Citrus Sinensis ID: 001028
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1184 | 2.2.26 [Sep-21-2011] | |||||||
| O14099 | 425 | Uncharacterized RING fing | yes | no | 0.209 | 0.583 | 0.370 | 4e-46 | |
| Q96PM5 | 261 | RING finger and CHY zinc | yes | no | 0.152 | 0.689 | 0.446 | 3e-37 | |
| Q9CR50 | 261 | RING finger and CHY zinc | yes | no | 0.147 | 0.670 | 0.447 | 4e-36 | |
| Q6IRP0 | 312 | RING finger protein 126-B | N/A | no | 0.042 | 0.160 | 0.411 | 5e-05 | |
| Q6DIP3 | 311 | RING finger protein 126 O | no | no | 0.040 | 0.154 | 0.450 | 6e-05 | |
| Q7T0Q3 | 312 | RING finger protein 126-A | N/A | no | 0.040 | 0.153 | 0.450 | 0.0001 | |
| Q9D0C1 | 305 | E3 ubiquitin-protein liga | no | no | 0.040 | 0.157 | 0.470 | 0.0007 | |
| Q9Y4L5 | 304 | E3 ubiquitin-protein liga | no | no | 0.051 | 0.200 | 0.406 | 0.0009 |
| >sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 | Back alignment and function desciption |
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Score = 187 bits (476), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/259 (37%), Positives = 147/259 (56%), Gaps = 11/259 (4%)
Query: 919 QNELEAEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSP 978
Q+ + +I ++ S L +RKA L+Q ++ S ++ ++ + D + DL
Sbjct: 74 QDSVREKIHEIQSMSQLSEKRKALLMQKMLMSGYLKYRRTHKKESDENQLSSSDL---EK 130
Query: 979 SFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKV 1038
++ D E+++ GC HY RNCK++ C + +TCR CH+ DH ++R A M+CM C KV
Sbjct: 131 TYYDKEQEILGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKV 190
Query: 1039 QPVGPVCTTLSCSGLSMAKYYCGICKFFDDE--RVVYHCPFCNLCRVGRGLGVDFFHCMT 1096
QP C C M +YYC CK +DD+ + YHC C +CR+GRGLG D+FHC T
Sbjct: 191 QPAAQYCKY--CKN-CMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKT 247
Query: 1097 CNCCLAKKLVD-HKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHY 1155
C CL + + H+C E+ + NCPIC +++F S V L C H +H C + Y ++Y
Sbjct: 248 CGLCLPISVFNTHRCIERSTDCNCPICGEYMFNSRERVIFLSCSHPLHQRCHEEYIRTNY 307
Query: 1156 ICPICSKSLGDMAVSPLFR 1174
CP C K++ + V+ LFR
Sbjct: 308 RCPTCYKTI--INVNSLFR 324
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1184 | ||||||
| 255572130 | 1306 | zinc finger protein, putative [Ricinus c | 0.977 | 0.885 | 0.792 | 0.0 | |
| 224108445 | 1224 | predicted protein [Populus trichocarpa] | 0.961 | 0.930 | 0.810 | 0.0 | |
| 225424035 | 1237 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.932 | 0.786 | 0.0 | |
| 306408056 | 1233 | TMV-associated RING finger protein [Nico | 0.946 | 0.909 | 0.722 | 0.0 | |
| 449439089 | 1256 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.923 | 0.692 | 0.0 | |
| 449497569 | 1256 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.923 | 0.691 | 0.0 | |
| 356513068 | 1236 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.933 | 0.685 | 0.0 | |
| 225455984 | 1234 | PREDICTED: uncharacterized protein LOC10 | 0.940 | 0.902 | 0.711 | 0.0 | |
| 356531194 | 1238 | PREDICTED: uncharacterized protein LOC10 | 0.978 | 0.936 | 0.679 | 0.0 | |
| 356524429 | 1234 | PREDICTED: uncharacterized protein LOC10 | 0.972 | 0.932 | 0.692 | 0.0 |
| >gi|255572130|ref|XP_002527005.1| zinc finger protein, putative [Ricinus communis] gi|223533640|gb|EEF35377.1| zinc finger protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1909 bits (4946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 945/1192 (79%), Positives = 1030/1192 (86%), Gaps = 35/1192 (2%)
Query: 1 MAAPFAEGGGGGGGVAVMPGPVNPIDASTQSK-------TCLKHSALKSPILIFLFFHKA 53
MA PF+ G GGGVAVM GPV ID S+ S K+SALKSPILIFLFFHKA
Sbjct: 1 MATPFS--GVDGGGVAVMAGPVKAIDPSSTSTPSKNNNNNINKNSALKSPILIFLFFHKA 58
Query: 54 IKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKN 113
I+SELD LHRAAMAFAT+ GG DI LL+RYHF RAIYKHHCNAEDEVIFPALDIRVKN
Sbjct: 59 IRSELDGLHRAAMAFATSTGG--DIKPLLQRYHFLRAIYKHHCNAEDEVIFPALDIRVKN 116
Query: 114 IARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQHMSKEEEQVF 173
+ARTYSLEHEGESVLFDQL+ELLNS+ +NEESYRRELAS TGALQTSISQHMSKEEEQVF
Sbjct: 117 VARTYSLEHEGESVLFDQLYELLNSNKQNEESYRRELASRTGALQTSISQHMSKEEEQVF 176
Query: 174 PLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMRKCLCKIIPKEKL 233
PLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSS+SS+E+QDM KCLCKIIPKEKL
Sbjct: 177 PLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSVSSEEYQDMHKCLCKIIPKEKL 236
Query: 234 LRQVIFAWMEGVKVSD--KSCEDNLEHRCQ-----------RWFSCACESSRSSKRKYVE 280
L QVIFAWM+G K+SD C+D+ + C+ + +CACESSR KRKY+E
Sbjct: 237 LHQVIFAWMKGAKLSDMCTGCKDDSKILCEDSGRPALICESKKINCACESSRIGKRKYME 296
Query: 281 LSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEV 340
L+ DL DS+ PID+I+LWH AI+RELNDIAEAARKIQLSGDF DLSAFN+RLQFIAEV
Sbjct: 297 LTSDLADSTSFHPIDDILLWHAAIRRELNDIAEAARKIQLSGDFYDLSAFNERLQFIAEV 356
Query: 341 CIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLC 400
CIFHSIAEDKVIFPAVD EL+FA+EHAEEEIQFDKLRCLIESIQSAGAN+S EFYTKLC
Sbjct: 357 CIFHSIAEDKVIFPAVDAELNFAEEHAEEEIQFDKLRCLIESIQSAGANTSHTEFYTKLC 416
Query: 401 SQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPLKLIECVLPWLVGS 460
+QAD IM SIQKHF+NEE QVLPLAR+HFS KRQRELLYQSLCVMPLKLIECVLPWLVGS
Sbjct: 417 TQADHIMDSIQKHFQNEEAQVLPLARKHFSAKRQRELLYQSLCVMPLKLIECVLPWLVGS 476
