 E-value=54 Score=35.24 Aligned_cols=201 Identities=8% Similarity=0.002 Sum_probs=0.0
Q ss_pred CCCEEEEEE-CCC-----cEEEEECCCCeEEEeeeecCc-EEEEEECCCCCEEEEEeCC-----ceEEEEe---cc---C
Q 000992 86 EKEALIVGT-SSG-----LLLLHSVDGNATEVVGRVEGG-VRFISPSPDGDLLGVTTGF-----GQILVMT---HD---W 147 (1196)
Q Consensus 86 d~~~La~as-~dG-----~I~lw~~~~~~~e~vg~~~~~-I~~~awSPDg~~LA~~s~d-----~tV~l~~---~~---~ 147 (1196)
++..+++|+ .++ ++..+|+.+++...+.....+ -...+...++++++.++.+ ..+.+++ .. |
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
..+...+..... ..++.. +|+.++ .++.+.. .....+.+||..+++-.............
T Consensus 94 ~~~~~~p~~r~~-----------------~~~~~~-~~~lyv-~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 153 (301)
T 2vpj_A 94 YSVAPMNVRRGL-----------------AGATTL-GDMIYV-SGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAREGA 153 (301)
T ss_dssp EEECCCSSCCBS-----------------CEEEEE-TTEEEE-ECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCCBSC
T ss_pred EECCCCCCCccc-----------------eeEEEE-CCEEEE-EcccCCC-cccceEEEEcCCCCeEEECCCCCCCcccc
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCc--ceEEEEEec
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEY--DSVKICFFS 305 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~--~~V~lW~~~ 305 (1196)
-+..-+|++++.|+.+... ...++..|+.....-. .+..........-+..-++++++.++.+... ..|.+||..
T Consensus 154 ~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~--~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 230 (301)
T 2vpj_A 154 GLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWT--NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIR 230 (301)
T ss_dssp EEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEE--EECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred eEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEE--eCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCC
Q ss_pred CCEE
Q 000992 306 NNHW 309 (1196)
Q Consensus 306 n~~w 309 (1196)
+..|
T Consensus 231 ~~~W 234 (301)
T 2vpj_A 231 TDSW 234 (301)
T ss_dssp TTEE
T ss_pred CCcE
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=80.65 E-value=6 Score=47.29 Aligned_cols=51 Identities=12% Similarity=-0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC-----C---HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG-----D---VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~-----d---~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+..+...+.+.|+.++|.+++.+... | +...|..||+.+++++|.++-..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 567788888999999999999987532 2 56899999999999999987643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=80.59 E-value=8.8 Score=35.72 Aligned_cols=57 Identities=16% Similarity=0.007 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+-+-+..|.+.|++++|+.+|.+ ++.+- +-+ ......+|..+...|++.+|...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~------al~~~---P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEA------VCQKE---PER----EEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH------HHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH------HHHHC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455666677777777777643 33321 111 23455677777778888888877766
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=80.46 E-value=15 Score=32.61 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=33.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-+.+|...|++++|+++|. +++.+... . ......+|..+...|++.+|...|.+
T Consensus 13 lg~~~~~~g~~~~A~~~~~------~al~~~p~---~----~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFE------ELVETDPD---Y----VGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHH------HHHHHSTT---C----THHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH------HHHHhCCC---c----HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3556666777777777763 33432211 1 13556677777777888877777555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=80.35 E-value=8.8 Score=43.75 Aligned_cols=51 Identities=10% Similarity=0.015 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHhcC-CHH------HHHHHHHHhcCHHHHHHHH
Q 000992 1050 AKLAQELCEELQALGKPGEAAKIALDYCG-DVT------NGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1050 ~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d~~------~Ai~~y~~~~~w~eA~rla 1100 (1196)
..++..+|..+...|+|.+|...|.+-+. +++ .-..+|.+.++|++|+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l 330 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHH
Confidence 45777889999999999999999887543 221 2235677788888887543
|
| >3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=80.34 E-value=9.3 Score=46.56 Aligned_cols=58 Identities=22% Similarity=0.159 Sum_probs=39.7
Q ss_pred CCEEEEEEccCCCEEEEEECCC-------------cEEEEECCCCeEE--EeeeecCcEEEEEECCCCCEEEEE
Q 000992 76 DSITAFDYLMEKEALIVGTSSG-------------LLLLHSVDGNATE--VVGRVEGGVRFISPSPDGDLLGVT 134 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG-------------~I~lw~~~~~~~e--~vg~~~~~I~~~awSPDg~~LA~~ 134 (1196)
+.+-.|.|+|+|.. .++...+ .+...+..++++. ..+.....++.++|||||++|-+.
T Consensus 476 ~~PDNL~fd~~G~L-wI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 476 NSPDGLGFDKAGRL-WILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCE-EEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred cCCcceEECCCCCE-EEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46788999999984 4444321 2444566667665 334445679999999999988654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=80.23 E-value=17 Score=36.36 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCC----CHH-HHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKL----GKD-EVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~----~~~-~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
..-+..+...|+|++|+++| ++|+.+....+. +.. ........++..|...|+|.+|...|.+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y------~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANC------RRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHH------HHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHH------HHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666778888888887 445554433110 110 0123677788889999999999887655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=80.01 E-value=2.3 Score=42.38 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
....++..+...|++.+|...|.+
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHH
Confidence 455677888888888888888765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1196 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.84 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.82 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.82 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.79 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.78 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.78 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.75 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.73 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.71 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.71 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.7 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.69 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.65 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.63 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.61 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.6 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.54 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.35 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.14 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.12 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.03 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.01 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.98 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.84 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.79 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.65 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.62 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.6 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.58 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.58 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.57 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.57 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.48 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.48 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.44 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.37 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.33 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.21 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.86 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.45 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.18 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 96.49 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.23 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.23 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.9 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 95.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.26 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.47 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 94.3 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 93.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 93.03 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 92.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 92.57 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 91.65 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 91.34 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.04 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 89.59 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.51 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 89.48 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 89.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 88.52 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 88.43 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 87.99 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 87.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 87.05 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 86.57 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 86.42 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 86.01 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 85.92 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 85.89 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 85.54 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 84.64 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 84.62 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 84.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 83.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 83.41 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 83.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 82.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 82.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 81.64 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 81.34 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 81.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 80.95 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 80.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 80.38 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.5e-28 Score=275.82 Aligned_cols=277 Identities=13% Similarity=0.114 Sum_probs=212.2
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe----E--EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA----T--EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW- 147 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~----~--e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~- 147 (1196)
.+.|.+|+|+|+|++||+|+ ||.|++||..++. + .....|++.|.+++|||||++||+++.|++|++|+...
T Consensus 51 ~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~ 129 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp SSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc
Confidence 46899999999999999987 8999999986531 1 13334688999999999999999999999999997432
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeE
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAV 227 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~s 227 (1196)
....... +..|...+..++|+|||.+++ +++ .++.|++|+..++++.....++.+.+.+
T Consensus 130 ~~~~~~~--------------~~~~~~~v~~~~~~~~~~~l~-s~~------~d~~i~~~~~~~~~~~~~~~~~~~~v~~ 188 (337)
T d1gxra_ 130 TPRIKAE--------------LTSSAPACYALAISPDSKVCF-SCC------SDGNIAVWDLHNQTLVRQFQGHTDGASC 188 (337)
T ss_dssp --EEEEE--------------EECSSSCEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ccccccc--------------ccccccccccccccccccccc-ccc------cccccccccccccccccccccccccccc
Confidence 2111111 124456789999999999999 555 4689999999899999988889999999
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
++|+|+|+.+++++.+ ..|.+|+. +|.....+. +...|.+++|+|+++.|++++.|+ .|++|+...
T Consensus 189 l~~s~~~~~~~~~~~d------~~v~i~d~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~~~~d~---~i~i~d~~~ 255 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNK 255 (337)
T ss_dssp EEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTS
T ss_pred cccccccccccccccc------ccccccccccceeecccc----cccceEEEEEcccccccceecccc---ccccccccc
Confidence 9999999999999885 46999995 454433332 346799999999999999999999 899999987
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
...+ ....+......+.|+|++.. |..++.+|.+. .|+.. .|. ...
T Consensus 256 ~~~~---~~~~~~~~i~~v~~s~~g~~-l~s~s~Dg~i~----iwd~~----------~~~----------------~~~ 301 (337)
T d1gxra_ 256 PDKY---QLHLHESCVLSLKFAYCGKW-FVSTGKDNLLN----AWRTP----------YGA----------------SIF 301 (337)
T ss_dssp SCEE---EECCCSSCEEEEEECTTSSE-EEEEETTSEEE----EEETT----------TCC----------------EEE
T ss_pred cccc---cccccccccceEEECCCCCE-EEEEeCCCeEE----EEECC----------CCC----------------EEE
Confidence 6432 11222223388999998864 55655555543 23221 111 123
Q ss_pred eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 387 SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 387 ~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
++.|.+.|.+++|||++ ++||+++.||+|++|++
T Consensus 302 ~~~~~~~v~~~~~s~d~--~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 302 QSKESSSVLSCDISVDD--KYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECSSCEEEEEECTTS--CEEEEEETTSCEEEEEE
T ss_pred EccCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEE
Confidence 45678899999999999 89999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=4.7e-28 Score=279.03 Aligned_cols=312 Identities=12% Similarity=0.052 Sum_probs=210.8
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYE 152 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~ 152 (1196)
+.|++++|+|||+.||+++.||+|++||.++++.+ .+..|.++|.+++|||||++||+++.|++|++|+........
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~ 87 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence 46999999999999999999999999999887543 455678999999999999999999999999999743221111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE----EEEeccCCCceeEE
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL----QASSELKAFMGAVL 228 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l----~~~~e~~~~~v~sl 228 (1196)
. + .+.+|...+.+++|+|||++|+ +++ .+++|++|+.+.+.. .....++.+.+.++
T Consensus 88 ~-~------------~~~~~~~~v~~i~~~p~~~~l~-~~s------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v 147 (371)
T d1k8kc_ 88 T-L------------VILRINRAARCVRWAPNEKKFA-VGS------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSL 147 (371)
T ss_dssp E-E------------ECCCCSSCEEEEEECTTSSEEE-EEE------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred c-c------------ccccccccccccccccccccce-eec------ccCcceeeeeecccccccccccccccccccccc
Confidence 1 0 1124556789999999999999 665 468999998755432 33345688889999
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeE---------------EEEEec-cCCCCcEEEEEEccCCCeeEEEEc
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYERNGLER---------------SSFDIN-EQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~---------------~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
+|+|+|++||+++.|+ .|++|+...... ++.... ..+...|.+++|||||++||+++.
T Consensus 148 ~~~p~~~~l~s~s~D~------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 221 (371)
T d1k8kc_ 148 DWHPNSVLLAAGSCDF------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH 221 (371)
T ss_dssp EECTTSSEEEEEETTS------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccccccceeccccCc------EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc
Confidence 9999999999999864 599998542110 111111 123467999999999999999999
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEE--EcCCE--
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV--IDGSK-- 368 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v--iDg~~-- 368 (1196)
|+ +|++|+..+.. ..+++..+.....++.|+|++.. |.. ..++.+..+. |+.. ....... .+...
T Consensus 222 d~---~i~iwd~~~~~--~~~~~~~~~~~v~s~~fs~d~~~-la~-g~d~~~~~~~--~~~~--~~~~~~~~~~~~~~~~ 290 (371)
T d1k8kc_ 222 DS---TVCLADADKKM--AVATLASETLPLLAVTFITESSL-VAA-GHDCFPVLFT--YDSA--AGKLSFGGRLDVPKQS 290 (371)
T ss_dssp TT---EEEEEEGGGTT--EEEEEECSSCCEEEEEEEETTEE-EEE-ETTSSCEEEE--EETT--TTEEEECCCCCCC---
T ss_pred CC---cceEEeeeccc--ceeeeecccccceeeeecCCCCE-EEE-EcCCceEEEE--eeCC--CceEEEeeeecCcccc
Confidence 99 99999998753 23344443333488999998853 443 3356554433 2221 0000000 00000
Q ss_pred --EEEe------ec--c--ccCCCCCceeeeecCCCCEEEEEEecCCCC--CEEEEEECCCcEEEEeCCC
Q 000992 369 --ILVT------PL--S--LSLMPPPMYLFSLKFPTAVTEMAFYSKSSK--NCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 369 --l~lt------~l--~--~~~vpppm~~~~l~~~~~V~~Vafspdg~~--~~lAs~~~dg~v~lw~~~~ 424 (1196)
..+. .+ . ......+.....-.|.+.|++|+++|.+.. ..+|+++.||+|++|++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp -----CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 0000 00 0 000011111111238889999999987633 4699999999999999864
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=2.9e-27 Score=266.80 Aligned_cols=276 Identities=12% Similarity=0.122 Sum_probs=209.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
....++++++++.|++++++. |+.|++ .+... ..+ +.+| .+.|++++|+|||+.||+|+.||+|++
T Consensus 19 ~~~~~a~~~~g~~l~~~~~~~-v~i~~~--~~~~~-~~~------~~~H----~~~v~~~~~sp~g~~latg~~dg~i~i 84 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCNGTS-VYTVPV--GSLTD-TEI------YTEH----SHQTTVAKTSPSGYYCASGDVHGNVRI 84 (311)
T ss_dssp CCCCCEECTTSSEEEEEETTE-EEEEET--TCSSC-CEE------ECCC----SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCE-EEEEEC--CCCce-eEE------EcCC----CCCEEEEEEeCCCCeEeccccCceEee
Confidence 566789999999999987655 999998 44332 111 3344 358999999999999999999999999
Q ss_pred EECCCCe--E-EEeeeecCcEEEEEECCCCCEEEEEeCC--ceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 102 HSVDGNA--T-EVVGRVEGGVRFISPSPDGDLLGVTTGF--GQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 102 w~~~~~~--~-e~vg~~~~~I~~~awSPDg~~LA~~s~d--~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
||..++. . .....|.++|.+++|||||++|++++.+ ..+.+|. |+.- .... ++.+|.+.|
T Consensus 85 wd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~--~~~~--~~~~-----------~l~~h~~~v 149 (311)
T d1nr0a1 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL--FDTG--TSNG-----------NLTGQARAM 149 (311)
T ss_dssp EESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE--TTTC--CBCB-----------CCCCCSSCE
T ss_pred eeeeccccccccccccccCccccccccccccccccccccccccccccc--cccc--cccc-----------ccccccccc
Confidence 9998753 2 2345568899999999999999999864 4577775 2211 1111 233566788
Q ss_pred EEEEEccCCce-EEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKY-FATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~-lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.+++|+|||++ |+ +++ .|++|++||..+++.......|...+.+++|+|+|++||+++.|+ .|++|
T Consensus 150 ~~v~~~~~~~~~l~-sgs------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~------~v~~~ 216 (311)
T d1nr0a1 150 NSVDFKPSRPFRII-SGS------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG------TIVLY 216 (311)
T ss_dssp EEEEECSSSSCEEE-EEE------TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred ccccccccceeeec-ccc------cccccccccccccccccccccccccccccccCccccccccccccc------ccccc
Confidence 99999999997 55 454 468999999989999999999999999999999999999999864 69999
Q ss_pred eC-CCeeEEEEEec----cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCC---cEEEEE
Q 000992 256 ER-NGLERSSFDIN----EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRD---GIRFMW 327 (1196)
Q Consensus 256 e~-nGl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~---~~~v~W 327 (1196)
+. ++.....|... ..+...|.+++|||||++||+++.|+ +|+||+..+.. +.+++..+... ...+.|
T Consensus 217 d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg---~v~iwd~~t~~--~~~~l~~~~~~~~~~~~~~~ 291 (311)
T d1nr0a1 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK---TIKIWNVATLK--VEKTIPVGTRIEDQQLGIIW 291 (311)
T ss_dssp ETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTTE--EEEEEECCSSGGGCEEEEEE
T ss_pred ccccccccccccccccccccccccccccccCCCCCEEEEEeCCC---eEEEEECCCCc--EEEEEECCCCccceEEEEEe
Confidence 95 44444443222 11356799999999999999999999 99999998875 44566554321 155667
Q ss_pred ccCCCceEEEEecCCcEEEE
Q 000992 328 HPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 328 sp~~~~~L~~~~~~g~~~~~ 347 (1196)
+++ . |.+++.+|.+.++
T Consensus 292 ~~~--~-l~s~s~dG~i~~w 308 (311)
T d1nr0a1 292 TKQ--A-LVSISANGFINFV 308 (311)
T ss_dssp CSS--C-EEEEETTCCEEEE
T ss_pred cCC--E-EEEEECCCEEEEE
Confidence 654 2 6777778877643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.7e-26 Score=252.70 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=217.1
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|.+| .+.|++|+|+|+++.|++|+.||+|++||..++++ ..+..|.+.|.+++|+|+|..+++++.++++.+|..
T Consensus 13 L~GH----~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 13 LSGH----RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp EECC----SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred EcCC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 5666 46899999999999999999999999999988654 355557899999999999999999999999887753
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
....... .+.+|...+..+.|+|+|.+++ +++ .++.+++||..+|+...++.++...+
T Consensus 89 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-~~~------~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 89 QGFECIR---------------TMHGHDHNVSSVSIMPNGDHIV-SAS------RDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp TSSCEEE---------------CCCCCSSCEEEEEECSSSSEEE-EEE------TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ccccccc---------------ccccccccceeeeccCCCceEE-eec------cCcceeEeecccceeeeEEccCCCcc
Confidence 3221111 1224556789999999999999 554 47899999998999999999999999
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEEEEeccCCCCcEEEEEEccCCC-------------------
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSSFDINEQIDSTVELLKWNCMSD------------------- 285 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~f~l~~~~~~~V~~laWSpDg~------------------- 285 (1196)
..++|+|+|++||+++.++ .|++|+.+. .... .+.. +...|..++|+|++.
T Consensus 147 ~~~~~~~~~~~l~~~~~d~------~v~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (317)
T d1vyhc1 147 RMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKA--ELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPG 217 (317)
T ss_dssp EEEEECTTSSEEEEEETTS------CEEEEETTTCCEEE--EECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred eeeecccCCCEEEEEeCCC------eEEEEeeccceeeE--EEec-CCCCceEEEEeeccccceeeccccceeeeeccCC
Confidence 9999999999999999864 599998643 2222 2332 345688899988754
Q ss_pred -eeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEE
Q 000992 286 -LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVI 364 (1196)
Q Consensus 286 -~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~vi 364 (1196)
.+++++.|+ +|++|+..+... ...+..+......+.|+|++.. |..+..+|.+
T Consensus 218 ~~~~~~~~d~---~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i-------------------- 271 (317)
T d1vyhc1 218 PFLLSGSRDK---TIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTL-------------------- 271 (317)
T ss_dssp CEEEEEETTS---EEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSC-EEEEETTTEE--------------------
T ss_pred ceeEeccCCC---EEEEEECCCCcE--EEEEeCCCCCEEEEEECCCCCE-EEEEECCCeE--------------------
Confidence 688899998 999999988753 3445444444478899998765 5555555544
Q ss_pred cCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 365 DGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 365 Dg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
++|++.... ...++ .|.+.|++++|+|++ +.||+++.||+|++|+
T Consensus 272 -----~iwd~~~~~-----~~~~~~~h~~~V~~~~~s~~~--~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 272 -----RVWDYKNKR-----CMKTLNAHEHFVTSLDFHKTA--PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp -----EEECCTTSC-----CCEEEECCSSCEEEEEECSSS--SCEEEEETTSEEEEEC
T ss_pred -----EEEECCCCc-----EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEeC
Confidence 344332211 11334 378899999999999 8999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=6e-26 Score=259.66 Aligned_cols=283 Identities=13% Similarity=0.077 Sum_probs=196.5
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Ee------------------eeecCcEEEEEECCCCCEEEEEe
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VV------------------GRVEGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~v------------------g~~~~~I~~~awSPDg~~LA~~s 135 (1196)
.+.|++++|||||+.||+|+ ||+|+|||..+++.. .. ..++..|.+++|||||++||+++
T Consensus 62 ~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp SSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 46899999999999999986 899999999765431 11 13466799999999999999999
Q ss_pred CCceEEEEeccC-ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcE
Q 000992 136 GFGQILVMTHDW-DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTL 214 (1196)
Q Consensus 136 ~d~tV~l~~~~~-d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l 214 (1196)
.||+|++|+... ..+.. +.+|...+.+++|++++..++ +++ .++.+++||..++..
T Consensus 141 ~dg~v~i~~~~~~~~~~~----------------~~~h~~~v~~~~~~~~~~~~~-~~~------~~~~i~~~d~~~~~~ 197 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMI----------------LQGHEQDIYSLDYFPSGDKLV-SGS------GDRTVRIWDLRTGQC 197 (388)
T ss_dssp TTSCEEEEETTTTEEEEE----------------ECCCSSCEEEEEECTTSSEEE-EEE------TTSEEEEEETTTTEE
T ss_pred cccccccccccccccccc----------------ccccccccccccccccccccc-ccc------cceeeeeeecccccc
Confidence 999999987432 21111 124667889999999999998 565 468999999977777
Q ss_pred EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec----cCCCCcEEEEEEccCCCeeEE
Q 000992 215 QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN----EQIDSTVELLKWNCMSDLLAA 289 (1196)
Q Consensus 215 ~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~----~~~~~~V~~laWSpDg~~LAs 289 (1196)
......+...+....+.++|++||+++.++ .|.+|+.. |.....+... ..+...|.+++|+|||++||+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 271 (388)
T d1erja_ 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271 (388)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred ccccccccccccccccCCCCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence 776665555544444555899999999864 59999853 4433332211 123567999999999999999
Q ss_pred EEccCCcceEEEEEecCCEEEEE----------EEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCe
Q 000992 290 VVRFEEYDSVKICFFSNNHWYLK----------YEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENS 359 (1196)
Q Consensus 290 ~~~d~~~~~V~lW~~~n~~wylk----------q~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~ 359 (1196)
++.|+ .|++|++.+...... .....+......+.|+|++.. |.+++.+|.
T Consensus 272 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~sg~~dg~---------------- 331 (388)
T d1erja_ 272 GSLDR---SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGSKDRG---------------- 331 (388)
T ss_dssp EETTS---EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCE-EEEEETTSE----------------
T ss_pred EECCC---cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCE-EEEEeCCCE----------------
Confidence 99999 999999876432110 011111112256677776653 455554444
Q ss_pred eEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEE------ecCCCCCEEEEEECCCcEEEEeCC
Q 000992 360 TALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAF------YSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 360 ~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vaf------spdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
|++|+++.. ....++ .|.+.|.++++ +|++ ++||+++.||+|++|++.
T Consensus 332 ---------i~vwd~~~~-----~~~~~l~~H~~~V~~~~~~~~~~~spd~--~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 332 ---------VLFWDKKSG-----NPLLMLQGHRNSVISVAVANGSSLGPEY--NVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ---------EEEEETTTC-----CEEEEEECCSSCEEEEEECSSCTTCTTC--EEEEEEETTSEEEEEEEE
T ss_pred ---------EEEEECCCC-----cEEEEEeCCCCCEEEEEEecCcccCCCC--CEEEEEeCCCEEEEEeee
Confidence 444433211 112334 37888988874 6788 899999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=1e-26 Score=262.18 Aligned_cols=285 Identities=13% Similarity=0.127 Sum_probs=204.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccC-ceeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDW-DLLYE 152 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~-d~~~~ 152 (1196)
.+.+..++++|+|+.|+.++ ++.|.+|+.++... .+...|.+.|.+++|||||++||+++.||+|++|+..- .....
T Consensus 17 r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp TTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence 45677899999999999885 66799999987543 45555789999999999999999999999999996321 11111
Q ss_pred eecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcC
Q 000992 153 NPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMP 232 (1196)
Q Consensus 153 ~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsP 232 (1196)
. .+..|...|.+++|+|||++|+ +++. ..++.++||+.++++...++.+|...+.+++|+|
T Consensus 96 ~--------------~~~~~~~~v~~v~~s~d~~~l~-~~~~----~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~ 156 (311)
T d1nr0a1 96 T--------------TIPVFSGPVKDISWDSESKRIA-AVGE----GRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156 (311)
T ss_dssp E--------------EEECSSSCEEEEEECTTSCEEE-EEEC----CSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS
T ss_pred c--------------ccccccCccccccccccccccc-cccc----cccccccccccccccccccccccccccccccccc
Confidence 1 1235667889999999999999 4542 2467899999999999999999999999999999
Q ss_pred CCCe-EEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 233 SGAN-IAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 233 dG~~-IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
+|++ ||+++.|+ .|++|+....... ..+. .+...|.+++|+|||++||+++.|+ .|++|+..+...
T Consensus 157 ~~~~~l~sgs~d~------~i~i~d~~~~~~~-~~~~-~~~~~i~~v~~~p~~~~l~~~~~d~---~v~~~d~~~~~~-- 223 (311)
T d1nr0a1 157 SRPFRIISGSDDN------TVAIFEGPPFKFK-STFG-EHTKFVHSVRYNPDGSLFASTGGDG---TIVLYNGVDGTK-- 223 (311)
T ss_dssp SSSCEEEEEETTS------CEEEEETTTBEEE-EEEC-CCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE--
T ss_pred cceeeeccccccc------ccccccccccccc-cccc-cccccccccccCccccccccccccc---cccccccccccc--
Confidence 9985 78888764 5999996643322 1222 3456799999999999999999999 899999876532
Q ss_pred EEEEEE-------ecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCce
Q 000992 312 KYEIRY-------LRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMY 384 (1196)
Q Consensus 312 kq~l~~-------~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~ 384 (1196)
...+.. |......+.|+|++.. |..++.||.+. +|++. .|+.++..+...
T Consensus 224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-l~tgs~Dg~v~----iwd~~----------t~~~~~~l~~~~-------- 280 (311)
T d1nr0a1 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIK----IWNVA----------TLKVEKTIPVGT-------- 280 (311)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEE----EEETT----------TTEEEEEEECCS--------
T ss_pred cccccccccccccccccccccccCCCCCE-EEEEeCCCeEE----EEECC----------CCcEEEEEECCC--------
Confidence 222221 1122378899998864 66666666553 34332 121111111100
Q ss_pred eeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 385 LFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 385 ~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
.+...+.++.| ++ +.|++++.||.|++|+.+
T Consensus 281 ----~~~~~~~~~~~--~~--~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 281 ----RIEDQQLGIIW--TK--QALVSISANGFINFVNPE 311 (311)
T ss_dssp ----SGGGCEEEEEE--CS--SCEEEEETTCCEEEEETT
T ss_pred ----CccceEEEEEe--cC--CEEEEEECCCEEEEEeCC
Confidence 01223445554 45 578999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.4e-26 Score=260.79 Aligned_cols=332 Identities=12% Similarity=0.080 Sum_probs=224.2
Q ss_pred EEECCCcEEEEECCCCe---E---EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeeccccc--Ccc
Q 000992 92 VGTSSGLLLLHSVDGNA---T---EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELA--EGF 162 (1196)
Q Consensus 92 ~as~dG~I~lw~~~~~~---~---e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~--~~~ 162 (1196)
....++.+.+|+..... . ...+ |.+.|+|++|||||++||+|+ |++|++|+ .+...+.....+... ...
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEE-CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCC-CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccc
Confidence 45678889999976432 1 2334 689999999999999999986 89999997 334444333322211 111
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEec
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+.......|+..|.+++|+|||++|| +++ .|++|++||..+++......+|.+.+.+++|+|+|..+++++.
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s~~~~~l~-s~~------~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 183 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFSPDGKFLA-TGA------EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183 (388)
T ss_dssp --------CCCCBEEEEEECTTSSEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccCCCCCEEEEEECCCCCcce-ecc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 111223346788899999999999999 565 4689999999999999999999999999999999999999987
Q ss_pred CCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEE-ccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEE-----
Q 000992 243 RKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKW-NCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIR----- 316 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laW-SpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~----- 316 (1196)
+ ..|++|+........ ... . ......+.| ++|+++||+++.|+ .|++|+..+.....+....
T Consensus 184 ~------~~i~~~d~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~l~~~~~d~---~i~i~~~~~~~~~~~~~~~~~~~~ 251 (388)
T d1erja_ 184 D------RTVRIWDLRTGQCSL-TLS-I-EDGVTTVAVSPGDGKYIAAGSLDR---AVRVWDSETGFLVERLDSENESGT 251 (388)
T ss_dssp T------SEEEEEETTTTEEEE-EEE-C-SSCEEEEEECSTTCCEEEEEETTS---CEEEEETTTCCEEEEEC------C
T ss_pred c------eeeeeeecccccccc-ccc-c-ccccccccccCCCCCeEEEEcCCC---eEEEeecccCccceeecccccccc
Confidence 5 479999966443221 111 2 223444555 55899999999999 8999999875532111111
Q ss_pred EecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEE
Q 000992 317 YLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE 396 (1196)
Q Consensus 317 ~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~ 396 (1196)
.+......+.|+|++.. |.+++.+|.+.. |++.. +.... .... ............|...|.+
T Consensus 252 ~h~~~v~~l~~s~~~~~-l~s~~~d~~i~i----wd~~~----------~~~~~--~~~~-~~~~~~~~~~~~~~~~v~~ 313 (388)
T d1erja_ 252 GHKDSVYSVVFTRDGQS-VVSGSLDRSVKL----WNLQN----------ANNKS--DSKT-PNSGTCEVTYIGHKDFVLS 313 (388)
T ss_dssp CCSSCEEEEEECTTSSE-EEEEETTSEEEE----EEC----------------------------CEEEEEECCSSCEEE
T ss_pred CCCCCEEEEEECCCCCE-EEEEECCCcEEE----EeccC----------Ccccc--cccc-ccccceeeecccccceEEE
Confidence 11122378999998864 677777787654 33320 00000 0000 0000111122347889999
Q ss_pred EEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEE------EecCCeEEEEEecCCC
Q 000992 397 MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLI------WLGSHLLLSVSHHGPR 470 (1196)
Q Consensus 397 Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~------~~~d~~lla~~~~~~~ 470 (1196)
++|+|++ +.|++++.||+|++|+..+..+...+.|| .+.|.+++ |+|++.+||+++.+
T Consensus 314 ~~~s~~~--~~l~sg~~dg~i~vwd~~~~~~~~~l~~H------------~~~V~~~~~~~~~~~spd~~~l~s~s~D-- 377 (388)
T d1erja_ 314 VATTQND--EYILSGSKDRGVLFWDKKSGNPLLMLQGH------------RNSVISVAVANGSSLGPEYNVFATGSGD-- 377 (388)
T ss_dssp EEECGGG--CEEEEEETTSEEEEEETTTCCEEEEEECC------------SSCEEEEEECSSCTTCTTCEEEEEEETT--
T ss_pred EEECCCC--CEEEEEeCCCEEEEEECCCCcEEEEEeCC------------CCCEEEEEEecCcccCCCCCEEEEEeCC--
Confidence 9999999 89999999999999999876665455543 34566665 56799999998876
Q ss_pred CceEEEEe
Q 000992 471 HSNYFRGA 478 (1196)
Q Consensus 471 ~~~~~~~~ 478 (1196)
.++.+|++
T Consensus 378 g~I~iW~~ 385 (388)
T d1erja_ 378 CKARIWKY 385 (388)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEee
Confidence 68999987
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.3e-25 Score=254.46 Aligned_cols=280 Identities=13% Similarity=0.131 Sum_probs=212.1
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++++..|++++ |+.|..||++ .......+..+. ..+| .+.|.+++|+|||+.|++++.||+|++
T Consensus 53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~--~~~~~~~~~~~~--~~~h----~~~I~~v~~s~dg~~l~s~~~dg~i~i 123 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG-KGCVKVWDIS--HPGNKSPVSQLD--CLNR----DNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETT--STTCCSCSEEEE--CSCT----TSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred cEEEEEECCCCCEEEEEE-CCEEEEEEcc--CCcccceeEEee--ecCC----CCcEEEEEEcCCCCEEEEeeccccccc
Confidence 788899999999999988 5679999983 322211111100 1112 367999999999999999999999999
Q ss_pred EECCCC--eEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDGN--ATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~~--~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
||.... ++. ....|...|.+++|+||+..|++++.|++|.+|+. ........ .+|.+.+.
T Consensus 124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~----------------~~~~~~v~ 187 (337)
T d1gxra_ 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF----------------QGHTDGAS 187 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE----------------CCCSSCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------cccccccc
Confidence 998753 332 34456788999999999999999999999999863 22222111 13456789
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+++|+++|++++ +++ .++.+++||..+|+...... +.+.+.+++|+|+|++|++++.++ .|.+|+.
T Consensus 188 ~l~~s~~~~~~~-~~~------~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~------~i~i~d~ 253 (337)
T d1gxra_ 188 CIDISNDGTKLW-TGG------LDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS------NVEVLHV 253 (337)
T ss_dssp EEEECTTSSEEE-EEE------TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS------CEEEEET
T ss_pred cccccccccccc-ccc------ccccccccccccceeecccc-cccceEEEEEcccccccceecccc------ccccccc
Confidence 999999999999 665 46899999998998887765 677899999999999999998864 6999997
Q ss_pred CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEE
Q 000992 258 NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLIC 337 (1196)
Q Consensus 258 nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~ 337 (1196)
+.... +... .+...|.+++|+|||++|++++.|+ +|++|+..+..-. ..+. +......+.|+|++.. |.+
T Consensus 254 ~~~~~--~~~~-~~~~~i~~v~~s~~g~~l~s~s~Dg---~i~iwd~~~~~~~--~~~~-~~~~v~~~~~s~d~~~-l~t 323 (337)
T d1gxra_ 254 NKPDK--YQLH-LHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGASI--FQSK-ESSSVLSCDISVDDKY-IVT 323 (337)
T ss_dssp TSSCE--EEEC-CCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEE--EEEE-CSSCEEEEEECTTSCE-EEE
T ss_pred ccccc--cccc-ccccccceEEECCCCCEEEEEeCCC---eEEEEECCCCCEE--EEcc-CCCCEEEEEEeCCCCE-EEE
Confidence 64332 2222 2456799999999999999999999 9999999876421 2221 2233488999998865 777
Q ss_pred EecCCcEEEEEEE
Q 000992 338 WTLDGQITTYNFI 350 (1196)
Q Consensus 338 ~~~~g~~~~~~~~ 350 (1196)
++.||.+.+++..
T Consensus 324 ~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 324 GSGDKKATVYEVI 336 (337)
T ss_dssp EETTSCEEEEEEE
T ss_pred EeCCCeEEEEEEE
Confidence 8888888766543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.1e-25 Score=248.30 Aligned_cols=285 Identities=11% Similarity=0.060 Sum_probs=208.9
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|.+| .+.|++++|+||++.||+|+.||+|++||..+++. ..+..|.+.|.+++|+|||++|++++.|+++.+|..
T Consensus 51 L~GH----~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 51 LRGH----LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp ECCC----SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred ECCC----CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 5666 46899999999999999999999999999998765 355567899999999999999999999999999875
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
............ +.+|........+.+++.... .. .+...+.|.................+
T Consensus 127 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (340)
T d1tbga_ 127 KTREGNVRVSRE-----------LAGHTGYLSCCRFLDDNQIVT--SS------GDTTCALWDIETGQQTTTFTGHTGDV 187 (340)
T ss_dssp SSSCSCCCEEEE-----------ECCCSSCEEEEEEEETTEEEE--EE------TTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred ccccccccccee-----------ccccccccccccccccccccc--cc------ccccccccccccccccccccccceeE
Confidence 433222111111 113344455566666554444 32 35788888886666666666677788
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
....+.|.+.++++++.+ ..|.+|+. +|.... .+.. +...|.+|+|+|||++||+++.|+ +|++|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~d------~~v~i~d~~~~~~~~--~~~~-h~~~i~~v~~~p~~~~l~s~s~d~---~i~~~~~ 255 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQ--TFTG-HESDINAICFFPNGNAFATGSDDA---TCRLFDL 255 (340)
T ss_dssp EEEEECTTSSEEEEEETT------TEEEEEETTTTEEEE--EECC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEET
T ss_pred eeeccccccceeEEeecC------ceEEEEECCCCcEEE--EEeC-CCCCeEEEEECCCCCEEEEEeCCC---eEEEEee
Confidence 999999999999999886 47999995 444333 2333 356899999999999999999999 9999999
Q ss_pred cCCEEEEEEEEEEec--CCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCC
Q 000992 305 SNNHWYLKYEIRYLR--RDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPP 382 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~--~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vppp 382 (1196)
.+..... .+.... .....+.|+|++.. |.+++.+|.+.+ |++. .++.
T Consensus 256 ~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~-l~~g~~dg~i~i----wd~~----------~~~~-------------- 304 (340)
T d1tbga_ 256 RADQELM--TYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNV----WDAL----------KADR-------------- 304 (340)
T ss_dssp TTTEEEE--EECCTTCCSCEEEEEECSSSCE-EEEEETTSCEEE----EETT----------TCCE--------------
T ss_pred ccccccc--ccccccccCceEEEEECCCCCE-EEEEECCCEEEE----EECC----------CCcE--------------
Confidence 8765321 121111 12377899998764 666666666542 3321 1111
Q ss_pred ceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 383 MYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 383 m~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
..++ .|.++|++|+|+|++ +.||+++.||+|++|+
T Consensus 305 --~~~~~~H~~~V~~l~~s~d~--~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 305 --AGVLAGHDNRVSCLGVTDDG--MAVATGSWDSFLKIWN 340 (340)
T ss_dssp --EEEECCCSSCEEEEEECTTS--SCEEEEETTSCEEEEC
T ss_pred --EEEEcCCCCCEEEEEEeCCC--CEEEEEccCCEEEEeC
Confidence 1233 378899999999999 8999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=5.5e-26 Score=251.29 Aligned_cols=288 Identities=13% Similarity=0.114 Sum_probs=196.6
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Ee-eeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VV-GRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~v-g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
+.+| .+.|++++|+|||+.|++|+.||+|++||..+++.. .. +.|.+.|.+++|+|||+++ +++.|+++++|.
T Consensus 8 ~~GH----~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~~d~~v~~~~ 82 (299)
T d1nr0a2 8 RYGH----NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVSWDDHLKVVP 82 (299)
T ss_dssp ECCC----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEETTTEEEEEC
T ss_pred cCCC----CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-cccceeeEEEec
Confidence 4556 368999999999999999999999999999887654 33 4578899999999999755 566789999986
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCc
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFM 224 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~ 224 (1196)
........... ....+...+..++|+|||++++ +++ ++.+++|+. ++..... ....
T Consensus 83 ~~~~~~~~~~~------------~~~~~~~~~~~~~~s~~g~~~~-~~~-------~~~i~~~~~--~~~~~~~--~~~~ 138 (299)
T d1nr0a2 83 AGGSGVDSSKA------------VANKLSSQPLGLAVSADGDIAV-AAC-------YKHIAIYSH--GKLTEVP--ISYN 138 (299)
T ss_dssp SSSSSSCTTSC------------CEEECSSCEEEEEECTTSSCEE-EEE-------SSEEEEEET--TEEEEEE--CSSC
T ss_pred cCCcccccccc------------cccccccccccccccccccccc-ccc-------ccccccccc--ccccccc--cccc
Confidence 43221110000 0112345678999999999888 554 478999996 2333322 3445
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
...++|+|+|++||+++.+ ..|.+|+..+.......... +...|.+++|+|++++|++++.++ .|++|+.
T Consensus 139 ~~~~~~s~~~~~l~~g~~d------g~i~~~d~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~~~ 208 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQD------SKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSR---KVIPYSV 208 (299)
T ss_dssp EEEEEECTTSCEEEEEETT------SEEEEEEEETTEEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS---CEEEEEG
T ss_pred ccccccccccccccccccc------cccccccccccccccccccc-cccccccccccccccccccccccc---ccccccc
Confidence 6899999999999999885 47999996543332222222 356799999999999999999999 8999998
Q ss_pred cCCEEE-EEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCc
Q 000992 305 SNNHWY-LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPM 383 (1196)
Q Consensus 305 ~n~~wy-lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm 383 (1196)
.+.... ....+..+......+.|+|++.. |.+++.||.+. +|++..... .+.
