Citrus Sinensis ID: 001055
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1171 | 2.2.26 [Sep-21-2011] | |||||||
| Q42093 | 1623 | ABC transporter C family | yes | no | 0.996 | 0.719 | 0.816 | 0.0 | |
| Q9C8G9 | 1622 | ABC transporter C family | no | no | 0.995 | 0.718 | 0.790 | 0.0 | |
| Q9C8H0 | 1495 | ABC transporter C family | no | no | 0.881 | 0.690 | 0.748 | 0.0 | |
| Q9C8H1 | 1495 | ABC transporter C family | no | no | 0.881 | 0.690 | 0.733 | 0.0 | |
| Q28689 | 1564 | Canalicular multispecific | yes | no | 0.859 | 0.643 | 0.416 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | yes | no | 0.870 | 0.661 | 0.411 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | yes | no | 0.862 | 0.653 | 0.409 | 0.0 | |
| Q8VI47 | 1543 | Canalicular multispecific | yes | no | 0.870 | 0.660 | 0.415 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.864 | 0.663 | 0.414 | 0.0 | |
| O88563 | 1522 | Canalicular multispecific | no | no | 0.858 | 0.660 | 0.406 | 0.0 |
| >sp|Q42093|AB2C_ARATH ABC transporter C family member 2 OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1939 bits (5024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1176 (81%), Positives = 1064/1176 (90%), Gaps = 9/1176 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 452 MFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 511
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLF
Sbjct: 512 LSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 571
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPT
Sbjct: 572 MLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPT 631
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFN
Sbjct: 632 LSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFN 691
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 692 ATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 751
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LV
Sbjct: 752 RAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLV 811
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L
Sbjct: 812 HEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGL 870
Query: 421 PKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFL 475
+ SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY L
Sbjct: 871 QMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVL 930
Query: 476 TETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535
TE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK
Sbjct: 931 TEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAK 990
Query: 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 595
+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST V
Sbjct: 991 KLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVV 1050
Query: 596 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIR 655
LIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIR
Sbjct: 1051 LIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIR 1110
Query: 656 AYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAE 715
AYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AE
Sbjct: 1111 AYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAE 1170
Query: 716 NQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775
NQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+N
Sbjct: 1171 NQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENN 1230
Query: 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835
RPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LF
Sbjct: 1231 RPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALF 1290
Query: 836 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895
RIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE
Sbjct: 1291 RIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWE 1350
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD
Sbjct: 1351 SLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1410
Query: 956 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015
VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSS
Sbjct: 1411 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSS 1470
Query: 1016 FSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSL 1075
FSKMVQSTGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA SL
Sbjct: 1471 FSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASL 1527
Query: 1076 TSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALY 1135
TSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LY
Sbjct: 1528 TSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLY 1587
Query: 1136 RMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
RM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1588 RMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Pump for glutathione S-conjugates. Mediates the transport of S-conjugates such as GSH, S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS), glucuronides such as 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG), and of the chlorophyll catabolite such as B.napus nonfluorescent chlorophyll catabolite (Bn-NCC-1). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9C8G9|AB1C_ARATH ABC transporter C family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/1176 (79%), Positives = 1058/1176 (89%), Gaps = 10/1176 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT IIS+ QKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 452 MFPIQTVIISKTQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 511
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A N FILNSIPVLVTVVSFG+F+LLGGDLTPARAFTSLSLF+VLRFPLF
Sbjct: 512 LSWFRKAQLLSAFNMFILNSIPVLVTVVSFGVFSLLGGDLTPARAFTSLSLFSVLRFPLF 571
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQ+VNANVSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+RPT
Sbjct: 572 MLPNIITQMVNANVSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADRPT 631
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLDIP+GSLVA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWIFN
Sbjct: 632 LSNINLDIPLGSLVAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWIFN 691