Query: 461 LSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAIGCCPAKTLAASKE 520
LSEEEA+SFLQN+YMAAPASDSAL+TLF+GWACKG R+ CLSS AIGCCPA+ L ++E
Sbjct: 477 LSEEEAKSFLQNMYMAAPASDSALVTLFSGWACKGCPRSTCLSSGAIGCCPARILTGAQE 536
Query: 521 LKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLEDCDACSGAKSVNTP 580
DIK+ C C S +EK +Q +E DD +RPVKRGN +L ED +AC +++ P
Sbjct: 537 ---DIKKSCCDCNPTLSINEKPSFIQTEEVDDRRRPVKRGNLLLQEDNNACHSLETI--P 591
Query: 581 SSSRSNQSCCVPGLGVSSSNLG-SSLAAAKSLRSLSFSPSAPSLNSSLFNWETDLSSADI 639
N++CCVPGLGV++SNLG SSL+AAKSLRSL+FSPSAPS+NSSLFNWETD+S D
Sbjct: 592 KFPCGNKACCVPGLGVNNSNLGISSLSAAKSLRSLTFSPSAPSINSSLFNWETDISPTDT 651
Query: 640 GCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFRLLWGLYRAHSNAE 699
CASRPIDNIFKFHKAIRKDLEYLD ESGKLNDCNE LRQFTGRFRLLWGLYRAHSNAE
Sbjct: 652 TCASRPIDNIFKFHKAIRKDLEYLDVESGKLNDCNEALLRQFTGRFRLLWGLYRAHSNAE 711
Query: 700 DDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHECL-STDLTGDLTR 758
DDIVFPALESKETL NVSHSYTLDHKQEEKLFEDISSALSELT+ ECL S ++ DLT
Sbjct: 712 DDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSALSELTKFQECLKSARISDDLTG 771
Query: 759 NSLE-SCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELWPLFDRHFSVEEQDK 817
N + S ++T R+YNE AT+LQGMCKSIRVTLDQHVFREELELWPLFD HFSVEEQDK
Sbjct: 772 NGYDASGHSDDTFRQYNELATKLQGMCKSIRVTLDQHVFREELELWPLFDMHFSVEEQDK 831
Query: 818 IVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMFSEWLNEWWEGPPAP 877
IVGRIIG+TGAEVLQSMLPWVTSALT EEQN MMDTWK ATKNTMFSEWLNEWWEG
Sbjct: 832 IVGRIIGSTGAEVLQSMLPWVTSALTLEEQNKMMDTWKNATKNTMFSEWLNEWWEGT--- 888
Query: 878 AAAAHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELEAEIRKVSRDSTLDP 937
+AAA +ATSESCISLG+D+HESLDHSDHTFKPGW DIFRMNQNELEAEIRKVSRDS+LDP
Sbjct: 889 SAAASQATSESCISLGADLHESLDHSDHTFKPGWKDIFRMNQNELEAEIRKVSRDSSLDP 948
Query: 938 RRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDAEKQVFGCEHYKRNC 997
RRKAYLIQNLMTSRWIA+QQKS QAR E SN EDL GC PSFRD EKQ+FGCEHYKRNC
Sbjct: 949 RRKAYLIQNLMTSRWIAAQQKSPQARTDECSNSEDLLGCFPSFRDLEKQIFGCEHYKRNC 1008
Query: 998 KLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAK 1057
KLRAACC KLFTCRFCHDKVSDHSMDRKATTEMMCMRCL +QP+GP CTT SC GL MAK
Sbjct: 1009 KLRAACCSKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLNIQPIGPACTTPSCGGLQMAK 1068
Query: 1058 YYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVDHKCREKGLET 1117
YYC ICKFFDDER +YHCPFCNLCRVG GLGVDFFHCM CNCCLA KL+DHKCREKG+E
Sbjct: 1069 YYCSICKFFDDERDIYHCPFCNLCRVGNGLGVDFFHCMKCNCCLAMKLLDHKCREKGMEM 1128
Query: 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAV 1169
NCPICCD LFTSS +V+ALPCGHFMHS+CFQAYTCSHYICPICSKSLGDM+V
Sbjct: 1129 NCPICCDCLFTSSLSVKALPCGHFMHSNCFQAYTCSHYICPICSKSLGDMSV 1180
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108445|ref|XP_002314849.1| predicted protein [Populus trichocarpa] gi|222863889|gb|EEF01020.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225424035|ref|XP_002279535.1| PREDICTED: uncharacterized protein LOC100255880 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|306408056|dbj|BAJ16529.1| TMV-associated RING finger protein [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|449439089|ref|XP_004137320.1| PREDICTED: uncharacterized protein LOC101215023 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449497569|ref|XP_004160438.1| PREDICTED: uncharacterized protein LOC101224245 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356513068|ref|XP_003525236.1| PREDICTED: uncharacterized protein LOC100801725 [Glycine max] | Back alignment and taxonomy information |
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| >gi|225455984|ref|XP_002278705.1| PREDICTED: uncharacterized protein LOC100254283 [Vitis vinifera] gi|297734230|emb|CBI15477.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356531194|ref|XP_003534163.1| PREDICTED: uncharacterized protein LOC100776832 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356524429|ref|XP_003530831.1| PREDICTED: uncharacterized protein LOC100803002 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1184 | ||||||
| TAIR|locus:2089678 | 1254 | BTS "BRUTUS" [Arabidopsis thal | 0.941 | 0.889 | 0.636 | 0.0 | |
| TAIR|locus:2011266 | 1254 | AT1G18910 [Arabidopsis thalian | 0.222 | 0.209 | 0.585 | 1.1e-211 | |
| TAIR|locus:2027176 | 1259 | AT1G74770 [Arabidopsis thalian | 0.217 | 0.204 | 0.590 | 2e-211 | |
| POMBASE|SPAC2F3.16 | 425 | SPAC2F3.16 "ubiquitin-protein | 0.235 | 0.656 | 0.353 | 1.3e-49 | |
| ASPGD|ASPL0000053938 | 522 | AN10185 [Emericella nidulans ( | 0.152 | 0.346 | 0.465 | 1.2e-48 | |
| DICTYBASE|DDB_G0281595 | 342 | rchy "RING finger and CHY zinc | 0.157 | 0.546 | 0.434 | 8.2e-44 | |
| UNIPROTKB|A4IFE2 | 261 | RCHY1 "RCHY1 protein" [Bos tau | 0.149 | 0.678 | 0.448 | 1.7e-43 | |
| UNIPROTKB|J9NZR5 | 259 | RCHY1 "Uncharacterized protein | 0.153 | 0.702 | 0.446 | 1.7e-43 | |
| UNIPROTKB|Q96PM5 | 261 | RCHY1 "RING finger and CHY zin | 0.146 | 0.666 | 0.455 | 4.6e-43 | |
| RGD|1359180 | 261 | Rchy1 "ring finger and CHY zin | 0.146 | 0.666 | 0.455 | 1.6e-42 |
| TAIR|locus:2089678 BTS "BRUTUS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3769 (1331.8 bits), Expect = 0., P = 0.