T Consensus 209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~sgs~dg~i~-------------------------iwd~~~~~~-~~~ 261 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVR-LATGSLDNSVI-------------------------VWNMNKPSD-HPI 261 (299)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSE-EEEEETTSCEE-------------------------EEETTCTTS-CCE
T ss_pred cccccccccccccccccccccccccccccc-eEEEcCCCEEE-------------------------EEECCCCCc-ceE
Confidence 764321 11222233333478899998865 56665555543 333322111 011
Q ss_pred eeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCC
Q 000992 384 YLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLP 423 (1196)
Q Consensus 384 ~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~ 423 (1196)
......+...|..++|. ++ +.|++++.||+|++|+++
T Consensus 262 ~~~~~~~~~~v~~~~~~-~~--~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 262 IIKGAHAMSSVNSVIWL-NE--TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EETTSSTTSCEEEEEEE-ET--TEEEEEETTSCEEEEECC
T ss_pred EEecCCCCCcEEEEEEC-CC--CEEEEEeCCCEEEEEecc
Confidence 11111134556777655 45 699999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=7.5e-26 Score=247.57 Aligned_cols=312 Identities=15% Similarity=0.098 Sum_probs=224.5
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPI 179 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~i 179 (1196)
.|.+...+...+.+|.+.|++++|||||++||+++.||+|++|+. .++.+.. |.+|.+.|.++
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~----------------~~~h~~~V~~~ 65 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----------------LKGHTDSVQDI 65 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE----------------ECCCSSCEEEE
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE----------------EeCCCCcEEEE
Confidence 355544322233447899999999999999999999999999962 3333222 23566789999
Q ss_pred EEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 180 SWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 180 sWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
+|+|+|.+++ .+. .++++.+|+...++......++...+.++.|+|+|+.+++++.| ..+.+|+..
T Consensus 66 ~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~~~~~~~~~ 132 (317)
T d1vyhc1 66 SFDHSGKLLA-SCS------ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQT 132 (317)
T ss_dssp EECTTSSEEE-EEE------TTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTT
T ss_pred eeeccccccc-ccc------cccccccccccccccccccccccccceeeeccCCCceEEeeccC------cceeEeeccc
Confidence 9999999999 554 35788999987888888888889999999999999999999986 469999854
Q ss_pred CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEE
Q 000992 259 GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 259 Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
|..... +.. +...+..++|+||+++||+++.|+ .|++|+..+... ...+..+......+.|+|++... .+.
T Consensus 133 ~~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~~~d~---~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~~ 203 (317)
T d1vyhc1 133 GYCVKT--FTG-HREWVRMVRPNQDGTLIASCSNDQ---TVRVWVVATKEC--KAELREHRHVVECISWAPESSYS-SIS 203 (317)
T ss_dssp CCEEEE--EEC-CSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGG-GGG
T ss_pred ceeeeE--Ecc-CCCcceeeecccCCCEEEEEeCCC---eEEEEeecccee--eEEEecCCCCceEEEEeeccccc-eee
Confidence 433332 332 345799999999999999999999 999999987653 23343333334788999987541 111
Q ss_pred ecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcE
Q 000992 339 TLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCL 417 (1196)
Q Consensus 339 ~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v 417 (1196)
...+..... . ...+..+++...++.+++|+++.. .+..++ .|...|.+++|+|++ +.||+++.||+|
T Consensus 204 ~~~~~~~~~----~-~~~~~~~~~~~~d~~i~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i 271 (317)
T d1vyhc1 204 EATGSETKK----S-GKPGPFLLSGSRDKTIKMWDVSTG-----MCLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTL 271 (317)
T ss_dssp GCCSCC------------CCEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEECSSS--SCEEEEETTTEE
T ss_pred ccccceeee----e-ccCCceeEeccCCCEEEEEECCCC-----cEEEEEeCCCCCEEEEEECCCC--CEEEEEECCCeE
Confidence 111111100 0 011223344455667888877532 233445 488899999999999 899999999999
Q ss_pred EEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEE
Q 000992 418 CVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFR 476 (1196)
Q Consensus 418 ~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~ 476 (1196)
++|++.+......+.+ |.+.|..++|+|++.+|++++.+ .++.+|
T Consensus 272 ~iwd~~~~~~~~~~~~------------h~~~V~~~~~s~~~~~l~s~s~D--g~i~iW 316 (317)
T d1vyhc1 272 RVWDYKNKRCMKTLNA------------HEHFVTSLDFHKTAPYVVTGSVD--QTVKVW 316 (317)
T ss_dssp EEECCTTSCCCEEEEC------------CSSCEEEEEECSSSSCEEEEETT--SEEEEE
T ss_pred EEEECCCCcEEEEEcC------------CCCCEEEEEEcCCCCEEEEEeCC--CeEEEe
Confidence 9999987655544443 34679999999999999998875 567776
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=9.1e-26 Score=259.75 Aligned_cols=244 Identities=10% Similarity=0.114 Sum_probs=186.7
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
++.+++|++++..|++++.++.|..|+. .+++.. .+.+ +.+| .+.|.+++|+|+++.|++++.||+|++
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~--~~~~~~-~~~~----l~gH----~~~V~~l~fsp~~~~l~s~s~D~~i~v 77 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEK--SGNKWV-QVHE----LKEH----NGQVTGVDWAPDSNRIVTCGTDRNAYV 77 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEE--ETTEEE-EEEE----EECC----SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEC--CCCCEE-EEEE----ecCC----CCCEEEEEECCCCCEEEEEECCCeEEE
Confidence 7899999999999999999999999998 444321 1222 4555 368999999999999999999999999
Q ss_pred EECCCCeEE---EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEE
Q 000992 102 HSVDGNATE---VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 102 w~~~~~~~e---~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~ 178 (1196)
||.+++..+ ....|...|.+++|+|||+.|++++.|++|.+|............. ...+|.+.+.+
T Consensus 78 Wd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~-----------~~~~~~~~v~~ 146 (371)
T d1k8kc_ 78 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH-----------IKKPIRSTVLS 146 (371)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE-----------ECTTCCSCEEE
T ss_pred EeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccc-----------ccccccccccc
Confidence 999876543 3345678899999999999999999999999986332111111111 11245678899
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCC------------------CcEEEEeccCCCceeEEEEcCCCCeEEEE
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS------------------GTLQASSELKAFMGAVLEWMPSGANIAAV 240 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~------------------G~l~~~~e~~~~~v~slawsPdG~~IAs~ 240 (1196)
++|+|||++|| +++ .|++|+||+... +++......|.+.+.+++|+|+|++||++
T Consensus 147 v~~~p~~~~l~-s~s------~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 219 (371)
T d1k8kc_ 147 LDWHPNSVLLA-AGS------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219 (371)
T ss_dssp EEECTTSSEEE-EEE------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred cccccccccee-ccc------cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence 99999999999 565 468999999743 34566667788899999999999999999
Q ss_pred ecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 241 YDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 241 s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
+.| ..|.+|+.+ +..... +.. +...|.+++|+|||++||+|..+. +++|...+.
T Consensus 220 ~~d------~~i~iwd~~~~~~~~~--~~~-~~~~v~s~~fs~d~~~la~g~d~~----~~~~~~~~~ 274 (371)
T d1k8kc_ 220 SHD------STVCLADADKKMAVAT--LAS-ETLPLLAVTFITESSLVAAGHDCF----PVLFTYDSA 274 (371)
T ss_dssp ETT------TEEEEEEGGGTTEEEE--EEC-SSCCEEEEEEEETTEEEEEETTSS----CEEEEEETT
T ss_pred ccC------CcceEEeeecccceee--eec-ccccceeeeecCCCCEEEEEcCCc----eEEEEeeCC
Confidence 986 479999954 333332 332 345799999999999999876543 777766543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=4.7e-24 Score=235.55 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=194.5
Q ss_pred EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceE
Q 000992 110 EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYF 188 (1196)
Q Consensus 110 e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~l 188 (1196)
.+.-+|.++|++++|||||++||+++.||+|++|+. .+..+.. . ..+|...|.+++|+|||+++
T Consensus 6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~-----~----------~~~h~~~v~~v~~~~~g~~~ 70 (299)
T d1nr0a2 6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV-----F----------PDVHATMITGIKTTSKGDLF 70 (299)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC-----S----------SCSCSSCEEEEEECTTSCEE
T ss_pred eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE-----E----------cCCCCCcEEEEEeeccceee
Confidence 455557999999999999999999999999999863 2222211 1 01456778999999999988
Q ss_pred EEeeccccccCCCCEEEEEECCCCcEE---EEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEE
Q 000992 189 ATLSEFCNSSKLHKRLKVWERDSGTLQ---ASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSF 265 (1196)
Q Consensus 189 Asvss~d~~~~~d~~irVWd~~~G~l~---~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f 265 (1196)
+ +++ |+++++|+....... .....+...+..++|+|+|+++++++.+ .+.+|+... ..
T Consensus 71 ~-~~~-------d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~-------~i~~~~~~~-~~--- 131 (299)
T d1nr0a2 71 T-VSW-------DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK-------HIAIYSHGK-LT--- 131 (299)
T ss_dssp E-EET-------TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESS-------EEEEEETTE-EE---
T ss_pred c-ccc-------eeeEEEeccCCccccccccccccccccccccccccccccccccccc-------ccccccccc-cc---
Confidence 7 553 689999997332211 1122356677899999999999888763 688998542 11
Q ss_pred EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 266 DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
.+. ....+..++|+||+++||+++.|+ .|++|++.+...... ....+......+.|+|++.. |.+++.+|.+.
T Consensus 132 ~~~--~~~~~~~~~~s~~~~~l~~g~~dg---~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~ 204 (299)
T d1nr0a2 132 EVP--ISYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGAF-LVATDQSRKVI 204 (299)
T ss_dssp EEE--CSSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTEEEEE-EEEECSSCEEEEEECTTSSE-EEEEETTSCEE
T ss_pred ccc--cccccccccccccccccccccccc---ccccccccccccccc-cccccccccccccccccccc-ccccccccccc
Confidence 112 234578999999999999999999 999999987653211 11222333488999998865 66666666553
Q ss_pred EEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCC
Q 000992 346 TYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPA 424 (1196)
Q Consensus 346 ~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~ 424 (1196)
.|+.. ++..+. ....+ .|..+|.+++|+|++ +.||+++.||+|++|++.+
T Consensus 205 ----~~~~~----------~~~~~~-------------~~~~~~~h~~~v~~l~~s~~~--~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 205 ----PYSVA----------NNFELA-------------HTNSWTFHTAKVACVSWSPDN--VRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp ----EEEGG----------GTTEES-------------CCCCCCCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTC
T ss_pred ----ccccc----------cccccc-------------ccccccccccccccccccccc--cceEEEcCCCEEEEEECCC
Confidence 33321 111110 00112 367899999999999 8999999999999999876
Q ss_pred CCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 425 PDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 425 ~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
........ ....+...+..+.|.+++ +|++++.+ ..+.+|++.
T Consensus 256 ~~~~~~~~---------~~~~~~~~v~~~~~~~~~-~l~s~s~D--~~i~iWdl~ 298 (299)
T d1nr0a2 256 PSDHPIII---------KGAHAMSSVNSVIWLNET-TIVSAGQD--SNIKFWNVP 298 (299)
T ss_dssp TTSCCEEE---------TTSSTTSCEEEEEEEETT-EEEEEETT--SCEEEEECC
T ss_pred CCcceEEE---------ecCCCCCcEEEEEECCCC-EEEEEeCC--CEEEEEecc
Confidence 43221110 001122356666665554 56666655 689999873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=4.1e-24 Score=240.57 Aligned_cols=306 Identities=10% Similarity=0.012 Sum_probs=202.6
Q ss_pred EEEcc-CCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCc--eEEEEeccCceeeeeeccc
Q 000992 81 FDYLM-EKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG--QILVMTHDWDLLYENPLEE 157 (1196)
Q Consensus 81 v~~sp-d~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~--tV~l~~~~~d~~~~~~l~~ 157 (1196)
-.||| ||+.+|+++ +|+|.+||..++.+..++ |.+.|.+++|||||+.|++++.++ +|.+|+.......
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~------ 79 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE------ 79 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE------
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE------
Confidence 45999 999999986 589999999998887777 588999999999999999987654 6777764322211
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeE
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANI 237 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~I 237 (1196)
++.+|...+..++|+|||++|+ +++ .++.+++|+..++++......+...+.+++|+|||++|
T Consensus 80 ----------~~~~~~~~v~~~~~spdg~~l~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 142 (360)
T d1k32a3 80 ----------KFEENLGNVFAMGVDRNGKFAV-VAN------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFI 142 (360)
T ss_dssp ----------ECCCCCCSEEEEEECTTSSEEE-EEE------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEE
T ss_pred ----------EeeCCCceEEeeeecccccccc-eec------cccccccccccccceeeeeecccccccchhhccceeee
Confidence 1224567789999999999999 554 46899999999999988888888889999999999999
Q ss_pred EEEecCCC----CCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE-
Q 000992 238 AAVYDRKS----ENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK- 312 (1196)
Q Consensus 238 As~s~d~~----~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk- 312 (1196)
|.++.+.+ ......+.+|+..+.... .+. .+...+..++|||||+.||+++.++ .+.+|+.....+...
T Consensus 143 a~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~-~~~~~~~~~~~spdg~~l~~~s~~~---~~~~~d~~~~~~~~~~ 216 (360)
T d1k32a3 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIF--AAT-TENSHDYAPAFDADSKNLYYLSYRS---LDPSPDRVVLNFSFEV 216 (360)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTEEE--ECS-CSSSBEEEEEECTTSCEEEEEESCC---CCCEECSSSSCEECCS
T ss_pred eeeccccccceeeccccceeeeccccCcee--eec-ccccccccccccCCCCEEEEEeCCC---ceEcccccccceeecc
Confidence 98765432 122356888987654332 222 2345688999999999999999988 899998765432110
Q ss_pred ----EEEEEecCCcEEEEEccCCCc-------------eEEEEe-cCCcEEEE-------EEEEeeecCCCe--eEEEEc
Q 000992 313 ----YEIRYLRRDGIRFMWHPTKPL-------------QLICWT-LDGQITTY-------NFIWTTAVMENS--TALVID 365 (1196)
Q Consensus 313 ----q~l~~~~~~~~~v~Wsp~~~~-------------~L~~~~-~~g~~~~~-------~~~~~~~~~d~~--~v~viD 365 (1196)
..+.++......+.|+|++.. .+.... ..|..... .+.......... .+...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (360)
T d1k32a3 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296 (360)
T ss_dssp CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCC
T ss_pred ccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCC
Confidence 112222111122334444321 000000 01111100 000000000000 111123
Q ss_pred CCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCc
Q 000992 366 GSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 366 g~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~ 427 (1196)
...+.+|++.... ...|.+.|.+++||||| +.|++++.||+|++|+.+.+..
T Consensus 297 ~~~i~~~d~~~~~--------~~~~~~~v~~~~~SpDG--~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 297 KGVLLKYDVKTRK--------VTEVKNNLTDLRLSADR--KTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp CEEEEEEETTTCC--------EEEEEEEEEEEEECTTS--CEEEEEETTSCEEEEESSCTTS
T ss_pred CCEEEEEECCCCe--------EEEecCCcCEEEECCCC--CEEEEEECCCeEEEEECCCCCc
Confidence 3456677765421 12345679999999999 9999999999999999986433
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.1e-23 Score=238.05 Aligned_cols=291 Identities=14% Similarity=0.062 Sum_probs=190.0
Q ss_pred CCCEEEEEEccCCCEEEEEECCCc-EEEEECCCC----eEEEeeeecCcEEEEEECC--CCCEEEEEeCCceEEEEecc-
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGL-LLLHSVDGN----ATEVVGRVEGGVRFISPSP--DGDLLGVTTGFGQILVMTHD- 146 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~-I~lw~~~~~----~~e~vg~~~~~I~~~awSP--Dg~~LA~~s~d~tV~l~~~~- 146 (1196)
.+.+++++|+|+|+.|+.++.++. |+.|+.... .....|++...|++++||| ||++||+++.||+|++|+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 356889999999999999875543 344654332 2345666667899999998 67899999999999998532
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
.........+. ...+..+.+.|.+++|+|||++++ +++. +.++.+++|+.++|++.....+|...+.
T Consensus 97 ~~~~~~~~~~~--------~~~~~~~~~~v~~v~~s~~~~~l~-~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 163 (325)
T d1pgua1 97 DKESNSVEVNV--------KSEFQVLAGPISDISWDFEGRRLC-VVGE----GRDNFGVFISWDSGNSLGEVSGHSQRIN 163 (325)
T ss_dssp EGGGTEEEEEE--------EEEEECCSSCEEEEEECTTSSEEE-EEEC----CSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred Ccceeeeeccc--------ccccccccCcEEEEEECCCCCccc-eeec----cccceEEEEeecccccceeeeecccccc
Confidence 11111111110 112335667889999999999998 4442 2467899999989999999999999999
Q ss_pred EEEEcCCCCe-EEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccC-CCeeEEEEccCCcceEEEEE
Q 000992 227 VLEWMPSGAN-IAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCM-SDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 227 slawsPdG~~-IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpD-g~~LAs~~~d~~~~~V~lW~ 303 (1196)
+++|+|++.. +++++.| ..|++|+.. +.....+.....+...|.+++|+|| +.+||+++.|+ .|++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~d------~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~---~i~iwd 234 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDD------GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR---KISCFD 234 (325)
T ss_dssp EEEECSSSSCEEEEEETT------TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC---CEEEEE
T ss_pred cccccccccceEEEeecc------cccccccccccccceecccccCCCCccEEeeeccccceecccccccc---ceeeee
Confidence 9999999986 5667765 479999954 3222211111223567999999997 68999999999 899999
Q ss_pred ecCCEEEEEEEEEEecCCc----EEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC
Q 000992 304 FSNNHWYLKYEIRYLRRDG----IRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM 379 (1196)
Q Consensus 304 ~~n~~wylkq~l~~~~~~~----~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v 379 (1196)
..+... ...+..+.... .++.|+ ++. .|..++.||.+ ++|+++...
T Consensus 235 ~~~~~~--~~~l~~~~~~v~~~~~s~~~~-dg~-~l~s~s~D~~i-------------------------~iwd~~~~~- 284 (325)
T d1pgua1 235 GKSGEF--LKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATI-------------------------RVWDVTTSK- 284 (325)
T ss_dssp TTTCCE--EEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEE-------------------------EEEETTTTE-
T ss_pred eccccc--cccccccccccccceeeeecc-CCC-EEEEEeCCCeE-------------------------EEEECCCCC-
Confidence 987652 23343322211 333443 332 24454445443 444332110
Q ss_pred CCCceeeee-cCCCCEE--EEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 380 PPPMYLFSL-KFPTAVT--EMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 380 pppm~~~~l-~~~~~V~--~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
+.....+ .+...+. ++.|++++ .|++++.||+|++|++
T Consensus 285 --~~~~~~~~~~~~~~~~~~~~~~~~~---~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 285 --CVQKWTLDKQQLGNQQVGVVATGNG---RIISLSLDGTLNFYEL 325 (325)
T ss_dssp --EEEEEECCTTCGGGCEEEEEEEETT---EEEEEETTSCEEEEET
T ss_pred --EEEEEEecCCcccCeEEEEEECCCC---EEEEEECCCEEEEEEC
Confidence 0111111 1222233 44444544 8899999999999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.1e-22 Score=221.59 Aligned_cols=321 Identities=12% Similarity=0.083 Sum_probs=205.2
Q ss_pred cccccCCCCCCE-EEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 67 IEHIDLEPGDSI-TAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 67 l~~~~~~~~~~v-~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
|++|. +.| +++ ++|++.||+|+.||+|++||..++++ ..+..|.++|.+++|||| ..|++++.|++|++|.
T Consensus 8 L~GH~----~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 8 LRGHM----TSVITCL--QFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EECCS----SSCEEEE--EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred ECCcC----CCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 66773 354 555 55789999999999999999998765 355567999999999997 5899999999999997
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccC---
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELK--- 221 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~--- 221 (1196)
............. .+........+++++.+++ +++ .|++|++||..++.........
T Consensus 81 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-~~~------~d~~i~iw~~~~~~~~~~~~~~~~~ 140 (355)
T d1nexb2 81 IKKGCCTHVFEGH-------------NSTVRCLDIVEYKNIKYIV-TGS------RDNTLHVWKLPKESSVPDHGEEHDY 140 (355)
T ss_dssp TTTTEEEEEECCC-------------SSCEEEEEEEEETTEEEEE-EEE------TTSEEEEEECCC-----------CC
T ss_pred ccccccccccccc-------------cccccccccccccccceee-eec------CCCcEEEEEccCCceecccccccee
Confidence 4432211111110 1112346778999999999 565 4689999998665443321100
Q ss_pred ------------------CCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccC
Q 000992 222 ------------------AFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCM 283 (1196)
Q Consensus 222 ------------------~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpD 283 (1196)
.......++.|+|++++++..+. .|++|+......- .... .....+..+.|+|+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~------~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~~ 212 (355)
T d1nexb2 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN------TLIVWDVAQMKCL-YILS-GHTDRIYSTIYDHE 212 (355)
T ss_dssp CEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTS------CEEEEETTTTEEE-EEEC-CCSSCEEEEEEETT
T ss_pred ccceeccccccceeeeeeeccccccccccccceeeeecccc------eeeeeecccccce-eeee-cccccccccccccc
Confidence 00112356788999999998864 5999996432211 1222 23457899999999
Q ss_pred CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEE
Q 000992 284 SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALV 363 (1196)
Q Consensus 284 g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~v 363 (1196)
+..+++++.|+ +|++|+..+... ...+..+......+.|+++ .|..++.+|.+
T Consensus 213 ~~~~~~~~~d~---~i~i~d~~~~~~--~~~~~~h~~~v~~~~~~~~---~l~~~~~dg~i------------------- 265 (355)
T d1nexb2 213 RKRCISASMDT---TIRIWDLENGEL--MYTLQGHTALVGLLRLSDK---FLVSAAADGSI------------------- 265 (355)
T ss_dssp TTEEEEEETTS---CEEEEETTTCCE--EEEECCCSSCCCEEEECSS---EEEEECTTSEE-------------------
T ss_pred ceeeecccccc---eEEeeecccccc--ccccccccccccccccccc---eeeeeeccccc-------------------
Confidence 99999999999 999999987642 2333333333366777652 35555555544
Q ss_pred EcCCEEEEeeccccCCCCCceeeeecCCCCEEE-EEEecCCCCCEEEEEECCCcEEEEeCCCCCcccc-ccCCceeeeee
Q 000992 364 IDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTE-MAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLED-LEGTEFVVEAC 441 (1196)
Q Consensus 364 iDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~-Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~-~~g~~~~~~~~ 441 (1196)
++|+++.. ..... .|...+.+ .+|++++ ++++++ +||+|++|++.+..++.. +.
T Consensus 266 ------~iwd~~~~-----~~~~~-~~~~~~~~~~~~~~~~--~~l~~g-~d~~i~vwd~~tg~~~~~~~~--------- 321 (355)
T d1nexb2 266 ------RGWDANDY-----SRKFS-YHHTNLSAITTFYVSD--NILVSG-SENQFNIYNLRSGKLVHANIL--------- 321 (355)
T ss_dssp ------EEEETTTC-----CEEEE-EECTTCCCCCEEEECS--SEEEEE-ETTEEEEEETTTCCBCCSCTT---------
T ss_pred ------cccccccc-----ceecc-cccCCceEEEEEcCCC--CEEEEE-eCCEEEEEECCCCCEEEEEec---------
Confidence 33333211 01011 13344444 4567777 666665 699999999986544421 22
Q ss_pred cccccCCcEEEEEEecCCeEEEEEecCCCCceEEEEee
Q 000992 442 ISETAFGSVIHLIWLGSHLLLSVSHHGPRHSNYFRGAT 479 (1196)
Q Consensus 442 ~~~~~~~~v~~l~~~~d~~lla~~~~~~~~~~~~~~~~ 479 (1196)
.+.+.|..++|+|+. ++++++.+ .++.+|.++
T Consensus 322 ---~~~~~V~~v~~~~~~-~~~~~s~d--g~~~l~~~d 353 (355)
T d1nexb2 322 ---KDADQIWSVNFKGKT-LVAAVEKD--GQSFLEILD 353 (355)
T ss_dssp ---TTCSEEEEEEEETTE-EEEEEESS--SCEEEEEEE
T ss_pred ---CCCCCEEEEEEcCCe-EEEEEECC--CcEEEEEEe
Confidence 244689999999874 56666554 455566553
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.2e-21 Score=217.66 Aligned_cols=276 Identities=9% Similarity=0.023 Sum_probs=207.6
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|.+++..|++++.|+.|+.||. .+++. +.+ +..+ .+.|.+++|+|+++.+++++.|+.|.+
T Consensus 57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~--~~~~~---~~~----~~~~----~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSASQDGKLIIWDS--YTTNK---VHA----IPLR----SSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEET--TTTEE---EEE----EECS----CSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCceeeeec--cccee---EEE----Eecc----cccEEeeEeeccceeeeeecccceeec
Confidence 7899999999999999999999999999 44443 221 2222 458999999999999999999999999
Q ss_pred EECCCC-----eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 102 HSVDGN-----ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 102 w~~~~~-----~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
|+.... .......|...+....+.++ ..++....+.+...+...-........ .+...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 187 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTFT---------------GHTGDV 187 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEEE---------------CCSSCE
T ss_pred ccccccccccccceecccccccccccccccc-ccccccccccccccccccccccccccc---------------ccceeE
Confidence 997652 12334445565666555554 677778888888766432211111110 223467
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
....+.+++.+++ +++ .++.|++||..++++..++.+|.+.+.+++|+|+|++||+++.|+ .|++|+
T Consensus 188 ~~~~~~~~~~~~~-~~~------~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~------~i~~~~ 254 (340)
T d1tbga_ 188 MSLSLAPDTRLFV-SGA------CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA------TCRLFD 254 (340)
T ss_dssp EEEEECTTSSEEE-EEE------TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEE
T ss_pred eeeccccccceeE-Eee------cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC------eEEEEe
Confidence 8899999999999 564 468999999989999999999999999999999999999999864 699999
Q ss_pred CCCeeE-EEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceE
Q 000992 257 RNGLER-SSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQL 335 (1196)
Q Consensus 257 ~nGl~~-~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L 335 (1196)
...... ..+.. ..+...|..++|+|+|++|++++.|+ +|++|+..+.. +.+.+..|......+.|+|++.. |
T Consensus 255 ~~~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~g~~dg---~i~iwd~~~~~--~~~~~~~H~~~V~~l~~s~d~~~-l 327 (340)
T d1tbga_ 255 LRADQELMTYSH-DNIICGITSVSFSKSGRLLLAGYDDF---NCNVWDALKAD--RAGVLAGHDNRVSCLGVTDDGMA-V 327 (340)
T ss_dssp TTTTEEEEEECC-TTCCSCEEEEEECSSSCEEEEEETTS---CEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSC-E
T ss_pred eccccccccccc-ccccCceEEEEECCCCCEEEEEECCC---EEEEEECCCCc--EEEEEcCCCCCEEEEEEeCCCCE-E
Confidence 654322 22211 22345699999999999999999999 99999998754 34455555444588999999876 7
Q ss_pred EEEecCCcEEE
Q 000992 336 ICWTLDGQITT 346 (1196)
Q Consensus 336 ~~~~~~g~~~~ 346 (1196)
++++.||.+.+
T Consensus 328 ~s~s~Dg~v~i 338 (340)
T d1tbga_ 328 ATGSWDSFLKI 338 (340)
T ss_dssp EEEETTSCEEE
T ss_pred EEEccCCEEEE
Confidence 77777887754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=6.1e-22 Score=220.18 Aligned_cols=325 Identities=11% Similarity=0.023 Sum_probs=216.2
Q ss_pred eeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 23 LQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
+.++++ +++.|++++.|+.|..||. .+++. +.+ +.+| .+.|.+++|+|+ ..|++++.||+|++|
T Consensus 16 itc~~~--~~~~l~tgs~Dg~i~vWd~--~~~~~---~~~----l~~H----~~~V~~l~~s~~-~~l~s~s~D~~i~iw 79 (355)
T d1nexb2 16 ITCLQF--EDNYVITGADDKMIRVYDS--INKKF---LLQ----LSGH----DGGVWALKYAHG-GILVSGSTDRTVRVW 79 (355)
T ss_dssp EEEEEE--ETTEEEEEETTTEEEEEET--TTTEE---EEE----EECC----SSCEEEEEEETT-TEEEEEETTCCEEEE
T ss_pred EEEEEE--CCCEEEEEeCCCeEEEEEC--CCCcE---EEE----EECC----CCCEEEEEEcCC-CEEEEEecccccccc
Confidence 344544 5789999999999999999 55443 222 4445 368999999996 589999999999999
Q ss_pred ECCCCeEEEe---eeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCc-eeeeeecccccCccccc-------cCcccc
Q 000992 103 SVDGNATEVV---GRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWD-LLYENPLEELAEGFDVH-------EPELSS 171 (1196)
Q Consensus 103 ~~~~~~~e~v---g~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d-~~~~~~l~~~~~~~~Vs-------~tqf~~ 171 (1196)
+......... ......+....++|++..+++++.|++|++|+..-. ................+ ......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (355)
T d1nexb2 80 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 159 (355)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEEC
T ss_pred cccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeee
Confidence 9988655321 112234667889999999999999999999863211 11110000000000000 000012
Q ss_pred CCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCe
Q 000992 172 SFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPS 251 (1196)
Q Consensus 172 ~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~ 251 (1196)
|.. ....+.++|++++ ++. .++.|++||..+++...+..++...+.++.|+|+|+++++++.++ .
T Consensus 160 ~~~--~v~~~~~~~~~~~-~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~ 224 (355)
T d1nexb2 160 HMA--SVRTVSGHGNIVV-SGS------YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT------T 224 (355)
T ss_dssp CSS--CEEEEEEETTEEE-EEE------TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS------C
T ss_pred ccc--cccccccccceee-eec------ccceeeeeecccccceeeeeccccccccccccccceeeecccccc------e
Confidence 222 3356778899998 565 468999999989999988888888899999999999999999864 5
Q ss_pred EEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEE-EEEcc
Q 000992 252 IVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIR-FMWHP 329 (1196)
Q Consensus 252 V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~-v~Wsp 329 (1196)
|++|+.. |.... .+.. +...|..++|+| ++|++++.|+ +|++|++++.. +.+.++...... ..|+|
T Consensus 225 i~i~d~~~~~~~~--~~~~-h~~~v~~~~~~~--~~l~~~~~dg---~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~ 292 (355)
T d1nexb2 225 IRIWDLENGELMY--TLQG-HTALVGLLRLSD--KFLVSAAADG---SIRGWDANDYS----RKFSYHHTNLSAITTFYV 292 (355)
T ss_dssp EEEEETTTCCEEE--EECC-CSSCCCEEEECS--SEEEEECTTS---EEEEEETTTCC----EEEEEECTTCCCCCEEEE
T ss_pred EEeeecccccccc--cccc-cccccccccccc--ceeeeeeccc---ccccccccccc----eecccccCCceEEEEEcC
Confidence 9999854 43332 2333 356799999874 6999999999 99999998864 344444433322 22333
Q ss_pred CCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEE
Q 000992 330 TKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLA 409 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lA 409 (1196)
++. .+. +..| ++|++|+++..... ......|.+.|++|+|+|+. .++
T Consensus 293 ~~~-~l~-------------------------~g~d-~~i~vwd~~tg~~~---~~~~~~~~~~V~~v~~~~~~---~~~ 339 (355)
T d1nexb2 293 SDN-ILV-------------------------SGSE-NQFNIYNLRSGKLV---HANILKDADQIWSVNFKGKT---LVA 339 (355)
T ss_dssp CSS-EEE-------------------------EEET-TEEEEEETTTCCBC---CSCTTTTCSEEEEEEEETTE---EEE
T ss_pred CCC-EEE-------------------------EEeC-CEEEEEECCCCCEE---EEEecCCCCCEEEEEEcCCe---EEE
Confidence 322 111 1123 35677766532211 00112477899999999875 889
Q ss_pred EEECCCcEEEEeCC
Q 000992 410 AILSDGCLCVVDLP 423 (1196)
Q Consensus 410 s~~~dg~v~lw~~~ 423 (1196)
+++.||+++||.++
T Consensus 340 ~~s~dg~~~l~~~d 353 (355)
T d1nexb2 340 AVEKDGQSFLEILD 353 (355)
T ss_dssp EEESSSCEEEEEEE
T ss_pred EEECCCcEEEEEEe
Confidence 99999998887654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1e-21 Score=221.73 Aligned_cols=279 Identities=14% Similarity=0.143 Sum_probs=189.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCc-EEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc--CCCEEEEEECCCc
Q 000992 22 ILQFSALDIEQNRLFFASSANN-IYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM--EKEALIVGTSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~-i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp--d~~~La~as~dG~ 98 (1196)
.+.+++|+++++.|.+++.+.. |..|+. ...... .+.+ +.+|. ...|++++|+| +|+.||+|+.||+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~--~~~~~~-~~~~----~~gh~---~~~v~~v~fsP~~~g~~lasgs~Dg~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDD--GDSKVP-PVVQ----FTGHG---SSVVTTVKFSPIKGSQYLCSGDESGK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCS--SCCSSC-SEEE----ECTTT---TSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeC--CCCCcc-ceEE----EeCCC---CCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence 5678899999999998877663 445655 222221 1111 23331 35799999998 6789999999999
Q ss_pred EEEEECCCC----eEE-----EeeeecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeeeeecccccCccccccC
Q 000992 99 LLLHSVDGN----ATE-----VVGRVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 99 I~lw~~~~~----~~e-----~vg~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
|++||...+ .++ ....|.++|.+++|||||+.|++++. ++.+.+|. |+. +..+.
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~--~~~--~~~~~----------- 153 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS--WDS--GNSLG----------- 153 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEE--TTT--CCEEE-----------
T ss_pred EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEe--ecc--cccce-----------
Confidence 999998542 111 22335788999999999999999875 55677764 332 11111
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe---ccCCCceeEEEEcCC-CCeEEEEecC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS---ELKAFMGAVLEWMPS-GANIAAVYDR 243 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~---e~~~~~v~slawsPd-G~~IAs~s~d 243 (1196)
.+.+|...+.+++|+|++.+++.+++ .|+.+++|+..+++..... ..+.+.+.+++|+|+ |++||+++.|
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~------~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d 227 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVG------DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEE------TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred eeeecccccccccccccccceEEEee------cccccccccccccccceecccccCCCCccEEeeeccccceeccccccc
Confidence 12256678899999999987651343 4789999998777776665 346677999999997 6899999886
Q ss_pred CCCCCCCeEEEEeC-CCeeEEEEEeccCC---CCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec
Q 000992 244 KSENKCPSIVFYER-NGLERSSFDINEQI---DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR 319 (1196)
Q Consensus 244 ~~~~~~~~V~~~e~-nGl~~~~f~l~~~~---~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~ 319 (1196)
. .|++|+. +|.... .+..+. ...+++++| |||++|++++.|+ +|+||++.+... .+.+..+.
T Consensus 228 ~------~i~iwd~~~~~~~~--~l~~~~~~v~~~~~s~~~-~dg~~l~s~s~D~---~i~iwd~~~~~~--~~~~~~~~ 293 (325)
T d1pgua1 228 R------KISCFDGKSGEFLK--YIEDDQEPVQGGIFALSW-LDSQKFATVGADA---TIRVWDVTTSKC--VQKWTLDK 293 (325)
T ss_dssp C------CEEEEETTTCCEEE--ECCBTTBCCCSCEEEEEE-SSSSEEEEEETTS---EEEEEETTTTEE--EEEEECCT
T ss_pred c------ceeeeeeccccccc--cccccccccccceeeeec-cCCCEEEEEeCCC---eEEEEECCCCCE--EEEEEecC
Confidence 4 6999994 554433 333221 223455555 6899999999999 999999987652 34444443
Q ss_pred CCc----EEEEEccCCCceEEEEecCCcEEEE
Q 000992 320 RDG----IRFMWHPTKPLQLICWTLDGQITTY 347 (1196)
Q Consensus 320 ~~~----~~v~Wsp~~~~~L~~~~~~g~~~~~ 347 (1196)
... ..+.|++++ .|..++.||.+.++
T Consensus 294 ~~~~~~~~~~~~~~~~--~l~s~s~dg~i~vw 323 (325)
T d1pgua1 294 QQLGNQQVGVVATGNG--RIISLSLDGTLNFY 323 (325)
T ss_dssp TCGGGCEEEEEEEETT--EEEEEETTSCEEEE
T ss_pred CcccCeEEEEEECCCC--EEEEEECCCEEEEE
Confidence 321 345555543 35666667777543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5.4e-22 Score=217.73 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=197.0
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD 146 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~ 146 (1196)
|.+| .+.|++++|+| |++|+.||+|++||..++. ..|.+.|.+++|+|++ .+++++.|++|++|+
T Consensus 9 l~gH----~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~-- 73 (287)
T d1pgua2 9 ISGH----NKGITALTVNP----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG-- 73 (287)
T ss_dssp ECCC----SSCEEEEETTT----TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCSTT-CCEEEETTTEEEETT--
T ss_pred ECCC----CCceEEEEECc----EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecCCC-eEEEEeecccccccc--
Confidence 5666 36899999998 9999999999999987642 3468899999999875 578899999998753
Q ss_pred CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCcee
Q 000992 147 WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGA 226 (1196)
Q Consensus 147 ~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~ 226 (1196)
.... ... ..+..+++++||.+++ +++ +..+.+|+..+++......... .
T Consensus 74 --~~~~-~~~-----------------~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~---~ 122 (287)
T d1pgua2 74 --ITKH-EFG-----------------SQPKVASANNDGFTAV-LTN-------DDDLLILQSFTGDIIKSVRLNS---P 122 (287)
T ss_dssp --EEEE-ECS-----------------SCEEEEEECSSSEEEE-EET-------TSEEEEEETTTCCEEEEEECSS---C
T ss_pred --cccc-ccc-----------------cceeeeeeccCCceEE-Eee-------cccceeeeccceeeeeeccccc---e
Confidence 2221 111 2346789999999888 553 4678888888898887765332 4
Q ss_pred EEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 227 VLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 227 slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
..+++|+|+.+++++.+. ..|.+|+.++.... +.+..++...|.+|+|||||++||+++.|+ .|++|+..+
T Consensus 123 ~~~~~~~~~~~~v~~~~~-----~~v~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg---~i~i~d~~~ 193 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEG-----NTIQVFKLSDLEVS-FDLKTPLRAKPSYISISPSETYIAAGDVMG---KILLYDLQS 193 (287)
T ss_dssp EEEEEECSSEEEEEETTT-----SCEEEEETTEEEEE-EECSSCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTT
T ss_pred eeeeeccCcceeeecccc-----ceeeeeecccccee-eeeeeccCCceeEEEeccCccccccccccc---cccceeecc
Confidence 567899999999988763 46999997644322 233344456799999999999999999999 899999988
Q ss_pred CEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceee
Q 000992 307 NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLF 386 (1196)
Q Consensus 307 ~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~ 386 (1196)
+.- ....+.+|......+.|+|.+... .....++ .-++....++++++|++... .. ...
T Consensus 194 ~~~-~~~~~~~h~~~v~~~~~~p~~~~~-~~~~~~~---------------~~l~sgs~D~~i~iw~~~~~---~~-~~~ 252 (287)
T d1pgua2 194 REV-KTSRWAFRTSKINAISWKPAEKGA-NEEEIEE---------------DLVATGSLDTNIFIYSVKRP---MK-IIK 252 (287)
T ss_dssp TEE-EECCSCCCSSCEEEEEECCCC-------CCSC---------------CEEEEEETTSCEEEEESSCT---TC-CEE
T ss_pred ccc-ccccccccccccceeeeccccccc-ccccCCC---------------CeeEeecCCCeEEEEECCCC---Ce-EEE
Confidence 642 112223333334789999987531 1112222 22333445557888887531 11 223
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeC
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDL 422 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~ 422 (1196)
.+ .|.+.|++|+|+|++ .|++++.||+|++|++
T Consensus 253 ~~~~h~~~V~~v~~~~~~---~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 253 ALNAHKDGVNNLLWETPS---TLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSSTTCEEEEEEEETT---EEEEEETTSCEEEEEE
T ss_pred EeCCCCCCeEEEEECCCC---EEEEEECCCeEEEEEE
Confidence 33 589999999999987 6899999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-20 Score=205.94 Aligned_cols=323 Identities=12% Similarity=0.042 Sum_probs=206.2
Q ss_pred cccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec
Q 000992 67 IEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH 145 (1196)
Q Consensus 67 l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~ 145 (1196)
|++| .+.|++ +++++|+.||+|+.||+|++||..++++ ..+..|.++|.+++|+|+ +|++++.|+++++|..