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFG+ F+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 692 ATVRDNILFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 751
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV I DDPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+LV
Sbjct: 752 RAVYSNSDVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLV 811
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEG VKEEGT+E+L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N+L
Sbjct: 812 HEGTVKEEGTYEELCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNANNL 870
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLR 480
K+ +T+ +KEG SVL+K+EERETGVVS+KVL RY++ALGG WVV++L++CY LT+ R
Sbjct: 871 QKDGIETKNSKEGNSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFR 930
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
VSSSTWLS WTD + KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++HDA
Sbjct: 931 VSSSTWLSEWTDSGTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDA 990
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML SILRAPMVFF TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIGIV
Sbjct: 991 MLGSILRAPMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIV 1050
Query: 601 STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMPLL++FY AYLYYQ+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYKAY
Sbjct: 1051 STLSLWAIMPLLVVFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAY 1110
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA+ING+SMD NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+A+
Sbjct: 1111 DRMAEINGRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAY 1170
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSYAL+ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPPPG
Sbjct: 1171 ASTMGLLLSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPG 1230
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPSSGSIKFEDVVLRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIVEL
Sbjct: 1231 WPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVEL 1290
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E+GRILID DI +FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LERA
Sbjct: 1291 EKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERA 1350
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
HLKD IRRN LGLDA+V+EAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTD
Sbjct: 1351 HLKDTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDV 1410
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQKTIREEFKSCTMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSKMV
Sbjct: 1411 LIQKTIREEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMV 1470
Query: 1021 QSTGAANAQYLRSLVLGGEAENK-LREEN----KQIDGQRRWLASSRWAAAAQYALAVSL 1075
QSTG ANA+YLRS+ L ENK RE N + ++GQR+W ASSRWAAAAQ+ALAVSL
Sbjct: 1471 QSTGTANAEYLRSITL----ENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSL 1526
Query: 1076 TSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALY 1135
TSSHNDLQ LE+ED N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY
Sbjct: 1527 TSSHNDLQSLEIEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLY 1586
Query: 1136 RMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
+M+EGL+VMSRLARNR+ DY+LE +S DWD+VEM
Sbjct: 1587 KMVEGLAVMSRLARNRMQHPDYNLEGKSFDWDNVEM 1622
|
Pump for glutathione S-conjugates. Mediates the transport of S-(2,4-dinitrophenyl)-glutathione (DNP-GS), GSSG, cyanidin 3-glucoside-GS (C3G-GS) and metolachlor-GS (MOC-GS). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H0|AB12C_ARATH ABC transporter C family member 12 OS=Arabidopsis thaliana GN=ABCC12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1555 bits (4026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1036 (74%), Positives = 892/1036 (86%), Gaps = 4/1036 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P+QT IIS+M+KLTKEGLQ TDKR+G+ NEIL++MD VKCYAWE SF+S++Q +RN+E
Sbjct: 453 LIPLQTLIISKMRKLTKEGLQWTDKRVGITNEILSSMDTVKCYAWEKSFESRIQGIRNEE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A NSFILNSIPV+VTVVSFG+F LLGGDLTPARAFTSLSLFAVLRFPL
Sbjct: 513 LSWFRKAQLLSAFNSFILNSIPVVVTVVSFGVFVLLGGDLTPARAFTSLSLFAVLRFPLN 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+++QVVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PT
Sbjct: 573 MLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGTPAISIKNGYFSWDSKTTKPT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L +INL+IPVG+LVAIVGGTGEGKTSLISAMLGEL S VIRG+VAYVPQVSWIFN
Sbjct: 633 LSDINLEIPVGTLVAIVGGTGEGKTSLISAMLGELSHAETTSVVIRGSVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVR+NILFGS FE RY +AID T+LQHDLDLLPG D+TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATVRENILFGSDFESERYWRAIDATALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +D+IILV
Sbjct: 753 RAVYSNSDVYIFDDPLSALDAHVAHQVFDSCMKDELRGKTRVLVTNQLHFLPLMDKIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
EGM+KEEGTF +LS +G LF+KLMENAGKM+ E + E + + + +L
Sbjct: 813 SEGMIKEEGTFVELSKSGILFKKLMENAGKMDATQEVNTNDENILKLGPTVTVDVSERNL 872
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLR 480
T++ K +SVLIKQEERETG++S+ VL RYK+A+GGLWVV+ILL CY TE LR
Sbjct: 873 ----GSTKQGKRRRSVLIKQEERETGIISWNVLMRYKEAVGGLWVVMILLACYLATEVLR 928
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
VSSSTWLS WTDQS+ K + P FY +Y+LL FGQV VT NS+WLI SSL+AA+RLHDA
Sbjct: 929 VSSSTWLSIWTDQSTSKNYSPGFYIVVYALLGFGQVAVTFTNSFWLITSSLHAARRLHDA 988
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML SILRAPM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG V
Sbjct: 989 MLSSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTV 1048
Query: 601 STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYKAY
Sbjct: 1049 STISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA INGKSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV+QNG+ NQ F
Sbjct: 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLQNGNTNNQAGF 1168