Identities = 729/1146 (63%), Positives = 852/1146 (74%)
Query: 42 SPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDE 101
SPILIFLFFHKA+ SEL+ LHR A+ FAT G D+ L ERY F R+IYKHHCNAEDE
Sbjct: 53 SPILIFLFFHKAVCSELEALHRLALEFAT--GHHVDLRLLRERYRFLRSIYKHHCNAEDE 110
Query: 102 VIFPALDIRVKNIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSI 161
VIF ALDIRVKN+A+TYSLEH+GES LFD LFELLNS+ +ESYRRELA TGALQTS+
Sbjct: 111 VIFSALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSATETDESYRRELARSTGALQTSV 170
Query: 162 SQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMR 221
SQH++KE++QVFPLLIEKF +EEQA +VW+FLCSIPVNM+A FLPW+SSSIS DE ++M+
Sbjct: 171 SQHLAKEQKQVFPLLIEKFKYEEQAYIVWRFLCSIPVNMLAVFLPWISSSISVDESKEMQ 230
Query: 222 KCLCKIIPKEKLLRQVIFAWMEGVKVSDKSC--EDNLEHRCQRWFS-----------CAC 268
CL KI+P EKLL+QVIF W+ G + SC ED++ C S CAC
Sbjct: 231 TCLKKIVPGEKLLQQVIFTWLGGKSNTVASCRIEDSMFQCCLDSSSSMLPCKASREQCAC 290
Query: 269 ESSRSSKRKYVELSYDLTDSSMSCPIDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLS 328
E S+ KRKY EL+ + S P+DEI LWH +I +E+ +IA+ ARKIQLSGDFSDLS
Sbjct: 291 EGSKIGKRKYPELT-NFGSSDTLHPVDEIKLWHKSINKEMKEIADEARKIQLSGDFSDLS 349
Query: 329 AFNKRLQFIAEVCIFHSIAEDKVIFPAVDVELSFAQEHAEEEIQFDKLRCLIESIQSAGA 388
AF++RLQ+IAEVCIFHS+AEDK+IFPAVD E SF++EH EEE QF++ RCLIE+I+SAGA
Sbjct: 350 AFDERLQYIAEVCIFHSLAEDKIIFPAVDGEFSFSEEHDEEENQFNEFRCLIENIKSAGA 409
Query: 389 NS-STAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSLCVMPL 447
+S S AEFYTKLCS AD IM +IQ+HF NEE+QVLPLAR++FS KRQ+ELLYQSLC+MPL
Sbjct: 410 SSTSAAEFYTKLCSHADQIMETIQRHFHNEEIQVLPLARKNFSFKRQQELLYQSLCIMPL 469
Query: 448 KLIECVLPWLVGSLSEEEARSFLQNIYMAAPASDSALITLFAGWACKGHSRNVCLSSSAI 507
+LIE VLPWL SL+E+EA++FL+N+ AP SD AL+TLF+GWACKG CLS +
Sbjct: 470 RLIERVLPWLTASLTEDEAKNFLKNLQAGAPKSDVALVTLFSGWACKGRKAGECLSPNGN 529
Query: 508 GCCPAKTLAASKELKEDIKQPFCACTCKSSADEKLMLVQEDEADDEKRPVKRGNSMLLED 567
G CP KTL+ KE+ + C S + + Q+ KRP KR + E
Sbjct: 530 GLCPVKTLSNIKEVNLQSCNACASVPCTSRSTKSCCQHQD------KRPAKRTAVLSCEK 583
Query: 568 CDACSGAKSVNTPSSSRSNQSCCVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXX 626
+ N S + +SCCVP
Sbjct: 584 KTTPHSTEVANGCKPSGNGRSCCVPDLGVNNNCLELGSLPAAKAMRSSSLNSAAPALNSS 643
Query: 627 XXXWETDLSSADIGCASRPIDNIFKFHKAIRKDLEYLDGESGKLNDCNETFLRQFTGRFR 686
WE D +S G A RP+ IFKFHKAI KDLE+LD ESGKL DC+ TF+RQF GRF
Sbjct: 644 LFIWEMDSNSFGTGHAERPVATIFKFHKAISKDLEFLDVESGKLIDCDGTFIRQFIGRFH 703
Query: 687 LLWGLYRAHSNAEDDIVFPALESKETLSNVSHSYTLDHKQEEKLFEDISSALSELTELHE 746
LLWG Y+AHSNAEDDI+FPALESKETL NVSHSYTLDHKQEEKLF DI S L+EL+ LHE
Sbjct: 704 LLWGFYKAHSNAEDDILFPALESKETLHNVSHSYTLDHKQEEKLFGDIYSVLTELSILHE 763
Query: 747 CLSTD-LTGDLTRNSL--ESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELELW 803
L +D + D+ + D + +KYNE AT+LQGMCKSI++TLDQH+F EELELW
Sbjct: 764 KLQSDSMMEDIAQTDTVRTDIDNGDCNKKYNELATKLQGMCKSIKITLDQHIFLEELELW 823
Query: 804 PLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNTMMDTWKQATKNTMF 863
PLFD+HFS++EQDKIVGRIIGTTGAEVLQSMLPWVTSAL+++EQN MMDTWKQATKNTMF
Sbjct: 824 PLFDKHFSIQEQDKIVGRIIGTTGAEVLQSMLPWVTSALSEDEQNRMMDTWKQATKNTMF 883
Query: 864 SEWLNEWWEGXXXXXXXXHKATSESCISLGSDVHESLDHSDHTFKPGWNDIFRMNQNELE 923
EWLNE W+G TS+ +D E LD S FKPGW DIFRMNQNELE
Sbjct: 884 DEWLNECWKGSPDSSSTE---TSKPSPQKDNDHQEILDQSGELFKPGWKDIFRMNQNELE 940
Query: 924 AEIRKVSRDSTLDPRRKAYLIQNLMTSRWIASQQKSLQARDSEISNGEDLFGCSPSFRDA 983
AEIRKV +DSTLDPRRK YL+QN TSRWIA+QQK + ++ + NG+ GCSPSFRD
Sbjct: 941 AEIRKVYQDSTLDPRRKDYLVQNWRTSRWIAAQQKLPKEAETAV-NGDVELGCSPSFRDP 999
Query: 984 EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1043
EKQ++GCEHYKRNCKLRAACC +LFTCRFCHDKVSDHSMDRK TEM+CMRCLKVQPVGP
Sbjct: 1000 EKQIYGCEHYKRNCKLRAACCDQLFTCRFCHDKVSDHSMDRKLVTEMLCMRCLKVQPVGP 1059
Query: 1044 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1103
+CTT SC G MAK+YC ICK FDDER VYHCPFCNLCRVG GLG+DFFHCMTCNCCL
Sbjct: 1060 ICTTPSCDGFPMAKHYCSICKLFDDERAVYHCPFCNLCRVGEGLGIDFFHCMTCNCCLGM 1119
Query: 1104 KLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKS 1163
KLV+HKC EK LETNCPICC+FLFTSS VRALPCGH+MHS CFQAYTCSHY CPIC KS
Sbjct: 1120 KLVNHKCLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKS 1179
Query: 1164 LGDMAV 1169
LGDMAV
Sbjct: 1180 LGDMAV 1185
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| TAIR|locus:2011266 AT1G18910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2027176 AT1G74770 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC2F3.16 SPAC2F3.16 "ubiquitin-protein ligase E3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000053938 AN10185 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0281595 rchy "RING finger and CHY zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9NZR5 RCHY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1184 | |||
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 2e-31 | |
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 5e-27 | |
| pfam05495 | 74 | pfam05495, zf-CHY, CHY zinc finger | 3e-26 | |
| cd12108 | 130 | cd12108, Hr-like, Hemerythrin-like domain | 6e-18 | |
| pfam01814 | 129 | pfam01814, Hemerythrin, Hemerythrin HHE cation bin | 1e-10 | |
| pfam13639 | 46 | pfam13639, zf-RING_2, Ring finger domain | 9e-09 | |
| cd12109 | 158 | cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL | 2e-07 | |
| pfam01814 | 129 | pfam01814, Hemerythrin, Hemerythrin HHE cation bin | 6e-06 | |
| pfam13923 | 45 | pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI | 3e-04 | |
| cd00162 | 45 | cd00162, RING, RING-finger (Really Interesting New | 4e-04 | |
| smart00184 | 40 | smart00184, RING, Ring finger | 4e-04 | |
| pfam01814 | 129 | pfam01814, Hemerythrin, Hemerythrin HHE cation bin | 7e-04 | |
| COG5592 | 171 | COG5592, COG5592, Uncharacterized conserved protei | 0.001 |
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-31
Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 46 IFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFP 105
+ H+AI+ EL L R A A A GG D L ER+ F HH AE+E++FP
Sbjct: 2 LLKLEHRAIRRELGRLARLAGALAA--GGPDDARALAERFRFLATELHHHHTAEEELLFP 59
Query: 106 ALDIRVK--NIARTYSLEHEGESVLFDQLFELLNSSMRNEESYRRELASCTGALQTSISQ 163
AL RV + EH L +L LL + + + ELA+ AL+T++ +
Sbjct: 60 ALRERVPLAAVLDALEAEHAEIDELLARLEALLPALLAGDAEDAEELAAALEALRTALRE 119
Query: 164 HMSKEEEQVFP 174
H+ +EEE++FP
Sbjct: 120 HLDEEEEELFP 130
|
Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis. Length = 130 |
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|213983 cd12108, Hr-like, Hemerythrin-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain | Back alignment and domain information |