T Consensus 12 l~GH----~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 12 LKGH----DDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA 84 (342)
T ss_dssp EECS----TTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred ECCc----CCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence 6677 356765 4677899999999999999999988765 356667999999999986 9999999999999874
Q ss_pred cCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCce
Q 000992 146 DWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMG 225 (1196)
Q Consensus 146 ~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v 225 (1196)
......... . .+...+....+. +..++ .+. .++++.+|+..+++..........
T Consensus 85 ~~~~~~~~~-~--------------~~~~~~~~~~~~--~~~~~-~~~------~d~~i~~~~~~~~~~~~~~~~~~~-- 138 (342)
T d2ovrb2 85 ETGECIHTL-Y--------------GHTSTVRCMHLH--EKRVV-SGS------RDATLRVWDIETGQCLHVLMGHVA-- 138 (342)
T ss_dssp TTTEEEEEE-C--------------CCSSCEEEEEEE--TTEEE-EEE------TTSEEEEEESSSCCEEEEEECCSS--
T ss_pred ccccceecc-c--------------ccceeEeeeecc--ccccc-ccc------cceeEEEeecccccceeeeecccc--
Confidence 322211111 0 111223333333 33444 343 468999999988888777654433
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
....+.+.+..+++++.+ ..|++|+...... ...+..+ ......+++|+..|++++.|+ +|++|+..
T Consensus 139 ~~~~~~~~~~~~~~~~~d------~~i~~~d~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~s~~~dg---~i~~~d~~ 205 (342)
T d2ovrb2 139 AVRCVQYDGRRVVSGAYD------FMVKVWDPETETC-LHTLQGH---TNRVYSLQFDGIHVVSGSLDT---SIRVWDVE 205 (342)
T ss_dssp CEEEEEECSSCEEEEETT------SCEEEEEGGGTEE-EEEECCC---SSCEEEEEECSSEEEEEETTS---CEEEEETT
T ss_pred cceeeccccceeeeecCC------CeEEEeeccccee-eEEEcCc---ccccccccCCCCEEEEEeCCC---eEEEeecc
Confidence 344566777888888875 4699998653221 1223322 234566778999999999999 99999998
Q ss_pred CCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee
Q 000992 306 NNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL 385 (1196)
Q Consensus 306 n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~ 385 (1196)
.... .+.+..+......+.|+++ .|.+++.+|.+. +|++..... +...
T Consensus 206 ~~~~--~~~~~~~~~~v~~~~~~~~---~l~s~s~d~~i~-------------------------iwd~~~~~~--~~~~ 253 (342)
T d2ovrb2 206 TGNC--IHTLTGHQSLTSGMELKDN---ILVSGNADSTVK-------------------------IWDIKTGQC--LQTL 253 (342)
T ss_dssp TCCE--EEEECCCCSCEEEEEEETT---EEEEEETTSCEE-------------------------EEETTTCCE--EEEE
T ss_pred ccee--eeEecccccceeEEecCCC---EEEEEcCCCEEE-------------------------EEecccccc--cccc
Confidence 7542 2233322222245555542 355555555543 333221100 0000
Q ss_pred e-eecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEE
Q 000992 386 F-SLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSV 464 (1196)
Q Consensus 386 ~-~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~ 464 (1196)
. ...|...+.+++|++ +.+++++.||+|++|++.+..+...+. ......+...|..++|+|++.+||+
T Consensus 254 ~~~~~~~~~~~~~~~~~----~~~~s~s~Dg~i~iwd~~tg~~i~~~~-------~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 254 QGPNKHQSAVTCLQFNK----NFVITSSDDGTVKLWDLKTGEFIRNLV-------TLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp CSTTSCSSCEEEEEECS----SEEEEEETTSEEEEEETTTCCEEEEEE-------ECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred cccceeeeceeecccCC----CeeEEEcCCCEEEEEECCCCCEEEEEe-------cccCCCCCCCEEEEEECCCCCEEEE
Confidence 0 012455677777654 689999999999999998654432211 0011234557999999999999999
Q ss_pred EecCCC--CceEEEEe
Q 000992 465 SHHGPR--HSNYFRGA 478 (1196)
Q Consensus 465 ~~~~~~--~~~~~~~~ 478 (1196)
++.+.+ ..+.+|++
T Consensus 323 g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDF 338 (342)
T ss_dssp ECSSSSSCCEEEEEEC
T ss_pred EeCCCCCeeEEEEEeC
Confidence 887644 33555555
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=7.5e-21 Score=209.29 Aligned_cols=304 Identities=10% Similarity=-0.001 Sum_probs=189.9
Q ss_pred eEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc-
Q 000992 108 ATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK- 186 (1196)
Q Consensus 108 ~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~- 186 (1196)
.+++..+|+++|++++|||||++||+++.||+|++|+..-........ +..+|...|.+++|+|++.
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~------------~~~~h~~~V~~v~f~~~~~~ 70 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLL------------QSLRYKHPLLCCNFIDNTDL 70 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEE------------EEEECSSCEEEEEEEESSSE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEE------------EecCCCCCEEEEEEeCCCCC
Confidence 356677889999999999999999999999999998632111110111 1114667889999999754
Q ss_pred eEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC-eeEEE
Q 000992 187 YFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG-LERSS 264 (1196)
Q Consensus 187 ~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG-l~~~~ 264 (1196)
+|+ +++ .|++|++|+...+........+. .......+.+++..+++++.+ ..+.+|+.+. .....
T Consensus 71 ~l~-sg~------~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~wd~~~~~~~~~ 137 (342)
T d1yfqa_ 71 QIY-VGT------VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EEE-EEE------TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCE
T ss_pred EEE-Ecc------cccceeeeecccccccccccccccccccccccccccccccccccc------cccceeecccccccee
Confidence 666 555 46899999997776666554433 334566788888999999885 4799998421 11111
Q ss_pred E--EeccC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCc-EEEEEccCCCceEEEEec
Q 000992 265 F--DINEQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDG-IRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 265 f--~l~~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~-~~v~Wsp~~~~~L~~~~~ 340 (1196)
+ .+... .........+++++..+++++.|+ +|++|++.................. ....+.|..+..+.+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 214 (342)
T d1yfqa_ 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS---QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp EEEESCSSSSSSCCCEEEEEECSSEEEEEESTT---EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred eecccccccccceeeeeeeeccCCceeeecCCC---cEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC
Confidence 1 12211 123456788999999999999999 9999998643211111111111122 556677766666777777
Q ss_pred CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEE
Q 000992 341 DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVV 420 (1196)
Q Consensus 341 ~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw 420 (1196)
+|.+.+ |....... ........ .....+ .......|...|++|+|+|++ +.||+++.||+|++|
T Consensus 215 dg~~~v----~~~~~~~~--~~~~~~~~-~~~~~~-------~~~~~~~~~~~v~~l~~sp~~--~~lasg~~Dg~v~vW 278 (342)
T d1yfqa_ 215 DGRVAV----EFFDDQGD--DYNSSKRF-AFRCHR-------LNLKDTNLAYPVNSIEFSPRH--KFLYTAGSDGIISCW 278 (342)
T ss_dssp TSEEEE----EECCTTCC--STTCTTCE-EEECCC-------CCTTCCSSCCCEEEEEECTTT--CCEEEEETTSCEEEE
T ss_pred CCeEEE----EEecCCcc--eeeccccc-eeeeee-------eccCCCcccccceeEEecCCc--cEEEEECCCCEEEEE
Confidence 776543 22221000 00000000 000000 000112356679999999999 899999999999999
Q ss_pred eCCCCCccccccCCceeeeeecccccCCcEEEEEEecCCeEEEEEecC
Q 000992 421 DLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSHLLLSVSHHG 468 (1196)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla~~~~~ 468 (1196)
|..+..++..+.. ......++|+|+|.++|+++.+
T Consensus 279 D~~~~~~l~~~~~-------------~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 279 NLQTRKKIKNFAK-------------FNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp ETTTTEEEEECCC-------------CSSSEEEEEEECSSEEEEEEEC
T ss_pred ECCCCcEEEEecC-------------CCCCEEEEEEeCCCEEEEEEcC
Confidence 9987544422221 1233456788888888887654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=3.9e-20 Score=218.11 Aligned_cols=347 Identities=10% Similarity=-0.039 Sum_probs=217.0
Q ss_pred eecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCC
Q 000992 28 LDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGN 107 (1196)
Q Consensus 28 ~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~ 107 (1196)
.|.++-.+.+.++++.|..||. .+++.. .+++. +..|.+++|||||++|++++.||+|.+||..++
T Consensus 28 ~~~~~~~~v~~~d~g~v~v~D~--~t~~v~---~~~~~---------g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 28 WDLENLFSVTLRDAGQIALIDG--STYEIK---TVLDT---------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp CCGGGEEEEEETTTTEEEEEET--TTCCEE---EEEEC---------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred CCCCcEEEEEEcCCCEEEEEEC--CCCcEE---EEEeC---------CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence 3444333455688999999999 666542 22221 346999999999999999999999999999875
Q ss_pred eE------EEeeeecCcEEEEEECCCCCEE-EEEeCCceEEEEe-ccCceeeeeeccccc-CccccccCccccCCCCeEE
Q 000992 108 AT------EVVGRVEGGVRFISPSPDGDLL-GVTTGFGQILVMT-HDWDLLYENPLEELA-EGFDVHEPELSSSFSFKSP 178 (1196)
Q Consensus 108 ~~------e~vg~~~~~I~~~awSPDg~~L-A~~s~d~tV~l~~-~~~d~~~~~~l~~~~-~~~~Vs~tqf~~~~~~v~~ 178 (1196)
+. .....+.+.+.+.+|||||++| |+++.+++|++|+ ...+++.....+... ....+ .++.....
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 167 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY------HPEPRVAA 167 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE------ESCCCEEE
T ss_pred CceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceec------cCCCceeE
Confidence 32 1222456667888999999986 6778899999997 445555444433221 11111 34456788
Q ss_pred EEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 179 ISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 179 isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
|.++|||.+++ ++. ..+++|.+|+..+++...+.. ++......++|+|||+++++++.+ ...|.+++.
T Consensus 168 v~~s~dg~~~~-vs~-----~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~-----~~~v~v~d~ 236 (432)
T d1qksa2 168 ILASHYRPEFI-VNV-----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA-----RNKLVVIDT 236 (432)
T ss_dssp EEECSSSSEEE-EEE-----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG-----GTEEEEEET
T ss_pred EEECCCCCEEE-EEE-----ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc-----cceEEEeec
Confidence 99999999987 554 246899999997777665443 345567899999999999888876 357888885
Q ss_pred CC-eeEEEEEec--cCCCCcEEEEEEccCCCeeEEEEc-cCCcceEEEEEecCCE-----EEEEEEEEEecCCcEEEEEc
Q 000992 258 NG-LERSSFDIN--EQIDSTVELLKWNCMSDLLAAVVR-FEEYDSVKICFFSNNH-----WYLKYEIRYLRRDGIRFMWH 328 (1196)
Q Consensus 258 nG-l~~~~f~l~--~~~~~~V~~laWSpDg~~LAs~~~-d~~~~~V~lW~~~n~~-----wylkq~l~~~~~~~~~v~Ws 328 (1196)
.. .....+... ..+........+.+.|...++... ++ +|.+|...... |.. ....++
T Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~---~v~~~~~~~~~~~~~~~~v-----------~~~~~~ 302 (432)
T d1qksa2 237 KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD---SVALIGTDPEGHPDNAWKI-----------LDSFPA 302 (432)
T ss_dssp TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSE-----------EEEEEC
T ss_pred ccceEEEEeccCccccccCcccceecCCCCceecccccCCc---eEEecccccccccccccEE-----------EEEEEc
Confidence 43 333322221 112234556677777766665542 44 79999876421 222 223344
Q ss_pred cCCCceEEEEecCCcEEEEEEEEeee---cCC--CeeEEEEcC---------CEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 329 PTKPLQLICWTLDGQITTYNFIWTTA---VME--NSTALVIDG---------SKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 329 p~~~~~L~~~~~~g~~~~~~~~~~~~---~~d--~~~v~viDg---------~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
|++.. +.+.+.++... .|... ++. ...++++|| +++++|+...+.. ..++...|
T Consensus 303 ~~g~~-~~~~s~p~~~~----lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~-------l~~~~~~v 370 (432)
T d1qksa2 303 LGGGS-LFIKTHPNSQY----LYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG-------ITEGQPRV 370 (432)
T ss_dssp SCSCC-CCEECCTTCSE----EEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT-------CCSSCCEE
T ss_pred CCCCe-EEEEecCCccc----eeecccCCCCCCeeeEEEEEechhhcccccCCceEecccccccc-------cCCCCCcE
Confidence 43322 22222222211 22221 100 112444554 4567777653311 11466789
Q ss_pred EEEEEecCCCCCEEEEEE-----CCCcEEEEeCCCCCccccccC
Q 000992 395 TEMAFYSKSSKNCLAAIL-----SDGCLCVVDLPAPDMLEDLEG 433 (1196)
Q Consensus 395 ~~Vafspdg~~~~lAs~~-----~dg~v~lw~~~~~~~~~~~~g 433 (1196)
.+++||||| +.+.+.. .+|.|.|||..+...+..+.|
T Consensus 371 ~~~~fS~DG--~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 371 VQGEFNKDG--TEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp EEEEECTTS--SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred EEeEECCCC--CEEEEEEecCCCCCCcEEEEECCCceEEeEecC
Confidence 999999999 6664433 468899999988655544444
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=1.1e-19 Score=213.03 Aligned_cols=344 Identities=9% Similarity=-0.027 Sum_probs=201.1
Q ss_pred EccCCC--EEEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccc
Q 000992 83 YLMEKE--ALIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEEL 158 (1196)
Q Consensus 83 ~spd~~--~La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~ 158 (1196)
+++|.+ ++++++.||+|++||..++++ ..+..+ ..+..++|||||++|++++.|++|.+|+. ..++.....+...
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~ 104 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence 455544 557788899999999998765 455443 46999999999999999999999999863 2333222222211
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCC-----------ceeE
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAF-----------MGAV 227 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~-----------~v~s 227 (1196)
. +|.+.+.+++|+|||++++ +++. .++++++||..++.+......+.. ....
T Consensus 105 ~-----------~~~~~~~s~~~spDG~~l~-v~~~-----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (426)
T d1hzua2 105 I-----------EARSVESSKFKGYEDRYTI-AGAY-----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA 167 (426)
T ss_dssp S-----------EEEEEEECCSTTCTTTEEE-EEEE-----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred C-----------CCcceEEeeeecCCCCEEE-Eeec-----CCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence 1 2334457889999999987 5542 468999999989988877654433 3345
Q ss_pred EEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 228 LEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 228 lawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
++.+|+|..+.....+ ...+.++............ .+....+..++|+|+|+++.++..+. +.+.+|+..+.
T Consensus 168 i~~s~d~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~a~~~~--~~~~~~~~~~~ 239 (426)
T d1hzua2 168 IIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTS-IGAAPFLADGGWDSSHRYFMTAANNS--NKVAVIDSKDR 239 (426)
T ss_dssp EEECSSSSEEEEEETT-----TTEEEEEECSSSSSCEEEE-EECCSSEEEEEECTTSCEEEEEETTC--SEEEEEETTTT
T ss_pred EEECCCCCEEEEecCC-----CCeEEEEEeccccceeeEE-eccCCccEeeeECCCCcEEEeeeecc--cceeeeecccc
Confidence 6666776666655543 2345555432211111111 12345688999999999999988655 37888988876
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
.- ...+..... .++... +..... +.. ..+.....+.+.+.+++.... .+.+-.-....+
T Consensus 240 ~~--~~~~~~~~~------~~~~~~--~~~~~~-~~~----~~~~~~~~~d~~v~~~~~~~~------~~~~~~~~~~~~ 298 (426)
T d1hzua2 240 RL--SALVDVGKT------PHPGRG--ANFVHP-KYG----PVWSTSHLGDGSISLIGTDPK------NHPQYAWKKVAE 298 (426)
T ss_dssp EE--EEEEECSSC------CCCSCC--EEEEET-TTE----EEEEEECTTTCEEEEEECCTT------TCTTTBTSEEEE
T ss_pred cE--EEEeccCCc------ccccce--eeeecC-CCC----ceEEeccCCCceEEEeecccc------ccccccceEeEE
Confidence 42 112211110 011111 111111 111 111122223334433333211 011111122344
Q ss_pred e-cCCCCEEEEEEecCCCCCEEEE-------EECCCcEEEEeCCCCCccccccCCceeeeeecccccCCcEEEEEEecCC
Q 000992 388 L-KFPTAVTEMAFYSKSSKNCLAA-------ILSDGCLCVVDLPAPDMLEDLEGTEFVVEACISETAFGSVIHLIWLGSH 459 (1196)
Q Consensus 388 l-~~~~~V~~Vafspdg~~~~lAs-------~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~l~~~~d~ 459 (1196)
+ .|...|+.|+||||+ +.|++ +..|++|++|+..+.....++....- ......+...+.+++|+|||
T Consensus 299 l~g~~~~v~~v~~sPdg--~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~---~~~~~~~~~rv~~~~fSpDG 373 (426)
T d1hzua2 299 LQGQGGGSLFIKTHPKS--SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE---WADLGEGAKRVVQPEYNKRG 373 (426)
T ss_dssp EECSSSCCCCEECCTTC--SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH---HHCCCSSCCCEEEEEECSSS
T ss_pred EecCCCceeEEEcCCCC--ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccch---hcccCCCCccEEEEEECCCC
Confidence 4 377889999999999 89985 44578999999987544422110000 00011233479999999999
Q ss_pred eEEEE-Eec--CCCCceEEEEe
Q 000992 460 LLLSV-SHH--GPRHSNYFRGA 478 (1196)
Q Consensus 460 ~lla~-~~~--~~~~~~~~~~~ 478 (1196)
+.+.+ +.. +..+.+++|..
T Consensus 374 k~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 374 DEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp SEEEEEECCCTTSCCEEEEEET
T ss_pred CEEEEEEecCCCCCCeEEEEEC
Confidence 86543 322 23356777764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=2.9e-20 Score=215.03 Aligned_cols=296 Identities=12% Similarity=0.067 Sum_probs=184.3
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCe-------EEEeeeecCc------EEEEEECC-CCCEEEEEeCCceE
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNA-------TEVVGRVEGG------VRFISPSP-DGDLLGVTTGFGQI 140 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~-------~e~vg~~~~~------I~~~awSP-Dg~~LA~~s~d~tV 140 (1196)
.+.|.+|++++ +.|+++|.||+|++||..+.. ......+..+ +..+.+++ ++.++++++.||+|
T Consensus 14 ~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v 91 (393)
T d1sq9a_ 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91 (393)
T ss_dssp SSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred cCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcE
Confidence 36899998864 689999999999999975421 1111112222 23333333 45678899999999
Q ss_pred EEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCC-----ceEEEeeccccccCCCCEEEEEECCCC--
Q 000992 141 LVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG-----KYFATLSEFCNSSKLHKRLKVWERDSG-- 212 (1196)
Q Consensus 141 ~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG-----~~lAsvss~d~~~~~d~~irVWd~~~G-- 212 (1196)
++|... .+........... + .....+...++.++|.+++ .+++ +++ .|++++||+....
T Consensus 92 ~~w~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 92 LFYRITREDETKKVIFEKLD----L--LDSDMKKHSFWALKWGASNDRLLSHRLV-ATD------VKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEECTTTCCEEEEEEC----C--SCTTGGGSCEEEEEEECCC----CEEEE-EEE------TTSCEEEEEEESSSS
T ss_pred EEEEccCCCceeeeeccccc----e--eeeccCCCceEEEEEecCCCcccccEEE-EEc------CCCcEEEEEeecCCc
Confidence 998521 1111111111000 0 0001123456788998874 5777 454 4689999985211
Q ss_pred -------------cEEEE---eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec---cCCC
Q 000992 213 -------------TLQAS---SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN---EQID 272 (1196)
Q Consensus 213 -------------~l~~~---~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~---~~~~ 272 (1196)
.+... ...+...+.+++|+|+| +||+++.| ..|++|+.. |.....+... ..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~D------g~i~iwd~~~~~~~~~~~~~~~l~~h~ 231 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNS 231 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCC
T ss_pred ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCC------CcEEEEeeccccccccccccccccccc
Confidence 01111 12344567899999998 88999986 469999954 4443333322 1245
Q ss_pred CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEe
Q 000992 273 STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWT 352 (1196)
Q Consensus 273 ~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~ 352 (1196)
..|.+|+|||||++||+++.|+....|+||++.+... +..+.....
T Consensus 232 ~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~-------------------------~~~l~~~~~--------- 277 (393)
T d1sq9a_ 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-------------------------IGSLSVPTH--------- 277 (393)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE-------------------------EEEECBC-----------
T ss_pred ceEEEcccccccceeeeecCCCCcceeeeccccccee-------------------------eeeeccccc---------
Confidence 6899999999999999999987333588888776431 111100000
Q ss_pred eecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcccccc
Q 000992 353 TAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDMLEDLE 432 (1196)
Q Consensus 353 ~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~~~~~ 432 (1196)
.. ..+. ...+|.+.|++|+|+||+ ++||+++.|++|++|++.+..++.++.
T Consensus 278 ------------~~-----------~~~~----~~~gH~~~V~~l~fspd~--~~l~S~s~D~~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 278 ------------SS-----------QASL----GEFAHSSWVMSLSFNDSG--ETLCSAGWDGKLRFWDVKTKERITTLN 328 (393)
T ss_dssp ---------------------------------CCBSBSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ------------cc-----------ccee----eeecccCceeeeccCCCC--CeeEEECCCCEEEEEECCCCCEEEEEC
Confidence 00 0000 112488999999999999 899999999999999999887776777
Q ss_pred CCceeeeeecccccCCcEEEEEEecCCeEEE
Q 000992 433 GTEFVVEACISETAFGSVIHLIWLGSHLLLS 463 (1196)
Q Consensus 433 g~~~~~~~~~~~~~~~~v~~l~~~~d~~lla 463 (1196)
||.-.+. .....++|+|++..++
T Consensus 329 gH~~~v~--------~~~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 329 MHCDDIE--------IEEDILAVDEHGDSLA 351 (393)
T ss_dssp CCGGGCS--------SGGGCCCBCTTSCBCS
T ss_pred CcCCccc--------CCccEEEECCCCCEEE
Confidence 6532210 1223457888887654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=2e-19 Score=207.75 Aligned_cols=287 Identities=12% Similarity=-0.002 Sum_probs=183.8
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCC--CEEEEEEcc----CCCEEEEEEC
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGD--SITAFDYLM----EKEALIVGTS 95 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~v~~v~~sp----d~~~La~as~ 95 (1196)
.+.++++. ++.++++|.|+.|..|+. .+.+....... .+... ....+ .+......+ ++..+++++.
T Consensus 16 ~I~~v~~~--~~~l~S~S~D~~iriWd~--~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 16 DIFSVSAC--NSFTVSCSGDGYLKVWDN--KLLDNENPKDK---SYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp CEEEEEEC--SSEEEEEETTSEEEEEES--BCCTTCCGGGG---EEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred ccEEEEEe--CCEEEEEECCCeEEEEEC--CCCCCCcccce---eEeee-eccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence 56677764 578999999999999997 33322110000 01100 00000 122222222 3357788999
Q ss_pred CCcEEEEECCCC----eEE--Ee-----eeecCcEEEEEECCCC-----CEEEEEeCCceEEEEeccCceeeeeeccccc
Q 000992 96 SGLLLLHSVDGN----ATE--VV-----GRVEGGVRFISPSPDG-----DLLGVTTGFGQILVMTHDWDLLYENPLEELA 159 (1196)
Q Consensus 96 dG~I~lw~~~~~----~~e--~v-----g~~~~~I~~~awSPDg-----~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~ 159 (1196)
||+|++|+.... ... .. ..+...+++++|++++ .++++++.||++.+|+...............
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence 999999986421 111 11 1134568899998874 6899999999999986321110000000000
Q ss_pred Ccccc--c--cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec------cCCCceeEEE
Q 000992 160 EGFDV--H--EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE------LKAFMGAVLE 229 (1196)
Q Consensus 160 ~~~~V--s--~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e------~~~~~v~sla 229 (1196)
.... . ......+...+.+++|+||| +|| +++ .|++|||||..+|+...+.+ +|...|.+|+
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~la-sgs------~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 168 -SPTLELQGTVESPMTPSQFATSVDISERG-LIA-TGF------NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp -CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE-EEC------TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred -ccceecccceecccCCCCcEEEEEECCCC-EEE-EEe------CCCcEEEEeecccccccccccccccccccceEEEcc
Confidence 0000 0 00111344557899999999 788 565 47999999998898877654 4778899999
Q ss_pred EcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEec----------cCCCCcEEEEEEccCCCeeEEEEccCCcce
Q 000992 230 WMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDIN----------EQIDSTVELLKWNCMSDLLAAVVRFEEYDS 298 (1196)
Q Consensus 230 wsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~----------~~~~~~V~~laWSpDg~~LAs~~~d~~~~~ 298 (1196)
|+|||++||+++.|.+ ...|++|+.+ |.....+... ..|...|.+|+|||||++||+++.|+ +
T Consensus 239 ~spdg~~l~sgs~D~t---~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~---~ 312 (393)
T d1sq9a_ 239 FSPQGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG---K 312 (393)
T ss_dssp ECSSTTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS---E
T ss_pred cccccceeeeecCCCC---cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC---E
Confidence 9999999999998753 3458999954 4433322111 12457899999999999999999999 9
Q ss_pred EEEEEecCCEEEEEEEEEEecCCc----EEEEEccCCCc
Q 000992 299 VKICFFSNNHWYLKYEIRYLRRDG----IRFMWHPTKPL 333 (1196)
Q Consensus 299 V~lW~~~n~~wylkq~l~~~~~~~----~~v~Wsp~~~~ 333 (1196)
|+||++.+.. +.+++..|.+.. ..+.|+|++..
T Consensus 313 v~vWd~~~g~--~~~~l~gH~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 313 LRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp EEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSCB
T ss_pred EEEEECCCCC--EEEEECCcCCcccCCccEEEECCCCCE
Confidence 9999999876 346676665332 35778888864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.3e-18 Score=189.77 Aligned_cols=309 Identities=12% Similarity=0.036 Sum_probs=200.0
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDG 106 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~ 106 (1196)
+++++++.|++++.|+.|+.||+ .+++. +.+ +.+| .+.|.+++|+|+ .|++++.||++++|+...
T Consensus 22 ~~~~~g~~l~sgs~Dg~i~vWd~--~~~~~---~~~----~~~h----~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 22 CLQFCGNRIVSGSDDNTLKVWSA--VTGKC---LRT----LVGH----TGGVWSSQMRDN--IIISGSTDRTLKVWNAET 86 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEET--TTCCE---EEE----CCCC----SSCEEEEEEETT--EEEEEETTSCEEEEETTT
T ss_pred EEEECCCEEEEEeCCCeEEEEEC--CCCCE---EEE----EeCC----CCCEEEEEeCCC--ccccceeccccccccccc
Confidence 46667899999999999999999 55543 222 4444 368999999985 899999999999999988
Q ss_pred CeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 107 NATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 107 ~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
.... ........+....+ .+..++.+..|+++.+|+.. .......... ......+.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 146 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGH------------------VAAVRCVQYD 146 (342)
T ss_dssp TEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEECC------------------SSCEEEEEEC
T ss_pred ccceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeeecc------------------cccceeeccc
Confidence 6554 33333444555444 45688889999999988632 2211111100 1123345556
Q ss_pred CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEE
Q 000992 185 GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSS 264 (1196)
Q Consensus 185 G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~ 264 (1196)
+.+++ +++ .+++|++||...+....++.++... ...++++|+.|++++.|+ .|++|+......-
T Consensus 147 ~~~~~-~~~------~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~~dg------~i~~~d~~~~~~~- 210 (342)
T d2ovrb2 147 GRRVV-SGA------YDFMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDT------SIRVWDVETGNCI- 210 (342)
T ss_dssp SSCEE-EEE------TTSCEEEEEGGGTEEEEEECCCSSC--EEEEEECSSEEEEEETTS------CEEEEETTTCCEE-
T ss_pred cceee-eec------CCCeEEEeecccceeeEEEcCcccc--cccccCCCCEEEEEeCCC------eEEEeecccceee-
Confidence 66677 454 4689999999888888888877654 456677899999999864 6999996532211
Q ss_pred EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecC--C-cEEEEEccCCCceEEEEecC
Q 000992 265 FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRR--D-GIRFMWHPTKPLQLICWTLD 341 (1196)
Q Consensus 265 f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~--~-~~~v~Wsp~~~~~L~~~~~~ 341 (1196)
..+.. +...|..++|+ +++||+++.|+ +|++|+..+... .+.+..+.. . ...+.|+++ .+.+++.|
T Consensus 211 ~~~~~-~~~~v~~~~~~--~~~l~s~s~d~---~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~s~s~D 279 (342)
T d2ovrb2 211 HTLTG-HQSLTSGMELK--DNILVSGNADS---TVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFNKN---FVITSSDD 279 (342)
T ss_dssp EEECC-CCSCEEEEEEE--TTEEEEEETTS---CEEEEETTTCCE--EEEECSTTSCSSCEEEEEECSS---EEEEEETT
T ss_pred eEecc-cccceeEEecC--CCEEEEEcCCC---EEEEEecccccc--cccccccceeeeceeecccCCC---eeEEEcCC
Confidence 12222 34567777665 56999999999 999999987542 122221111 1 133444432 24444444
Q ss_pred CcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCcee-eeecCCCCEEEEEEecCCCCCEEEEEECCCc----
Q 000992 342 GQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYL-FSLKFPTAVTEMAFYSKSSKNCLAAILSDGC---- 416 (1196)
Q Consensus 342 g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~-~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~---- 416 (1196)
|. |++|+++....-..+.. ..-.|.+.|++|+|+|++ ..||+++.||+
T Consensus 280 g~-------------------------i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~--~~la~g~~dGt~~~~ 332 (342)
T d2ovrb2 280 GT-------------------------VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK--LVCAVGSRNGTEETK 332 (342)
T ss_dssp SE-------------------------EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE--EEEEEECSSSSSCCE
T ss_pred CE-------------------------EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC--CEEEEEeCCCCCeeE
Confidence 44 44444321110000000 001356789999999999 89999999997
Q ss_pred EEEEeCCC
Q 000992 417 LCVVDLPA 424 (1196)
Q Consensus 417 v~lw~~~~ 424 (1196)
|++||++.
T Consensus 333 l~~~Df~~ 340 (342)
T d2ovrb2 333 LLVLDFDV 340 (342)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999873
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.83 E-value=1.2e-19 Score=203.50 Aligned_cols=194 Identities=9% Similarity=0.022 Sum_probs=143.3
Q ss_pred EEeeec-CCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCC--cEEE
Q 000992 25 FSALDI-EQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSG--LLLL 101 (1196)
Q Consensus 25 ~~~~d~-~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG--~I~l 101 (1196)
..-|.| |++.+.+++.. .|+.|+. ..+.. +. + .| .+.|.+++|||||+.|++++.++ .|.+
T Consensus 7 ~~~fSP~dG~~~a~~~~g-~v~v~d~--~~~~~---~~-----~-~~----~~~v~~~~~spDg~~l~~~~~~~g~~v~v 70 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSRG-QAFIQDV--SGTYV---LK-----V-PE----PLRIRYVRRGGDTKVAFIHGTREGDFLGI 70 (360)
T ss_dssp EEEEEECGGGCEEEEETT-EEEEECT--TSSBE---EE-----C-SC----CSCEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred cccccCCCCCEEEEEECC-eEEEEEC--CCCcE---EE-----c-cC----CCCEEEEEECCCCCEEEEEEcCCCCEEEE
Confidence 455888 89998888764 6999998 44432 11 1 12 46899999999999999877654 6899
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
||..+++...+-.|.+.|.+++|||||+.|++++.++++.+|...-...... + ..+...+.+++|
T Consensus 71 ~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~ 135 (360)
T d1k32a3 71 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI-E--------------RSREAMITDFTI 135 (360)
T ss_dssp EETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-E--------------ECSSSCCCCEEE
T ss_pred EECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeee-e--------------ecccccccchhh
Confidence 9999988876666789999999999999999999999999986432111111 1 123345678999
Q ss_pred ccCCceEEEeeccccc----cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC
Q 000992 182 RGDGKYFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER 257 (1196)
Q Consensus 182 spDG~~lAsvss~d~~----~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~ 257 (1196)
+|||++|| .+..+.. ...++.+++|+..+++...... +.+.+..++|+|||+.||+++.+. .+.+|+.
T Consensus 136 spdg~~la-~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~s~~~------~~~~~d~ 207 (360)
T d1k32a3 136 SDNSRFIA-YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDADSKNLYYLSYRS------LDPSPDR 207 (360)
T ss_dssp CTTSCEEE-EEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-SSSBEEEEEECTTSCEEEEEESCC------CCCEECS
T ss_pred ccceeeee-eeccccccceeeccccceeeeccccCceeeecc-cccccccccccCCCCEEEEEeCCC------ceEcccc
Confidence 99999999 4443221 1345689999997776655544 556678899999999999998753 3556654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=1.8e-19 Score=212.25 Aligned_cols=198 Identities=9% Similarity=-0.010 Sum_probs=138.3
Q ss_pred ccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCc
Q 000992 84 LMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEG 161 (1196)
Q Consensus 84 spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~ 161 (1196)
.++.-++++.+.+|+|.+||..++++. .+..+ ..+..++|||||++|++++.|++|.+|+. ..+......+....
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~-- 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-- 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC--
Confidence 334344588999999999999998764 44332 46999999999999999999999999863 22222111221111
Q ss_pred cccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc-----------CCCceeEEEE
Q 000992 162 FDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-----------KAFMGAVLEW 230 (1196)
Q Consensus 162 ~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-----------~~~~v~slaw 230 (1196)
+|.+.+.+.+|||||++++ +++. .+++|+|||..+|++..+... ..+....+.+
T Consensus 106 ---------~~~~~~~s~~~SpDG~~l~-vs~~-----~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (432)
T d1qksa2 106 ---------EARSIETSKMEGWEDKYAI-AGAY-----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170 (432)
T ss_dssp ---------EEEEEEECCSTTCTTTEEE-EEEE-----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred ---------CCCCeEEecccCCCCCEEE-EEcC-----CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEE
Confidence 2223456678899999986 3332 468999999999998887643 2334567899
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCE
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+|+|..++.+..+ ...|.+|+.... ......++ ....+..++|+|||+++++++.+. +.|.+|+..+..
T Consensus 171 s~dg~~~~vs~~~-----~~~i~~~d~~~~~~~~~~~i~--~g~~~~~~~~spdg~~~~va~~~~--~~v~v~d~~~~~ 240 (432)
T d1qksa2 171 SHYRPEFIVNVKE-----TGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANAR--NKLVVIDTKEGK 240 (432)
T ss_dssp CSSSSEEEEEETT-----TTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGG--TEEEEEETTTTE
T ss_pred CCCCCEEEEEEcc-----CCeEEEEEccCCCcceEEEEc--ccCccccceECCCCCEEEEecccc--ceEEEeecccce
Confidence 9999987666554 357888986432 22222333 234688999999999999988765 379999988764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1e-17 Score=180.18 Aligned_cols=268 Identities=11% Similarity=0.141 Sum_probs=172.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
..|++++ +||+.||+|+.||+|++||.+++++. .+..|.+.|.+++| |+++|++++.|++|.+|+..........
T Consensus 16 ~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~ 91 (293)
T d1p22a2 16 KGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTL 91 (293)
T ss_dssp CCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred CCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccc
Confidence 5788764 58999999999999999999987654 55567999999887 6789999999999999874322211111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc---EEEEeccCCCceeEEEEc
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT---LQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~---l~~~~e~~~~~v~slaws 231 (1196)
.. .......+.+....++ ++. .++.+++|+..+.. .......+...+..+.|.
T Consensus 92 ~~-----------------~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 147 (293)
T d1p22a2 92 IH-----------------HCEAVLHLRFNNGMMV-TCS------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 147 (293)
T ss_dssp CC-----------------CCSCEEEEECCTTEEE-EEE------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE
T ss_pred cc-----------------ccccccccccccccee-ecc------cccceeEeeccccccccccccccccccccccceec
Confidence 11 1113445556666666 343 36899999985543 233445667777776666
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
++ .+++++.| ..|++|+.+ +.... .+..+ ...|..+.|+ +..|++++.|+ +|++|+..+....
T Consensus 148 ~~--~~~~~s~d------~~i~~~d~~~~~~~~--~~~~~-~~~v~~~~~~--~~~l~~~~~dg---~i~i~d~~~~~~~ 211 (293)
T d1p22a2 148 DK--YIVSASGD------RTIKVWNTSTCEFVR--TLNGH-KRGIACLQYR--DRLVVSGSSDN---TIRLWDIECGACL 211 (293)
T ss_dssp TT--EEEEEETT------SEEEEEETTTCCEEE--EEECC-SSCEEEEEEE--TTEEEEEETTS---CEEEEETTTCCEE
T ss_pred cc--ccccccCC------CceeeecCCCCcEEE--EEccc-ccccccccCC--CCeEEEecCCC---EEEEEecccceee
Confidence 54 56777765 469999964 33322 23322 3457666665 67899999999 9999999875421
Q ss_pred EEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCC----CCCceee
Q 000992 311 LKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLM----PPPMYLF 386 (1196)
Q Consensus 311 lkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~v----pppm~~~ 386 (1196)
.... ........+++++. .|..+..+| .+++|++..... +...+..
T Consensus 212 --~~~~--~~~~~v~~~~~~~~-~l~sg~~dg-------------------------~i~iwd~~~~~~~~~~~~~~~~~ 261 (293)
T d1p22a2 212 --RVLE--GHEELVRCIRFDNK-RIVSGAYDG-------------------------KIKVWDLVAALDPRAPAGTLCLR 261 (293)
T ss_dssp --EEEC--CCSSCEEEEECCSS-EEEEEETTS-------------------------CEEEEEHHHHTSTTSCTTTTEEE
T ss_pred --eeec--ccceeeeeccccce-EEEEEcCCC-------------------------EEEEEECCCCccccccCCceeeE
Confidence 1111 11112223333332 244444444 444554432221 1223344
Q ss_pred ee-cCCCCEEEEEEecCCCCCEEEEEECCCcEEEEe
Q 000992 387 SL-KFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVD 421 (1196)
Q Consensus 387 ~l-~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~ 421 (1196)
++ .|.+.|++|+|+ + +.|++++.||+|++||
T Consensus 262 ~~~~H~~~V~~v~~d--~--~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 262 TLVEHSGRVFRLQFD--E--FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECCCSSCCCCEEEC--S--SCEEECCSSSEEEEEC
T ss_pred EecCCCCCEEEEEEc--C--CEEEEEecCCEEEEeC
Confidence 55 488999999984 4 6899999999999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=5.9e-18 Score=198.00 Aligned_cols=347 Identities=10% Similarity=-0.047 Sum_probs=200.6
Q ss_pred EEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEE----
Q 000992 36 FFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEV---- 111 (1196)
Q Consensus 36 ~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~---- 111 (1196)
.+.++++.|..||. .+++. +.+++. +..+.+++|||||+.|++++.||+|++||..+++...
T Consensus 36 V~~~~dg~v~vwD~--~t~~~---~~~l~~---------g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i 101 (426)
T d1hzua2 36 VTLRDAGQIALVDG--DSKKI---VKVIDT---------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101 (426)
T ss_dssp EEETTTTEEEEEET--TTCSE---EEEEEC---------CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred EEEcCCCEEEEEEC--CCCcE---EEEEeC---------CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEE
Confidence 33467899999999 56554 222221 2469999999999999999999999999999865321
Q ss_pred --eeeecCcEEEEEECCCCCEEEEEe-CCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCce
Q 000992 112 --VGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKY 187 (1196)
Q Consensus 112 --vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~ 187 (1196)
...|.+.+.+++|||||++|++++ .++++.+|+ ..+.++.....+... +....| .++.....++.++|+.+
T Consensus 102 ~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~i~~s~d~~~ 176 (426)
T d1hzua2 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT----VDTQTY-HPEPRVAAIIASHEHPE 176 (426)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC----SSSCCE-ESCCCEEEEEECSSSSE
T ss_pred eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC----ccceee-cCCCceeEEEECCCCCE
Confidence 123566688899999999986664 788999986 334444333322211 100011 23455678899999998
Q ss_pred EEEeeccccccCCCCEEEEEECCCCcE-EEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEE
Q 000992 188 FATLSEFCNSSKLHKRLKVWERDSGTL-QASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSF 265 (1196)
Q Consensus 188 lAsvss~d~~~~~d~~irVWd~~~G~l-~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f 265 (1196)
+. ++.. +.+.+.+++..++.. .....++......++|+|+|+++.++..+. ..+.+++. ++.....+
T Consensus 177 ~~-~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~-----~~~~~~~~~~~~~~~~~ 245 (426)
T d1hzua2 177 FI-VNVK-----ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNS-----NKVAVIDSKDRRLSALV 245 (426)
T ss_dssp EE-EEET-----TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTC-----SEEEEEETTTTEEEEEE
T ss_pred EE-EecC-----CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecc-----cceeeeecccccEEEEe
Confidence 88 5542 356787887755543 223345666779999999999998887653 46666663 44433332
Q ss_pred EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC-----CEEEEEEEEEEecCCcEEEEEccCCCceEEEEec
Q 000992 266 DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN-----NHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTL 340 (1196)
Q Consensus 266 ~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n-----~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~ 340 (1196)
..... ......+.|.+++..........+...+.+|.... +.|-+...+..+...+..+.|||++.. |.+...
T Consensus 246 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~-l~v~~~ 323 (426)
T d1hzua2 246 DVGKT-PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSH-LYVDTT 323 (426)
T ss_dssp ECSSC-CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSE-EEECCT
T ss_pred ccCCc-ccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCce-EEEeec
Confidence 22211 11111222222222111111111111455555432 223345566665444578999999875 332110
Q ss_pred CCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCC---Cce-eeee-cCCCCEEEEEEecCCCCCEE-EEE---
Q 000992 341 DGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPP---PMY-LFSL-KFPTAVTEMAFYSKSSKNCL-AAI--- 411 (1196)
Q Consensus 341 ~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpp---pm~-~~~l-~~~~~V~~Vafspdg~~~~l-As~--- 411 (1196)
++..+ .+++++++|++....... |.. ...+ .+...|.+++||||| +.+ +++
T Consensus 324 --------------~~~s~----~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG--k~i~vs~~~~ 383 (426)
T d1hzua2 324 --------------FNPDA----RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG--DEVWFSVWNG 383 (426)
T ss_dssp --------------TCSSH----HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS--SEEEEEECCC
T ss_pred --------------CCCCc----ccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC--CEEEEEEecC
Confidence 01000 022345555543221110 000 0011 346679999999999 655 443
Q ss_pred -ECCCcEEEEeCCCCCccccccCC
Q 000992 412 -LSDGCLCVVDLPAPDMLEDLEGT 434 (1196)
Q Consensus 412 -~~dg~v~lw~~~~~~~~~~~~g~ 434 (1196)
+.+|+|+|||..+...+..+.|+
T Consensus 384 ~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 384 KNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp TTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCCCeEEEEECCCCeEEEEECCC
Confidence 35788999999876544344443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=2.9e-18 Score=187.58 Aligned_cols=259 Identities=14% Similarity=0.092 Sum_probs=180.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.+++|++ |++++.|+.|..||+ .+. ..+| .+.|.++.|++++ .+++++.|++|++
T Consensus 15 ~I~~l~~s~----l~sgs~Dg~v~~Wd~--~~~------------~~~h----~~~V~~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 15 GITALTVNP----LISGSYDGRIMEWSS--SSM------------HQDH----SNLIVSLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp CEEEEETTT----TEEEETTSCEEETTT--TEE------------ECCC----CSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred ceEEEEECc----EEEEeCCCeEEEEEC--CCC------------CCCC----CCCEEEEEecCCC-eEEEEeecccccc
Confidence 788899977 999999999999998 222 1223 3579999998765 5788999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
|+.... .+...+.+++++|||..+++++.++ +.+|. ...+.+...... ....+
T Consensus 72 w~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------------------~~~~~ 125 (287)
T d1pgua2 72 NGITKH------EFGSQPKVASANNDGFTAVLTNDDD-LLILQSFTGDIIKSVRLN-------------------SPGSA 125 (287)
T ss_dssp TTEEEE------ECSSCEEEEEECSSSEEEEEETTSE-EEEEETTTCCEEEEEECS-------------------SCEEE
T ss_pred cccccc------ccccceeeeeeccCCceEEEeeccc-ceeeeccceeeeeecccc-------------------ceeee
Confidence 986542 2344578899999998888776654 55553 444443333221 13457
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe-ccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS-ELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~-e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
++|++..++ +++. .++.+++|+..+.+..... .++.+.+.+++|+|+|++||+++.++ .|++|+...
T Consensus 126 ~~~~~~~~~-v~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg------~i~i~d~~~ 193 (287)
T d1pgua2 126 VSLSQNYVA-VGLE-----EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG------KILLYDLQS 193 (287)
T ss_dssp EEECSSEEE-EEET-----TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTT
T ss_pred eeccCccee-eecc-----ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccc------cccceeecc
Confidence 788999998 6763 3478999998555555544 45778899999999999999999864 699999643
Q ss_pred eeEEEEEeccCCCCcEEEEEEccC----------CCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEcc
Q 000992 260 LERSSFDINEQIDSTVELLKWNCM----------SDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpD----------g~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp 329 (1196)
..... .....+...|.+++|+|+ +.+||+++.|+ +|++|++.+..- +...+..|......+.|+|
T Consensus 194 ~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~---~i~iw~~~~~~~-~~~~~~~h~~~V~~v~~~~ 268 (287)
T d1pgua2 194 REVKT-SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT---NIFIYSVKRPMK-IIKALNAHKDGVNNLLWET 268 (287)
T ss_dssp TEEEE-CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTS---CEEEEESSCTTC-CEEETTSSTTCEEEEEEEE
T ss_pred ccccc-ccccccccccceeeecccccccccccCCCCeeEeecCCC---eEEEEECCCCCe-EEEEeCCCCCCeEEEEECC
Confidence 22110 111234568999999975 46899999999 999999875321 1112222333348899999
Q ss_pred CCCceEEEEecCCcEEEEE
Q 000992 330 TKPLQLICWTLDGQITTYN 348 (1196)
Q Consensus 330 ~~~~~L~~~~~~g~~~~~~ 348 (1196)
++ .|..+..||.+.+++
T Consensus 269 ~~--~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 269 PS--TLVSSGADACIKRWN 285 (287)
T ss_dssp TT--EEEEEETTSCEEEEE
T ss_pred CC--EEEEEECCCeEEEEE
Confidence 75 366667788776443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=5.7e-17 Score=177.77 Aligned_cols=283 Identities=7% Similarity=-0.015 Sum_probs=184.8
Q ss_pred cccceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCC-CEEEEEECCC
Q 000992 19 KDEILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK-EALIVGTSSG 97 (1196)
Q Consensus 19 ~~~~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~-~~La~as~dG 97 (1196)
+.+.+.+++|.++++.|+++|.|+.|..||+ ..+.....+.. ..+| .+.|.+++|+|++ ..|++|+.||
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~--~~~~~~~~~~~----~~~h----~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKF--DIQAKNVDLLQ----SLRY----KHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEE--ETTTTEEEEEE----EEEC----SSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEc--cCCCcceEEEE----ecCC----CCCEEEEEEeCCCCCEEEEccccc
Confidence 3448999999999999999999999999998 33322111110 1123 4689999999975 5789999999
Q ss_pred cEEEEECCCCeE-E-EeeeecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNAT-E-VVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~-e-~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+|++|+..++.. . ....+........+.+++..+++++.++++.+|+. .............. .....
T Consensus 80 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~----------~~~~~ 149 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----------NNTKV 149 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS----------SSSSS
T ss_pred ceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccc----------ccccc
Confidence 999999986432 2 33333455677788999999999999999999862 11111111110000 01112
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE---EeccCCCceeEEEEc-CCCCeEEEEecCCCCCCCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA---SSELKAFMGAVLEWM-PSGANIAAVYDRKSENKCP 250 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~---~~e~~~~~v~slaws-PdG~~IAs~s~d~~~~~~~ 250 (1196)
......+.+++..++ +++ .++.|++|+...++... ...+........++. +++..+++++.+ .
T Consensus 150 ~~~~~~~~~~~~~~~-~~~------~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d------g 216 (342)
T d1yfqa_ 150 KNKIFTMDTNSSRLI-VGM------NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID------G 216 (342)
T ss_dssp CCCEEEEEECSSEEE-EEE------STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT------S
T ss_pred eeeeeeeeccCCcee-eec------CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC------C
Confidence 335678888999998 565 46999999986554322 223333444555554 567788888875 3
Q ss_pred eEEEEeCCCe-------eEEEEEec------cCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 251 SIVFYERNGL-------ERSSFDIN------EQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 251 ~V~~~e~nGl-------~~~~f~l~------~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
.+.+|..+.. ....+... ..+...|.+|+|||+|.+||+++.|+ +|++||..+.+. + .+ +
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg---~v~vWD~~~~~~-l-~~--~ 289 (342)
T d1yfqa_ 217 RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDG---IISCWNLQTRKK-I-KN--F 289 (342)
T ss_dssp EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTS---CEEEEETTTTEE-E-EE--C
T ss_pred eEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCC---EEEEEECCCCcE-E-EE--e
Confidence 5777764321 11111111 11234689999999999999999999 999999998653 1 12 2
Q ss_pred ec-CCcEEEEEccCCCceEEEEecCC
Q 000992 318 LR-RDGIRFMWHPTKPLQLICWTLDG 342 (1196)
Q Consensus 318 ~~-~~~~~v~Wsp~~~~~L~~~~~~g 342 (1196)
.. .....++|+|++.. |++++.++
T Consensus 290 ~~~~~~~~~~~s~~~~~-l~~a~sdd 314 (342)
T d1yfqa_ 290 AKFNEDSVVKIACSDNI-LCLATSDD 314 (342)
T ss_dssp CCCSSSEEEEEEECSSE-EEEEEECT
T ss_pred cCCCCCEEEEEEeCCCE-EEEEEcCC
Confidence 22 22366778887764 55555443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.78 E-value=3.7e-16 Score=170.29 Aligned_cols=268 Identities=11% Similarity=0.059 Sum_probs=177.8
Q ss_pred EEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEE-EEeCCceEEEEec-cCceeeeeecccccCccccccC
Q 000992 91 IVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLG-VTTGFGQILVMTH-DWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 91 a~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA-~~s~d~tV~l~~~-~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
++.+.||+|.+||+.++++. .+. ..+....++|||||++|+ +++.+++|.+|+. ....+.....+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~----------- 73 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG----------- 73 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-----------
Confidence 45678999999999998764 333 245688999999999885 5567889999873 34444333322
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCC
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSEN 247 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~ 247 (1196)
.....++|++||.+++ ++.. .+..+++|+..+++.......+ .....++|+|+|+.++.+...
T Consensus 74 ------~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~---- 136 (301)
T d1l0qa2 74 ------SSPQGVAVSPDGKQVY-VTNM-----ASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNG---- 136 (301)
T ss_dssp ------SSEEEEEECTTSSEEE-EEET-----TTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETT----
T ss_pred ------cccccccccccccccc-cccc-----ccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeecc----
Confidence 2347899999999887 5542 4689999999888887776644 445889999999998776653
Q ss_pred CCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEE
Q 000992 248 KCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFM 326 (1196)
Q Consensus 248 ~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~ 326 (1196)
...+.+|+.. +..... +. ....+..++|+||+..++++..+. ..+.+|....... ...+.. ...+..+.
T Consensus 137 -~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~-~~~~~~~~ 206 (301)
T d1l0qa2 137 -DKTVSVINTVTKAVINT--VS--VGRSPKGIAVTPDGTKVYVANFDS--MSISVIDTVTNSV--IDTVKV-EAAPSGIA 206 (301)
T ss_dssp -TTEEEEEETTTTEEEEE--EE--CCSSEEEEEECTTSSEEEEEETTT--TEEEEEETTTTEE--EEEEEC-SSEEEEEE
T ss_pred -ccceeeeeccccceeee--cc--cCCCceEEEeeccccceeeecccc--cccccccccceee--eecccc-cCCcceee
Confidence 3567778754 332222 22 234588999999999999988764 2677777776543 122221 11236678
Q ss_pred EccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCC
Q 000992 327 WHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN 406 (1196)
Q Consensus 327 Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~ 406 (1196)
|++++.. +.+...++. .+ ++.+|+.... ....++.+...+.+|+||||| +
T Consensus 207 ~~~~g~~-~~v~~~~~~--------------~~--------~v~v~D~~t~-----~~~~~~~~~~~~~~va~spdg--~ 256 (301)
T d1l0qa2 207 VNPEGTK-AYVTNVDKY--------------FN--------TVSMIDTGTN-----KITARIPVGPDPAGIAVTPDG--K 256 (301)
T ss_dssp ECTTSSE-EEEEEECSS--------------CC--------EEEEEETTTT-----EEEEEEECCSSEEEEEECTTS--S
T ss_pred ccccccc-cccccccce--------------ee--------eeeeeecCCC-----eEEEEEcCCCCEEEEEEeCCC--C
Confidence 8888765 333322110 11 2222222211 112334455678999999999 7
Q ss_pred EE-EEEECCCcEEEEeCCCCCc
Q 000992 407 CL-AAILSDGCLCVVDLPAPDM 427 (1196)
Q Consensus 407 ~l-As~~~dg~v~lw~~~~~~~ 427 (1196)
.| ++++.|++|++||..+...
T Consensus 257 ~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 257 KVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEECCCCeEEEEECCCCeE
Confidence 65 6677789999999986533
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.75 E-value=2.3e-15 Score=163.81 Aligned_cols=260 Identities=12% Similarity=0.066 Sum_probs=179.0
Q ss_pred EEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEE-E
Q 000992 35 LFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATE-V 111 (1196)
Q Consensus 35 l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e-~ 111 (1196)
+|++ ++++.|..||+ .+++.. .+++ . ++.+.+++|+|||+.|+ +++.+|+|.+||..+++.. .
T Consensus 4 ~yV~~~~~~~v~v~D~--~t~~~~---~~i~-------~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~ 69 (301)
T d1l0qa2 4 AYIANSESDNISVIDV--TSNKVT---ATIP-------V--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT 69 (301)
T ss_dssp EEEEETTTTEEEEEET--TTTEEE---EEEE-------C--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCEEEEEEC--CCCeEE---EEEE-------C--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee
Confidence 5665 45778999999 555542 2211 1 35689999999999885 5567899999999987653 3
Q ss_pred eeeecCcEEEEEECCCCCEEEEEe-CCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEE
Q 000992 112 VGRVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFA 189 (1196)
Q Consensus 112 vg~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lA 189 (1196)
+.. ...+..++|+|||+.+++++ .++.+.+|+.. ........ +......++|+|||.+++
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~dg~~~~ 131 (301)
T d1l0qa2 70 VPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-----------------TGKSPLGLALSPDGKKLY 131 (301)
T ss_dssp EEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------CSSSEEEEEECTTSSEEE
T ss_pred eec-cccccccccccccccccccccccceeeecccccceeeeecc-----------------ccccceEEEeecCCCeee
Confidence 333 35689999999999777665 56677776532 22222111 113457899999999987
Q ss_pred EeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEecc
Q 000992 190 TLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINE 269 (1196)
Q Consensus 190 svss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~ 269 (1196)
++. ..+..+.+|+..++..........+ ...++|+|+++.++++..+. ..+.+|...+..... .+.
T Consensus 132 -~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~- 197 (301)
T d1l0qa2 132 -VTN-----NGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID-TVK- 197 (301)
T ss_dssp -EEE-----TTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE-EEE-
T ss_pred -eee-----ccccceeeeeccccceeeecccCCC-ceEEEeeccccceeeecccc-----cccccccccceeeee-ccc-
Confidence 444 2468999999988888887765444 58899999999998887753 466667655433221 122
Q ss_pred CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe-cCCcEE
Q 000992 270 QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT-LDGQIT 345 (1196)
Q Consensus 270 ~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~-~~g~~~ 345 (1196)
....+..++|+++|+.++++..+...++|++||..+... .+.+.. ...+..++|+|++.. |.+.. .+|.+.
T Consensus 198 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~-~~~~~~va~spdg~~-l~va~~~~~~i~ 269 (301)
T d1l0qa2 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPV-GPDPAGIAVTPDGKK-VYVALSFCNTVS 269 (301)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSE-EEEEETTTTEEE
T ss_pred -ccCCcceeeccccccccccccccceeeeeeeeecCCCeE--EEEEcC-CCCEEEEEEeCCCCE-EEEEECCCCeEE
Confidence 234578999999999999888776555899999998752 333332 123478999999875 44333 355553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=2.4e-17 Score=183.05 Aligned_cols=312 Identities=11% Similarity=-0.067 Sum_probs=182.0
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeEE-Eee-eecCcEEEEEECCCCCEEEE-EeCCceEEEEe-ccCceeeeeecc
Q 000992 81 FDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVG-RVEGGVRFISPSPDGDLLGV-TTGFGQILVMT-HDWDLLYENPLE 156 (1196)
Q Consensus 81 v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg-~~~~~I~~~awSPDg~~LA~-~s~d~tV~l~~-~~~d~~~~~~l~ 156 (1196)
++|++++++|++++.+++|.+||+.++++- ... .+..++.+++|||||++|.+ ++.+++|.+|+ ..++.+......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 468999999999999999999999998763 222 23456889999999998754 45789999986 334444333322
Q ss_pred cccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECCCCcEEEEecc--CCCceeEE
Q 000992 157 ELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSEL--KAFMGAVL 228 (1196)
Q Consensus 157 ~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~~G~l~~~~e~--~~~~v~sl 228 (1196)
... . .+......++|+|||+++. ++..+.. ...+..+++|+..+|+....... .......+
T Consensus 82 ~~~-~---------~~~~~~~~v~~s~DG~~l~-v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (346)
T d1jmxb_ 82 SVP-G---------EVGRSMYSFAISPDGKEVY-ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150 (346)
T ss_dssp CST-T---------EEEECSSCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCE
T ss_pred ccc-c---------ccCCceEEEEEecCCCEEE-EEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEE
Confidence 111 0 0011236799999999988 5542211 12467899999877765543321 22345678
Q ss_pred EEcCCCCeEEEEecCCCCCCCCeEEEEeC-CCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC
Q 000992 229 EWMPSGANIAAVYDRKSENKCPSIVFYER-NGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN 307 (1196)
Q Consensus 229 awsPdG~~IAs~s~d~~~~~~~~V~~~e~-nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~ 307 (1196)
.++++|.++++++ .+.+|+. ++..... ++ ....+..++|+|++..+....... ..+.+|+....
T Consensus 151 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 215 (346)
T d1jmxb_ 151 RAADDGSLYVAGP---------DIYKMDVKTGKYTVA--LP--LRNWNRKGYSAPDVLYFWPHQSPR--HEFSMLYTIAR 215 (346)
T ss_dssp EECTTSCEEEESS---------SEEEECTTTCCEEEE--EC--STTCCCTTBCCCBCCCCCCCCCTT--CEEEEEEEEEE
T ss_pred EecCCCEEEEeCC---------cceEEEccCCCEEEE--Ee--cCCCccceEEeccccEEEEEecCC--CceEeeeeeee
Confidence 8899998877643 3677874 3433332 22 123456788999998876655443 25555554321
Q ss_pred EEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeee
Q 000992 308 HWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFS 387 (1196)
Q Consensus 308 ~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~ 387 (1196)
..-....+...........|+.............+........+ .+++ ..++....+.+.+|+.... .....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~v~v~d~~~~-----~~~~~ 287 (346)
T d1jmxb_ 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR--SPKD-PNQIYGVLNRLAKYDLKQR-----KLIKA 287 (346)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE--CSSC-TTEEEEEESEEEEEETTTT-----EEEEE
T ss_pred eccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEE--eCCC-CEEEEecCCeEEEEECCCC-----cEEEE
Confidence 00000000000000123445544433222211111111111111 1223 3333444456777765432 12344
Q ss_pred ecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 388 LKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 388 l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
+.+...+.+++||||| +.|++++.||+|++||..+....
T Consensus 288 ~~~~~~~~~va~s~DG--~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 288 ANLDHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp EECSSCCCEEEECSSS--SCEEEESBSSEEEEEETTTTEEE
T ss_pred EcCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECccCCEE
Confidence 5566789999999999 89999999999999999875443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=5.3e-16 Score=171.42 Aligned_cols=280 Identities=11% Similarity=0.023 Sum_probs=167.8
Q ss_pred CEEEEEECCCcEEEEECCCCeEE-Eee--eecCcEEEEEECCCCCEEE-EEeCCceEEEEe-ccCceeeeeecccccCcc
Q 000992 88 EALIVGTSSGLLLLHSVDGNATE-VVG--RVEGGVRFISPSPDGDLLG-VTTGFGQILVMT-HDWDLLYENPLEELAEGF 162 (1196)
Q Consensus 88 ~~La~as~dG~I~lw~~~~~~~e-~vg--~~~~~I~~~awSPDg~~LA-~~s~d~tV~l~~-~~~d~~~~~~l~~~~~~~ 162 (1196)
+++++++.||+|.+||..++++. .+. .+...+.+++|||||++|+ +++.+++|.+|+ ..++.+.....+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~--- 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCc---
Confidence 47899999999999999997653 332 2234578999999999885 556789999997 345555444433221
Q ss_pred ccccCccccCCCCeEEEEEccCCceEEEeeccccc------cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCe
Q 000992 163 DVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGAN 236 (1196)
Q Consensus 163 ~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~------~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~ 236 (1196)
.+......++|+|||++++ ++..+.. ...+..+.+||..+++...+... ...+..++|+|||++
T Consensus 79 --------~~~~~~~~v~~s~dg~~l~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~ 148 (337)
T d1pbyb_ 79 --------ERVKSLFGAALSPDGKTLA-IYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSK 148 (337)
T ss_dssp --------EEEECTTCEEECTTSSEEE-EEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSC
T ss_pred --------ccccceeeEEEcCCCcEEE-EeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCE
Confidence 0011235799999999998 4542211 12467899999989988887764 344688999999999
Q ss_pred EEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCC--------------------
Q 000992 237 IAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEE-------------------- 295 (1196)
Q Consensus 237 IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~-------------------- 295 (1196)
+++++.+ +.+|+.. +..... ++.+ .......++|++..+........
T Consensus 149 l~~~~~~--------~~~~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T d1pbyb_ 149 LYGLGRD--------LHVMDPEAGTLVED--KPIQ--SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp EEEESSS--------EEEEETTTTEEEEE--ECST--TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred EEEEcCC--------cceeeeecCcEEEE--eecC--CccccceecCCcceeeccccccceeeeeeeeeeeccceeeecc
Confidence 9998653 5667743 333332 2211 11112334555544332222110
Q ss_pred -cceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeec
Q 000992 296 -YDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPL 374 (1196)
Q Consensus 296 -~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l 374 (1196)
...+.+|+..+..+... ....+........++|++. .+.+. ++.+.+|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------------~~~~~-~~~i~v~d~ 267 (337)
T d1pbyb_ 217 YRTGLLTMDLETGEMAMR-EVRIMDVFYFSTAVNPAKT---------------------------RAFGA-YNVLESFDL 267 (337)
T ss_dssp EEEEEEEEETTTCCEEEE-EEEECSSCEEEEEECTTSS---------------------------EEEEE-ESEEEEEET
T ss_pred cCccEEEEEcCCCcEEEE-EecCCCcceEEEEecccce---------------------------EEEEc-cccEEEEEC
Confidence 00344444443322100 0000000112233333332 22222 245666655
Q ss_pred cccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 375 ~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
... .....+.++..+.+++||||| +.|++++.||+|.+||..+....
T Consensus 268 ~~~-----~~~~~~~~~~~~~~~~~s~dG--~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 268 EKN-----ASIKRVPLPHSYYSVNVSTDG--STVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TTT-----EEEEEEECSSCCCEEEECTTS--CEEEEESBSSEEEEEETTTCCEE
T ss_pred CCC-----cEEEEEcCCCCEEEEEECCCC--CEEEEEeCCCcEEEEECCCCcEE
Confidence 432 223455667788999999999 89999999999999999864433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.71 E-value=1.7e-14 Score=163.09 Aligned_cols=314 Identities=8% Similarity=-0.023 Sum_probs=188.9
Q ss_pred CCCEEEEEEccCCCEEEEEE-----CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeC----------Cc
Q 000992 75 GDSITAFDYLMEKEALIVGT-----SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG----------FG 138 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as-----~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~----------d~ 138 (1196)
.+.+.+++++|||+.+++.. ..++|.+||..++++. .+.. +....++|||||++|++++. ++
T Consensus 20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~--~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--GFLPNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC--CCCccEEEcCCCCEEEEEeecCCcccccccce
Confidence 35688899999999998752 3467899999887653 2221 22347999999999999864 46
Q ss_pred eEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE
Q 000992 139 QILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS 217 (1196)
Q Consensus 139 tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~ 217 (1196)
+|.+|+ ....++.....+... ...+ ......+.|++||++++ +...+ .+..+.+|+..+++....
T Consensus 98 ~v~v~D~~t~~~~~~~~~~~~~-~~~~--------~~~~~~~~~s~dg~~~~-v~~~~----~~~~~~~~~~~~~~~~~~ 163 (373)
T d2madh_ 98 YVEVFDPVTFLPIADIELPDAP-RFDV--------GPYSWMNANTPNNADLL-FFQFA----AGPAVGLVVQGGSSDDQL 163 (373)
T ss_pred EEEEEECCCCcEEEEEecCCcc-eeEe--------ccCCCcEEEEeCCCcEE-EEEEc----CCCceEEeeccCCeEEEE
Confidence 788875 334444443332221 0000 01124689999999887 55443 357899999966665544
Q ss_pred eccCCCceeEEEEcCCCCeE-EEEecCCCCCCCCeEEEEeCCCeeEEE-EEec---cCCCCcEEEEEEccCCCeeEEEEc
Q 000992 218 SELKAFMGAVLEWMPSGANI-AAVYDRKSENKCPSIVFYERNGLERSS-FDIN---EQIDSTVELLKWNCMSDLLAAVVR 292 (1196)
Q Consensus 218 ~e~~~~~v~slawsPdG~~I-As~s~d~~~~~~~~V~~~e~nGl~~~~-f~l~---~~~~~~V~~laWSpDg~~LAs~~~ 292 (1196)
.. ....++|+|+|+.+ ++.+.+ ..+.+|+..+..... .... .........+.+++++..++...
T Consensus 164 ~~----~~~~~~~s~~g~~~~v~~~~d------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 232 (373)
T d2madh_ 164 LS----SPTCYHIHPGAPSTFYLLCAQ------GGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY- 232 (373)
T ss_pred ec----cceeEEEecCCCcEEEEEcCC------CeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecC-
Confidence 32 34678999999866 455554 468888855433222 1111 11122355678888887776653
Q ss_pred cCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEe
Q 000992 293 FEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVT 372 (1196)
Q Consensus 293 d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt 372 (1196)
++ .+.+|+..+........+...........|.|.... ...+..+|.... .....+...+....++.+.++
T Consensus 233 ~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~-----~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 233 SG---KILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ-QVAYLKSSDGIY-----LLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred Cc---eEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcce-eeEEecCCCeEE-----EecCCCceEEeecCCCeEEEE
Confidence 44 699999887654333333222122244556665443 333343443221 111122223344455566666
Q ss_pred eccccCCCCCceeeeecCCCCEEEEEEecCCCCC--EEEEEECCCcEEEEeCCCCCccccc
Q 000992 373 PLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN--CLAAILSDGCLCVVDLPAPDMLEDL 431 (1196)
Q Consensus 373 ~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~--~lAs~~~dg~v~lw~~~~~~~~~~~ 431 (1196)
+.... .....+.+...+.+++||||| + .+++++.|++|++||..+......+
T Consensus 304 d~~t~-----~~~~~~~~~~~~~~~a~spDG--~~~l~vt~~~d~~v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 304 TGLVG-----QTSSQISLGHDVDAISVAQDG--GPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCC-----cEEEEecCCCCeeEEEECCCC--CEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 55322 223456677889999999999 6 3578889999999999876555443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=1.6e-15 Score=167.92 Aligned_cols=281 Identities=13% Similarity=0.047 Sum_probs=167.1
Q ss_pred EEEEECCCcEEEEECCC-CeEEEee--eecCcEEEEEECCCCCEEEEEe-CCceEEEEeccCc-eeeeeecccccCcccc
Q 000992 90 LIVGTSSGLLLLHSVDG-NATEVVG--RVEGGVRFISPSPDGDLLGVTT-GFGQILVMTHDWD-LLYENPLEELAEGFDV 164 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~-~~~e~vg--~~~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~~d-~~~~~~l~~~~~~~~V 164 (1196)
+++++.|++|++|++++ +.++.+. .+.+.|..++|||||++|++++ .|++|.+|+.+-+ ...+...+.
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~------- 79 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES------- 79 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-------
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-------
Confidence 35666899999999864 3333222 3578899999999999996555 5899999863311 111111110
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEE--eccCCCceeEEEEcCCCCeEEEEec
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQAS--SELKAFMGAVLEWMPSGANIAAVYD 242 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~--~e~~~~~v~slawsPdG~~IAs~s~ 242 (1196)
.+......++|+|||++++ +++. .++++++|+...+..... ...+...+.++.++|||+.+++++.
T Consensus 80 ------~~~~~p~~l~~spDg~~l~-v~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~ 147 (333)
T d1ri6a_ 80 ------ALPGSLTHISTDHQGQFVF-VGSY-----NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL 147 (333)
T ss_dssp ------ECSSCCSEEEECTTSSEEE-EEET-----TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG
T ss_pred ------ccCCCceEEEEcCCCCEEe-eccc-----CCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc
Confidence 0112346799999999998 6653 367999998855443332 2335556789999999999998887
Q ss_pred CCCCCCCCeEEEEeCCCe--eEEEE--EeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEE--EEEEEEE
Q 000992 243 RKSENKCPSIVFYERNGL--ERSSF--DINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHW--YLKYEIR 316 (1196)
Q Consensus 243 d~~~~~~~~V~~~e~nGl--~~~~f--~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~w--ylkq~l~ 316 (1196)
. ...|..|+.... ..... ............++|++++..+........ ...+|+.....+ ...+.+.
T Consensus 148 ~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 148 K-----QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS--SVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp G-----GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT--EEEEEESSCTTSCCEEEEEEE
T ss_pred c-----cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC--ceEEEeecccccceeeeeeee
Confidence 5 346777774321 11111 111222345789999999999888776542 566676553322 2223332
Q ss_pred EecC------CcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecC
Q 000992 317 YLRR------DGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKF 390 (1196)
Q Consensus 317 ~~~~------~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~ 390 (1196)
.... ......++|++...+......+.+. .|.... ++..+.+.. ....
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~-------------~~~~ 274 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLIT----VFSVSE---------DGSVLSKEG-------------FQPT 274 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEE----EEEECT---------TSCCEEEEE-------------EEEC
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEE----EEEEcC---------CCCEEEEEE-------------EeCC
Confidence 2111 1145677777765333332233222 122111 111111111 1123
Q ss_pred CCCEEEEEEecCCCCCEEEEEEC-CCcEEEEeCCC
Q 000992 391 PTAVTEMAFYSKSSKNCLAAILS-DGCLCVVDLPA 424 (1196)
Q Consensus 391 ~~~V~~Vafspdg~~~~lAs~~~-dg~v~lw~~~~ 424 (1196)
...+.+++||||| +.|++++. +++|.+|+++.
T Consensus 275 ~~~p~~~a~spDG--k~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 275 ETQPRGFNVDHSG--KYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp SSSCCCEEECTTS--SEEEEECTTTCEEEEEEEET
T ss_pred CCCeeEEEEeCCC--CEEEEEECCCCeEEEEEEEC
Confidence 3456789999999 88777654 58999997753
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.6e-15 Score=158.39 Aligned_cols=268 Identities=9% Similarity=0.007 Sum_probs=177.0
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++ +++++.|++++.|+.|..||+ .+++. +.+ +.+| .+.|++|+| +++.|++|+.||+|++
T Consensus 17 ~V~c~--~~d~~~l~sgs~Dg~i~vWd~--~~~~~---~~~----l~~H----~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 17 GVYCL--QYDDQKIVSGLRDNTIKIWDK--NTLEC---KRI----LTGH----TGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CEEEE--ECCSSEEEEEESSSCEEEEES--SSCCE---EEE----ECCC----SSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred CEEEE--EEcCCEEEEEeCCCeEEEEEC--CCCcE---EEE----EecC----CCCEeeeec--ccceeecccccccccc
Confidence 45555 456899999999999999999 44443 222 4444 468999876 7889999999999999
Q ss_pred EECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEE
Q 000992 102 HSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISW 181 (1196)
Q Consensus 102 w~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isW 181 (1196)
|+..++........ .......+.+....+++++.++.+.+|+..-....... . .+..|...+..+.|
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~v~~~~~ 146 (293)
T d1p22a2 80 WDVNTGEMLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR-R-----------VLVGHRAAVNVVDF 146 (293)
T ss_dssp EESSSCCEEEEECC-CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEE-E-----------EECCCSSCEEEEEE
T ss_pred cccccccccccccc-cccccccccccccceeecccccceeEeecccccccccc-c-----------ccccccccccccee
Confidence 99988765433222 22334456677789999999999999863211110000 0 01134455677777
Q ss_pred ccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee
Q 000992 182 RGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE 261 (1196)
Q Consensus 182 spDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~ 261 (1196)
.++. ++ +++ .|++|++||..++++...+.++...+..++|+ +..+++++.|+ .|++|+.....
T Consensus 147 ~~~~--~~-~~s------~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg------~i~i~d~~~~~ 209 (293)
T d1p22a2 147 DDKY--IV-SAS------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN------TIRLWDIECGA 209 (293)
T ss_dssp ETTE--EE-EEE------TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTS------CEEEEETTTCC
T ss_pred cccc--cc-ccc------CCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCC------EEEEEecccce
Confidence 6654 44 333 46999999999999999988888777776665 56899988864 69999965432
Q ss_pred EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCC-------EEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 262 RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNN-------HWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 262 ~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~-------~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
.- ..... +...|. .+++++..||+++.|+ +|++|++... .+...+.+..|......+.|++. .
T Consensus 210 ~~-~~~~~-~~~~v~--~~~~~~~~l~sg~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~~---~ 279 (293)
T d1p22a2 210 CL-RVLEG-HEELVR--CIRFDNKRIVSGAYDG---KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---Q 279 (293)
T ss_dssp EE-EEECC-CSSCEE--EEECCSSEEEEEETTS---CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSS---C
T ss_pred ee-eeecc-cceeee--eccccceEEEEEcCCC---EEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcCC---E
Confidence 21 12222 233343 5788999999999999 9999997521 11123444444433466777642 3
Q ss_pred EEEEecCCcEEE
Q 000992 335 LICWTLDGQITT 346 (1196)
Q Consensus 335 L~~~~~~g~~~~ 346 (1196)
|..++.||.+.+
T Consensus 280 l~s~s~Dg~i~i 291 (293)
T d1p22a2 280 IVSSSHDDTILI 291 (293)
T ss_dssp EEECCSSSEEEE
T ss_pred EEEEecCCEEEE
Confidence 566656666543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=1.1e-14 Score=160.61 Aligned_cols=251 Identities=7% Similarity=-0.016 Sum_probs=152.1
Q ss_pred CEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcEEEEECCCCeEE-
Q 000992 33 NRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLLLLHSVDGNATE- 110 (1196)
Q Consensus 33 ~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I~lw~~~~~~~e- 110 (1196)
+.+++++.|++|..||+ .+.+. +.+++. ... +..+.+++|+|||+.|+ +++.+|.|.+||..++++.
T Consensus 2 ~~~vt~~~d~~v~v~D~--~s~~~---~~~i~~--~~~----~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~ 70 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDT--EKMAV---DKVITI--ADA----GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEET--TTTEE---EEEEEC--TTC----TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred eEEEEEcCCCEEEEEEC--CCCeE---EEEEEC--CCC----CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE
Confidence 45778888999999999 55544 222221 111 34578899999999885 5567999999999987653
Q ss_pred Eeeee-----cCcEEEEEECCCCCEEEEEeCCceEEEEecc-CceeeeeecccccCccccccCccccCCCCeEEEEEccC
Q 000992 111 VVGRV-----EGGVRFISPSPDGDLLGVTTGFGQILVMTHD-WDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGD 184 (1196)
Q Consensus 111 ~vg~~-----~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~-~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspD 184 (1196)
.+..+ ...+..++|||||+.++++..+.....|... ++.... .+.... ...+. .+ .....+..++|+||
T Consensus 71 ~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~-~~d~~~-~~~~~--~~-~~~~~~~~~~~s~d 145 (337)
T d1pbyb_ 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA-LYDAET-LSRRK--AF-EAPRQITMLAWARD 145 (337)
T ss_dssp EEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE-EEETTT-TEEEE--EE-ECCSSCCCEEECTT
T ss_pred EEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccccee-eccccC-CeEEE--ec-cccCCceEEEEcCC
Confidence 22211 2235579999999999998765444322100 000000 000000 00000 00 11234567899999
Q ss_pred CceEEEeeccccc---------------------------------------------------------cCCCCEEEEE
Q 000992 185 GKYFATLSEFCNS---------------------------------------------------------SKLHKRLKVW 207 (1196)
Q Consensus 185 G~~lAsvss~d~~---------------------------------------------------------~~~d~~irVW 207 (1196)
|++++ +++.+.. ...+..+.+|
T Consensus 146 g~~l~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (337)
T d1pbyb_ 146 GSKLY-GLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp SSCEE-EESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred CCEEE-EEcCCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEE
Confidence 99888 5541100 0001124555
Q ss_pred ECCCCcEEEE-eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCC
Q 000992 208 ERDSGTLQAS-SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSD 285 (1196)
Q Consensus 208 d~~~G~l~~~-~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~ 285 (1196)
+..+|..... ..++......++++|++.+++++.. .|.+|+.. +..... +. ....+.+++|||||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~v~d~~~~~~~~~--~~--~~~~~~~~~~s~dG~ 292 (337)
T d1pbyb_ 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYN--------VLESFDLEKNASIKR--VP--LPHSYYSVNVSTDGS 292 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEES--------EEEEEETTTTEEEEE--EE--CSSCCCEEEECTTSC
T ss_pred EcCCCcEEEEEecCCCcceEEEEecccceEEEEccc--------cEEEEECCCCcEEEE--Ec--CCCCEEEEEECCCCC
Confidence 5545544332 2344555677889999998887643 69999965 333332 22 234688999999999
Q ss_pred eeEEEEccCCcceEEEEEecCCEEEEEEEEEE
Q 000992 286 LLAAVVRFEEYDSVKICFFSNNHWYLKYEIRY 317 (1196)
Q Consensus 286 ~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~ 317 (1196)
.|++++.++ +|++||..+.. ...++..
T Consensus 293 ~l~v~~~~~---~i~v~D~~t~~--~v~~i~~ 319 (337)
T d1pbyb_ 293 TVWLGGALG---DLAAYDAETLE--KKGQVDL 319 (337)
T ss_dssp EEEEESBSS---EEEEEETTTCC--EEEEEEC
T ss_pred EEEEEeCCC---cEEEEECCCCc--EEEEEEC
Confidence 999999988 89999998864 2344544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=7.3e-14 Score=154.34 Aligned_cols=275 Identities=12% Similarity=0.059 Sum_probs=165.8
Q ss_pred CEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-CCCcEEEEECCCC--e
Q 000992 33 NRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT-SSGLLLLHSVDGN--A 108 (1196)
Q Consensus 33 ~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as-~dG~I~lw~~~~~--~ 108 (1196)
..||+++ ++++|+.|+++ ..+.. ..+.+ ..+ .+.|.+|+|||||+.|.++. .||.|.+|+.++. .