|---|
| >gnl|CDD|213984 cd12109, Hr_FBXL5, Hemerythrin-like domain of FBXL5-like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) | Back alignment and domain information |
|---|
| >gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >gnl|CDD|214546 smart00184, RING, Ring finger | Back alignment and domain information |
|---|
| >gnl|CDD|216718 pfam01814, Hemerythrin, Hemerythrin HHE cation binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|227879 COG5592, COG5592, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1184 | |||
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 100.0 | |
| PF05495 | 71 | zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc | 99.8 | |
| PF01814 | 133 | Hemerythrin: Hemerythrin HHE cation binding domain | 99.2 | |
| PF13639 | 44 | zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C | 99.17 | |
| PF01814 | 133 | Hemerythrin: Hemerythrin HHE cation binding domain | 99.17 | |
| COG4357 | 105 | Zinc finger domain containing protein (CHY type) [ | 98.93 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 98.92 | |
| COG5243 | 491 | HRD1 HRD ubiquitin ligase complex, ER membrane com | 98.91 | |
| PF12678 | 73 | zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 | 98.85 | |
| PF12861 | 85 | zf-Apc11: Anaphase-promoting complex subunit 11 RI | 98.8 | |
| PRK10992 | 220 | iron-sulfur cluster repair di-iron protein; Provis | 98.77 | |
| TIGR03652 | 216 | FeS_repair_RIC iron-sulfur cluster repair di-iron | 98.66 | |
| COG5540 | 374 | RING-finger-containing ubiquitin ligase [Posttrans | 98.63 | |
| PRK10992 | 220 | iron-sulfur cluster repair di-iron protein; Provis | 98.63 | |
| PHA02929 | 238 | N1R/p28-like protein; Provisional | 98.61 | |
| cd00162 | 45 | RING RING-finger (Really Interesting New Gene) dom | 98.55 | |
| COG3945 | 189 | Uncharacterized conserved protein [Function unknow | 98.5 | |
| TIGR03652 | 216 | FeS_repair_RIC iron-sulfur cluster repair di-iron | 98.48 | |
| PF13923 | 39 | zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); | 98.41 | |
| COG5194 | 88 | APC11 Component of SCF ubiquitin ligase and anapha | 98.35 | |
| PF13920 | 50 | zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); | 98.32 | |
| PRK13276 | 224 | cell wall biosynthesis protein ScdA; Provisional | 98.31 | |
| PRK13276 | 224 | cell wall biosynthesis protein ScdA; Provisional | 98.29 | |
| smart00184 | 39 | RING Ring finger. E3 ubiquitin-protein ligase acti | 98.16 | |
| KOG1493 | 84 | consensus Anaphase-promoting complex (APC), subuni | 98.12 | |
| KOG0802 | 543 | consensus E3 ubiquitin ligase [Posttranslational m | 98.08 | |
| PLN03208 | 193 | E3 ubiquitin-protein ligase RMA2; Provisional | 98.05 | |
| PF14634 | 44 | zf-RING_5: zinc-RING finger domain | 98.05 | |
| COG2846 | 221 | Regulator of cell morphogenesis and NO signaling [ | 98.04 | |
| PF00097 | 41 | zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I | 98.03 | |
| PHA02926 | 242 | zinc finger-like protein; Provisional | 98.02 | |
| KOG0320 | 187 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.96 | |
| PF15227 | 42 | zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: | 97.92 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 97.84 | |
| PF13445 | 43 | zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. | 97.69 | |
| KOG2930 | 114 | consensus SCF ubiquitin ligase, Rbx1 component [Po | 97.64 | |
| KOG0317 | 293 | consensus Predicted E3 ubiquitin ligase, integral | 97.62 | |
| KOG0828 | 636 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.6 | |
| KOG0804 | 493 | consensus Cytoplasmic Zn-finger protein BRAP2 (BRC | 97.57 | |
| COG2846 | 221 | Regulator of cell morphogenesis and NO signaling [ | 97.53 | |
| TIGR00599 | 397 | rad18 DNA repair protein rad18. This family is bas | 97.52 | |
| KOG0823 | 230 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.51 | |
| COG3945 | 189 | Uncharacterized conserved protein [Function unknow | 97.48 | |
| smart00744 | 49 | RINGv The RING-variant domain is a C4HC3 zinc-fing | 97.36 | |
| KOG1734 | 328 | consensus Predicted RING-containing E3 ubiquitin l | 97.24 | |
| KOG2164 | 513 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.23 | |
| PF11793 | 70 | FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. | 97.23 | |
| TIGR00570 | 309 | cdk7 CDK-activating kinase assembly factor MAT1. A | 97.22 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.2 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 97.03 | |
| COG5574 | 271 | PEX10 RING-finger-containing E3 ubiquitin ligase [ | 96.93 | |
| KOG0825 | 1134 | consensus PHD Zn-finger protein [General function | 96.92 | |
| KOG2177 | 386 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.85 | |
| KOG0287 | 442 | consensus Postreplication repair protein RAD18 [Re | 96.71 | |
| KOG4265 | 349 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.64 | |
| KOG1940 | 276 | consensus Zn-finger protein [General function pred | 96.6 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 96.48 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.37 | |
| KOG4172 | 62 | consensus Predicted E3 ubiquitin ligase [Posttrans | 96.25 | |
| COG5432 | 391 | RAD18 RING-finger-containing E3 ubiquitin ligase [ | 96.12 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.98 | |
| KOG1039 | 344 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.91 | |
| COG5219 | 1525 | Uncharacterized conserved protein, contains RING Z | 95.76 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 95.45 | |
| KOG2879 | 298 | consensus Predicted E3 ubiquitin ligase [Posttrans | 95.31 | |
| PF14835 | 65 | zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM | 94.71 | |
| KOG4445 | 368 | consensus Uncharacterized conserved protein, conta | 94.37 | |
| KOG0978 | 698 | consensus E3 ubiquitin ligase involved in syntaxin | 94.33 | |
| KOG0311 | 381 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.06 | |
| PF11789 | 57 | zf-Nse: Zinc-finger of the MIZ type in Nse subunit | 94.03 | |
| KOG1785 | 563 | consensus Tyrosine kinase negative regulator CBL [ | 93.94 | |
| PF14570 | 48 | zf-RING_4: RING/Ubox like zinc-binding domain; PDB | 93.75 | |
| PF10367 | 109 | Vps39_2: Vacuolar sorting protein 39 domain 2; Int | 93.23 | |
| KOG0824 | 324 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.96 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 92.68 | |