T Consensus 4 ~~v~v~~~~~~~I~v~~~~-~~~~l-~~~~~-----~~~----~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~ 72 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLN-HEGAL-TLTQV-----VDV----PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA 72 (333)
T ss_dssp EEEEEEEGGGTEEEEEEEC-TTSCE-EEEEE-----EEC----SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred eEEEEECCCCCcEEEEEEc-CCCCe-EEEEE-----EcC----CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence 3577765 68889999983 22221 11211 111 35789999999999996555 5899999998653 3
Q ss_pred EEEeeee--cCcEEEEEECCCCCEEEEEeC-CceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCC
Q 000992 109 TEVVGRV--EGGVRFISPSPDGDLLGVTTG-FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDG 185 (1196)
Q Consensus 109 ~e~vg~~--~~~I~~~awSPDg~~LA~~s~-d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG 185 (1196)
.+..++. ...+..++|||||++|++++. +++|.+|.............. .+...+.++.++|||
T Consensus 73 ~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~~~~~~v~~s~d~ 139 (333)
T d1ri6a_ 73 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-------------EGLDGCHSANISPDN 139 (333)
T ss_dssp EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-------------CCCTTBCCCEECTTS
T ss_pred EEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceeccccc-------------CCCccceEEEeeecc
Confidence 4444332 345778999999999999985 667877754332222111100 122345688999999
Q ss_pred ceEEEeeccccccCCCCEEEEEECCCCcEEEE------eccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-
Q 000992 186 KYFATLSEFCNSSKLHKRLKVWERDSGTLQAS------SELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN- 258 (1196)
Q Consensus 186 ~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~------~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n- 258 (1196)
++++ ++.. .+..|++|+..++..... ..........++|+|+|..+....... ....++..+
T Consensus 140 ~~~~-~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~-----~~~~v~~~~~ 208 (333)
T d1ri6a_ 140 RTLW-VPAL-----KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN-----SSVDVWELKD 208 (333)
T ss_dssp SEEE-EEEG-----GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEESSC
T ss_pred eeee-cccc-----ccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc-----CceEEEeecc
Confidence 9988 5553 357899998754322211 122333457899999999988776543 345555432
Q ss_pred -Ce-eEEEEEec-c----CCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEec-CCcEEEEEccC
Q 000992 259 -GL-ERSSFDIN-E----QIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLR-RDGIRFMWHPT 330 (1196)
Q Consensus 259 -Gl-~~~~f~l~-~----~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~-~~~~~v~Wsp~ 330 (1196)
.. ......+. . ........++++|||+++....... +++.+|......-.++..-.... ..+..+.|+|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spD 286 (333)
T d1ri6a_ 209 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA--SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS 286 (333)
T ss_dssp TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred cccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC--CeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCC
Confidence 11 11111121 1 1224577899999999887766543 37999998743221221111111 22367899999
Q ss_pred CCceEEEEec-CCcEE
Q 000992 331 KPLQLICWTL-DGQIT 345 (1196)
Q Consensus 331 ~~~~L~~~~~-~g~~~ 345 (1196)
|.. |.+... ++++.
T Consensus 287 Gk~-l~va~~~~~~v~ 301 (333)
T d1ri6a_ 287 GKY-LIAAGQKSHHIS 301 (333)
T ss_dssp SSE-EEEECTTTCEEE
T ss_pred CCE-EEEEECCCCeEE
Confidence 976 555543 35444
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=1.9e-14 Score=161.16 Aligned_cols=303 Identities=10% Similarity=0.041 Sum_probs=175.6
Q ss_pred EEccCCCEEEEEE-----CCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEe----------CCceEEEEe-
Q 000992 82 DYLMEKEALIVGT-----SSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTT----------GFGQILVMT- 144 (1196)
Q Consensus 82 ~~spd~~~La~as-----~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s----------~d~tV~l~~- 144 (1196)
+.+|||+.+.++. .+++|.+||..++++. .+.. +.+..++|||||++|++++ .|+.|.+|+
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~--g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC--CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 4589999998763 4567999999988653 3322 3344789999999998865 367899986
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCC--
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKA-- 222 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~-- 222 (1196)
..+.++.+....... ...+ ......++|+|||++++ +.+. ..+..+++|+..+|+...+.....
T Consensus 86 ~t~~~~~~~~~~~~~-~~~~--------~~~~~~~~~s~dg~~~~-v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
T d2bbkh_ 86 VTLLPTADIELPDAP-RFLV--------GTYPWMTSLTPDGKTLL-FYQF----SPAPAVGVVDLEGKAFKRMLDVPDCY 151 (355)
T ss_dssp TTCCEEEEEEETTCC-CCCB--------SCCGGGEEECTTSSEEE-EEEC----SSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred CCCCEEEEEecCCcc-eeec--------CCCCceEEEecCCCeeE-EecC----CCCceeeeeecCCCcEeeEEecCCcc
Confidence 345555544433221 0111 12235689999999988 5543 245789999998998887654322
Q ss_pred -----CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcc
Q 000992 223 -----FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYD 297 (1196)
Q Consensus 223 -----~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~ 297 (1196)
+....++++|||+.+.....+. ..+.+++.... .......+...+|++++..++.++.++
T Consensus 152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~-----~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 216 (355)
T d2bbkh_ 152 HIFPTAPDTFFMHCRDGSLAKVAFGTE-----GTPEITHTEVF-------HPEDEFLINHPAYSQKAGRLVWPTYTG--- 216 (355)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSS-----SCCEEEECCCC-------SCTTSCBCSCCEEETTTTEEEEEBTTS---
T ss_pred eEeecCCcceEEEcCCCCEEEEEecCC-----CeEEEEecccc-------cceecceeeeccccCCCCeEEEecCCC---
Confidence 1235678999999887765542 23433432211 111123456678999999999988888
Q ss_pred eEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeee---cCCCeeEEEEcCCEEEEeec
Q 000992 298 SVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTA---VMENSTALVIDGSKILVTPL 374 (1196)
Q Consensus 298 ~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~---~~d~~~v~viDg~~l~lt~l 374 (1196)
.+.+|+.....-........+........|.|.+... ...+.+|........-... ......+.++| .
T Consensus 217 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d--------~ 287 (355)
T d2bbkh_ 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ-VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD--------A 287 (355)
T ss_dssp EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC-EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEE--------T
T ss_pred eEEEEecCCCcEEEEeccCCcccceEeeeeeccceEE-EEEeCCCCeEEEEeccCCceeecCCCCeEEEEe--------C
Confidence 8999998764321111111000000223344444332 2233344332111110000 11112333333 3
Q ss_pred cccCCCCCceeeeecCCCCEEEEEEecCCCCC--EEEEEECCCcEEEEeCCCCCccccc
Q 000992 375 SLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKN--CLAAILSDGCLCVVDLPAPDMLEDL 431 (1196)
Q Consensus 375 ~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~--~lAs~~~dg~v~lw~~~~~~~~~~~ 431 (1196)
... ....++.+...+.+++||||| + .++++..|++|.+||..+......+
T Consensus 288 ~t~-----~~~~~~~~~~~~~~~a~spDG--~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 288 KTG-----ERLAKFEMGHEIDSINVSQDE--KPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp TTC-----CEEEEEEEEEEECEEEECCSS--SCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCC-----cEEEEecCCCCEEEEEEcCCC--CeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 211 111234445567899999999 5 3566677999999999876544333
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.60 E-value=4.4e-14 Score=156.29 Aligned_cols=284 Identities=8% Similarity=-0.056 Sum_probs=172.1
Q ss_pred EeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEE-EEECCCcEEEEEC
Q 000992 26 SALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALI-VGTSSGLLLLHSV 104 (1196)
Q Consensus 26 ~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La-~as~dG~I~lw~~ 104 (1196)
+|+.++++.+++++.+++|..||+ .+++. +. .+.+..+..+.+++|+|||+.|. +++.+|.|.+||.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~--~t~~~---~~-------t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~ 69 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDV--ASDTV---YK-------SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEET--TTTEE---EE-------EEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred ccCCCCCcEEEEEcCCCEEEEEEC--CCCCE---EE-------EEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeC
Confidence 578899999999999999999999 55554 11 11111134678999999999875 5557899999999
Q ss_pred CCCeEE-E--eee----ecCcEEEEEECCCCCEEEEEeCCceEEEEec-cCce-eeeeecccccCccccccCccccCCCC
Q 000992 105 DGNATE-V--VGR----VEGGVRFISPSPDGDLLGVTTGFGQILVMTH-DWDL-LYENPLEELAEGFDVHEPELSSSFSF 175 (1196)
Q Consensus 105 ~~~~~e-~--vg~----~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~-~~d~-~~~~~l~~~~~~~~Vs~tqf~~~~~~ 175 (1196)
.+++.. . .+. +...+..++|||||+.|++++.+.....+.. ..+. +....... .+.+...........
T Consensus 70 ~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~ 146 (346)
T d1jmxb_ 70 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD---GLEAKPVRTFPMPRQ 146 (346)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG---GGGBCCSEEEECCSS
T ss_pred ccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc---ceeeeEEEeeeccCc
Confidence 987542 1 111 1224567999999999988875433321100 0000 00000000 000000000112234
Q ss_pred eEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC----------
Q 000992 176 KSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS---------- 245 (1196)
Q Consensus 176 v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~---------- 245 (1196)
+..+.+++||+.++ .+ ..+.+|+..+++...+...+ .....++|+|+|..+........
T Consensus 147 ~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (346)
T d1jmxb_ 147 VYLMRAADDGSLYV-AG---------PDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215 (346)
T ss_dssp CCCEEECTTSCEEE-ES---------SSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred eEEEEecCCCEEEE-eC---------CcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeee
Confidence 56688899998777 33 35889999899988877643 33467788898887644332210
Q ss_pred ----------CCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 246 ----------ENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 246 ----------~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
......+..|+.. |...... + .++...+..+.++|++..++....+ .|.+|+..+.+. ...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~----~v~v~d~~~~~~--~~~ 287 (346)
T d1jmxb_ 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQE-F-ADLTELYFTGLRSPKDPNQIYGVLN----RLAKYDLKQRKL--IKA 287 (346)
T ss_dssp C-------CCCEEEEEEEEEETTTCCEEEEE-E-EECSSCEEEEEECSSCTTEEEEEES----EEEEEETTTTEE--EEE
T ss_pred eccCceeEeeccCCceEEEEECCCCceEEEE-e-ecccceeEEEEEeCCCCEEEEecCC----eEEEEECCCCcE--EEE
Confidence 0001234444432 2111111 1 1234568899999999999988776 499999988763 222
Q ss_pred EEEecCCcEEEEEccCCCceEEEEecCCcEE
Q 000992 315 IRYLRRDGIRFMWHPTKPLQLICWTLDGQIT 345 (1196)
Q Consensus 315 l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~ 345 (1196)
+.. ......+.||||+.. |+++..+|.+.
T Consensus 288 ~~~-~~~~~~va~s~DG~~-l~v~~~d~~v~ 316 (346)
T d1jmxb_ 288 ANL-DHTYYCVAFDKKGDK-LYLGGTFNDLA 316 (346)
T ss_dssp EEC-SSCCCEEEECSSSSC-EEEESBSSEEE
T ss_pred EcC-CCCEEEEEEcCCCCE-EEEEeCCCcEE
Confidence 321 123478999999875 77777677654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.54 E-value=3.1e-12 Score=144.18 Aligned_cols=164 Identities=15% Similarity=0.040 Sum_probs=110.2
Q ss_pred eeecCcEEEEEECCCCCEEEEEe-----CCceEEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCc
Q 000992 113 GRVEGGVRFISPSPDGDLLGVTT-----GFGQILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGK 186 (1196)
Q Consensus 113 g~~~~~I~~~awSPDg~~LA~~s-----~d~tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~ 186 (1196)
+.+++.+.+++|||||+.+++.. ..+.|.+|+ ..++.+.++..+ ....++|||||+
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~------------------~~~~~a~SpDG~ 78 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG------------------FLPNPVAAHSGS 78 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC------------------CCccEEEcCCCC
Confidence 34578899999999999998763 234566654 334444433221 124699999999
Q ss_pred eEEEeeccccc----cCCCCEEEEEECCCCcEEEEeccCCCc-------eeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 187 YFATLSEFCNS----SKLHKRLKVWERDSGTLQASSELKAFM-------GAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 187 ~lAsvss~d~~----~~~d~~irVWd~~~G~l~~~~e~~~~~-------v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
+|+ +++.... ...++.|+|||..+|++......+... ...++|+|+|+.++....+. ...+.+|
T Consensus 79 ~l~-va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----~~~~~~~ 153 (373)
T d2madh_ 79 EFA-LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA----GPAVGLV 153 (373)
T ss_pred EEE-EEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC----CCceEEe
Confidence 999 5543211 124578999999999988776544332 25689999999888777654 3567778
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCee-EEEEccCCcceEEEEEecCCE
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLL-AAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~L-As~~~d~~~~~V~lW~~~n~~ 308 (1196)
+....... . ....+..++|+|+|+.+ ++.+.|+ ++.+|+..+..
T Consensus 154 ~~~~~~~~----~--~~~~~~~~~~s~~g~~~~v~~~~dg---~~~~~~~~~~~ 198 (373)
T d2madh_ 154 VQGGSSDD----Q--LLSSPTCYHIHPGAPSTFYLLCAQG---GLAKTDHAGGA 198 (373)
T ss_pred eccCCeEE----E--EeccceeEEEecCCCcEEEEEcCCC---eEEEEEcCCce
Confidence 76543211 1 11235688999999866 5666777 89999988654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=3e-13 Score=159.14 Aligned_cols=141 Identities=13% Similarity=0.112 Sum_probs=99.7
Q ss_pred EEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-Eeee-----ecCcEEEEEECCCCCEEEEEeCC---------ceEEE
Q 000992 78 ITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGR-----VEGGVRFISPSPDGDLLGVTTGF---------GQILV 142 (1196)
Q Consensus 78 v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~-----~~~~I~~~awSPDg~~LA~~s~d---------~tV~l 142 (1196)
-.++.|++|++.+. ..+|+|.+||..+++.. ++.. +..+|.+.+|||||+.||+++.. +.+.+
T Consensus 19 ~~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 19 LYSLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccCCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence 34688999998765 57899999999997654 3322 34679999999999999999753 33334
Q ss_pred EeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--
Q 000992 143 MTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL-- 220 (1196)
Q Consensus 143 ~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~-- 220 (1196)
|+.....+. ++..+.+.+..++|||||+++|+ .. ++.+.+|+..+|+.......
T Consensus 97 ~d~~~~~~~----------------~l~~~~~~~~~~~~SPDG~~ia~-~~-------~~~l~~~~~~~g~~~~~t~~~~ 152 (470)
T d2bgra1 97 YDLNKRQLI----------------TEERIPNNTQWVTWSPVGHKLAY-VW-------NNDIYVKIEPNLPSYRITWTGK 152 (470)
T ss_dssp EETTTTEEC----------------CSSCCCTTEEEEEECSSTTCEEE-EE-------TTEEEEESSTTSCCEECCSCCB
T ss_pred EECCCCccc----------------ccccCCccccccccccCcceeeE-ee-------cccceEEECCCCceeeeeeccC
Confidence 432211111 11244567899999999999995 32 47899999978876654321
Q ss_pred ----------------CCCceeEEEEcCCCCeEEEEecCC
Q 000992 221 ----------------KAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 221 ----------------~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
..+....+.|||||+.||+.+.|.
T Consensus 153 ~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred CCcccccccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 123346788999999999998764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=9.2e-12 Score=138.82 Aligned_cols=253 Identities=8% Similarity=-0.010 Sum_probs=153.7
Q ss_pred eeecCCCEEEEEeC-----CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE-------
Q 000992 27 ALDIEQNRLFFASS-----ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT------- 94 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as------- 94 (1196)
+.-+|+..+|+... +++++.||. .+++. +.+++.+ .+..++|||||+.|++++
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~--~tg~~---~~~~~~g----------~~~~~a~SpDg~~l~v~~~~~~~~~ 72 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDG--EAGRV---IGMIDGG----------FLPNPVVADDGSFIAHASTVFSRIA 72 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET--TTTEE---EEEEEEC----------SSCEEEECTTSSCEEEEEEEEEETT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEEC--CCCcE---EEEEECC----------CCCceEEcCCCCEEEEEeCCCcccc
Confidence 45688999988742 446999998 55543 2222222 334789999999998765
Q ss_pred ---CCCcEEEEECCCCeEE-Eeeee-------cCcEEEEEECCCCCEEEEEe--CCceEEEEec-cCceeeeeeccccc-
Q 000992 95 ---SSGLLLLHSVDGNATE-VVGRV-------EGGVRFISPSPDGDLLGVTT--GFGQILVMTH-DWDLLYENPLEELA- 159 (1196)
Q Consensus 95 ---~dG~I~lw~~~~~~~e-~vg~~-------~~~I~~~awSPDg~~LA~~s--~d~tV~l~~~-~~d~~~~~~l~~~~- 159 (1196)
.+|.|.+||..+++.. .+..+ ......++|||||+.+++++ .+..+.+|.. ....+.........
T Consensus 73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (355)
T d2bbkh_ 73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH 152 (355)
T ss_dssp EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE
T ss_pred ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce
Confidence 3789999999987653 22111 12234578999999998885 4556777753 22332222211100
Q ss_pred --------------Ccccc--c------------cCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCC
Q 000992 160 --------------EGFDV--H------------EPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDS 211 (1196)
Q Consensus 160 --------------~~~~V--s------------~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~ 211 (1196)
+++.+ . .+....+...+...+|++++..++ .++ .++.+.+|+...
T Consensus 153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~v~~~~~ 225 (355)
T d2bbkh_ 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV-WPT------YTGKIHQIDLSS 225 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE-EEB------TTSEEEEEECTT
T ss_pred EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEE-Eec------CCCeEEEEecCC
Confidence 01100 0 111112333445677888888877 443 358999999966
Q ss_pred CcEEEE--eccC----------CCceeEEEEcCCCCeEEEEecCCC----CCCCCeEEEEeCC-CeeEEEEEeccCCCCc
Q 000992 212 GTLQAS--SELK----------AFMGAVLEWMPSGANIAAVYDRKS----ENKCPSIVFYERN-GLERSSFDINEQIDST 274 (1196)
Q Consensus 212 G~l~~~--~e~~----------~~~v~slawsPdG~~IAs~s~d~~----~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~ 274 (1196)
+..... ...+ ......++++|+|+.++....+.. ......|.+|+.. |.....+.. ...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~----~~~ 301 (355)
T d2bbkh_ 226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHE 301 (355)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEE
T ss_pred CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC----CCC
Confidence 654321 1111 112356899999999877655422 1123568899854 444443322 235
Q ss_pred EEEEEEccCCCe--eEEEEccCCcceEEEEEecCCE
Q 000992 275 VELLKWNCMSDL--LAAVVRFEEYDSVKICFFSNNH 308 (1196)
Q Consensus 275 V~~laWSpDg~~--LAs~~~d~~~~~V~lW~~~n~~ 308 (1196)
+.+++|||||+. ++++..++ +|++||..+.+
T Consensus 302 ~~~~a~spDG~~~l~v~~~~d~---~i~v~D~~tg~ 334 (355)
T d2bbkh_ 302 IDSINVSQDEKPLLYALSTGDK---TLYIHDAESGE 334 (355)
T ss_dssp ECEEEECCSSSCEEEEEETTTT---EEEEEETTTCC
T ss_pred EEEEEEcCCCCeEEEEEECCCC---EEEEEECCCCC
Confidence 789999999984 34445566 89999998865
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.35 E-value=1.7e-10 Score=135.20 Aligned_cols=154 Identities=16% Similarity=0.148 Sum_probs=99.8
Q ss_pred EEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc--
Q 000992 120 RFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS-- 197 (1196)
Q Consensus 120 ~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~-- 197 (1196)
..+.|+|||+++. ..++++.+|+..-... ...+. ..+|..+...+.+++|||||++|| .++-...
T Consensus 20 ~~~~W~~d~~~~~--~~~~~~~~~~~~t~~~-~~~~~---------~~~~~~~~~~i~~~~~SpDg~~i~-~~~~~~~~~ 86 (470)
T d2bgra1 20 YSLRWISDHEYLY--KQENNILVFNAEYGNS-SVFLE---------NSTFDEFGHSINDYSISPDGQFIL-LEYNYVKQW 86 (470)
T ss_dssp CCCEECSSSEEEE--ESSSCEEEEETTTCCE-EEEEC---------TTTTTTSSSCCCEEEECTTSSEEE-EEEEEEECS
T ss_pred cCCEeCCCCEEEE--EcCCcEEEEECCCCCE-EEEEc---------hhhhhhccCccceeEECCCCCEEE-EEECCccee
Confidence 3578999999775 4677898886332111 11111 123445566789999999999999 4431100
Q ss_pred -cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccC------
Q 000992 198 -SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQ------ 270 (1196)
Q Consensus 198 -~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~------ 270 (1196)
-...+.+.|||..+|++ .....+.+.+..++|||||+.||.... ..+.+|+..|......+....
T Consensus 87 r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~~-------~~l~~~~~~~g~~~~~t~~~~~~~~~~ 158 (470)
T d2bgra1 87 RHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVWN-------NDIYVKIEPNLPSYRITWTGKEDIIYN 158 (470)
T ss_dssp SSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEET-------TEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred eeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEeec-------ccceEEECCCCceeeeeeccCCCcccc
Confidence 01246789999966664 446667788899999999999999765 357777755432211110000
Q ss_pred ----------CCCcEEEEEEccCCCeeEEEEccC
Q 000992 271 ----------IDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 271 ----------~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
..+....+.|||||+.||....|.
T Consensus 159 g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~ 192 (470)
T d2bgra1 159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND 192 (470)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC
T ss_pred cccceeeeeeecCCccccEECCCCCccceeEecC
Confidence 112345688999999999998764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=4.3e-10 Score=120.73 Aligned_cols=225 Identities=11% Similarity=0.008 Sum_probs=141.1
Q ss_pred CCEEEEEEccCCCEEEEEECCC---cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCc-eEEEEeccCceee
Q 000992 76 DSITAFDYLMEKEALIVGTSSG---LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG-QILVMTHDWDLLY 151 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG---~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~-tV~l~~~~~d~~~ 151 (1196)
..+.+-+|||||+.||..+..+ .+.+.+..++..+.+..+.+.+.+..|||||+.|+...... ...++........
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc
Confidence 4678899999999999876554 47777888877776666778899999999999999886532 2211111111000
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEc
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWM 231 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slaws 231 (1196)
..... ..........|+++++.+. ..+.. .+...|.+.+...+... ......+.....+|+
T Consensus 119 ~~~~~--------------~~~~~~~~~~~~~~~~~~~-~~~~~---~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~s 179 (269)
T d2hqsa1 119 IRQVT--------------DGRSNNTEPTWFPDSQNLA-FTSDQ---AGRPQVYKVNINGGAPQ-RITWEGSQNQDADVS 179 (269)
T ss_dssp EEECC--------------CCSSCEEEEEECTTSSEEE-EEECT---TSSCEEEEEETTSSCCE-ECCCSSSEEEEEEEC
T ss_pred ceeee--------------eccccccccccccccccce-ecccc---cCCceEeeeecccccce-eeecccccccccccc
Confidence 00000 1112335678899998776 33322 13456777888444333 333345666788999
Q ss_pred CCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEE
Q 000992 232 PSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYL 311 (1196)
Q Consensus 232 PdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wyl 311 (1196)
|+|+.|+..+.+.+ ...+.+.+..+.... .+. .........|||||+.||..+..+....+.+|++....
T Consensus 180 pdg~~~~~~~~~~~---~~~i~~~~~~~~~~~--~~~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~--- 249 (269)
T d2hqsa1 180 SDGKFMVMVSSNGG---QQHIAKQDLATGGVQ--VLS--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF--- 249 (269)
T ss_dssp TTSSEEEEEEECSS---CEEEEEEETTTCCEE--ECC--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC---
T ss_pred cccceeEEEeecCC---ceeeeEeecccccce--Eee--cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC---
Confidence 99999999887643 345656665543322 122 23456788999999999988876655578888887643
Q ss_pred EEEEEEecCCcEEEEEcc
Q 000992 312 KYEIRYLRRDGIRFMWHP 329 (1196)
Q Consensus 312 kq~l~~~~~~~~~v~Wsp 329 (1196)
...+...........|||
T Consensus 250 ~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 250 KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EEECCCSSSEEEEEEECC
T ss_pred EEEEeCCCCcEEeEEeCC
Confidence 112211111114567888
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=2.1e-11 Score=138.20 Aligned_cols=307 Identities=7% Similarity=-0.115 Sum_probs=158.3
Q ss_pred CCEEEEEEccCCCEEEEE---ECCCc--EEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeC----------Cce
Q 000992 76 DSITAFDYLMEKEALIVG---TSSGL--LLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTG----------FGQ 139 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~a---s~dG~--I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~----------d~t 139 (1196)
+....++..+|++...+. ..+|+ |.+||..++++. .+..+. ...++|||||++|++++. |++
T Consensus 20 g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~--~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~ 97 (368)
T d1mdah_ 20 GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF--LSLAVAGHSGSDFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp CCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT--TCEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred CCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC--CCcceECCCCCEEEEEcccCccccccccCCe
Confidence 344556678888865433 34555 556688887654 332222 235899999999998763 677
Q ss_pred EEEEe-ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe
Q 000992 140 ILVMT-HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 140 V~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~ 218 (1196)
|.+|+ ..+.++.+..++... . +. .......++|||||++++ ++.. .++++.+||..+++.....
T Consensus 98 v~v~D~~t~~~~~~i~~p~~~---~-----~~-~g~~p~~~a~SpDGk~l~-va~~-----~~~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 98 VEVFDPVTFLPIADIELPDAP---R-----FS-VGPRVHIIGNCASSACLL-FFLF-----GSSAAAGLSVPGASDDQLT 162 (368)
T ss_dssp EEEECTTTCCEEEEEEETTSC---S-----CC-BSCCTTSEEECTTSSCEE-EEEC-----SSSCEEEEEETTTEEEEEE
T ss_pred EEEEECCCCcEeeeecCCccc---e-----ec-ccCCccceEECCCCCEEE-EEeC-----CCCeEEEEECCCCcEeEEe
Confidence 98886 445555555543322 0 00 001124699999999998 6652 3579999999899888776
Q ss_pred ccCCC-------ceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEE
Q 000992 219 ELKAF-------MGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVV 291 (1196)
Q Consensus 219 e~~~~-------~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~ 291 (1196)
..+.. ....++++|||+++.....+.. ... ...... .. ......+....++++|..+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~----~~~-~~~~~~------~~-~~~~~~~~~~~~~~~g~~~~~~~ 230 (368)
T d1mdah_ 163 KSASCFHIHPGAAATHYLGSCPASLAASDLAAAP----AAA-GIVGAQ------CT-GAQNCSSQAAQANYPGMLVWAVA 230 (368)
T ss_dssp ECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC----CCC-EECCCC------SC-TTSCBCSCCEEETTTTEEEECBS
T ss_pred eccCcceEccCCCceEEEEcCCCCEEEEEecCCc----eee-eeeecc------cc-cccccceeecccccCcEEEEecC
Confidence 43322 2245677888887766654321 111 111100 00 11123345677888887665543
Q ss_pred ccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEE
Q 000992 292 RFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILV 371 (1196)
Q Consensus 292 ~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~l 371 (1196)
. .+.+++.....-.................|.|.+...+ ....++........ . .+ .+....+..+.+
T Consensus 231 ~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-a~~~~~~~~~v~~~---~-~~--~~~~~~~~~v~v 298 (368)
T d1mdah_ 231 S-----SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV-AKLKNTDGIMILTV---E-HS--RSCLAAAENTSS 298 (368)
T ss_dssp S-----CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE-EEETTTTEEEEEEE---E-CS--SCTTSCEEEEEE
T ss_pred C-----CEEEEeecCCceEEEeecccccceeeeeeecCCCceeE-EEcCCCCEEEEEec---C-CC--ceeecCCceEEE
Confidence 2 24555544321111000000000001122444443322 22223332111000 0 00 000001122333
Q ss_pred eeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEECCCcEEEEeCCCCCcc
Q 000992 372 TPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAILSDGCLCVVDLPAPDML 428 (1196)
Q Consensus 372 t~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~~dg~v~lw~~~~~~~~ 428 (1196)
++..... ...++.+...+.+++|||||....+++...|++|++||..+....
T Consensus 299 ~D~~t~~-----~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 299 VTASVGQ-----TSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EESSSCC-----EEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EECCCCc-----EeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 3332111 112334445678999999992113567778899999999765433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.8e-08 Score=107.63 Aligned_cols=206 Identities=16% Similarity=0.079 Sum_probs=123.1
Q ss_pred cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCc---eEEEEeccCceeeeeecccccCccccccCccccCCC
Q 000992 98 LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFG---QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFS 174 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~---tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~ 174 (1196)
+|.|.|.+++....+-.....+.+.+|||||+.||.++... .+.++........ .+. .+..
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--~~~--------------~~~~ 83 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--QVA--------------SFPR 83 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--EEE--------------CCSS
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--EEe--------------eeec
Confidence 47777888766554444467899999999999999987543 2333322211111 111 2234
Q ss_pred CeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 175 FKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
......|||||+.++. .+.. .+...+..+....+....... .........|+++++.+...+.... ...|..
T Consensus 84 ~~~~~~~spdg~~i~~-~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~~~i~~ 155 (269)
T d2hqsa1 84 HNGAPAFSPDGSKLAF-ALSK---TGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAFTSDQAG---RPQVYK 155 (269)
T ss_dssp CEEEEEECTTSSEEEE-EECT---TSSCEEEEEETTTCCEEECCC-CSSCEEEEEECTTSSEEEEEECTTS---SCEEEE
T ss_pred ccccceecCCCCeeeE-eeec---CCccceeecccccccceeeee-ccccccccccccccccceecccccC---CceEee
Confidence 5678999999999984 4322 123344445543444333332 3444467789999998877765432 456777
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCce
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQ 334 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~ 334 (1196)
.+.++....+ +. ..........|||||+.++..+.+.+...+.+.+...... .+...........|||+|...
T Consensus 156 ~~~~~~~~~~--~~-~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~p~~SPDG~~i 228 (269)
T d2hqsa1 156 VNINGGAPQR--IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLSSTFLDETPSLAPNGTMV 228 (269)
T ss_dssp EETTSSCCEE--CC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----EECCCSSSCEEEEECTTSSEE
T ss_pred eeccccccee--ee-cccccccccccccccceeEEEeecCCceeeeEeecccccc----eEeecCccccceEECCCCCEE
Confidence 7766544332 11 1234577889999999999988876444455555443221 111111122667899999763
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.12 E-value=1.5e-08 Score=114.96 Aligned_cols=254 Identities=11% Similarity=0.037 Sum_probs=144.2
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC---CCc
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS---SGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~---dG~ 98 (1196)
.+..+++++++..||+++.+. +..+..+...+.. .. ...+. ++.+..++++||++.+.++.. +|+
T Consensus 41 ~~s~la~s~d~~~ly~~~~~~-~~~~~i~~~~~~~--~~-------~~~~~--~~~p~~v~~~~~~~~~~v~~a~~~~~~ 108 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAMKK-WSSFAVKSPTEIV--HE-------ASHPI--GGHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBTE-EEEEEEEETTEEE--EE-------EEEEC--CSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCCEEEEcCCCCEEEEEeCCc-EEEEEEeCCCCeE--EE-------eeecC--CCCcEEEEECCCCCEEEEEEecCCCCE
Confidence 567799999999999997754 5555552111111 11 11111 234566777888875443332 345
Q ss_pred EEEEECC-------------CCeEE-Eeeee----cCcEEEEEECCCCCEEEEEe-CCceEEEEecc--Cceeeeeeccc
Q 000992 99 LLLHSVD-------------GNATE-VVGRV----EGGVRFISPSPDGDLLGVTT-GFGQILVMTHD--WDLLYENPLEE 157 (1196)
Q Consensus 99 I~lw~~~-------------~~~~e-~vg~~----~~~I~~~awSPDg~~LA~~s-~d~tV~l~~~~--~d~~~~~~l~~ 157 (1196)
|..+... ++.++ ....+ ...+.+++|||||++|.++. +.+.|.++... ...........
T Consensus 109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~ 188 (365)
T d1jofa_ 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA 188 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred EEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee
Confidence 5443321 11221 11111 12478999999999888885 34567665321 11110000000
Q ss_pred ccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEE--EEecc---------------
Q 000992 158 LAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQ--ASSEL--------------- 220 (1196)
Q Consensus 158 ~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~--~~~e~--------------- 220 (1196)
.....+-..++|+|||+++- ++. ..+++|.+|+.+.+... .....
T Consensus 189 ------------~~~g~gPr~i~f~pdg~~~y-v~~-----e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (365)
T d1jofa_ 189 ------------PDPGDHPRWVAMHPTGNYLY-ALM-----EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp ------------SSTTCCEEEEEECTTSSEEE-EEE-----TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred ------------cCCCCceEEEEECCCCceEE-Eec-----cCCCEEEEEEecCCCceEEEEeeeecccccccccccccc
Confidence 01124568899999999886 554 24689999998554322 11100
Q ss_pred --CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe--CCCeeEEEEEec-c-CCCCcEEEEEEcc-CCCeeEEEEcc
Q 000992 221 --KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE--RNGLERSSFDIN-E-QIDSTVELLKWNC-MSDLLAAVVRF 293 (1196)
Q Consensus 221 --~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~f~l~-~-~~~~~V~~laWSp-Dg~~LAs~~~d 293 (1196)
.......+.++|||++|.++.+..+......|..|. ..|.......+. . ......+.++++| ||++|+++..+
T Consensus 251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~ 330 (365)
T d1jofa_ 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC
Confidence 011235789999999998886643222244577776 344333322222 1 1123567899998 89999888654
Q ss_pred CCcceEEEEEecCC
Q 000992 294 EEYDSVKICFFSNN 307 (1196)
Q Consensus 294 ~~~~~V~lW~~~n~ 307 (1196)
. ++|.+|+++..
T Consensus 331 s--~~v~v~~~~~~ 342 (365)
T d1jofa_ 331 E--GWLEIYRWKDE 342 (365)
T ss_dssp S--CEEEEEEEETT
T ss_pred C--CeEEEEEEeCC
Confidence 3 48999998764
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.03 E-value=3.4e-09 Score=119.63 Aligned_cols=244 Identities=7% Similarity=-0.058 Sum_probs=142.1
Q ss_pred eEEeeecCCCEEEEEeC----------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE
Q 000992 24 QFSALDIEQNRLFFASS----------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG 93 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~----------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a 93 (1196)
...+|.+|+..||+.+. +..|..||. .+.+....+. +|..- .+..+.....++|||||+.|+++
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~--~t~~~~~~i~-~p~~~---~~~~g~~p~~~a~SpDGk~l~va 141 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP--VTFLPIADIE-LPDAP---RFSVGPRVHIIGNCASSACLLFF 141 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT--TTCCEEEEEE-ETTSC---SCCBSCCTTSEEECTTSSCEEEE
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEEC--CCCcEeeeec-CCccc---eecccCCccceEECCCCCEEEEE
Confidence 35789999999999863 445999998 5544322221 22110 11113345578999999999988
Q ss_pred E-CCCcEEEEECCCCeEE-Eeee-------ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcccc
Q 000992 94 T-SSGLLLLHSVDGNATE-VVGR-------VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV 164 (1196)
Q Consensus 94 s-~dG~I~lw~~~~~~~e-~vg~-------~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~V 164 (1196)
. .+|+|.+||..++++. .+.. +.+....+++||||+++.+...++....|.....
T Consensus 142 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~---------------- 205 (368)
T d1mdah_ 142 LFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ---------------- 205 (368)
T ss_dssp ECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC----------------
T ss_pred eCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc----------------
Confidence 6 5799999999987653 2211 1223344667777777766655544432211100
Q ss_pred ccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccC----------CCceeEEEEcC
Q 000992 165 HEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELK----------AFMGAVLEWMP 232 (1196)
Q Consensus 165 s~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~----------~~~v~slawsP 232 (1196)
.+.+++.......+.++|..+. ... +.+.+++...+...... ... .+....++++|
T Consensus 206 ---~~~~~~~~~~~~~~~~~g~~~~-~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~ 273 (368)
T d1mdah_ 206 ---CTGAQNCSSQAAQANYPGMLVW-AVA--------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp ---SCTTSCBCSCCEEETTTTEEEE-CBS--------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred ---cccccccceeecccccCcEEEE-ecC--------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence 0112223345688899998776 332 44556665333332211 110 11125689999
Q ss_pred CCCeEEEEecCCC---CCCCCeEEEEeCC-CeeEEEEEeccCCCCcEEEEEEccCCCe--eEEEEccCCcceEEEEEecC
Q 000992 233 SGANIAAVYDRKS---ENKCPSIVFYERN-GLERSSFDINEQIDSTVELLKWNCMSDL--LAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 233 dG~~IAs~s~d~~---~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V~~laWSpDg~~--LAs~~~d~~~~~V~lW~~~n 306 (1196)
+|..+........ ......|.+|+.. |..... +. ....+.+++|||||+. ++++..++ +|.+||..+
T Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~--~~--~~~~~~~~a~spDG~~~ly~s~~~~~---~v~v~D~~t 346 (368)
T d1mdah_ 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP--IS--NGHDSDAIIAAQDGASDNYANSAGTE---VLDIYDAAS 346 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC--CE--EEEEECEEEECCSSSCEEEEEETTTT---EEEEEESSS
T ss_pred CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEE--ec--CCCceeEEEECCCCCEEEEEEeCCCC---eEEEEECCC
Confidence 9998766543211 1112457788854 433322 11 2245889999999984 34555566 899999988
Q ss_pred CE
Q 000992 307 NH 308 (1196)
Q Consensus 307 ~~ 308 (1196)
.+
T Consensus 347 gk 348 (368)
T d1mdah_ 347 DQ 348 (368)
T ss_dssp CE
T ss_pred CC
Confidence 65
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.9e-08 Score=118.03 Aligned_cols=207 Identities=13% Similarity=0.108 Sum_probs=116.3
Q ss_pred EEEccCCCEEEEEECCCcEEEEECCCCeEEE-eeee---cCcEEEEEECCCCCEEEEEeCCc---------eEEEEeccC
Q 000992 81 FDYLMEKEALIVGTSSGLLLLHSVDGNATEV-VGRV---EGGVRFISPSPDGDLLGVTTGFG---------QILVMTHDW 147 (1196)
Q Consensus 81 v~~spd~~~La~as~dG~I~lw~~~~~~~e~-vg~~---~~~I~~~awSPDg~~LA~~s~d~---------tV~l~~~~~ 147 (1196)
..|++|++.+. -..+|.|.+||..+++-.+ +... .-.+....|||||+.|+.++.-. .+.+++...
T Consensus 22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 46999987654 3568899999998765432 2211 23577889999999999886432 222221110
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE-EeccCCCc--
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA-SSELKAFM-- 224 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~-~~e~~~~~-- 224 (1196)
. ....+.... ..+..+....|||||+.+|.+. ++.|.+.+..+|.... +..+..+.
T Consensus 101 ~--~~~~l~~~~-----------~~~~~l~~~~wSPDG~~iafv~--------~~nl~~~~~~~~~~~~lt~~g~~~~i~ 159 (465)
T d1xfda1 101 G--DPQSLDPPE-----------VSNAKLQYAGWGPKGQQLIFIF--------ENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (465)
T ss_dssp C--CCEECCCTT-----------CCSCCCSBCCBCSSTTCEEEEE--------TTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred C--ceeeccCcc-----------CCccccceeeeccCCceEEEEe--------cceEEEEecCCCceEEEecccCcceee
Confidence 0 001111110 1123345688999999999653 3667777775554433 33332221
Q ss_pred ---------------eeEEEEcCCCCeEEEEecCCCCCC----------------------------CCeEEEEeCCCee
Q 000992 225 ---------------GAVLEWMPSGANIAAVYDRKSENK----------------------------CPSIVFYERNGLE 261 (1196)
Q Consensus 225 ---------------v~slawsPdG~~IAs~s~d~~~~~----------------------------~~~V~~~e~nGl~ 261 (1196)
-..+-|||||+.||....|.+... ...+.+++.++..