| KOG3268 | 234 | consensus Predicted E3 ubiquitin ligase [Posttrans | 92.6 | |
| KOG0297 | 391 | consensus TNF receptor-associated factor [Signal t | 92.47 | |
| PF05883 | 134 | Baculo_RING: Baculovirus U-box/Ring-like domain; I | 92.25 | |
| KOG3039 | 303 | consensus Uncharacterized conserved protein [Funct | 92.01 | |
| KOG4275 | 350 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.9 | |
| PF12906 | 47 | RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. | 91.5 | |
| KOG2272 | 332 | consensus Focal adhesion protein PINCH-1, contains | 91.11 | |
| KOG1571 | 355 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.61 | |
| KOG3970 | 299 | consensus Predicted E3 ubiquitin ligase [Posttrans | 90.59 | |
| KOG4739 | 233 | consensus Uncharacterized protein involved in syna | 90.18 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 89.63 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 88.91 | |
| PF14447 | 55 | Prok-RING_4: Prokaryotic RING finger family 4 | 88.87 | |
| PF07800 | 162 | DUF1644: Protein of unknown function (DUF1644); In | 88.09 | |
| KOG2660 | 331 | consensus Locus-specific chromosome binding protei | 87.33 | |
| PF04641 | 260 | Rtf2: Rtf2 RING-finger | 87.07 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 87.01 | |
| KOG3800 | 300 | consensus Predicted E3 ubiquitin ligase containing | 86.6 | |
| KOG1814 | 445 | consensus Predicted E3 ubiquitin ligase [Posttrans | 86.53 | |
| COG5175 | 480 | MOT2 Transcriptional repressor [Transcription] | 86.07 | |
| KOG4159 | 398 | consensus Predicted E3 ubiquitin ligase [Posttrans | 85.52 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.46 | |
| PHA02862 | 156 | 5L protein; Provisional | 83.78 | |
| COG5152 | 259 | Uncharacterized conserved protein, contains RING a | 83.47 | |
| COG5236 | 493 | Uncharacterized conserved protein, contains RING Z | 82.97 | |
| KOG0827 | 465 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.95 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 82.25 | |
| KOG4692 | 489 | consensus Predicted E3 ubiquitin ligase [Posttrans | 82.2 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 81.97 | |
| KOG1813 | 313 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.62 |
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=391.40 Aligned_cols=199 Identities=47% Similarity=1.054 Sum_probs=189.2
Q ss_pred CCCCccccccccCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCccc
Q 001028 976 CSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSM 1055 (1184)
Q Consensus 976 ~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~ 1055 (1184)
..+++.|+...++||+||+|+|++++|||+++|+|++||++..+|.++|+.+.+++|+.|.++||++++|.+ | +..+
T Consensus 21 ~~~~~~d~~~~~~~c~hy~r~~~~~a~ccd~~~~C~hCH~~s~~h~~~r~~v~~~~C~~C~~~q~~~~~c~~--c-~~~~ 97 (276)
T KOG1940|consen 21 IHSDAEDEIAFPYGCPHYRRNCKSRAPCCDREITCRHCHNESEDHDLDRKTVYELLCMKCRKIQPVGQICSN--C-HVEL 97 (276)
T ss_pred cccccccccccccCCchhhhccccccccccceeeeEEecChhhhcccchhhhhhhhhhhHHhhhhhhhcccc--c-hhhh
Confidence 346788999999999999999999999999999999999999999999999999999999999999999998 4 7789
Q ss_pred ceEecccccCccCC-CCcccCCCCCccccCCCCCccccccCCCcccccccc-ccccccccCccCcccccccccccCCCce
Q 001028 1056 AKYYCGICKFFDDE-RVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATV 1133 (1184)
Q Consensus 1056 a~Y~C~iC~l~dd~-k~~yHC~~CgiCRvG~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v 1133 (1184)
++|||.+|++|||+ ..||||++|||||+|.++ |||||++|+.|+++.+ +.|+|+|++.+.+||||.+++|.+...+
T Consensus 98 g~~~c~~C~l~dd~~~~~~hC~~C~icr~g~~~--~~fhc~~c~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~s~~~~ 175 (276)
T KOG1940|consen 98 GEYYCLICKLFDDDPSKQYHCDLCGICREGLGL--DFFHCKKCKACLSAYLSNWHKCVERSSEFNCPICKEYLFLSFEDA 175 (276)
T ss_pred hhhcCcccccccccccceecccccccccccccc--chhHHhhhHhHHhhhcccccchhhhcccCCCchhHHHhccccccC
Confidence 99999999999988 599999999999999876 9999999999999998 6699999999999999999999999999
Q ss_pred EecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccccccccchhh
Q 001028 1134 RALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSPLFRTTSVVL 1180 (1184)
Q Consensus 1134 ~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~~~~~~~v~~ 1180 (1184)
..++|||.+|..|++.+...+|+||+|.+ ++||..||++.+.+|+-
T Consensus 176 ~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~~~~~~~d~~l~~ 221 (276)
T KOG1940|consen 176 GVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMSHYFRKLDKELAG 221 (276)
T ss_pred CccCcccchHHHHHHHHhccCCCCCcccc-hHHHHHHHHHHHHHHhc
Confidence 99999999999999999988899999999 99999999999888864
|
|
| >PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues | Back alignment and domain information |
|---|
| >PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A | Back alignment and domain information |
|---|
| >PF01814 Hemerythrin: Hemerythrin HHE cation binding domain; InterPro: IPR012312 The haemerythrin family is composed of haemerythrin proteins found in invertebrates, and a broader collection of bacterial and archaeal homologues | Back alignment and domain information |
|---|
| >COG4357 Zinc finger domain containing protein (CHY type) [Function unknown] | Back alignment and domain information |
|---|
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger | Back alignment and domain information |
|---|
| >PRK10992 iron-sulfur cluster repair di-iron protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein | Back alignment and domain information |
|---|
| >COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK10992 iron-sulfur cluster repair di-iron protein; Provisional | Back alignment and domain information |
|---|
| >PHA02929 N1R/p28-like protein; Provisional | Back alignment and domain information |
|---|
| >cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) | Back alignment and domain information |
|---|
| >COG3945 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein | Back alignment and domain information |
|---|
| >PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A | Back alignment and domain information |
|---|
| >COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A | Back alignment and domain information |
|---|
| >PRK13276 cell wall biosynthesis protein ScdA; Provisional | Back alignment and domain information |
|---|
| >PRK13276 cell wall biosynthesis protein ScdA; Provisional | Back alignment and domain information |
|---|
| >smart00184 RING Ring finger | Back alignment and domain information |
|---|