T Consensus 160 nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~ 239 (465)
T d1xfda1 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (465)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred ccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCc
Confidence 257789999999999876532100 0123334433221
Q ss_pred EEEEEecc----CCCCcEEEEEEccCCCeeEEEEccCCc-ceEEEEEecCCEE
Q 000992 262 RSSFDINE----QIDSTVELLKWNCMSDLLAAVVRFEEY-DSVKICFFSNNHW 309 (1196)
Q Consensus 262 ~~~f~l~~----~~~~~V~~laWSpDg~~LAs~~~d~~~-~~V~lW~~~n~~w 309 (1196)
.....++. ..+.-+..+.|+|||++++......+. ..|.+++..+...
T Consensus 240 ~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~ 292 (465)
T d1xfda1 240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC 292 (465)
T ss_dssp CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE
T ss_pred EEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcE
Confidence 11111110 011236789999999977776553322 2577777777653
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=6.8e-08 Score=113.26 Aligned_cols=240 Identities=10% Similarity=0.106 Sum_probs=134.4
Q ss_pred eeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEE---------CCC
Q 000992 27 ALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGT---------SSG 97 (1196)
Q Consensus 27 ~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as---------~dG 97 (1196)
-|-++++.+|. ..++.|..|++ .+++...-+. ... + ..-.+.+..|||||+.|++++ ..|
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~--~~~~~~~l~~-----~~~--~-~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~ 91 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNV--ETNTSTVLIE-----GKK--I-ESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCG--GGCCCEEEEC-----TTT--T-TTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred EEeCCCcEEEE-eCCCcEEEEEC--CCCCEEEEEc-----Ccc--c-cccccceeEECCCCCeEEEEEcccceeEeeccc
Confidence 46677765554 33557999999 5554421111 111 1 122467788999999998874 357
Q ss_pred cEEEEECCCCeEEEeee---ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCcccc--------cc
Q 000992 98 LLLLHSVDGNATEVVGR---VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDV--------HE 166 (1196)
Q Consensus 98 ~I~lw~~~~~~~e~vg~---~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~V--------s~ 166 (1196)
.+.++|+.++....+.. ..+.+..+.|||||+.||.+.+. +|.+++..... ...+........| -+
T Consensus 92 ~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~-nl~~~~~~~~~--~~~lt~~g~~~~i~nG~~d~vye 168 (465)
T d1xfda1 92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-NIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYE 168 (465)
T ss_dssp EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-EEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHH
T ss_pred cEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecc-eEEEEecCCCc--eEEEecccCcceeeccccchhhh
Confidence 89999999876654322 23456679999999999999854 67665432221 1222211100111 01
Q ss_pred CccccCCCCeEEEEEccCCceEEEeeccccc-------------------------c---CCCCEEEEEECCCCcEEEEe
Q 000992 167 PELSSSFSFKSPISWRGDGKYFATLSEFCNS-------------------------S---KLHKRLKVWERDSGTLQASS 218 (1196)
Q Consensus 167 tqf~~~~~~v~~isWspDG~~lAsvss~d~~-------------------------~---~~d~~irVWd~~~G~l~~~~ 218 (1196)
..+. ..-..+-|||||++||+ ...|.. + ....++.|+|.+++......
T Consensus 169 ee~~---~~~~a~~WSPDgk~iaf-~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~ 244 (465)
T d1xfda1 169 EEIL---KTHIAHWWSPDGTRLAY-AAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (465)
T ss_dssp HTTS---SSSEEEEECTTSSEEEE-EEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred hhhc---cccceEEECCCCCeEEE-EEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEE
Confidence 1111 11256889999999994 433211 0 01124677888544433222
Q ss_pred cc------CCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCC-CeeEEEEEeccCCCCcE----EEEEEccCCCee
Q 000992 219 EL------KAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERN-GLERSSFDINEQIDSTV----ELLKWNCMSDLL 287 (1196)
Q Consensus 219 e~------~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~n-Gl~~~~f~l~~~~~~~V----~~laWSpDg~~L 287 (1196)
.+ .+..+..+.|+|+|++++...... .+...|.+++.. |.....+ ......+| ....|+|||+.+
T Consensus 245 ~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~--q~~~~i~~~d~~tg~~~~~~--~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRA--QNVSILTLCDATTGVCTKKH--EDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETT--SCEEEEEEEETTTCCEEEEE--EEECSSCCCCCCCCCEECTTSCSE
T ss_pred eccCcCccccceeeeeEEcCCCeEEEEEEccc--cccceEEEEcCCCCcEEEEE--EEcCCceEeccCCceeEccCCCee
Confidence 11 223457899999999776654421 123456677754 4332211 11112232 346899999866
Q ss_pred E
Q 000992 288 A 288 (1196)
Q Consensus 288 A 288 (1196)
+
T Consensus 321 ~ 321 (465)
T d1xfda1 321 F 321 (465)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.84 E-value=8.1e-07 Score=100.38 Aligned_cols=256 Identities=9% Similarity=-0.034 Sum_probs=136.7
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECC--CCeEEEeee-ecCcEEEEEECCCCCEEEEEe---CCceEEEEeccCce-
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVD--GNATEVVGR-VEGGVRFISPSPDGDLLGVTT---GFGQILVMTHDWDL- 149 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~--~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s---~d~tV~l~~~~~d~- 149 (1196)
.+..|+|+||++.|.++.. |.+..|..+ ++....... ..++...++++|||+.+.+++ +.++|..+....+.
T Consensus 41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~ 119 (365)
T d1jofa_ 41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence 4567999999999988764 567776554 433332221 223456788999999654433 34556443211111
Q ss_pred -eeeeeccccc-CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEEC-CCCcEEEEec----cCC
Q 000992 150 -LYENPLEELA-EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWER-DSGTLQASSE----LKA 222 (1196)
Q Consensus 150 -~~~~~l~~~~-~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~-~~G~l~~~~e----~~~ 222 (1196)
.....+.... ....+ ...-+.....+.++.|+|||+++. +... +..+|.+|+. .+|.+..... ...
T Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~q~~~h~h~v~~sPdG~~l~-v~d~-----g~d~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T d1jofa_ 120 YGNVFSVSETGKLEKNV-QNYEYQENTGIHGMVFDPTETYLY-SADL-----TANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp EEEEEEECTTCCEEEEE-EEEECCTTCCEEEEEECTTSSEEE-EEET-----TTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred cceeEeeeecceecCcc-cCcccCCCCcceEEEECCCCCEEE-EeeC-----CCCEEEEEEccCCCceeeccceeecCCC
Confidence 1111111000 00000 000001123467999999999988 5542 3457777753 2565543321 122
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee------EEEEEecc-----------CCCCcEEEEEEccCCC
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE------RSSFDINE-----------QIDSTVELLKWNCMSD 285 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~------~~~f~l~~-----------~~~~~V~~laWSpDg~ 285 (1196)
.....++|+|+|+++...... ..+|..|+.++.. ++...+-. ........|.+||||+
T Consensus 193 ~gPr~i~f~pdg~~~yv~~e~-----~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 267 (365)
T d1jofa_ 193 DHPRWVAMHPTGNYLYALMEA-----GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK 267 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS
T ss_pred CceEEEEECCCCceEEEeccC-----CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC
Confidence 335889999999998777664 3578888764321 11111110 0112366899999999
Q ss_pred eeEEEEccCC---cceEEEEEecCCEEEEEEEEEEe-c-C--CcEEEEEccCCCceEEEEec-CCcEE
Q 000992 286 LLAAVVRFEE---YDSVKICFFSNNHWYLKYEIRYL-R-R--DGIRFMWHPTKPLQLICWTL-DGQIT 345 (1196)
Q Consensus 286 ~LAs~~~d~~---~~~V~lW~~~n~~wylkq~l~~~-~-~--~~~~v~Wsp~~~~~L~~~~~-~g~~~ 345 (1196)
+|.++..... ...|-.|...+..-..+...... . . .+..+.++|..+..|.+..+ +|.+.
T Consensus 268 ~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~ 335 (365)
T d1jofa_ 268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLE 335 (365)
T ss_dssp EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEE
Confidence 9998865321 12466677654321111111111 1 1 12567888854444555543 45444
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.79 E-value=4.1e-06 Score=90.55 Aligned_cols=244 Identities=9% Similarity=0.042 Sum_probs=159.7
Q ss_pred ceeEEeeecCCCEEEEE-eCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE--ECCCc
Q 000992 22 ILQFSALDIEQNRLFFA-SSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG--TSSGL 98 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~-s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a--s~dG~ 98 (1196)
.+.++|+|++++ ||++ ..++.|..++.+ ++....+.+.... .+. ......+++.++....+++ +.++.
T Consensus 24 ~P~gvavd~dg~-i~VaD~~n~rI~v~d~~---G~~~~~~~~~~~~-~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~ 94 (279)
T d1q7fa_ 24 EPSGVAVNAQND-IIVADTNNHRIQIFDKE---GRFKFQFGECGKR-DSQ----LLYPNRVAVVRNSGDIIVTERSPTHQ 94 (279)
T ss_dssp CEEEEEECTTCC-EEEEEGGGTEEEEECTT---SCEEEEECCBSSS-TTC----BSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred CccEEEEcCCCC-EEEEECCCCEEEEEeCC---CCEEEEecccCCC-ccc----ccccccccccccccccceeccCCccc
Confidence 578999999877 6766 446678888872 1110111110000 001 1356777777765544443 34457
Q ss_pred EEEEECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 99 LLLHSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 99 I~lw~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|..++.++......+. .-.....++..++|.+++.....+.+.+++.+...+....... +.....
T Consensus 95 i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~--------------~~~~~~ 160 (279)
T d1q7fa_ 95 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSK--------------HLEFPN 160 (279)
T ss_dssp EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTT--------------TCSSEE
T ss_pred cccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccc--------------cccccc
Confidence 7778887765554432 2345788999999998888777788888777766655432211 123457
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec--cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE--LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e--~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
.++..++|..++ +.. ..+.|++||. +|+...+.- +.......|++.|+|+++++-+.. ...|.+|
T Consensus 161 ~i~~d~~g~i~v-~d~------~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-----~~~v~~f 227 (279)
T d1q7fa_ 161 GVVVNDKQEIFI-SDN------RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHN-----NFNLTIF 227 (279)
T ss_dssp EEEECSSSEEEE-EEG------GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSS-----SCEEEEE
T ss_pred eeeeccceeEEe-eec------cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCC-----CcEEEEE
Confidence 899999998877 443 3478999999 999887763 333446889999999987764332 2469999
Q ss_pred eCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecC
Q 000992 256 ERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSN 306 (1196)
Q Consensus 256 e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n 306 (1196)
+++|.....+..... ......|+..|||.+++ +..+. .|++|....
T Consensus 228 ~~~G~~~~~~~~~~~-~~~p~~vav~~dG~l~V-~~~n~---~v~~fr~~~ 273 (279)
T d1q7fa_ 228 TQDGQLISALESKVK-HAQCFDVALMDDGSVVL-ASKDY---RLYIYRYVQ 273 (279)
T ss_dssp CTTSCEEEEEEESSC-CSCEEEEEEETTTEEEE-EETTT---EEEEEECSC
T ss_pred CCCCCEEEEEeCCCC-CCCEeEEEEeCCCcEEE-EeCCC---eEEEEEeee
Confidence 999976665543322 23578999999998654 45555 899997654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.65 E-value=5.3e-07 Score=95.99 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=44.2
Q ss_pred EccC--CCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEe
Q 000992 83 YLME--KEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTT 135 (1196)
Q Consensus 83 ~spd--~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s 135 (1196)
.||| |+.+|..+ +|+|.+.|+++++...+....+.+...+|||||+.||..+
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~ 59 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRV 59 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEE
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEE
Confidence 5899 99999875 6789999999988876655577889999999999999875
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.62 E-value=1.1e-05 Score=89.17 Aligned_cols=231 Identities=11% Similarity=0.060 Sum_probs=141.3
Q ss_pred ceeEEeeecCCCEEEEEe-CCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEEC----C
Q 000992 22 ILQFSALDIEQNRLFFAS-SANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTS----S 96 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s-~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~----d 96 (1196)
.+.+.+||++++ ||++. ..+.|++|+. ..+... .+ +. .....+.+|++.|||+.+++... .
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p--~g~~~~-~~------~~----~~~~~p~gla~~~dG~l~va~~~~~~~~ 106 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINP--ETKEIK-RP------FV----SHKANPAAIKIHKDGRLFVCYLGDFKST 106 (319)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECT--TTCCEE-EE------EE----CSSSSEEEEEECTTSCEEEEECTTSSSC
T ss_pred CcEeCEECCCCC-EEEEECCCCEEEEEEC--CCCeEE-EE------Ee----CCCCCeeEEEECCCCCEEEEecCCCccc
Confidence 457899999987 77764 4778999998 444321 11 11 01346889999999988776543 2
Q ss_pred CcEEEEECCCCeEE-Eeeee--cCcEEEEEECCCCCEEEEEeCC------ceEEEEeccCceeeeeecccccCccccccC
Q 000992 97 GLLLLHSVDGNATE-VVGRV--EGGVRFISPSPDGDLLGVTTGF------GQILVMTHDWDLLYENPLEELAEGFDVHEP 167 (1196)
Q Consensus 97 G~I~lw~~~~~~~e-~vg~~--~~~I~~~awSPDg~~LA~~s~d------~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~t 167 (1196)
+.|...+..++.+. ..... ....+.+++.|||.+.++-... +.+..++.+...+.... .. +
T Consensus 107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~------~--- 176 (319)
T d2dg1a1 107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QN------I--- 176 (319)
T ss_dssp CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EE------E---
T ss_pred eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe-ec------c---
Confidence 34555666665544 22211 2347889999999876654321 22332222222111110 00 0
Q ss_pred ccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEEec-------cCCCceeEEEEcCCCCeEEE
Q 000992 168 ELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQASSE-------LKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 168 qf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~~e-------~~~~~v~slawsPdG~~IAs 239 (1196)
..-..|+|+|||+.|- ++. ...++|..|+.+ .|....... ...+.-..+++-++|++.++
T Consensus 177 ------~~pnGia~s~dg~~ly-vad-----~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va 244 (319)
T d2dg1a1 177 ------SVANGIALSTDEKVLW-VTE-----TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 244 (319)
T ss_dssp ------SSEEEEEECTTSSEEE-EEE-----GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE
T ss_pred ------ceeeeeeeccccceEE-Eec-----ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE
Confidence 1236799999998654 332 134788888753 343332211 11122367999999997766
Q ss_pred EecCCCCCCCCeEEEEeCCCeeEEEEEeccCC---CCcEEEEEEccCCCeeEEEEccC
Q 000992 240 VYDRKSENKCPSIVFYERNGLERSSFDINEQI---DSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~---~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
... ...|..|+++|....++.++... ...+.+++|.|++..|.+...+.
T Consensus 245 ~~~------~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 245 MYG------QGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp EET------TTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EcC------CCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCC
Confidence 544 35799999999888877776321 23578999999998887776553
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.60 E-value=3.6e-06 Score=90.00 Aligned_cols=236 Identities=8% Similarity=-0.059 Sum_probs=138.2
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLL 100 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~ 100 (1196)
.+.++|+|++++..++... .+.|..++.. .... .. +. +.....+.+|+++++|...++...++.|+
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~--~~~~--~~------~~---~~~~~~p~gvav~~~g~i~v~d~~~~~i~ 81 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG--STGT--TV------LP---FNGLYQPQGLAVDGAGTVYVTDFNNRVVT 81 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC------CE--EE------CC---CCSCCSCCCEEECTTCCEEEEETTTEEEE
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCC--CceE--EE------ec---cCCccCceEEEEcCCCCEEEeeeeeceee
Confidence 4688999999884443333 4567777662 2211 01 00 11124577899999998777666655555
Q ss_pred EEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 101 LHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 101 lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
+++..+.........-....+++++|+|.+.+.-..+..+...+............. ......|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~p~~i~ 146 (260)
T d1rwia_ 82 LAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG---------------LNDPDGVA 146 (260)
T ss_dssp ECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS---------------CCSCCEEE
T ss_pred eeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecc---------------cCCcceee
Confidence 554443332211111256789999999998876666656655443322211111110 01235789
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
..|+|++++ +.. ....|..++. +|....+.. ..-+....|++.|+|++.++-.. .+.|.-++.+|
T Consensus 147 ~~~~g~~~v-~~~------~~~~i~~~d~-~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~------~~~i~~~~~~~ 212 (260)
T d1rwia_ 147 VDNSGNVYV-TDT------DNNRVVKLEA-ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN------TNQVVKLLAGS 212 (260)
T ss_dssp ECTTCCEEE-EEG------GGTEEEEECT-TTCCEEECCCSSCCSEEEEEECTTCCEEEEETT------TTEEEEECTTC
T ss_pred ecCCCCEee-ecc------cccccccccc-ccceeeeeeccccCCCccceeeeeeeeeeeecC------CCEEEEEeCCC
Confidence 999999877 443 2468889998 555444432 23344588999999998777544 35677788776
Q ss_pred eeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 260 LERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 260 l~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
..... +....-.....|++++||.++++-..+. .|+-.+.
T Consensus 213 ~~~~~--~~~~~~~~P~~i~~d~~g~l~vad~~~~---rI~~i~~ 252 (260)
T d1rwia_ 213 TTSTV--LPFTGLNTPLAVAVDSDRTVYVADRGND---RVVKLTS 252 (260)
T ss_dssp SCCEE--CCCCSCCCEEEEEECTTCCEEEEEGGGT---EEEEECC
T ss_pred CeEEE--EccCCCCCeEEEEEeCCCCEEEEECCCC---EEEEEeC
Confidence 54332 2211123577999999998766533333 5665554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.58 E-value=4.2e-08 Score=113.12 Aligned_cols=310 Identities=10% Similarity=0.001 Sum_probs=159.7
Q ss_pred EEEEECCCcEEEEECCCCeE-EEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCc
Q 000992 90 LIVGTSSGLLLLHSVDGNAT-EVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPE 168 (1196)
Q Consensus 90 La~as~dG~I~lw~~~~~~~-e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tq 168 (1196)
+++++.+|+|.+|++.+++. ..++ .||||+.+ +.+..+.+..++... .+ ....+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~Ip---------Vfspd~~~-g~g~~~es~~vl~~~----~~--~~~gd--------- 68 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDSAT-GWGITNESKEILGGD----QQ--YLNGD--------- 68 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEEC---------SSSBCTTT-CTTTSHHHHHHHCSS----SC--CSCCC---------
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEE---------eEcCCCCE-EEEECCccceEEecc----cc--cccCc---------
Confidence 45677899999999987654 3332 28999875 333333332221100 00 00000
Q ss_pred cccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCC--eEEEEecCCC
Q 000992 169 LSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGA--NIAAVYDRKS 245 (1196)
Q Consensus 169 f~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~--~IAs~s~d~~ 245 (1196)
.|.........+|||+|+. ++. ..+.+|.+||..++++..+.+ +.....+.++|+|+|+ ++++.+.+..
T Consensus 69 --~hhP~~s~t~gtpDGr~lf-V~d-----~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v 140 (441)
T d1qnia2 69 --CHHPHISMTDGRYDGKYLF-IND-----KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVI 140 (441)
T ss_dssp --BCCCEEEEETTEEEEEEEE-EEE-----TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCE
T ss_pred --ccCCCcceecccCCCCEEE-EEc-----CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcc
Confidence 1112234445689999997 554 246799999999999888765 4455678999999999 4555544310
Q ss_pred ---C--------CCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEE
Q 000992 246 ---E--------NKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYE 314 (1196)
Q Consensus 246 ---~--------~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~ 314 (1196)
+ .....+..++...... .+.++. ......++|+|||+.+.+.+.+... +..++.....- ...
T Consensus 141 ~~~~dg~~~~~~~~~~~~~~iD~~t~~v-~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~--~~~id~~t~~~--~d~ 213 (441)
T d1qnia2 141 PQPNDGTDFSLDNSYTMFTAIDAETMDV-AWQVIV--DGNLDNTDADYTGKYATSTCYNSER--AVDLAGTMRND--RDW 213 (441)
T ss_dssp ESSCSSSCCCGGGEEEEEEEEETTTCSE-EEEEEE--SSCCCCEEECSSSSEEEEEESCTTC--CSSHHHHTCSS--BCE
T ss_pred cccCcccccccccccceEEeecCcccee-eEEEec--CCCccceEECCCCCEEEEEecCCCc--eEEEeccCcce--EEE
Confidence 0 0001112233322111 112221 1346689999999999998876521 11111111000 001
Q ss_pred EEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecCCCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCE
Q 000992 315 IRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVMENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAV 394 (1196)
Q Consensus 315 l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V 394 (1196)
+... +....+...|++.. +.+ . +.+. .++|+.. .. . ..+.+.-+...
T Consensus 214 i~v~-n~p~~~~~~~dGk~-~~v-~-----------------~~~v-~vvd~~~-------~~----~-v~~~IPvgksP 260 (441)
T d1qnia2 214 VVVF-NVERIAAAVKAGNF-KTI-G-----------------DSKV-PVVDGRG-------ES----E-FTRYIPVPKNP 260 (441)
T ss_dssp EEEE-EHHHHHHHHHTTCC-BCC-T-----------------TCCC-CEEECSS-------SC----S-SEEEECCBSSC
T ss_pred EEeC-CccceEEEecCCCE-EEe-C-----------------CCCc-EEEEccc-------CC----c-eEEEEeCCCCc
Confidence 1110 00011223344432 100 0 1111 1222211 00 0 01223333345
Q ss_pred EEEEEecCCCCCEE-EEEECCCcEEEEeCCCCCccccccCCceeeeeecc-cccC-CcEEEEEEecCCeEEEEEecCCCC
Q 000992 395 TEMAFYSKSSKNCL-AAILSDGCLCVVDLPAPDMLEDLEGTEFVVEACIS-ETAF-GSVIHLIWLGSHLLLSVSHHGPRH 471 (1196)
Q Consensus 395 ~~Vafspdg~~~~l-As~~~dg~v~lw~~~~~~~~~~~~g~~~~~~~~~~-~~~~-~~v~~l~~~~d~~lla~~~~~~~~ 471 (1196)
..|++|||| +++ +++..+++|.+|+++.... .+.++ .....++. ..+. -.+.|.+|.++|..+.+.+.+ +
T Consensus 261 hGv~vSPDG--kyl~~~~~~~~tvsv~d~~k~~~--~~~~~-~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d--s 333 (441)
T d1qnia2 261 HGLNTSPDG--KYFIANGKLSPTVSVIAIDKLDD--LFEDK-IELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID--S 333 (441)
T ss_dssp CCEEECTTS--CEEEEECTTSSBEEEEEGGGHHH--HTTTS-SCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT--T
T ss_pred cCceECCCC--CEEEEeCCcCCcEEEEEeehhhh--Hhhcc-CCcceEEEeecccccCcccceecCCceEEEccccc--c
Confidence 678999999 654 6677899999999864211 12222 11111111 1111 256788999999877776655 7
Q ss_pred ceEEEEee
Q 000992 472 SNYFRGAT 479 (1196)
Q Consensus 472 ~~~~~~~~ 479 (1196)
+++-|++.
T Consensus 334 ~v~kw~~~ 341 (441)
T d1qnia2 334 QVCKWNIA 341 (441)
T ss_dssp EEEEEEHH
T ss_pred eEEEeccc
Confidence 88889873
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.58 E-value=6.6e-08 Score=111.48 Aligned_cols=236 Identities=10% Similarity=-0.012 Sum_probs=141.3
Q ss_pred eeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEE--EEEECCC--
Q 000992 23 LQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEAL--IVGTSSG-- 97 (1196)
Q Consensus 23 ~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~L--a~as~dG-- 97 (1196)
.......+||..||+... ++.|-.||+ .+.+.. ++.++|. +..+.++.|+|||+.+ +..+++.
T Consensus 74 ~s~t~gtpDGr~lfV~d~~~~rVavIDl--~t~k~~-~ii~iP~---------g~gphgi~~spdg~t~YV~~~~~~~v~ 141 (441)
T d1qnia2 74 ISMTDGRYDGKYLFINDKANTRVARIRL--DIMKTD-KITHIPN---------VQAIHGLRLQKVPKTNYVFCNAEFVIP 141 (441)
T ss_dssp EEEETTEEEEEEEEEEETTTTEEEEEET--TTTEEE-EEEECTT---------CCCEEEEEECCSSBCCEEEEEECSCEE
T ss_pred cceecccCCCCEEEEEcCCCCEEEEEEC--CCCcEe-eEEecCC---------CCCccceEEeccCCEEEEEeccCCccc
Confidence 444555688999999864 667889998 444331 2222221 4679999999999954 3333322
Q ss_pred ---------------cEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCCce-EEEEe-ccCceeeeeeccccc
Q 000992 98 ---------------LLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGFGQ-ILVMT-HDWDLLYENPLEELA 159 (1196)
Q Consensus 98 ---------------~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d~t-V~l~~-~~~d~~~~~~l~~~~ 159 (1196)
.+..+|..+.++. .+- ..+....++|||||+++.+++.+.. +..+. ..+.....+...
T Consensus 142 ~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~--- 217 (441)
T d1qnia2 142 QPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF--- 217 (441)
T ss_dssp SSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE---
T ss_pred ccCcccccccccccceEEeecCccceeeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC---
Confidence 2244777776543 222 2456788999999999998876532 21100 001100000000
Q ss_pred CccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEE
Q 000992 160 EGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAA 239 (1196)
Q Consensus 160 ~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs 239 (1196)
+.-..+..+|||+++. +++ ++.+.|+++.+..+..+.... ...+.++.+|||+++.+
T Consensus 218 --------------n~p~~~~~~~dGk~~~-v~~-------~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~ 274 (441)
T d1qnia2 218 --------------NVERIAAAVKAGNFKT-IGD-------SKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIA 274 (441)
T ss_dssp --------------EHHHHHHHHHTTCCBC-CTT-------CCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEE
T ss_pred --------------CccceEEEecCCCEEE-eCC-------CCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEE
Confidence 0112345689999887 653 467888887555555554433 33478999999998876
Q ss_pred EecCCCCCCCCeEEEEeCC-------CeeEEEEEec-cC-CCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 240 VYDRKSENKCPSIVFYERN-------GLERSSFDIN-EQ-IDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 240 ~s~d~~~~~~~~V~~~e~n-------Gl~~~~f~l~-~~-~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
++.. ..+|.+|+.. |.....-++. .+ ..-.....+|+++|..+.+...|. +|..|++.
T Consensus 275 ~~~~-----~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds---~v~kw~~~ 341 (441)
T d1qnia2 275 NGKL-----SPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDS---QVCKWNIA 341 (441)
T ss_dssp ECTT-----SSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTT---EEEEEEHH
T ss_pred eCCc-----CCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccc---eEEEeccc
Confidence 6543 4579999832 1110000000 00 011245578999999999988888 89999975
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.57 E-value=5.7e-06 Score=90.36 Aligned_cols=237 Identities=12% Similarity=-0.010 Sum_probs=143.3
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+..+|+++|+..+++...++.|++|+. ..+. .+ +... .+.+.+++|+|||+.+++...++.+..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p--~g~~---~~------~~~~----~~~~~gla~~~dG~l~v~~~~~~~~~~ 93 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITP--DGNQ---QI------HATV----EGKVSGLAFTSNGDLVATGWNADSIPV 93 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT--TCCE---EE------EEEC----SSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeC--CCCE---EE------EEcC----CCCcceEEEcCCCCeEEEecCCceEEE
Confidence 5778999999985555556888999998 3221 11 1111 357999999999999999889999888
Q ss_pred EECCC--CeEEEeeee--cCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeE
Q 000992 102 HSVDG--NATEVVGRV--EGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKS 177 (1196)
Q Consensus 102 w~~~~--~~~e~vg~~--~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~ 177 (1196)
|+..+ +....+... ....+.+++.|||.++++.+.++.+..++...... ........ ..............
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~n 168 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG-SIWLEHPM----LARSNSESVFPAAN 168 (302)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE-EEEEECGG----GSCSSTTCCSCSEE
T ss_pred EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc-eeEecCCc----cceeeccCcccccc
Confidence 87654 333322211 24588999999999998888888776554322111 11111100 00001111223456
Q ss_pred EEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEE---EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEE
Q 000992 178 PISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQA---SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVF 254 (1196)
Q Consensus 178 ~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~---~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~ 254 (1196)
.+++.++.-|++ .+ ..+.|..++........ ... ..+....+++.++|++.++...+ ..|..
T Consensus 169 gi~~~~~~l~~~--~~------~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~------~~V~~ 233 (302)
T d2p4oa1 169 GLKRFGNFLYVS--NT------EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIY------NSVVR 233 (302)
T ss_dssp EEEEETTEEEEE--ET------TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTT------CCEEE
T ss_pred cccccCCceeee--cC------CCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCC------CcEEE
Confidence 778876543333 32 34677766663322111 111 11223679999999987766543 46888
Q ss_pred EeCCCeeEEEEEeccCCCCcEEEEEE---ccCCCeeEEEEccC
Q 000992 255 YERNGLERSSFDINEQIDSTVELLKW---NCMSDLLAAVVRFE 294 (1196)
Q Consensus 255 ~e~nGl~~~~f~l~~~~~~~V~~laW---SpDg~~LAs~~~d~ 294 (1196)
++..|..+....+..+ -....+++| +||++.|.+++..+
T Consensus 234 i~p~G~~~~~~~~~~~-~~~pt~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 234 IAPDRSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp ECTTCCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ECCCCCEEEEEecCCC-CCCceEEEEcCCCCCCCEEEEECCCC
Confidence 8988865432222222 235889999 78999998876553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.57 E-value=2.2e-06 Score=93.71 Aligned_cols=201 Identities=13% Similarity=0.091 Sum_probs=122.7
Q ss_pred CCCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeee
Q 000992 75 GDSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENP 154 (1196)
Q Consensus 75 ~~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~ 154 (1196)
+..+-+++++|||+.+++...+|+|..|+.++. .+......+.+.+++|+|||+++++...++.+..|......-....
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence 346889999999999999999999999998874 4444556788999999999999998888887766643221111111
Q ss_pred cccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEecc--------CC--Cc
Q 000992 155 LEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSEL--------KA--FM 224 (1196)
Q Consensus 155 l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~--------~~--~~ 224 (1196)
+... ........+++.+||++++ ..+ .+..+..++..++........ .. ..
T Consensus 106 ~~~~------------~~~~~~n~i~~~~~g~~~v-~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (302)
T d2p4oa1 106 LLTL------------PDAIFLNGITPLSDTQYLT-ADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 166 (302)
T ss_dssp EEEC------------TTCSCEEEEEESSSSEEEE-EET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred cccc------------CCccccceeEEccCCCEEe-ecc------ccccceeeeccCCcceeEecCCccceeeccCcccc
Confidence 1111 1123457899999999988 443 346777788755543221110 11 12
Q ss_pred eeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCee-EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEE
Q 000992 225 GAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLE-RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICF 303 (1196)
Q Consensus 225 v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~-~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~ 303 (1196)
...+++. +..+..+... ...|.-++.++.. ........ .......+++++||.+.++...++ .|..++
T Consensus 167 ~ngi~~~--~~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~---~V~~i~ 235 (302)
T d2p4oa1 167 ANGLKRF--GNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYN---SVVRIA 235 (302)
T ss_dssp EEEEEEE--TTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTC---CEEEEC
T ss_pred ccccccc--CCceeeecCC-----CCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCC---cEEEEC
Confidence 3455554 4444444332 2456656544321 00000000 112345799999999777766555 677776
Q ss_pred ecC
Q 000992 304 FSN 306 (1196)
Q Consensus 304 ~~n 306 (1196)
...
T Consensus 236 p~G 238 (302)
T d2p4oa1 236 PDR 238 (302)
T ss_dssp TTC
T ss_pred CCC
Confidence 554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.48 E-value=1.7e-05 Score=87.31 Aligned_cols=230 Identities=13% Similarity=0.132 Sum_probs=136.3
Q ss_pred ceeEEeeecCCCEEEEEeC--------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE
Q 000992 22 ILQFSALDIEQNRLFFASS--------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG 93 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~--------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a 93 (1196)
...+.+||++++ ||+++. ++.|+.|+. .++... +...+.. ....+....+.|.|||..|.++
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~--~~~~~~--~~~~~~~-----~~~~g~P~Gl~~~~dg~~l~va 88 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDL--KTGKKT--VICKPEV-----NGYGGIPAGCQCDRDANQLFVA 88 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECT--TTCCEE--EEECCEE-----TTEECCEEEEEECSSSSEEEEE
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEEC--CCCcEE--EEECCcc-----ccCCCcceeEEEeCCCCEEEEE
Confidence 567899999987 555543 245999998 444431 1111110 0012457899999999999888
Q ss_pred ECCCcEEEEECCCCeEEEeeeecC-----cEEEEEECCCCCEEEEEeC---------------CceEEEEeccCceeeee
Q 000992 94 TSSGLLLLHSVDGNATEVVGRVEG-----GVRFISPSPDGDLLGVTTG---------------FGQILVMTHDWDLLYEN 153 (1196)
Q Consensus 94 s~dG~I~lw~~~~~~~e~vg~~~~-----~I~~~awSPDg~~LA~~s~---------------d~tV~l~~~~~d~~~~~ 153 (1196)
...+.|..++.+++..++...... ..+.+++.|||.+.++-.. .|.|..++.+..... .
T Consensus 89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~-~ 167 (314)
T d1pjxa_ 89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ-V 167 (314)
T ss_dssp ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE-E
T ss_pred ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeE-e
Confidence 877789999999876654332111 3577999999988776432 122322222221110 0
Q ss_pred ecccccCccccccCccccCCCCeEEEEEccCCc----eEEEeeccccccCCCCEEEEEECC-CCcEEEE-----ecc-CC
Q 000992 154 PLEELAEGFDVHEPELSSSFSFKSPISWRGDGK----YFATLSEFCNSSKLHKRLKVWERD-SGTLQAS-----SEL-KA 222 (1196)
Q Consensus 154 ~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~----~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~-----~e~-~~ 222 (1196)
.. .-..-..|+|+||+. +|. ++. ...+.|..|+.. .|.+... +.. ..
T Consensus 168 -~~---------------~~~~pNGi~~~~d~d~~~~~ly-v~d-----~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T d1pjxa_ 168 -DT---------------AFQFPNGIAVRHMNDGRPYQLI-VAE-----TPTKKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp -EE---------------EESSEEEEEEEECTTSCEEEEE-EEE-----TTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred -eC---------------CcceeeeeEECCCCCcceeEEE-EEe-----ecccceEEeeccCccccceeeEEEEcccccc
Confidence 00 001225789999875 444 332 235677777643 4444321 111 12
Q ss_pred CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCe-eEEEEEeccCCCCcEEEEEEccCCCeeEEEEcc
Q 000992 223 FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGL-ERSSFDINEQIDSTVELLKWNCMSDLLAAVVRF 293 (1196)
Q Consensus 223 ~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl-~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d 293 (1196)
+....+++-++|++.++... ...|..|+..|. ....+.+ + ...+.+++|.||++.|-+....
T Consensus 226 ~~pdGiavD~~GnlyVa~~~------~g~I~~~dp~~g~~~~~i~~--p-~~~~t~~afg~d~~~lyVt~~~ 288 (314)
T d1pjxa_ 226 GGADGMDFDEDNNLLVANWG------SSHIEVFGPDGGQPKMRIRC--P-FEKPSNLHFKPQTKTIFVTEHE 288 (314)
T ss_dssp CEEEEEEEBTTCCEEEEEET------TTEEEEECTTCBSCSEEEEC--S-SSCEEEEEECTTSSEEEEEETT
T ss_pred ccceeeEEecCCcEEEEEcC------CCEEEEEeCCCCEEEEEEEC--C-CCCEEEEEEeCCCCEEEEEECC
Confidence 23467999999998766543 357999997643 2333333 2 2357899999999877666554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=5.2e-06 Score=88.03 Aligned_cols=107 Identities=14% Similarity=0.132 Sum_probs=69.4
Q ss_pred EEEccC--CceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe
Q 000992 179 ISWRGD--GKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE 256 (1196)
Q Consensus 179 isWspD--G~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e 256 (1196)
+..||| |+.+|+++ ++.|.+.|..+|+...... ..+.+...+|||||+.||..+..........|.+++
T Consensus 4 ~~~sPdi~G~~v~f~~--------~~dl~~~d~~~g~~~~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVC--------CDDLWEHDLKSGSTRKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp CCEEEEEETTEEEEEE--------TTEEEEEETTTCCEEEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred cccCCCCCCCEEEEEe--------CCcEEEEECCCCCEEEEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence 457899 99999543 2567788997777765443 566788999999999999876532211223465566
Q ss_pred CCCeeEEEEEecc----CCCCcEEEEEEccCCCeeEEEEccC
Q 000992 257 RNGLERSSFDINE----QIDSTVELLKWNCMSDLLAAVVRFE 294 (1196)
Q Consensus 257 ~nGl~~~~f~l~~----~~~~~V~~laWSpDg~~LAs~~~d~ 294 (1196)
.+|-...+++... .........+|||||+.|+......
T Consensus 75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 116 (281)
T d1k32a2 75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQ 116 (281)
T ss_dssp TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTS
T ss_pred ecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccC
Confidence 5543332221110 0112466899999999999876554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.44 E-value=7.8e-05 Score=80.07 Aligned_cols=198 Identities=8% Similarity=0.008 Sum_probs=129.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeeee------cCcEEEEEECCCCCEEEEE--eCCceEEEEeccC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGRV------EGGVRFISPSPDGDLLGVT--TGFGQILVMTHDW 147 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~~------~~~I~~~awSPDg~~LA~~--s~d~tV~l~~~~~ 147 (1196)
..+..|++.|||+.+++-..+..|++||.++..+...+.. ...-..+++.+++.....+ +.++.|..++...
T Consensus 23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 3689999999999887777888999999987655444321 1123455665664444433 2344565555554
Q ss_pred ceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEe--ccCCCce
Q 000992 148 DLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASS--ELKAFMG 225 (1196)
Q Consensus 148 d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~--e~~~~~v 225 (1196)
......... .......++..++|.+++ +.. ....+.+++. +|++..+. ..+....
T Consensus 103 ~~~~~~~~~---------------~~~~p~~~avd~~G~i~v-~~~------~~~~~~~~~~-~g~~~~~~g~~~~~~~~ 159 (279)
T d1q7fa_ 103 QFVRKFGAT---------------ILQHPRGVTVDNKGRIIV-VEC------KVMRVIIFDQ-NGNVLHKFGCSKHLEFP 159 (279)
T ss_dssp CEEEEECTT---------------TCSCEEEEEECTTSCEEE-EET------TTTEEEEECT-TSCEEEEEECTTTCSSE
T ss_pred cceeecCCC---------------cccccceeccccCCcEEE-Eee------ccceeeEecc-CCceeeccccccccccc
Confidence 443322111 112346889999999887 443 3467889999 88887765 3344556
Q ss_pred eEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEec
Q 000992 226 AVLEWMPSGANIAAVYDRKSENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFS 305 (1196)
Q Consensus 226 ~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~ 305 (1196)
..+++.++|+++++... ...|..|+.+|....+|-.+. .......|+..|+|+++++-..+. ..|++++.+
T Consensus 160 ~~i~~d~~g~i~v~d~~------~~~V~~~d~~G~~~~~~g~~g-~~~~P~giavD~~G~i~Vad~~~~--~~v~~f~~~ 230 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNN--FNLTIFTQD 230 (279)
T ss_dssp EEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSS--CEEEEECTT
T ss_pred ceeeeccceeEEeeecc------ccceeeeecCCceeeeecccc-cccCCcccccccCCeEEEEECCCC--cEEEEECCC
Confidence 88999999998877655 357999999997655442121 123578999999999776533221 268888754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.37 E-value=9.3e-05 Score=81.28 Aligned_cols=230 Identities=10% Similarity=0.005 Sum_probs=137.0
Q ss_pred CEEEEEEccCCCEEEEEECCCcEEEEECCCCeEE-EeeeecCcEEEEEECCCCCEEEEEeCC----ceEEEEeccCceee
Q 000992 77 SITAFDYLMEKEALIVGTSSGLLLLHSVDGNATE-VVGRVEGGVRFISPSPDGDLLGVTTGF----GQILVMTHDWDLLY 151 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e-~vg~~~~~I~~~awSPDg~~LA~~s~d----~tV~l~~~~~d~~~ 151 (1196)
.+-.++|.++|+..++-..+|.|.-|+++++... .......+...++|+|||+++++..++ +.|...+.....+.