| >KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional | Back alignment and domain information |
|---|
| >PF14634 zf-RING_5: zinc-RING finger domain | Back alignment and domain information |
|---|
| >COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >PHA02926 zinc finger-like protein; Provisional | Back alignment and domain information |
|---|
| >KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A | Back alignment and domain information |
|---|
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
| >PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A | Back alignment and domain information |
|---|
| >KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] | Back alignment and domain information |
|---|
| >COG2846 Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR00599 rad18 DNA repair protein rad18 | Back alignment and domain information |
|---|
| >KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG3945 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins | Back alignment and domain information |
|---|
| >KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A | Back alignment and domain information |
|---|
| >TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 | Back alignment and domain information |
|---|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0825 consensus PHD Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1940 consensus Zn-finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
| >KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B | Back alignment and domain information |
|---|
| >KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] | Back alignment and domain information |
|---|
| >KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C | Back alignment and domain information |
|---|
| >KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] | Back alignment and domain information |
|---|
| >PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B | Back alignment and domain information |
|---|
| >PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 | Back alignment and domain information |
|---|
| >KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length | Back alignment and domain information |
|---|
| >KOG3039 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A | Back alignment and domain information |
|---|
| >KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14447 Prok-RING_4: Prokaryotic RING finger family 4 | Back alignment and domain information |
|---|
| >PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function | Back alignment and domain information |
|---|
| >KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] | Back alignment and domain information |
|---|
| >PF04641 Rtf2: Rtf2 RING-finger | Back alignment and domain information |
|---|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5175 MOT2 Transcriptional repressor [Transcription] | Back alignment and domain information |
|---|
| >KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PHA02862 5L protein; Provisional | Back alignment and domain information |
|---|
| >COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] | Back alignment and domain information |
|---|
| >COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
| >KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1184 | ||||
| 2k2c_A | 137 | Solution Nmr Structure Of N-Terminal Domain Of Huma | 7e-25 | ||
| 2dkt_A | 143 | Solution Structure Of The Chy Zinc Finger Domain Of | 2e-24 | ||
| 2ecm_A | 55 | Solution Structure Of The Ring Domain Of The Ring F | 3e-05 | ||
| 2jrj_A | 52 | Solution Structure Of The Human Pirh2 Ring-H2 Domai | 9e-05 | ||
| 2ect_A | 78 | Solution Structure Of The Zinc Finger, C3hc4 Type ( | 6e-04 |
| >pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 | Back alignment and structure |
|
| >pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 | Back alignment and structure |
| >pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 | Back alignment and structure |
| >pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 | Back alignment and structure |
| >pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 6e-54
Identities = 62/144 (43%), Positives = 77/144 (53%), Gaps = 6/144 (4%)
Query: 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMR 1034
G S R+ + GCEHY R C L+A CC KL+TCR CHD DH +DR E+ C+
Sbjct: 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCIN 63
Query: 1035 CLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHC 1094
C K+Q C C +YYC IC FD ++ YHC C +CR+ G DFFHC
Sbjct: 64 CEKLQHAQQTCE--DC-STLFGEYYCSICHLFDKDKRQYHCESCGICRI--GPKEDFFHC 118
Query: 1095 MTCNCCLAKKLVD-HKCREKGLET 1117
+ CN CL L HKC E G +
Sbjct: 119 LKCNLCLTTNLRGKHKCIESGPSS 142
|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A Length = 160 | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} Length = 369 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} Length = 172 | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1184 | |||
| 2dkt_A | 143 | Ring finger and CHY zinc finger domain- containing | 100.0 | |
| 2p0n_A | 172 | Hypothetical protein NMB1532; structural genomics, | 99.47 | |
| 2p0n_A | 172 | Hypothetical protein NMB1532; structural genomics, | 99.45 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 99.23 | |
| 2ecm_A | 55 | Ring finger and CHY zinc finger domain- containing | 99.17 | |
| 1iym_A | 55 | EL5; ring-H2 finger, ubiquitin ligase, DNA binding | 99.14 | |
| 2ep4_A | 74 | Ring finger protein 24; zinc binding, ubiquitin, E | 99.13 | |
| 1x4j_A | 75 | Ring finger protein 38; structural genomics, NPPSF | 99.12 | |
| 2ecl_A | 81 | Ring-box protein 2; RNF7, ring domian, zinc-bindin | 99.11 | |
| 2kiz_A | 69 | E3 ubiquitin-protein ligase arkadia; ring-H2 finge | 99.09 | |
| 2l0b_A | 91 | E3 ubiquitin-protein ligase praja-1; zinc finger, | 99.07 | |
| 2ect_A | 78 | Ring finger protein 126; metal binding protein, st | 99.03 | |
| 1v87_A | 114 | Deltex protein 2; ring-H2 domain, zinc-binding dom | 99.02 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 98.99 | |
| 2ea6_A | 69 | Ring finger protein 4; RNF4, RES4-26, ring domain, | 98.93 | |
| 3ng2_A | 71 | RNF4, snurf, ring finger protein 4; ring domain, E | 98.93 | |
| 3dpl_R | 106 | Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST | 98.93 | |
| 2xeu_A | 64 | Ring finger protein 4; transcription, zinc-finger, | 98.91 | |
| 1chc_A | 68 | Equine herpes virus-1 ring domain; viral protein; | 98.9 | |
| 2ecn_A | 70 | Ring finger protein 141; RNF141, ring domain, zinc | 98.84 | |
| 2ct2_A | 88 | Tripartite motif protein 32; zinc-finger protein H | 98.83 | |
| 2djb_A | 72 | Polycomb group ring finger protein 6; PCGF6, ring | 98.79 | |
| 4a0k_B | 117 | E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi | 98.78 | |
| 2d8t_A | 71 | Dactylidin, ring finger protein 146; RNF146, ring | 98.78 | |
| 1g25_A | 65 | CDK-activating kinase assembly factor MAT1; ring f | 98.73 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 98.69 | |
| 2ecy_A | 66 | TNF receptor-associated factor 3; metal binding pr | 98.68 | |
| 2csy_A | 81 | Zinc finger protein 183-like 1; ring finger protei | 98.67 | |
| 2d8s_A | 80 | Cellular modulator of immune recognition; C-MIR, m | 98.66 | |
| 2yur_A | 74 | Retinoblastoma-binding protein 6; P53-associated c | 98.66 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 98.64 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.63 | |
| 2ysl_A | 73 | Tripartite motif-containing protein 31; ring-type | 98.62 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 98.58 | |
| 3lrq_A | 100 | E3 ubiquitin-protein ligase TRIM37; structural gen | 98.55 | |
| 2ecv_A | 85 | Tripartite motif-containing protein 5; metal bindi | 98.52 | |
| 4ap4_A | 133 | E3 ubiquitin ligase RNF4; ligase-signalling protei | 98.52 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 98.51 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 98.51 | |
| 2egp_A | 79 | Tripartite motif-containing protein 34; ZF-C3HC4 d | 98.51 | |
| 2ecw_A | 85 | Tripartite motif-containing protein 30; metal bind | 98.5 | |
| 2ecj_A | 58 | Tripartite motif-containing protein 39; TRIM39, ri | 98.5 | |
| 2ysj_A | 63 | Tripartite motif-containing protein 31; ring-type | 98.49 | |
| 2ckl_B | 165 | Ubiquitin ligase protein RING2; BMI1, RING1B, poly | 98.48 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 98.44 | |
| 1jm7_A | 112 | BRCA1, breast cancer type 1 susceptibility protein | 98.4 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 98.36 | |
| 3l11_A | 115 | E3 ubiquitin-protein ligase RNF168; E3 ligase, rin | 98.36 | |
| 2vje_A | 64 | E3 ubiquitin-protein ligase MDM2; proto-oncogene, | 98.32 | |
| 2ct0_A | 74 | Non-SMC element 1 homolog; ring domain, structural | 98.31 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 98.27 | |
| 3hct_A | 118 | TNF receptor-associated factor 6; cross-brace, bet | 98.27 | |
| 1rmd_A | 116 | RAG1; V(D)J recombination, antibody, MAD, ring fin | 98.22 | |
| 2vje_B | 63 | MDM4 protein; proto-oncogene, phosphorylation, alt | 98.21 | |
| 4ic3_A | 74 | E3 ubiquitin-protein ligase XIAP; ring domain, zin | 98.17 | |
| 2y1n_A | 389 | E3 ubiquitin-protein ligase; ligase-transferase co | 98.14 | |
| 1bor_A | 56 | Transcription factor PML; proto-oncogene, nuclear | 98.12 | |
| 1jm7_B | 117 | BARD1, BRCA1-associated ring domain protein 1; rin | 98.08 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 98.08 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 98.04 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 98.0 | |
| 3k1l_B | 381 | Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A | 97.98 | |
| 2ecg_A | 75 | Baculoviral IAP repeat-containing protein 4; BIRC4 | 97.97 | |
| 3knv_A | 141 | TNF receptor-associated factor 2; cross-brace, alt | 97.96 | |
| 2ea5_A | 68 | Cell growth regulator with ring finger domain prot | 97.94 | |
| 2yho_A | 79 | E3 ubiquitin-protein ligase mylip; ligase, E2 liga | 97.9 | |
| 1vyx_A | 60 | ORF K3, K3RING; zinc-binding protein, ring domain, | 97.81 | |
| 3hcs_A | 170 | TNF receptor-associated factor 6; cross-brace, bet | 97.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.71 | |
| 1wim_A | 94 | KIAA0161 protein; ring finger domain, UBCM4-intera | 97.65 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 97.55 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 97.42 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 97.41 | |
| 3t6p_A | 345 | Baculoviral IAP repeat-containing protein 2; ring, | 97.4 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 97.16 | |
| 3vk6_A | 101 | E3 ubiquitin-protein ligase hakai; HYB, phosphotyr | 96.58 | |
| 3u9j_A | 160 | F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i | 96.47 | |
| 3nw0_A | 238 | Non-structural maintenance of chromosomes element | 95.61 | |
| 3u9j_A | 160 | F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, i | 94.32 | |
| 2k2d_A | 79 | Ring finger and CHY zinc finger domain- containing | 87.41 | |
| 2ko5_A | 99 | Ring finger protein Z; lassa fever virus-Z, negati | 85.27 |
| >2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=379.48 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.0
Q ss_pred CCCCCccccccccCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcc
Q 001028 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1184)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~ 1054 (1184)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC--C-Ccc
Confidence 5578999999999999999999999999999999999999999999999999999999999999999999988 5 999
Q ss_pred cceEecccccCccCCCCcccCCCCCccccCCCCCccccccCCCcccccccc-ccccccccCccC
Q 001028 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1184)
Q Consensus 1055 ~a~Y~C~iC~l~dd~k~~yHC~~CgiCRvG~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~ 1117 (1184)
|++|||+||||||++|+||||++|||||||+ |+|||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999996 699999999999999999 899999998753
|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis} | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A | Back alignment and structure |
|---|
| >1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A | Back alignment and structure |
|---|
| >2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} | Back alignment and structure |
|---|
| >2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
| >2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} | Back alignment and structure |
|---|
| >2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B | Back alignment and structure |
|---|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
| >1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
| >2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A | Back alignment and structure |
|---|
| >2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A | Back alignment and structure |