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 4678999999997777778999999999987654 333345678999999999988876543 22333222222211
Q ss_pred eeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc-EEEEeccCCCceeEEEE
Q 000992 152 ENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT-LQASSELKAFMGAVLEW 230 (1196)
Q Consensus 152 ~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~-l~~~~e~~~~~v~slaw 230 (1196)
...-. . ........+++.+||.+.+ ...........+.+..++. +|. +.....+.. .-+.|+|
T Consensus 121 ~~~~~-~------------~~~~~~nd~~~d~~G~l~v-td~~~~~~~~~g~v~~~~~-dg~~~~~~~~~~~-~pnGia~ 184 (319)
T d2dg1a1 121 DIIED-L------------STAYCIDDMVFDSKGGFYF-TDFRGYSTNPLGGVYYVSP-DFRTVTPIIQNIS-VANGIAL 184 (319)
T ss_dssp EEECS-S------------SSCCCEEEEEECTTSCEEE-EECCCBTTBCCEEEEEECT-TSCCEEEEEEEES-SEEEEEE
T ss_pred eeccC-C------------CcccCCcceeEEeccceee-cccccccccCcceeEEEec-ccceeEEEeeccc-eeeeeee
Confidence 11100 0 0112456799999999877 3321100012245666677 554 333333322 2378999
Q ss_pred cCCCCeEEEEecCCCCCCCCeEEEEeC--CCeeEEE----EEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 231 MPSGANIAAVYDRKSENKCPSIVFYER--NGLERSS----FDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 231 sPdG~~IAs~s~d~~~~~~~~V~~~e~--nGl~~~~----f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
+|||+.|-.+... .+.|..|+. +|..... +............|++.++|.+.++....+ .|+.++.
T Consensus 185 s~dg~~lyvad~~-----~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g---~V~~~~p 256 (319)
T d2dg1a1 185 STDEKVLWVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG---RVLVFNK 256 (319)
T ss_dssp CTTSSEEEEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT---EEEEECT
T ss_pred ccccceEEEeccc-----CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC---EEEEECC
Confidence 9999977655443 346777753 3332211 111111122356799999999888777766 8999996
Q ss_pred cCCEEEEEEEEEEecC------CcEEEEEccCCCc
Q 000992 305 SNNHWYLKYEIRYLRR------DGIRFMWHPTKPL 333 (1196)
Q Consensus 305 ~n~~wylkq~l~~~~~------~~~~v~Wsp~~~~ 333 (1196)
.. . +..++..+.. ...++.|.|.+..
T Consensus 257 ~G-~--~l~~i~~P~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T d2dg1a1 257 RG-Y--PIGQILIPGRDEGHMLRSTHPQFIPGTNQ 288 (319)
T ss_dssp TS-C--EEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred CC-c--EEEEEeCCCcCCCcCceeeeEEEeCCCCE
Confidence 54 2 3355655432 1267788876654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.33 E-value=0.00011 Score=80.64 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=138.5
Q ss_pred CEEEEEEccCCCEEEEEEC-------CCcEEEEECCCCeEEEeee-----ecCcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 77 SITAFDYLMEKEALIVGTS-------SGLLLLHSVDGNATEVVGR-----VEGGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 77 ~v~~v~~spd~~~La~as~-------dG~I~lw~~~~~~~e~vg~-----~~~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
.+-+++|.|||+..++... +|+|..||..++....+.. ..+.-..++|+|||..|.++...+.|...+
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 4567899999998776433 4679899999876553321 112346799999999998888776676554
Q ss_pred ccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccc--------cCCCCEEEEEECCCCcEEE
Q 000992 145 HDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNS--------SKLHKRLKVWERDSGTLQA 216 (1196)
Q Consensus 145 ~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~--------~~~d~~irVWd~~~G~l~~ 216 (1196)
.+..... .+....++... .....+++.+||.+.+|-.+.... ....+.|..++. +|+...
T Consensus 99 ~~g~~~~--~~~~~~~g~~~---------~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~ 166 (314)
T d1pjxa_ 99 TDGTFEE--IAKKDSEGRRM---------QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQ 166 (314)
T ss_dssp TTSCEEE--CCSBCTTSCBC---------BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEE
T ss_pred CCCcEEE--EEecccccccc---------CCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeE
Confidence 4332211 11111011111 123578999999988732111000 012345666677 777665
Q ss_pred EeccCCCceeEEEEcCCCC----eEEEEecCCCCCCCCeEEEEe--CCCeeEEE--E-EeccCCCCcEEEEEEccCCCee
Q 000992 217 SSELKAFMGAVLEWMPSGA----NIAAVYDRKSENKCPSIVFYE--RNGLERSS--F-DINEQIDSTVELLKWNCMSDLL 287 (1196)
Q Consensus 217 ~~e~~~~~v~slawsPdG~----~IAs~s~d~~~~~~~~V~~~e--~nGl~~~~--f-~l~~~~~~~V~~laWSpDg~~L 287 (1196)
...+... -+.|+|+|+++ .|..+... ...|.-|+ .+|..... | .+..........|++.++|.+.
T Consensus 167 ~~~~~~~-pNGi~~~~d~d~~~~~lyv~d~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gnly 240 (314)
T d1pjxa_ 167 VDTAFQF-PNGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp EEEEESS-EEEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred eeCCcce-eeeeEECCCCCcceeEEEEEeec-----ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEE
Confidence 5443332 26899999886 44444322 24566554 34443221 1 2222222345689999999987
Q ss_pred EEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEe
Q 000992 288 AAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWT 339 (1196)
Q Consensus 288 As~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~ 339 (1196)
++....+ .|+.|+....+. ..++..+......++|.|++. +|.+.+
T Consensus 241 Va~~~~g---~I~~~dp~~g~~--~~~i~~p~~~~t~~afg~d~~-~lyVt~ 286 (314)
T d1pjxa_ 241 VANWGSS---HIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTK-TIFVTE 286 (314)
T ss_dssp EEEETTT---EEEEECTTCBSC--SEEEECSSSCEEEEEECTTSS-EEEEEE
T ss_pred EEEcCCC---EEEEEeCCCCEE--EEEEECCCCCEEEEEEeCCCC-EEEEEE
Confidence 7665555 799998765432 223433323347899999774 466654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.21 E-value=0.00061 Score=73.75 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=141.3
Q ss_pred eEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEEE
Q 000992 24 QFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLLH 102 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~lw 102 (1196)
.+..||.+.+.||++.- .+.|+.||+ .+++. .+.. + ...+.++++.++|..++ ++.+| |.++
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~--~~g~~--~~~~---------~--~~~~~~i~~~~dg~l~v-a~~~g-l~~~ 83 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHL--ASGRK--TVHA---------L--PFMGSALAKISDSKQLI-ASDDG-LFLR 83 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEET--TTTEE--EEEE---------C--SSCEEEEEEEETTEEEE-EETTE-EEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEEC--CCCeE--EEEE---------C--CCCcEEEEEecCCCEEE-EEeCc-cEEe
Confidence 67899999999999864 667999998 44432 1111 1 23688999999987665 56665 8889
Q ss_pred ECCCCeEEEeeeec-----CcEEEEEECCCCCEEEEEeCCc----eEEEEe-ccCceeeeeecccccCccccccCccccC
Q 000992 103 SVDGNATEVVGRVE-----GGVRFISPSPDGDLLGVTTGFG----QILVMT-HDWDLLYENPLEELAEGFDVHEPELSSS 172 (1196)
Q Consensus 103 ~~~~~~~e~vg~~~-----~~I~~~awSPDg~~LA~~s~d~----tV~l~~-~~~d~~~~~~l~~~~~~~~Vs~tqf~~~ 172 (1196)
|..+++++...... ..++.+...|+|.+.+...... .-.++. .... +.... .. +
T Consensus 84 d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~-~~------~-------- 147 (295)
T d2ghsa1 84 DTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLF-AD------I-------- 147 (295)
T ss_dssp ETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEE-EE------E--------
T ss_pred ecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEEEe-ec------c--------
Confidence 99998876443221 2588999999999776543211 111111 1111 11110 00 0
Q ss_pred CCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC--CC----c--EEEEeccCCCceeEEEEcCCCCeEEEEecCC
Q 000992 173 FSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD--SG----T--LQASSELKAFMGAVLEWMPSGANIAAVYDRK 244 (1196)
Q Consensus 173 ~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~--~G----~--l~~~~e~~~~~v~slawsPdG~~IAs~s~d~ 244 (1196)
..-..++|++|++.+. ++. +..+.|..++.+ .+ + ......+..+....++.-++|++.++.-.
T Consensus 148 -~~~Ng~~~s~d~~~l~-~~d-----t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-- 218 (295)
T d2ghsa1 148 -SIPNSICFSPDGTTGY-FVD-----TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-- 218 (295)
T ss_dssp -SSEEEEEECTTSCEEE-EEE-----TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET--
T ss_pred -CCcceeeecCCCceEE-Eee-----cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC--
Confidence 1236899999999765 442 235778877652 11 1 11122334555688999999997766433
Q ss_pred CCCCCCeEEEEeCCCeeEEEEEeccCCCCcEEEEEEc-cCCCeeEEEEc
Q 000992 245 SENKCPSIVFYERNGLERSSFDINEQIDSTVELLKWN-CMSDLLAAVVR 292 (1196)
Q Consensus 245 ~~~~~~~V~~~e~nGl~~~~f~l~~~~~~~V~~laWS-pDg~~LAs~~~ 292 (1196)
...|..|+.+|.....+.++. ..+.+++|- ||.+.|-+.+.
T Consensus 219 ----~g~V~~~dp~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 219 ----EGAVDRYDTDGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp ----TTEEEEECTTCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred ----CCceEEecCCCcEeeEecCCC---CceEEEEEeCCCCCEEEEEEC
Confidence 246999999999888777653 358999995 88888877654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=0.00048 Score=72.83 Aligned_cols=196 Identities=7% Similarity=-0.030 Sum_probs=120.9
Q ss_pred ceeEEeeecCCCEEEEEeCCCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEEECCCcEEE
Q 000992 22 ILQFSALDIEQNRLFFASSANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVGTSSGLLLL 101 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~as~dG~I~l 101 (1196)
.+.++++|+++. ||++...+.++.+.. ..... .+ . +......+.+|++.++++..+.-..++.+..
T Consensus 58 ~p~gvav~~~g~-i~v~d~~~~~i~~~~--~~~~~--~~-------~--~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~ 123 (260)
T d1rwia_ 58 QPQGLAVDGAGT-VYVTDFNNRVVTLAA--GSNNQ--TV-------L--PFDGLNYPEGLAVDTQGAVYVADRGNNRVVK 123 (260)
T ss_dssp SCCCEEECTTCC-EEEEETTTEEEEECT--TCSCC--EE-------C--CCCSCCSEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred CceEEEEcCCCC-EEEeeeeeceeeeee--eccce--ee-------e--eeeeeeecccccccccceeEeeccccccccc
Confidence 567889999876 666655555655544 11111 11 1 0111257899999999998887777777888
Q ss_pred EECCCCeEEEeee-ecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEE
Q 000992 102 HSVDGNATEVVGR-VEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPIS 180 (1196)
Q Consensus 102 w~~~~~~~e~vg~-~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~is 180 (1196)
++..+......+. --....+++++|+|+++++...++.|..++.+........... -..-..|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~---------------~~~p~gi~ 188 (260)
T d1rwia_ 124 LAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD---------------ITAPWGIA 188 (260)
T ss_dssp ECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS---------------CCSEEEEE
T ss_pred cccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccc---------------cCCCccce
Confidence 8877654333221 1234578899999998887777777877654433222111110 12347899
Q ss_pred EccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEeCCC
Q 000992 181 WRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYERNG 259 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e~nG 259 (1196)
+.++|++++ +.. ..+.|..++. .|....... ..-.....|++.|+|++..+-.. .+.|+-+..-|
T Consensus 189 ~d~~g~l~v-sd~------~~~~i~~~~~-~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~------~~rI~~i~~~~ 254 (260)
T d1rwia_ 189 VDEAGTVYV-TEH------NTNQVVKLLA-GSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG------NDRVVKLTSLE 254 (260)
T ss_dssp ECTTCCEEE-EET------TTTEEEEECT-TCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG------GTEEEEECCCG
T ss_pred eeeeeeeee-eec------CCCEEEEEeC-CCCeEEEEccCCCCCeEEEEEeCCCCEEEEECC------CCEEEEEeCCC
Confidence 999999887 443 3467777888 554444332 11123478999999997766433 35677666544
Q ss_pred e
Q 000992 260 L 260 (1196)
Q Consensus 260 l 260 (1196)
.
T Consensus 255 ~ 255 (260)
T d1rwia_ 255 H 255 (260)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.61 E-value=0.018 Score=61.64 Aligned_cols=230 Identities=8% Similarity=-0.064 Sum_probs=126.1
Q ss_pred EEEEccCCCEEEEE-ECCCcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCCceEEEEeccCceeeeeecccc
Q 000992 80 AFDYLMEKEALIVG-TSSGLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGFGQILVMTHDWDLLYENPLEEL 158 (1196)
Q Consensus 80 ~v~~spd~~~La~a-s~dG~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~ 158 (1196)
+-.|.++...|..+ ...+.|.-||+.+++..... ....+.++++.+||.+++ ++.+| |.+++..-..+.... ...
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~-~~~~~~~i~~~~dg~l~v-a~~~g-l~~~d~~tg~~~~l~-~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLI-ASDDG-LFLRDTATGVLTLHA-ELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEE-EETTE-EEEEETTTCCEEEEE-CSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEE-CCCCcEEEEEecCCCEEE-EEeCc-cEEeecccceeeEEe-eee
Confidence 35588766555543 46788999999998776543 366789999999997776 45665 555542211111111 000
Q ss_pred cCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEE
Q 000992 159 AEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIA 238 (1196)
Q Consensus 159 ~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IA 238 (1196)
. . ........+...|+|.+.++ ...... ....-.+|...+|++.....+.. .-..++|+|+++.+-
T Consensus 98 ~-~---------~~~~~~nd~~vd~~G~iw~~-~~~~~~--~~~~g~l~~~~~g~~~~~~~~~~-~~Ng~~~s~d~~~l~ 163 (295)
T d2ghsa1 98 S-D---------LPGNRSNDGRMHPSGALWIG-TMGRKA--ETGAGSIYHVAKGKVTKLFADIS-IPNSICFSPDGTTGY 163 (295)
T ss_dssp T-T---------CTTEEEEEEEECTTSCEEEE-EEETTC--CTTCEEEEEEETTEEEEEEEEES-SEEEEEECTTSCEEE
T ss_pred c-C---------CCcccceeeEECCCCCEEEE-eccccc--cccceeEeeecCCcEEEEeeccC-CcceeeecCCCceEE
Confidence 0 0 01124578899999997773 322111 12234455544676665554333 347899999999766
Q ss_pred EEecCCCCCCCCeEEEEeCCC---ee---EEEEEeccCCCCcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEE
Q 000992 239 AVYDRKSENKCPSIVFYERNG---LE---RSSFDINEQIDSTVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLK 312 (1196)
Q Consensus 239 s~s~d~~~~~~~~V~~~e~nG---l~---~~~f~l~~~~~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylk 312 (1196)
.+... ...|.-|+.++ .. ...|.-.....+....++..++|.+.++....+ .|..|+-... +.
T Consensus 164 ~~dt~-----~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g---~V~~~dp~G~---~~ 232 (295)
T d2ghsa1 164 FVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG---AVDRYDTDGN---HI 232 (295)
T ss_dssp EEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT---EEEEECTTCC---EE
T ss_pred Eeecc-----cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC---ceEEecCCCc---Ee
Confidence 55443 34676665432 11 111211111234567788888887666554444 5666664432 23
Q ss_pred EEEEEecCCcEEEEEccCCCceEEEE
Q 000992 313 YEIRYLRRDGIRFMWHPTKPLQLICW 338 (1196)
Q Consensus 313 q~l~~~~~~~~~v~Wsp~~~~~L~~~ 338 (1196)
.++..+...+++++|-.....+|.+.
T Consensus 233 ~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 233 ARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred eEecCCCCceEEEEEeCCCCCEEEEE
Confidence 44444333335555643222334443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.45 E-value=0.00035 Score=75.20 Aligned_cols=90 Identities=13% Similarity=0.001 Sum_probs=50.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHhc------C
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQA-LGKPGEAAKIALDYC------G 1078 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~-~~~~~eAa~i~~~yl------~ 1078 (1196)
|..++.+|.+.|++++|+++|. +++.+....+ ...........+++.+.. .|+|.+|.+.|.+-+ +
T Consensus 80 ~~~~g~~y~~~~~~~~A~~~~~------~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~ 152 (290)
T d1qqea_ 80 YVEAYKCFKSGGNSVNAVDSLE------NAIQIFTHRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH------HHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHH------HhhHHhhhcc-cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566666666666666553 3333444433 233334455566666643 477777777665521 2
Q ss_pred C-------HHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1079 D-------VTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1079 d-------~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
+ ......+|.+.++|++|+....+
T Consensus 153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~ 183 (290)
T d1qqea_ 153 SVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence 2 23356778888888888876543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.18 E-value=0.0031 Score=67.43 Aligned_cols=58 Identities=16% Similarity=-0.091 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----C----------HHHHHHHHHHhcCHHHHHHHHHhc
Q 000992 1046 KDEVAKLAQELCEELQALGKPGEAAKIALDYCG----D----------VTNGISLLIDARDWEEALRVAFMH 1103 (1196)
Q Consensus 1046 ~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d----------~~~Ai~~y~~~~~w~eA~rla~~~ 1103 (1196)
+......+..+|..+...|+|.+|..+|.+-+. . .-.++.+|...+.+..|.....+.
T Consensus 154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334456778899999999999999999877321 1 134556777788899988776664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.074 Score=56.58 Aligned_cols=163 Identities=15% Similarity=0.049 Sum_probs=100.2
Q ss_pred hcccHHHHhhCHHHHHHHHHHc---CCCcHHHH---HHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhccc
Q 000992 936 MRYTIDLRLQRFENALKHIVSM---GDSYHADC---LNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVK 1004 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~a---le~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~ 1004 (1196)
..+.+...++++++|...+.++ .++..+.- -...... +.|++|++.+ .++ .....+...|.-+...+
T Consensus 174 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 251 (388)
T d1w3ba_ 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-RIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred hhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhcc-ccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCC
Confidence 3345666788888888887654 22222111 1233555 7788888777 122 23345556778888888
Q ss_pred CHHHHHHHHHhCC-----C---HHHHHHHHHHcCCHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCS-----S---LEKAMKAYRASGNWSGVLTVAGLL-KLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag-----~---~~kAl~~y~~~g~w~~al~la~~l-~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
++++|...|.++- + +.....+|...|++.+|+...... ...+.. ......++..+...|+|.+|...|.+
T Consensus 252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCcc-chhhhHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888887651 1 122235677778888887654431 001111 24566778888888999999888887
Q ss_pred hcC----CH---HHHHHHHHHhcCHHHHHHHHH
Q 000992 1076 YCG----DV---TNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1076 yl~----d~---~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.+. +. -.-..+|.+.++|++|+....
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 543 21 122456777888888876543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.23 E-value=0.57 Score=52.05 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=41.6
Q ss_pred EEEEEEccCCCEEEEEE-CCC----cEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeCC
Q 000992 78 ITAFDYLMEKEALIVGT-SSG----LLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTGF 137 (1196)
Q Consensus 78 v~~v~~spd~~~La~as-~dG----~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~d 137 (1196)
+.++.+|||++.+|.+. .+| +|++.|+.+++..-.+-.......++|++|++.|.....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~ 191 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYP 191 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECC
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEec
Confidence 56788999999999654 344 5888999998753111111112468899999999887644
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.23 E-value=0.023 Score=62.02 Aligned_cols=150 Identities=11% Similarity=0.109 Sum_probs=83.1
Q ss_pred cHHHHhhCHHHHHHHHHHcCCCcHHHHHHHHHHHhcC---hHHHHhhc--CCcHHHHHHHHHHHHHHh-cccCHHHHHHH
Q 000992 939 TIDLRLQRFENALKHIVSMGDSYHADCLNLMKKYAQL---FPLGLKLI--TDPAKMEQVLEAWADHLS-DVKCFEDAATT 1012 (1196)
Q Consensus 939 ~Id~~L~ry~~Al~~l~~~g~~~~~~ale~~~~~~~l---y~~AL~L~--~d~~~~~~i~~~~A~~L~-~~~~~~eAa~~ 1012 (1196)
.+...+++|++|+.++.+.+. ++.|+++++++ +. |.+-...+ ..+.+...++ |..+. ...+......+
T Consensus 35 ~lY~~~~d~~rl~~~~v~l~~--~~~avd~~~k~-~~~~~~k~~~~~l~~~~e~~la~i~---~~~~~~~~d~l~~~v~~ 108 (336)
T d1b89a_ 35 LLYNNVSNFGRLASTLVHLGE--YQAAVDGARKA-NSTRTWKEVCFACVDGKEFRLAQMC---GLHIVVHADELEELINY 108 (336)
T ss_dssp HHHHHTTCHHHHHHHHHTTTC--HHHHHHHHHHH-TCHHHHHHHHHHHHHTTCHHHHHHT---TTTTTTCHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHhhcc--HHHHHHHHHHc-CCHHHHHHHHHHHHhCcHHHHHHHH---HHHhhcCHHHHHHHHHH
Confidence 444566777777777777655 67777777776 53 33322222 3333332222 11111 11122445666
Q ss_pred HHhCCCHHHHHHHHHHcCC--------HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH-cCCh--HHHHHHHHHhcCCHH
Q 000992 1013 YFCCSSLEKAMKAYRASGN--------WSGVLTVAGLLKLGKDEVAKLAQELCEELQA-LGKP--GEAAKIALDYCGDVT 1081 (1196)
Q Consensus 1013 y~~ag~~~kAl~~y~~~g~--------w~~al~la~~l~~~~~~~~~l~~~la~~L~~-~~~~--~eAa~i~~~yl~d~~ 1081 (1196)
|+..|.++..+.-+..+-. ..+...++.++ ++++ +-++|.. ..+| ..|.+++.+ .+-++
T Consensus 109 ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~--~~~k-------l~e~l~~~s~~y~~~k~~~~c~~-~~l~~ 178 (336)
T d1b89a_ 109 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF--KPQK-------MREHLELFWSRVNIPKVLRAAEQ-AHLWA 178 (336)
T ss_dssp HHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT--CHHH-------HHHHHHHHSTTSCHHHHHHHHHT-TTCHH
T ss_pred HHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh--ChHH-------HHHHHHhccccCCHHHHHHHHHH-cCChH
Confidence 6776766666655554311 22333333332 3332 3345544 3444 667777777 67788
Q ss_pred HHHHHHHHhcCHHHHHHHHHhcC
Q 000992 1082 NGISLLIDARDWEEALRVAFMHR 1104 (1196)
Q Consensus 1082 ~Ai~~y~~~~~w~eA~rla~~~~ 1104 (1196)
++|-+|.+.++|++|+.++..|.
T Consensus 179 elv~Ly~~~~~~~~A~~~~i~~~ 201 (336)
T d1b89a_ 179 ELVFLYDKYEEYDNAIITMMNHP 201 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHhcCCHHHHHHHHHHcc
Confidence 88888888888888888877775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.027 Score=59.82 Aligned_cols=49 Identities=20% Similarity=0.036 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhc----CCHH---HHHHHHHHhcCHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALDYC----GDVT---NGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~yl----~d~~---~Ai~~y~~~~~w~eA~rl 1099 (1196)
+....+|..+...|++.+|.+.|.+.+ ++++ .-..+|.+.+++++|+..
T Consensus 207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456678888888888888888887643 2222 123466777777777654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.011 Score=63.52 Aligned_cols=135 Identities=16% Similarity=0.115 Sum_probs=84.2
Q ss_pred ccHHHHhhCHHHHHHHHHHcC---CCcHH----HHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000992 938 YTIDLRLQRFENALKHIVSMG---DSYHA----DCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 938 ~~Id~~L~ry~~Al~~l~~~g---~~~~~----~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
+.+....|+|++|+..+.+.. +.... .+ ....+. +.|++|++.| .+|. ...++..+|..+...++
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 286 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA-CVYYEQ-GLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHT-TCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSC
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHH-HHHHHC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 455566778888888776542 21111 12 223455 6777777766 2443 34566677888888889
Q ss_pred HHHHHHHHHhCCC--------HHHHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHh
Q 000992 1006 FEDAATTYFCCSS--------LEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDY 1076 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~--------~~kAl~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~y 1076 (1196)
+++|...|..+-. +.....+|...|++++|+....+ +...++. ......+|..+...|++.+|...|.+-
T Consensus 287 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9888888776521 12233566677777777765543 2223332 345667888888888888888877663
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.49 E-value=0.011 Score=64.76 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=72.7
Q ss_pred HHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000992 994 EAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIA 1073 (1196)
Q Consensus 994 ~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~ 1073 (1196)
...|+.+++.+.|+.|+++|...+++++++.+|++.++|+.|+..+++.+ +. ++...+...|.+..+..-|..+-
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~-~~----~~~k~~~~~l~~~~e~~la~i~~ 92 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN-ST----RTWKEVCFACVDGKEFRLAQMCG 92 (336)
T ss_dssp -----------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT-CH----HHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcC-CH----HHHHHHHHHHHhCcHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999876 33 45566677777777666554321
Q ss_pred HH---hcCCHHHHHHHHHHhcCHHHHHHHHHh
Q 000992 1074 LD---YCGDVTNGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1074 ~~---yl~d~~~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.. +.......|.+|-+.+.|++.+.+-..
T Consensus 93 ~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~ 124 (336)
T d1b89a_ 93 LHIVVHADELEELINYYQDRGYFEELITMLEA 124 (336)
T ss_dssp TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11 123456689999999999999877664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.064 Score=56.72 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=98.2
Q ss_pred hhhhcccHHHHhhCHHHHHHHHHHc---CCCcHHHHH----HHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHH
Q 000992 933 PLLMRYTIDLRLQRFENALKHIVSM---GDSYHADCL----NLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHL 1000 (1196)
Q Consensus 933 ~~~~r~~Id~~L~ry~~Al~~l~~~---g~~~~~~al----e~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L 1000 (1196)
..+.++......|+|++|+..|.++ .+... +|. ...... +.|++|++.+ .+|.. ...+..+|..+
T Consensus 21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~ 97 (323)
T d1fcha_ 21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM-EAWQYLGTTQAEN-EQELLAISALRRCLELKPDN-QTALMALAVSF 97 (323)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc-CChHHHHHHHHhhhcccccc-ccccccccccc
Confidence 3455666667788888888888654 33322 221 233566 7788887776 24432 35666777888
Q ss_pred hcccCHHHHHHHHHhCCCH-----------------------HHHHHHHHHcCCHHHHHHHHh---hcCCCHHHHHHHHH
Q 000992 1001 SDVKCFEDAATTYFCCSSL-----------------------EKAMKAYRASGNWSGVLTVAG---LLKLGKDEVAKLAQ 1054 (1196)
Q Consensus 1001 ~~~~~~~eAa~~y~~ag~~-----------------------~kAl~~y~~~g~w~~al~la~---~l~~~~~~~~~l~~ 1054 (1196)
...+++++|..+|..+-.. .+.+..+...+.+.++..... .+..+..+ ..+..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~-~~~~~ 176 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID-PDVQC 176 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC-HHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc-cccch
Confidence 8888888888777764110 111122222333444443221 11101001 24566
Q ss_pred HHHHHHHHcCChHHHHHHHHHhcC----CHH---HHHHHHHHhcCHHHHHHHHHh
Q 000992 1055 ELCEELQALGKPGEAAKIALDYCG----DVT---NGISLLIDARDWEEALRVAFM 1102 (1196)
Q Consensus 1055 ~la~~L~~~~~~~eAa~i~~~yl~----d~~---~Ai~~y~~~~~w~eA~rla~~ 1102 (1196)
.+|..+...|++.+|...|.+.+. +.+ ....+|.+.+++++|+....+
T Consensus 177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 231 (323)
T d1fcha_ 177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 231 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHH
Confidence 788888899999999999887432 222 334578899999999876543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.47 E-value=0.19 Score=56.72 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=39.9
Q ss_pred CCEEEEEEccCCCEEEEEECCCcEEEEECCCCeEEEeee---------ecCcEEEEEECCC
Q 000992 76 DSITAFDYLMEKEALIVGTSSGLLLLHSVDGNATEVVGR---------VEGGVRFISPSPD 127 (1196)
Q Consensus 76 ~~v~~v~~spd~~~La~as~dG~I~lw~~~~~~~e~vg~---------~~~~I~~~awSPD 127 (1196)
+.+++|+|.|||+.|++--.+|+|++++..++....+.. -++|...+++.||
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 579999999999988765447999999988765543221 1468899999997
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.30 E-value=0.21 Score=55.78 Aligned_cols=125 Identities=9% Similarity=0.018 Sum_probs=73.0
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC----------C
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS----------E 246 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~----------~ 246 (1196)
..+++||||+++| .+--.++ .+..++||+|..+|+.+...-+.. ....++|++||+.|.-...+.. .
T Consensus 128 ~~~~~Spd~~~la-~s~d~~G-~e~~~l~v~Dl~tg~~~~~~i~~~-~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 128 RGYAFSEDGEYFA-YGLSASG-SDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEECTTSSEEE-EEEEETT-CSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred cceEecCCCCEEE-EEecccc-CchheeEEeccCcceecccccccc-cccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 4568899999999 5532222 356789999999998765321111 1257899999998876543321 0
Q ss_pred CCCCeEEEEeCCCeeEE-EEEeccCC-CCcEEEEEEccCCCeeEEEEccCCcceEEEEEe
Q 000992 247 NKCPSIVFYERNGLERS-SFDINEQI-DSTVELLKWNCMSDLLAAVVRFEEYDSVKICFF 304 (1196)
Q Consensus 247 ~~~~~V~~~e~nGl~~~-~f~l~~~~-~~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~ 304 (1196)
.....|.++........ ........ ...+..+..|+||++|......+......+|..
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 11234655554332211 11222222 235778889999999887665442223444443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.52 E-value=2.7 Score=44.90 Aligned_cols=106 Identities=13% Similarity=0.032 Sum_probs=59.9
Q ss_pred CeEEEEEccCCceEEEeeccccc---------cCCCCEEEEEECCCCcEEEEeccCCCceeEEEEcCCCCeEEEEecCCC
Q 000992 175 FKSPISWRGDGKYFATLSEFCNS---------SKLHKRLKVWERDSGTLQASSELKAFMGAVLEWMPSGANIAAVYDRKS 245 (1196)
Q Consensus 175 ~v~~isWspDG~~lAsvss~d~~---------~~~d~~irVWd~~~G~l~~~~e~~~~~v~slawsPdG~~IAs~s~d~~ 245 (1196)
....|+..+||.+++ +...... -.+..+..||..+.++.....++.. .-+.|+++|||++|..+...
T Consensus 151 ~pNDv~~~~~g~fy~-Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~-~pNGI~~s~d~~~lyVa~t~-- 226 (340)
T d1v04a_ 151 SVNDIVAVGPEHFYA-TNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFD-FANGINISPDGKYVYIAELL-- 226 (340)
T ss_dssp SEEEEEEEETTEEEE-EESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEES-SEEEEEECTTSSEEEEEEGG--
T ss_pred CccceEEecCCCEEE-ecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCC-ccceeEECCCCCEEEEEeCC--
Confidence 457899999999998 4321100 0122344555553444433333333 34899999999988777654
Q ss_pred CCCCCeEEEEeCCCeeEEEE--EeccCCCCcEEEEEEcc-CCCeeEE
Q 000992 246 ENKCPSIVFYERNGLERSSF--DINEQIDSTVELLKWNC-MSDLLAA 289 (1196)
Q Consensus 246 ~~~~~~V~~~e~nGl~~~~f--~l~~~~~~~V~~laWSp-Dg~~LAs 289 (1196)
...|..|++++....+. .... ....-.|.+.+ +|.+.+.
T Consensus 227 ---~~~i~~y~~~~~~~l~~~~~~~l--~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 227 ---AHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp ---GTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCCEEEE
T ss_pred ---CCeEEEEEeCCCcccceEEEecC--CCCCCccEEecCCCEEEEE
Confidence 35688787654332221 1222 23466788876 4444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=2.6 Score=43.04 Aligned_cols=55 Identities=11% Similarity=-0.096 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHH------------HHHHHHHHcCCHHHHHHHHh
Q 000992 986 PAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLE------------KAMKAYRASGNWSGVLTVAG 1040 (1196)
Q Consensus 986 ~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~------------kAl~~y~~~g~w~~al~la~ 1040 (1196)
+.....+....|..+...+++++|...|.++-... ....+|...|+|++|.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 275 (366)
T d1hz4a_ 209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 275 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455667777888888888888888877764321 12356667777776665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=5.4 Score=40.42 Aligned_cols=201 Identities=14% Similarity=0.041 Sum_probs=102.8
Q ss_pred HHHHHhccChhHHHHHHHHh-cCCcchhhHHHHHHhcCChhhhcccHHHHhhCHHHHHHHHHHcC------CCcHHHHHH
Q 000992 895 YEAALGLYDLNLAAIVALNS-QRDPKEFLPYLQELESMPPLLMRYTIDLRLQRFENALKHIVSMG------DSYHADCLN 967 (1196)
Q Consensus 895 y~~ALg~yD~~lal~vAq~s-q~DpkeYlpfL~~L~~l~~~~~r~~Id~~L~ry~~Al~~l~~~g------~~~~~~ale 967 (1196)
...++..=|++-|+..++++ ..+|...-+ .+.. -....+.+...+|+|++|+.+|.++- .+....+..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~--~~~~---a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFY--SRIV---ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHH--HHHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcH--HHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 33444455555555555555 333432111 0111 12233566667788888888876541 111111111
Q ss_pred -------------HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCH----------
Q 000992 968 -------------LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSL---------- 1019 (1196)
Q Consensus 968 -------------~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~---------- 1019 (1196)
+.... ..|.+|++++ ........+....|..+...+++++|...|..+...
T Consensus 94 ~~~~~~~~~~~~~~~~a~-~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAW-ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence 11222 3344444444 112233345556777788888888887777665321
Q ss_pred ---HHHHHHHHHcCCHH-------HHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC----------
Q 000992 1020 ---EKAMKAYRASGNWS-------GVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD---------- 1079 (1196)
Q Consensus 1020 ---~kAl~~y~~~g~w~-------~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d---------- 1079 (1196)
......|...+.+. ++..+.............+...++..+...+++.+|...+.+.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 11123333444433 3344444444333344455666777788888888888887764321
Q ss_pred -HHHHHHHHHHhcCHHHHHHHHH
Q 000992 1080 -VTNGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1080 -~~~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
......+|...++|++|.....
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~ 275 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLE 275 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 1112456777888888876554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.77 E-value=0.12 Score=54.85 Aligned_cols=48 Identities=2% Similarity=-0.041 Sum_probs=25.3
Q ss_pred HHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 968 LMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 968 ~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
+.... +.++.|..+| ..|.....++..|+.++...+++++|..+|.++
T Consensus 108 ~~~~~-~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 108 YEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhc-ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33444 4555555544 233334445566666666666666665555543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=92.57 E-value=1.7 Score=40.50 Aligned_cols=60 Identities=15% Similarity=0.018 Sum_probs=30.3
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCC---C-HHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKL---G-KDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~---~-~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..|...|++++|++.|. +++.+..+... . ..........+|..+...|++++|...|.+
T Consensus 62 g~~~~~lg~~~~A~~~~~------~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 62 AEALAGLRSFDEALHSAD------KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHTTCHHHHHHHHH------HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCccchhhHhhh------hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777663 34444333211 1 111222344556666666666666555333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.49 Score=43.02 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHcCChHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKI 1072 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i 1072 (1196)
.+..++..+...++|.+|...
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~ 101 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHF 101 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 344445555444444444444
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.24 E-value=6.2 Score=41.91 Aligned_cols=188 Identities=15% Similarity=0.106 Sum_probs=97.5
Q ss_pred ceeEEeeecCCCEEEEEeC-------------CCcEEEEecccccccccceeeccccccccccCCC-CCCEEEEEE--cc
Q 000992 22 ILQFSALDIEQNRLFFASS-------------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEP-GDSITAFDY--LM 85 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~--sp 85 (1196)
-+.++++++++-.+ ++|. .+.|+.+|++ ..+..... +. +.+.+..+ .-.+..|.. .+
T Consensus 36 G~EDi~~~~dg~~~-issg~~~~~~~~~~~~~~G~i~~~dl~--~~~~~~~~--l~--~~~~~~~~~~f~PhGi~l~~~~ 108 (340)
T d1v04a_ 36 GSEDLEILPNGLAF-ISSGLKYPGIMSFDPDKSGKILLMDLN--EKEPAVSE--LE--IIGNTLDISSFNPHGISTFIDD 108 (340)
T ss_dssp CCCEEEECTTSEEE-EEECCCC--------CCCCEEEEEETT--SSSCCEEE--CE--EECSSSCGGGCCEEEEEEEECT
T ss_pred CcceEEECCCCcEE-EEecCccCCCCCCCCCCCCeEEEEecC--CCCCcceE--EE--ecCCCCCCcceeccceeEEEcC
Confidence 36678999876544 4442 2568888873 22211111 10 11111000 113455554 44
Q ss_pred CCC-EEEEEE---CCCcEEEEECC--CCeEEEeeeec----CcEEEEEECCCCCEEEEEeC---C--------------c
Q 000992 86 EKE-ALIVGT---SSGLLLLHSVD--GNATEVVGRVE----GGVRFISPSPDGDLLGVTTG---F--------------G 138 (1196)
Q Consensus 86 d~~-~La~as---~dG~I~lw~~~--~~~~e~vg~~~----~~I~~~awSPDg~~LA~~s~---d--------------~ 138 (1196)
||+ +|.+.. ...+|-+++.+ +.++..++.+. ...+.+++..||...++-.. + +
T Consensus 109 dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g 188 (340)
T d1v04a_ 109 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 188 (340)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE
T ss_pred CCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce
Confidence 565 455553 34567776653 44555444443 34788889899987776311 1 1
Q ss_pred eEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEEEEEECC-CCcEEEE
Q 000992 139 QILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRLKVWERD-SGTLQAS 217 (1196)
Q Consensus 139 tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~-~G~l~~~ 217 (1196)
.|.-|+. ... ..... . -..-..|+++||+++|. ++. +..++|++|++. ++.+...