|---|
| >1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 | Back alignment and structure |
|---|
| >2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* | Back alignment and structure |
|---|
| >4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A | Back alignment and structure |
|---|
| >2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* | Back alignment and structure |
|---|
| >1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
| >3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A | Back alignment and structure |
|---|
| >1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 | Back alignment and structure |
|---|
| >3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
| >1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 | Back alignment and structure |
|---|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
| >3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B | Back alignment and structure |
|---|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
| >3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A | Back alignment and structure |
|---|
| >3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
| >3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A | Back alignment and structure |
|---|
| >2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1184 | ||||
| d2dkta2 | 56 | g.93.1.1 (A:82-137) RING finger and CHY zinc finge | 6e-24 | |
| d2dkta1 | 74 | g.89.1.1 (A:8-81) RING finger and CHY zinc finger | 4e-19 | |
| d1iyma_ | 55 | g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati | 1e-05 | |
| d1chca_ | 68 | g.44.1.1 (A:) Immediate early protein, IEEHV {Equi | 5e-05 | |
| d3dplr1 | 88 | g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S | 6e-04 | |
| d1ur6b_ | 52 | g.44.1.1 (B:) Not-4 N-terminal RING finger domain | 8e-04 | |
| d1g25a_ | 65 | g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi | 0.002 | |
| d1bora_ | 56 | g.44.1.1 (A:) Acute promyelocytic leukaemia proto- | 0.002 | |
| d1fbva4 | 79 | g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta | 0.002 | |
| d2baya1 | 56 | g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { | 0.002 |
| >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 | Back information, alignment and structure |
|---|
class: Small proteins fold: Zinc hairpin stack superfamily: Zinc hairpin stack family: Zinc hairpin stack domain: RING finger and CHY zinc finger domain-containing protein 1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.6 bits (233), Expect = 6e-24
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 1057 KYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVD-HKCRE 1112
+YYC IC FD ++ YHC C +CR+G DFFHC+ CN CL L HKC E
Sbjct: 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKE--DFFHCLKCNLCLTTNLRGKHKCIE 56
|
| >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74 | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 | Back information, alignment and structure |
|---|
| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 | Back information, alignment and structure |
|---|
| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 | Back information, alignment and structure |
|---|
| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 | Back information, alignment and structure |
|---|
| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 | Back information, alignment and structure |
|---|
| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 | Back information, alignment and structure |
|---|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1184 | |||
| d2dkta2 | 56 | RING finger and CHY zinc finger domain-containing | 99.88 | |
| d2dkta1 | 74 | RING finger and CHY zinc finger domain-containing | 99.53 | |
| d1iyma_ | 55 | EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 | 99.29 | |
| d1ur6b_ | 52 | Not-4 N-terminal RING finger domain {Human (Homo s | 99.12 | |
| d1chca_ | 68 | Immediate early protein, IEEHV {Equine herpesvirus | 99.09 | |
| d3dplr1 | 88 | RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase | 99.0 | |
| d1v87a_ | 114 | Deltex protein 2 RING-H2 domain {Mouse (Mus muscul | 99.0 | |
| d1g25a_ | 65 | TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 | 98.97 | |
| d1fbva4 | 79 | CBL {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 98.53 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.49 | |
| d1bora_ | 56 | Acute promyelocytic leukaemia proto-oncoprotein PM | 98.47 | |
| d1vyxa_ | 60 | IE1B protein (ORF K3), N-terminal domain {Kaposi's | 98.46 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 98.43 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 98.37 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 98.04 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 97.96 | |
| d1wima_ | 94 | UbcM4-interacting protein 4 (KIAA0161) {Human (Hom | 97.68 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 97.34 | |
| d1vd4a_ | 62 | Transcription initiation factor TFIIE-alpha {Human | 83.2 |
| >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: Zinc hairpin stack superfamily: Zinc hairpin stack family: Zinc hairpin stack domain: RING finger and CHY zinc finger domain-containing protein 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.2e-24 Score=180.86 Aligned_cols=55 Identities=51% Similarity=1.290 Sum_probs=52.5
Q ss_pred ceEecccccCccCCCCcccCCCCCccccCCCCCccccccCCCcccccccc-ccccccc
Q 001028 1056 AKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCRE 1112 (1184)
Q Consensus 1056 a~Y~C~iC~l~dd~k~~yHC~~CgiCRvG~gl~~~~fHC~~C~~C~s~~l-~~H~C~e 1112 (1184)
|+|||+|||||||||++|||++|||||||+ +++||||++||+|+++++ ++|+|+|
T Consensus 1 G~YfC~iC~l~dddk~~yHC~~CgiCRvG~--~~~ffHC~~C~~C~~~~l~~~H~CiE 56 (56)
T d2dkta2 1 GEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIE 56 (56)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred CceECCcCCcccCCCCcccCCCCCceeecC--CccccccCccccccCcccCCCccccC
Confidence 689999999999999999999999999997 579999999999999998 9999987
|
| >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} | Back information, alignment and structure |
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| >d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} | Back information, alignment and structure |
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| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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