T Consensus 189 ~v~~~~~--~~~-~~~~~---------~------l~~pNGI~~s~d~~~ly-Va~-----t~~~~i~~y~~~~~~~l~~~ 244 (340)
T d1v04a_ 189 FVTYYSP--NDV-RVVAE---------G------FDFANGINISPDGKYVY-IAE-----LLAHKIHVYEKHANWTLTPL 244 (340)
T ss_dssp EEEEECS--SCE-EEEEE---------E------ESSEEEEEECTTSSEEE-EEE-----GGGTEEEEEEECTTSCEEEE
T ss_pred eEEEEcC--Cce-EEEcC---------C------CCccceeEECCCCCEEE-EEe-----CCCCeEEEEEeCCCcccceE
Confidence 1111110 000 00000 0 02347899999999887 665 245789998874 2223221
Q ss_pred -eccCCCceeEEEEcC-CCCeEEEE
Q 000992 218 -SELKAFMGAVLEWMP-SGANIAAV 240 (1196)
Q Consensus 218 -~e~~~~~v~slawsP-dG~~IAs~ 240 (1196)
.....+....|.+.| +|.+.+.+
T Consensus 245 ~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 245 RVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EEecCCCCCCccEEecCCCEEEEEE
Confidence 223566678899976 56655544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=1.6 Score=41.57 Aligned_cols=28 Identities=7% Similarity=0.107 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000992 1116 SLECASSLIGEYKEGLEKVGKYLTRYLA 1143 (1196)
Q Consensus 1116 l~e~~~~~~e~l~~~~~~~~~~~~Rl~~ 1143 (1196)
+......+.+....-++.+.+-..+|.+
T Consensus 136 l~~~~~~~~~~~~~e~~~~~~~f~~~~~ 163 (170)
T d1p5qa1 136 LAVCQQRIRRQLAREKKLYANMFERLAE 163 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333334444444444444555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.34 E-value=0.74 Score=48.27 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHhC
Q 000992 990 EQVLEAWADHLSDVKCFEDAATTYFCC 1016 (1196)
Q Consensus 990 ~~i~~~~A~~L~~~~~~~eAa~~y~~a 1016 (1196)
..++..|++++...+++++|-.+|++|
T Consensus 203 ~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 203 PEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 356677777777777776666666553
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.04 E-value=5.6 Score=45.46 Aligned_cols=228 Identities=12% Similarity=0.061 Sum_probs=120.2
Q ss_pred eEEeeecCCCEEEEEeC----------------CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCC
Q 000992 24 QFSALDIEQNRLFFASS----------------ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK 87 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~----------------~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~ 87 (1196)
...++|++++.+|+.+. ...++..|. .+++..|.-.+.+.++-.. ........+....++
T Consensus 238 ~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~--~TG~~~W~~q~~~~D~Wd~--D~~~~~~l~~~~~~g 313 (571)
T d2ad6a1 238 GWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDL--DTGMAKWGYQKTPHDEWDF--AGVNQMVLTDQPVNG 313 (571)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEET--TTCCEEEEEESSTTCSSCC--CCCCCCEEEEEEETT
T ss_pred cccccchhcCeeeeecccccCccccccccccccccceeeeec--cchhheecccccCcccccc--ccccccceeeeeccC
Confidence 44689999999999865 235788888 7777666655444332111 111223333344455
Q ss_pred C---EEEEEECCCcEEEEECCCCeEEEeeee--------------------------------------cCcE--EEEEE
Q 000992 88 E---ALIVGTSSGLLLLHSVDGNATEVVGRV--------------------------------------EGGV--RFISP 124 (1196)
Q Consensus 88 ~---~La~as~dG~I~lw~~~~~~~e~vg~~--------------------------------------~~~I--~~~aw 124 (1196)
+ .++.++.+|.+.+.|..+++....... .++. ..+++
T Consensus 314 ~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~ 393 (571)
T d2ad6a1 314 KMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSY 393 (571)
T ss_dssp EEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEE
T ss_pred ccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceE
Confidence 4 456788899999999888764211000 0010 12556
Q ss_pred CCCCCEEEEEeCCceEEEEeccCceeeeeecccccCccccccCccccCCCCeEEEEEccCCceEEEeeccccccCCCCEE
Q 000992 125 SPDGDLLGVTTGFGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFKSPISWRGDGKYFATLSEFCNSSKLHKRL 204 (1196)
Q Consensus 125 SPDg~~LA~~s~d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v~~isWspDG~~lAsvss~d~~~~~d~~i 204 (1196)
+|+..++.+...+....+.... ..... .. ......+.+.+...... . ...+.|
T Consensus 394 dP~~~~~yv~~~~~~~~~~~~~------~~~~~---~~----------~~~~~~~~~~~~~~~~~--~------~~~G~l 446 (571)
T d2ad6a1 394 DPESRTLYAGLNHICMDWEPFM------LPYRA---GQ----------FFVGATLAMYPGPNGPT--K------KEMGQI 446 (571)
T ss_dssp ETTTTEEEEEEECEEEEEEECC------CCCCT---TS----------CCCCEEEEEEECTTSTT--S------CCCEEE
T ss_pred CCCCceEEEecccccccccccc------ccccC---Cc----------cccccceeeccccCCcc--c------CCcccE
Confidence 6666666655544332211100 00000 00 00012233332221111 0 123678
Q ss_pred EEEECCCCcEEEEeccCC-CceeEEEEcCCCCeEEEEecCCCCCCCCeEEEEe-CCCeeEEEEEeccCCCCcEEEEEEcc
Q 000992 205 KVWERDSGTLQASSELKA-FMGAVLEWMPSGANIAAVYDRKSENKCPSIVFYE-RNGLERSSFDINEQIDSTVELLKWNC 282 (1196)
Q Consensus 205 rVWd~~~G~l~~~~e~~~-~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~e-~nGl~~~~f~l~~~~~~~V~~laWSp 282 (1196)
.-+|..+|+......... ..-..| +-.|.+|..++.| ..++-|+ ++|...-++.++... .-.-+.|..
T Consensus 447 ~AiD~~TG~~~W~~~~~~~~~~g~l--~TagglVf~G~~d------g~l~A~Da~tGe~lW~~~l~~~~--~a~P~ty~~ 516 (571)
T d2ad6a1 447 RAFDLTTGKAKWTKWEKFAAWGGTL--YTKGGLVWYATLD------GYLKALDNKDGKELWNFKMPSGG--IGSPMTYSF 516 (571)
T ss_dssp EEECTTTCCEEEEEEESSCCCSBCE--EETTTEEEEECTT------SEEEEEETTTCCEEEEEECSSCC--CSCCEEEEE
T ss_pred EEeccCCCceeeEcCCCCCCCccee--EecCCEEEEECCC------CeEEEEECCCCcEEEEEECCCCc--eecceEEEE
Confidence 889998999887654221 111122 2346677667664 4677777 578888877776332 122377788
Q ss_pred CCC-eeEEEEc
Q 000992 283 MSD-LLAAVVR 292 (1196)
Q Consensus 283 Dg~-~LAs~~~ 292 (1196)
||+ ++|+...
T Consensus 517 dGkqYi~v~~g 527 (571)
T d2ad6a1 517 KGKQYIGSMYG 527 (571)
T ss_dssp TTEEEEEEEEC
T ss_pred CCEEEEEEEec
Confidence 996 5655544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.59 E-value=2.1 Score=39.87 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CHH
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DVT 1081 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~~ 1081 (1196)
+.+-+..|.+.|+|++|+++|. +|+.+- +.. ......+|..+...|++.+|...|.+.+. +++
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~------~al~~~------p~~-~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~ 79 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYS------QAIELN------PSN-AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK 79 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH------HHHHHS------TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhh------hccccc------hhh-hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH
Confidence 3445667778888888888874 444432 111 34667888888889999999988887432 222
Q ss_pred ---HHHHHHHHhcCHHHHHHHHH
Q 000992 1082 ---NGISLLIDARDWEEALRVAF 1101 (1196)
Q Consensus 1082 ---~Ai~~y~~~~~w~eA~rla~ 1101 (1196)
.-..+|...++|++|+....
T Consensus 80 a~~~~g~~~~~~g~~~eA~~~~~ 102 (159)
T d1a17a_ 80 GYYRRAASNMALGKFRAALRDYE 102 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 22456788888888876443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.51 E-value=14 Score=38.43 Aligned_cols=121 Identities=13% Similarity=0.110 Sum_probs=66.6
Q ss_pred EEEEccCCCeeEEEEccCCcceEEEEEecCCEEEEEEEEEEecCCcEEEEEccCCCceEEEEecCCcEEEEEEEEeeecC
Q 000992 277 LLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWYLKYEIRYLRRDGIRFMWHPTKPLQLICWTLDGQITTYNFIWTTAVM 356 (1196)
Q Consensus 277 ~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wylkq~l~~~~~~~~~v~Wsp~~~~~L~~~~~~g~~~~~~~~~~~~~~ 356 (1196)
+.--+|..++||.-+.. ++|++++++..- || ...++ .......|=.+ .+|.+.+.. .+ +.|++..
T Consensus 67 sAIMhP~~~IiALrag~----~LQiFnletK~k-lk-s~~~~-e~VvfWkWis~--~~L~lVT~t-aV----YHW~~~g- 131 (327)
T d1utca2 67 SAIMNPASKVIALKAGK----TLQIFNIEMKSK-MK-AHTMT-DDVTFWKWISL--NTVALVTDN-AV----YHWSMEG- 131 (327)
T ss_dssp EEEECSSSSEEEEEETT----EEEEEETTTTEE-EE-EEECS-SCCCEEEESSS--SEEEEECSS-EE----EEEESSS-
T ss_pred hhhcCCCCcEEEEecCC----eEEEEehhHhhh-hc-eEEcC-CCcEEEEecCC--CEEEEEcCC-ce----EEEcccC-
Confidence 45578999999998743 699999997542 22 22221 23366777654 457777753 33 3455531
Q ss_pred CCeeEEEEcCCEEEEeeccccCCCCCceeeeecCCCCEEEEEEecCCCCCEEEEEE-------CCCcEEEEeCCCCCccc
Q 000992 357 ENSTALVIDGSKILVTPLSLSLMPPPMYLFSLKFPTAVTEMAFYSKSSKNCLAAIL-------SDGCLCVVDLPAPDMLE 429 (1196)
Q Consensus 357 d~~~v~viDg~~l~lt~l~~~~vpppm~~~~l~~~~~V~~Vafspdg~~~~lAs~~-------~dg~v~lw~~~~~~~~~ 429 (1196)
+..-+++.+... .+ -...|..-.-+++. +.++..+ -.|.+.||..+. ...+
T Consensus 132 --------~s~P~k~fdR~~----------~L-~~~QIInY~~d~~~--kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ 189 (327)
T d1utca2 132 --------ESQPVKMFDRHS----------SL-AGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQ 189 (327)
T ss_dssp --------SCCCEEEEECCG----------GG-TTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETTT-TEEE
T ss_pred --------CCCchhhhhhcc----------cc-cCceEEEEEECCCC--CEEEEEeEecCCCceeEEEEEEEecc-CcCc
Confidence 111223322211 01 12345555556665 6554322 137889999874 3444
Q ss_pred cccCC
Q 000992 430 DLEGT 434 (1196)
Q Consensus 430 ~~~g~ 434 (1196)
.+.||
T Consensus 190 ~ieGh 194 (327)
T d1utca2 190 PIEGH 194 (327)
T ss_dssp EECCS
T ss_pred cccce
Confidence 56665
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.62 Score=46.78 Aligned_cols=79 Identities=10% Similarity=-0.098 Sum_probs=38.8
Q ss_pred hhcccHHHHhhCHHHHHHHHHHc---CCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhc
Q 000992 935 LMRYTIDLRLQRFENALKHIVSM---GDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSD 1002 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~---g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~ 1002 (1196)
+.++.+...+|+|++|+..|.++ .++.. ..+. .+... +.|++|++.| .+|. ....+...|.-+..
T Consensus 41 ~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~-~~~~~-g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 41 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI-YLTQA-GNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHT-TCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhch-HHHHH-HHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34455555566666666665543 22211 1222 12344 5555555555 2332 22344455666666
Q ss_pred ccCHHHHHHHHHhC
Q 000992 1003 VKCFEDAATTYFCC 1016 (1196)
Q Consensus 1003 ~~~~~eAa~~y~~a 1016 (1196)
.+++++|...|.++
T Consensus 118 ~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAF 131 (259)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 66666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.28 E-value=2.3 Score=40.93 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.....++..|...|++.+|.+.|.+
T Consensus 102 ~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 102 PLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5677889999999999999999888
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.52 E-value=0.59 Score=45.06 Aligned_cols=53 Identities=21% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+.+|.+.|++++|+.+|.++- .+++... .....+|..+...|+|.+|...|.+
T Consensus 45 g~~y~~~~~~~~Ai~~~~~al------------~l~p~~~-~a~~~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 45 ALCYLKMQQPEQALADCRRAL------------ELDGQSV-KAHFFLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT------------TSCTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHHHHHHH------------HhCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344555555555555554332 2233332 2456678888888888888777655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.43 E-value=0.62 Score=49.27 Aligned_cols=137 Identities=9% Similarity=-0.145 Sum_probs=70.3
Q ss_pred hcccHHHHhhCHHHHHHHHHHcCCCc--HHHHH----HHHHHHhcChHHHHhhc-CCcHHHHHHHHHHHHHHhcccCHHH
Q 000992 936 MRYTIDLRLQRFENALKHIVSMGDSY--HADCL----NLMKKYAQLFPLGLKLI-TDPAKMEQVLEAWADHLSDVKCFED 1008 (1196)
Q Consensus 936 ~r~~Id~~L~ry~~Al~~l~~~g~~~--~~~al----e~~~~~~~ly~~AL~L~-~d~~~~~~i~~~~A~~L~~~~~~~e 1008 (1196)
+.+.+....+++++|+..+.++-... .-.+. ....+. +.|++|+..+ ...+.... ...++..+...+.+.+
T Consensus 149 ~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 226 (334)
T d1dcea1 149 RRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL-HPQPDSGPQGRLPENVLLK-ELELVQNAFFTDPNDQ 226 (334)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH-SCCCCSSSCCSSCHHHHHH-HHHHHHHHHHHCSSCS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHhHHhHHH-HHHHHHHHHHhcchhH
Confidence 33566666788888888777653211 12221 123455 6666676666 22222222 2223344444555566
Q ss_pred HHHHHHhC--------CCHHHHHHHHHHcCCHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 AATTYFCC--------SSLEKAMKAYRASGNWSGVLTVAGL-LKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 Aa~~y~~a--------g~~~kAl~~y~~~g~w~~al~la~~-l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
|...|.++ ..+.....++...+++.+++....+ +...+.. ......+|..+.+.|++++|...|.+
T Consensus 227 a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 227 SAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666543 0111223444555666666654433 2223333 34566677777777777777666555
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.65 Score=45.48 Aligned_cols=128 Identities=9% Similarity=-0.051 Sum_probs=66.7
Q ss_pred hhcccHHHHhhCHHHHHHHHHHcCCCcH----HHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccC
Q 000992 935 LMRYTIDLRLQRFENALKHIVSMGDSYH----ADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKC 1005 (1196)
Q Consensus 935 ~~r~~Id~~L~ry~~Al~~l~~~g~~~~----~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~ 1005 (1196)
|.++.+....|+|++|++.|.++.+.+. ..+.-| .+. +.|++|++.| -||.. ...+...|.-+...++
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~-~~~-g~~~~A~~~~~kAl~ldp~~-~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMY-TIL-KNMTEAEKAFTRSINRDKHL-AVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHH-HHT-TCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHH-HHc-CCchhHHHHHHHHHHHhhhh-hhhHHHHHHHHHhhcc
Confidence 4445555556666666666666544321 222222 345 5666666655 24443 3355555666666666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1006 FEDAATTYFCCSSLEKAMKAYRASGN--WSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1006 ~~eAa~~y~~ag~~~kAl~~y~~~g~--w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
|++|...|. +|+++...... +. .+.....+. ..++...+|..+...|++.+|.+.+.+-+
T Consensus 86 ~~~A~~~~~------kAl~~~~~n~~~~~~---~~~~~~~~~---~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 86 YDLAIKDLK------EALIQLRGNQLIDYK---ILGLQFKLF---ACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHH------HHHHTTTTCSEEECG---GGTBCCEEE---HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHhCccCchHHHH---Hhhhhcccc---hHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666655553 23332211110 00 000011111 12456788888889999999999887743
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.50 E-value=2.3 Score=41.20 Aligned_cols=107 Identities=13% Similarity=0.034 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcChHHHHhhc--CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhh
Q 000992 964 DCLNLMKKYAQLFPLGLKLI--TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGL 1041 (1196)
Q Consensus 964 ~ale~~~~~~~ly~~AL~L~--~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~ 1041 (1196)
+++.+. .. +.|+.|++.| -.+.. ..++- .-+..|...|++++|+++|.++ +.+-
T Consensus 11 ~g~~~~-~~-~d~~~Al~~~~~i~~~~-~~~~~-------------nlG~~~~~~g~~~~A~~~~~kA------l~ld-- 66 (192)
T d1hh8a_ 11 EGVLAA-DK-KDWKGALDAFSAVQDPH-SRICF-------------NIGCMYTILKNMTEAEKAFTRS------INRD-- 66 (192)
T ss_dssp HHHHHH-HT-TCHHHHHHHHHTSSSCC-HHHHH-------------HHHHHHHHTTCHHHHHHHHHHH------HHHC--
T ss_pred HHHHHH-HC-CCHHHHHHHHHhcCCCC-HHHHH-------------HHHHHHHHcCCchhHHHHHHHH------HHHh--
Confidence 334443 33 6788888888 22221 22332 3356666777777777777443 3321
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcCC--------------------HH---HHHHHHHHhcCHHHHHH
Q 000992 1042 LKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCGD--------------------VT---NGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1042 l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~d--------------------~~---~Ai~~y~~~~~w~eA~r 1098 (1196)
+.. ......+|..+...|+|.+|..-|.+-+.. .+ .--.+|.+.++|++|+.
T Consensus 67 ----p~~-~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~ 141 (192)
T d1hh8a_ 67 ----KHL-AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 141 (192)
T ss_dssp ----TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----hhh-hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 111 235566777777888888887666552110 00 12346777888888875
Q ss_pred H
Q 000992 1099 V 1099 (1196)
Q Consensus 1099 l 1099 (1196)
.
T Consensus 142 ~ 142 (192)
T d1hh8a_ 142 Q 142 (192)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.05 E-value=1.5 Score=38.94 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=44.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH---
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV--- 1080 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~--- 1080 (1196)
+-+..|...|++++|+++|.++ +.+. +.+ ..+...+|..+...|+|.+|...|.+.+. ++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~a------l~~~---p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 74 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEA------IKLD---PHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY 74 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------HHHC---TTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH------HhcC---Ccc----hhhhhcccccccccccccccchhhhhHHHhccchhhHH
Confidence 3455566666666666666433 3211 111 23556667777777777777777766432 21
Q ss_pred HHHHHHHHHhcCHHHHHHHH
Q 000992 1081 TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1081 ~~Ai~~y~~~~~w~eA~rla 1100 (1196)
-.-..+|...++|++|+...
T Consensus 75 ~~~g~~~~~~~~~~~A~~~~ 94 (117)
T d1elwa_ 75 SRKAAALEFLNRFEEAKRTY 94 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHH
Confidence 22334566667777776543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.57 E-value=0.46 Score=42.50 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1051 KLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1051 ~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.....+|..+...|+|.+|...|.+
T Consensus 72 ~~~~~~g~~~~~~~~~~~A~~~~~~ 96 (117)
T d1elwa_ 72 KGYSRKAAALEFLNRFEEAKRTYEE 96 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4566788888888888888888766
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=86.42 E-value=5 Score=43.97 Aligned_cols=95 Identities=9% Similarity=0.002 Sum_probs=57.5
Q ss_pred cCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCC--CEEEEEECC----------
Q 000992 30 IEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEK--EALIVGTSS---------- 96 (1196)
Q Consensus 30 ~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~--~~La~as~d---------- 96 (1196)
.||..||+-.. ++.|-.+|+ ...+. .+|.++|. ...+-.+..++++ .+++.+++.
T Consensus 97 yDGrylFVNDkan~RVAvIdl--~~fkt-~kIi~iPn---------~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~ 164 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRC--DVMKC-DAILEIPN---------AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTN 164 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEET--TTTEE-EEEEECSS---------CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSS
T ss_pred cceeEEEEEcCCCceEEEEEC--cceee-eEEEecCC---------CCCCceeecccCCCeEEEEccCccccccCCCCcc
Confidence 46777777754 667888888 33332 12323332 2456666665544 455544442
Q ss_pred --------CcEEEEECCCCeEEEeeeecCcEEEEEECCCCCEEEEEeC
Q 000992 97 --------GLLLLHSVDGNATEVVGRVEGGVRFISPSPDGDLLGVTTG 136 (1196)
Q Consensus 97 --------G~I~lw~~~~~~~e~vg~~~~~I~~~awSPDg~~LA~~s~ 136 (1196)
+.+..+|.++.++..-=.+.+....+++||||+++.+.+.
T Consensus 165 l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 165 MEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp TTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred ccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEec
Confidence 2355688888766411123456778999999999998874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=86.01 E-value=6.7 Score=36.64 Aligned_cols=49 Identities=12% Similarity=-0.064 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC----CH---HHHHHHHHHhcCHHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG----DV---TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~----d~---~~Ai~~y~~~~~w~eA~rla 1100 (1196)
++..+|..+...|+|.+|...+.+-+. ++ -.-..+|...++|++|+.-.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~ 121 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444566666777888887777665321 11 12235667777777776543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=85.92 E-value=5 Score=42.40 Aligned_cols=123 Identities=10% Similarity=-0.060 Sum_probs=72.9
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCcEEEEec-cCCCceeEEEEcCCCCeEEEEecCCCCCCCCeEEEE
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGTLQASSE-LKAFMGAVLEWMPSGANIAAVYDRKSENKCPSIVFY 255 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~l~~~~e-~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V~~~ 255 (1196)
...++.+||++++ +++. ..+++.+||..++.-..... +......+.+..+||++++.++.........++..|
T Consensus 79 ~~~~~~~~g~i~v-~Gg~-----~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 79 PGISMDGNGQIVV-TGGN-----DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp CEEEECTTSCEEE-ECSS-----STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred eEEEEecCCcEEE-eecC-----CCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeee
Confidence 5678999999998 6753 34689999996665443221 223345788889999999998765433334578888
Q ss_pred eCCCeeEEEEEecc---C------CC-----CcEEEEEEccCCCeeEEEEccCCcceEEEEEecCCEEE
Q 000992 256 ERNGLERSSFDINE---Q------ID-----STVELLKWNCMSDLLAAVVRFEEYDSVKICFFSNNHWY 310 (1196)
Q Consensus 256 e~nGl~~~~f~l~~---~------~~-----~~V~~laWSpDg~~LAs~~~d~~~~~V~lW~~~n~~wy 310 (1196)
+.....-. .++. . +. ..-.-+.--++|+++..+.... .+.+.+..+..|.
T Consensus 153 d~~~~~W~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~---~~~~~~~~~~~~~ 216 (387)
T d1k3ia3 153 SPSSKTWT--SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTA---MNWYYTSGSGDVK 216 (387)
T ss_dssp ETTTTEEE--EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSE---EEEEECSTTCEEE
T ss_pred cCCCCcee--ecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCC---cEEecCcccCcEe
Confidence 86533211 1210 0 00 0001122345677766655544 5666667776663
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.89 E-value=0.92 Score=42.50 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=28.3
Q ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1011 TTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1011 ~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+|...|++++|+++|.+ |+.+ +++. ......+|..+...|+|.+|...|.+
T Consensus 52 ~~~~~~~~~~~A~~~~~k------al~~------~p~~-~~a~~~~g~~~~~~g~~~eA~~~~~~ 103 (159)
T d1a17a_ 52 LAYLRTECYGYALGDATR------AIEL------DKKY-IKGYYRRAASNMALGKFRAALRDYET 103 (159)
T ss_dssp HHHHHTTCHHHHHHHHHH------HHHH------CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHH------HHHH------cccc-hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445555555666555533 2321 1222 23456677777777777777666554
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.54 E-value=21 Score=38.97 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=22.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCceEEEEe
Q 000992 117 GGVRFISPSPDGDLLGVTTGFGQILVMT 144 (1196)
Q Consensus 117 ~~I~~~awSPDg~~LA~~s~d~tV~l~~ 144 (1196)
..-++++|.|||++|++--..|+|++++
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~ 54 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVN 54 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEEC
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEE
Confidence 3568999999999987765678898775
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=84.64 E-value=33 Score=38.82 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=52.6
Q ss_pred eEEeeecCCCEEEEEeCC----------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEE-ccC
Q 000992 24 QFSALDIEQNRLFFASSA----------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDY-LME 86 (1196)
Q Consensus 24 ~~~~~d~~~~~l~~~s~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~-spd 86 (1196)
...++|++.+.+|..+.+ ..|+..|. .+++..|.-.+.+.+.-.. .....+.-+.. ..+
T Consensus 244 ~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~--~TG~~~W~~Q~~~~D~Wd~--d~~~~~~l~d~~~~~ 319 (596)
T d1w6sa_ 244 GWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA--DTGEAKFGYQKTPHDEWDY--AGVNVMMLSEQKDKD 319 (596)
T ss_dssp SCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET--TTCCEEEEEESSTTCSSCC--CCCCCCEEEEEECTT
T ss_pred cccccccCCCeeeccccccccccccccccccccccccccccc--ccccccccccceeccccCC--ccccceeeeeccccc
Confidence 446899999999998543 24788888 7777766555444432111 11112222222 234
Q ss_pred C---CEEEEEECCCcEEEEECCCCeEE
Q 000992 87 K---EALIVGTSSGLLLLHSVDGNATE 110 (1196)
Q Consensus 87 ~---~~La~as~dG~I~lw~~~~~~~e 110 (1196)
| +.++.+..+|.+.++|..++++-
T Consensus 320 G~~~~~v~~~~k~G~~~vlDr~tG~~i 346 (596)
T d1w6sa_ 320 GKARKLLTHPDRNGIVYTLDRTDGALV 346 (596)
T ss_dssp SCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred cccccceeccccccceeeecCCCCcee
Confidence 4 36778889999999999988653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=84.62 E-value=3.1 Score=44.11 Aligned_cols=123 Identities=8% Similarity=0.048 Sum_probs=77.2
Q ss_pred EccCCceEEEeecccccc-----CCCCEEEEEECCCCcEEE---EeccCCCceeEEEEcCCCCeEEEEecCCCCCCCCeE
Q 000992 181 WRGDGKYFATLSEFCNSS-----KLHKRLKVWERDSGTLQA---SSELKAFMGAVLEWMPSGANIAAVYDRKSENKCPSI 252 (1196)
Q Consensus 181 WspDG~~lAsvss~d~~~-----~~d~~irVWd~~~G~l~~---~~e~~~~~v~slawsPdG~~IAs~s~d~~~~~~~~V 252 (1196)
=..||+.++ .++..+.. .....+.+||..+++-.. ...++.......++.++|++++.++.+. .++
T Consensus 27 ~~~~gkv~v-~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~ 100 (387)
T d1k3ia3 27 EPTSGRVLM-WSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA-----KKT 100 (387)
T ss_dssp ETTTTEEEE-EEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST-----TCE
T ss_pred EeeCCEEEE-EEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCC-----cce
Confidence 346888888 66643210 111247899998775432 1233444446778999999999887652 468
Q ss_pred EEEeCCCeeEEEEEec-cCCCCcEEEEEEccCCCeeEEEEccCCc---ceEEEEEecCCEEEE
Q 000992 253 VFYERNGLERSSFDIN-EQIDSTVELLKWNCMSDLLAAVVRFEEY---DSVKICFFSNNHWYL 311 (1196)
Q Consensus 253 ~~~e~nGl~~~~f~l~-~~~~~~V~~laWSpDg~~LAs~~~d~~~---~~V~lW~~~n~~wyl 311 (1196)
.+|+.....-. .++ .+....-...+..+||++++.++.+..+ ..+.+|+..+..|..
T Consensus 101 ~~yd~~~~~w~--~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 101 SLYDSSSDSWI--PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp EEEEGGGTEEE--ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred eEecCccCccc--ccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence 88885432221 122 1111223467788999999998865432 369999999999943
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.33 E-value=23 Score=35.60 Aligned_cols=161 Identities=11% Similarity=0.011 Sum_probs=90.3
Q ss_pred ceeEEeeecCCCEEEEEeC-CCcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEccCCCEEEEE-ECCCcE
Q 000992 22 ILQFSALDIEQNRLFFASS-ANNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLMEKEALIVG-TSSGLL 99 (1196)
Q Consensus 22 ~~~~~~~d~~~~~l~~~s~-~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~spd~~~La~a-s~dG~I 99 (1196)
.+.+++||..++.||.+.. .+.|+..+++.......... +.... ...+.++++-+.++.|-.+ ...+.|
T Consensus 31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~------~~~~~---~~~p~glAvD~~~~~lY~~d~~~~~I 101 (266)
T d1ijqa1 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------VISRD---IQAPDGLAVDWIHSNIYWTDSVLGTV 101 (266)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------EECSS---CSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE------EEeCC---CCCcceEEEeeccceEEEEecCCCEE
Confidence 6778999999999999854 55688777631111111111 11111 1356678887777767665 455789
Q ss_pred EEEECCCCeEEEee-eecCcEEEEEECCCCCEEEEEeC--CceEEEEeccCceeeeeecccccCccccccCccccCCCCe
Q 000992 100 LLHSVDGNATEVVG-RVEGGVRFISPSPDGDLLGVTTG--FGQILVMTHDWDLLYENPLEELAEGFDVHEPELSSSFSFK 176 (1196)
Q Consensus 100 ~lw~~~~~~~e~vg-~~~~~I~~~awSPDg~~LA~~s~--d~tV~l~~~~~d~~~~~~l~~~~~~~~Vs~tqf~~~~~~v 176 (1196)
.+.++++.....+. ........++..|....|-.+.. .+.|.-.+.++...... .... -...
T Consensus 102 ~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l--~~~~-------------~~~p 166 (266)
T d1ijqa1 102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL--VTEN-------------IQWP 166 (266)
T ss_dssp EEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE--ECSS-------------CSCE
T ss_pred EeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecc--cccc-------------ccee
Confidence 99999987654322 22345788888886655555432 22343333333222111 1000 0234
Q ss_pred EEEEEccCCceEEEeeccccccCCCCEEEEEECCCCc
Q 000992 177 SPISWRGDGKYFATLSEFCNSSKLHKRLKVWERDSGT 213 (1196)
Q Consensus 177 ~~isWspDG~~lAsvss~d~~~~~d~~irVWd~~~G~ 213 (1196)
..+++.+.++.|- .+. ...++|...+. +|.
T Consensus 167 ~gl~iD~~~~~lY-w~d-----~~~~~I~~~~~-dG~ 196 (266)
T d1ijqa1 167 NGITLDLLSGRLY-WVD-----SKLHSISSIDV-NGG 196 (266)
T ss_dssp EEEEEETTTTEEE-EEE-----TTTTEEEEEET-TSC
T ss_pred eEEEeeccccEEE-Eec-----CCcCEEEEEEC-CCC
Confidence 6799998877665 332 13578888888 553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.46 E-value=3.3 Score=39.33 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC----CH
Q 000992 1005 CFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG----DV 1080 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~----d~ 1080 (1196)
++.+.+..|...|+|++|++.|.+ |+.+- +.. ..+...+|..+...|+|.+|...|.+-+. ++
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~k------al~~~---p~~----~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~ 72 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGR------AITRN---PLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH------HHHHC---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhC---CCC----HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcH
Confidence 355667777888888888888744 44422 212 34667788888899999999988888543 11
Q ss_pred ---HHHHHHHHHhcCHHHHHHHH
Q 000992 1081 ---TNGISLLIDARDWEEALRVA 1100 (1196)
Q Consensus 1081 ---~~Ai~~y~~~~~w~eA~rla 1100 (1196)
-.-..+|.+.++|++|+...
T Consensus 73 ~a~~~lg~~~~~l~~~~~A~~~~ 95 (201)
T d2c2la1 73 KAHFFLGQCQLEMESYDEAIANL 95 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHH
Confidence 22234577778888887544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=83.41 E-value=0.63 Score=41.19 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Q 000992 960 SYHADCLNLMKKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFCCSSLEKAMKAYRASGNWSG 1034 (1196)
Q Consensus 960 ~~~~~ale~~~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~ 1034 (1196)
+.++.++.+... +.|.+|+..+ .+|.. ..++... +.+|.+.|++++|+.+|.+
T Consensus 18 ~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~-~~a~~~l-------------g~~~~~~~~~~~A~~~~~~------ 75 (112)
T d1hxia_ 18 NPMEEGLSMLKL--ANLAEAALAFEAVCQKEPER-EEAWRSL-------------GLTQAENEKDGLAIIALNH------ 75 (112)
T ss_dssp CHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTC-HHHHHHH-------------HHHHHHTTCHHHHHHHHHH------
T ss_pred HHHHHHHHHHHH--hhhHHHHHHHhhhccccccc-chhhhhh-------------hhhhhhhhhHHHhhccccc------
Confidence 345666655543 5677777665 24432 2233233 3344445555555555532
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1035 VLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1035 al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
|+.+- |+. .+....+|..+...|++.+|.+.+.+|+
T Consensus 76 al~~~------p~~-~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 76 ARMLD------PKD-IAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHC------TTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc------ccc-ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 23221 111 2345567777777777777777776653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.01 E-value=4.4 Score=37.89 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=47.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHh----hcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhcC-CH-
Q 000992 1007 EDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAG----LLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYCG-DV- 1080 (1196)
Q Consensus 1007 ~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~----~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl~-d~- 1080 (1196)
.+.+..|...|+|++|++.|.++-.......... ...+.+ ....++..+|..+.+.|+|.+|...|.+-+. ++
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~ 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhCh-hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence 4455556666777777777755432211111110 001111 1223555677777788888888887776432 11
Q ss_pred -----HHHHHHHHHhcCHHHHHH
Q 000992 1081 -----TNGISLLIDARDWEEALR 1098 (1196)
Q Consensus 1081 -----~~Ai~~y~~~~~w~eA~r 1098 (1196)
-.--.+|.+.++|++|+.
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~ 132 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALA 132 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHH
Confidence 122344556677777754
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.61 E-value=1.6 Score=37.19 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=35.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1009 AATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1009 Aa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
-+..|-..|+|++|+++| ++|+.+............+++..+|..+.+.|+|.+|...|.+
T Consensus 11 lG~~~~~~g~y~~A~~~~------~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWM------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp HHHHHHHTTCHHHHHHHH------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH------HHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 345555567777777776 4455544332211112235666777777777777777666555
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=82.55 E-value=6.4 Score=36.75 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.-+..|...|++++|++.|.. ++.+ ++... .....+|..+...|+|.+|...|.+
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~------al~l------~p~~~-~a~~~~~~~~~~l~~~~~A~~~~~~ 123 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDK------ALGL------DSANE-KGLYRRGEAQLLMNEFESAKGDFEK 123 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHH------CTTCH-HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHhhhcccchhhhhh------hhhc------ccchH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345666777777777776644 3332 22222 3445566666666666666555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=81.64 E-value=4.1 Score=35.46 Aligned_cols=58 Identities=16% Similarity=-0.003 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1005 CFEDAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1005 ~~~eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
.+-+.+..|.+.|++++|+.+|.+ ++.+- +.. ......+|..+...+++.+|...|.+
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~------al~~~---p~~----~~a~~~lg~~~~~~~~~~~A~~~~~~ 75 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEA------VCQKE---PER----EEAWRSLGLTQAENEKDGLAIIALNH 75 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHH------HHHHS---TTC----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhh------hcccc---ccc----chhhhhhhhhhhhhhhHHHhhccccc
Confidence 334567788888999999988844 44322 212 34566778888888888888877766
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=81.34 E-value=1.2 Score=44.38 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=21.1
Q ss_pred HHHhcChHHHHhhc-----CCcHHHHHHHHHHHHHHhcccCHHHHHHHHHh
Q 000992 970 KKYAQLFPLGLKLI-----TDPAKMEQVLEAWADHLSDVKCFEDAATTYFC 1015 (1196)
Q Consensus 970 ~~~~~ly~~AL~L~-----~d~~~~~~i~~~~A~~L~~~~~~~eAa~~y~~ 1015 (1196)
.+. +.|++|++.| .+|.. ..++..+|.-+...++|++|...|.+
T Consensus 48 ~~~-g~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~ 96 (259)
T d1xnfa_ 48 DSL-GLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAFDS 96 (259)
T ss_dssp HHT-TCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHC-CCHHHHHHHHHHhhccCCCC-HHHHhhhchHHHHHHHHHHhhhhhhH
Confidence 455 6667776666 24432 22333444444444444444444433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=81.04 E-value=49 Score=37.05 Aligned_cols=81 Identities=7% Similarity=0.078 Sum_probs=50.2
Q ss_pred EEeeecCCCEEEEEeCC-------------------CcEEEEecccccccccceeeccccccccccCCCCCCEEEEEEcc
Q 000992 25 FSALDIEQNRLFFASSA-------------------NNIYSAQLSSFQNERASIKTAISAEIEHIDLEPGDSITAFDYLM 85 (1196)
Q Consensus 25 ~~~~d~~~~~l~~~s~~-------------------~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~sp 85 (1196)
..++|++.+.+|..+.. ..|+..|. .+++..|.-.+++.++-..+. ...........
T Consensus 247 ~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~--~tG~~~W~~q~~~~d~wd~d~--~~~~~l~~~~~ 322 (573)
T d1kb0a2 247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP--DTGKYKWHYQETPGDNWDYTS--TQPMILADIKI 322 (573)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT--TTCCEEEEEESSTTCCSCCCC--CSCCEEEEEEE
T ss_pred cceEchhhCeeeeccCCCccccccccccccccccccceEEEecc--cchheeecccccCcccccccc--cceeeecceec
Confidence 46899999999987532 14677777 666666665554444322211 11222222333
Q ss_pred CC---CEEEEEECCCcEEEEECCCCeE
Q 000992 86 EK---EALIVGTSSGLLLLHSVDGNAT 109 (1196)
Q Consensus 86 d~---~~La~as~dG~I~lw~~~~~~~ 109 (1196)
++ ..++.++.+|.+..+|..+++.
T Consensus 323 ~g~~~~~v~~~~k~G~l~~lDr~tGe~ 349 (573)
T d1kb0a2 323 AGKPRKVILHAPKNGFFFVLDRTNGKF 349 (573)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCceeeeeeccccceeEEeccccccc
Confidence 34 4667788999999999988765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=80.95 E-value=12 Score=34.28 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=35.7
Q ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCC-----HHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000992 1010 ATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLG-----KDEVAKLAQELCEELQALGKPGEAAKIALD 1075 (1196)
Q Consensus 1010 a~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~-----~~~~~~l~~~la~~L~~~~~~~eAa~i~~~ 1075 (1196)
+..+...|+|++|+++| ++|+.+...++.. ..........+|..+...|+|.+|...+.+
T Consensus 16 g~~~~~~g~y~~Ai~~y------~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~ 80 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANC------RRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 80 (156)
T ss_dssp HHHHHHHTCHHHHHHHH------HHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH------HHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence 45556668888888877 4466666654311 001123455677777777777777655444
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=80.48 E-value=1.4 Score=41.12 Aligned_cols=57 Identities=25% Similarity=0.172 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhc
Q 000992 1008 DAATTYFCCSSLEKAMKAYRASGNWSGVLTVAGLLKLGKDEVAKLAQELCEELQALGKPGEAAKIALDYC 1077 (1196)
Q Consensus 1008 eAa~~y~~ag~~~kAl~~y~~~g~w~~al~la~~l~~~~~~~~~l~~~la~~L~~~~~~~eAa~i~~~yl 1077 (1196)
.-+..|.+.|++++|++.|.+ |+.+ +|... .....+|..+...|+|.+|...|.+.+
T Consensus 72 Nla~~~~~l~~~~~Al~~~~~------al~~------~p~~~-ka~~~~g~~~~~lg~~~~A~~~~~~al 128 (153)
T d2fbna1 72 NLATCYNKNKDYPKAIDHASK------VLKI------DKNNV-KALYKLGVANMYFGFLEEAKENLYKAA 128 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH------HHHH------STTCH-HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHhcccchhhhhhhc------cccc------cchhh-hhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777888888777643 3332 22222 456789999999999999999998854
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.38 E-value=7.9 Score=36.23 Aligned_cols=48 Identities=13% Similarity=-0.054 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhcC----C---HHHHHHHHHHhcCHHHHHHH
Q 000992 1052 LAQELCEELQALGKPGEAAKIALDYCG----D---VTNGISLLIDARDWEEALRV 1099 (1196)
Q Consensus 1052 l~~~la~~L~~~~~~~eAa~i~~~yl~----d---~~~Ai~~y~~~~~w~eA~rl 1099 (1196)
++..+|..+...|+|.+|...+.+-+. + +-....+|...++|++|+..
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 118 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD 118 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHH
Confidence 344456666667777777666554221 1 12233456666667766643
|