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSY LNITSLL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP G
Sbjct: 1169 ASTMGLLLSYTLNITSLLSGVLRQASRAENSLNSVERVGNYIDLPSEATDIIENNRPVCG 1228
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPS GSIKFEDV LRYRP LPPVLHGL+F + PS+KVG+VGRTGAGKSSMLN LFRIVE+
Sbjct: 1229 WPSGGSIKFEDVHLRYRPGLPPVLHGLTFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEV 1288
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E+GRI+ID D+AKFGL D+R++L IIPQSPVLFSGTVRFN+DPFSEH+DA LWEAL RA
Sbjct: 1289 EKGRIMIDDCDVAKFGLTDVRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAGLWEALHRA 1348
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
H+KD I RN GLDA+V E GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRTD+
Sbjct: 1349 HIKDVISRNPFGLDAEVCEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQ+TIREEFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +MV
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 1021 QSTGAANAQYLRSLVL 1036
STG ANAQYL +LV
Sbjct: 1469 HSTGPANAQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9C8H1|AB11C_ARATH ABC transporter C family member 11 OS=Arabidopsis thaliana GN=ABCC11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1546 bits (4003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 760/1036 (73%), Positives = 882/1036 (85%), Gaps = 4/1036 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P QT I+ +M+KLTKEGLQ TDKR+G++ EILA+MD VKCYAWE SF+S++Q +RN+E
Sbjct: 453 LIPFQTLIVRKMRKLTKEGLQWTDKRVGIIYEILASMDIVKCYAWEKSFESRIQGIRNEE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A NSFILNS PV+VT+VSFG++ LLGGDLTPARAFTSLSLFAVLR PL
Sbjct: 513 LSWFRKAQLLSAFNSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSPLS 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
LPN+I+Q VNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PT
Sbjct: 573 TLPNLISQAVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L +INL+IPVGSLVAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWIFN
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
AT+R+NILFGS FE RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATLRENILFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSD++IFDDP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV
Sbjct: 753 RAVYSNSDIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
EGM+KEEG F +LS +G LF+KLMENAGKM+ ++ T D SK +
Sbjct: 813 SEGMIKEEGNFAELSKSGTLFKKLMENAGKMDA----TQEVNTNDENISKLGPTVTIDVS 868
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLR 480
+ ++ K G+S+L+KQEERETG++S+ V+ RY A+GGLWVV+ILL+CY TE LR
Sbjct: 869 ERSLGSIQQGKWGRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLR 928
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
V SSTWLS WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDA
Sbjct: 929 VLSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDA 988
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML+SILRAPM+FF TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIGIV
Sbjct: 989 MLNSILRAPMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIV 1048
Query: 601 STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMPLL+LFYA Y+YYQST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYKAY
Sbjct: 1049 STISLWAIMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAY 1108
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA INGKSMD NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ F
Sbjct: 1109 DRMAKINGKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVF 1168
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP G
Sbjct: 1169 ASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSG 1228
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPS GSI+FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIVEL
Sbjct: 1229 WPSRGSIQFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVEL 1288
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E+GRILID +D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERA
Sbjct: 1289 EKGRILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
H+KD I RN GLDA+VSE GENFSVGQRQLLSL+RALLRRSKIL LDEATA+VDVRTD+
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDS 1408
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQ+TIREEFKSCTMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F KMV
Sbjct: 1409 LIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMV 1468
Query: 1021 QSTGAANAQYLRSLVL 1036
STG N QYL +LV
Sbjct: 1469 HSTGPENGQYLSNLVF 1484
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 832 bits (2149), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/1089 (41%), Positives = 669/1089 (61%), Gaps = 82/1089 (7%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ PV + ++ + + + ++ DKR+ +MNEIL+ M +K +AWE SF+ +V N+R E
Sbjct: 471 LIPVNGILATKNRNIQFKNMKYKDKRLRIMNEILSGMKILKYFAWEPSFKDQVHNLRKKE 530
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 118
L R ++ + F+L PVLV+V +F ++ L+ + L +AFTS++LF +LRFP
Sbjct: 531 LKNLRTFAYMQSVVMFLLYLTPVLVSVTTFSVYVLVDSNNILDAEKAFTSITLFNILRFP 590
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEE---KILLPNPPLTSGLPAISIRNGYFSWDSK 175
+ MLPN+I+ ++ A+VS+ R+E++L ++ + +P A+ F+WD
Sbjct: 591 MSMLPNVISAMLQASVSVDRLEKYLSGDDLDTSAIQRDPNFDK---AVQFSEASFTWDRN 647
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 235
E PT+ N+NLDI G LVA+VG G GK+SL+SAMLGE+ V I+GT AYVPQ
Sbjct: 648 LE-PTIRNVNLDIMPGQLVAVVGTVGSGKSSLMSAMLGEMENV-HGHITIKGTTAYVPQQ 705
Query: 236 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295
SWI N T++DNILFG+ F+ RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQ
Sbjct: 706 SWIQNGTIKDNILFGAEFDERRYQRVLEACALLPDLEILPGGDLAEIGEKGINLSGGQKQ 765
Query: 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQ 353
R+S+ARA Y NSD++I DDPLSA+DAHVG+ +F++ + G L+GKTR+LVT+ LHFL Q
Sbjct: 766 RISLARASYQNSDIYILDDPLSAVDAHVGKHIFNKVLGPNGLLNGKTRLLVTHSLHFLPQ 825
Query: 354 VDRIILVHEGMVKEEGTFEDL-------SNNGELFQKLMENAGK---------------- 390
VD I++V G + E+G++ L + N ++F K ++ G+
Sbjct: 826 VDEIVVVENGTILEKGSYSSLLAKKGVFAKNLKMFVKHTDSEGEVTVNDGSEEDDDDDSG 885
Query: 391 ----MEEYVEE-------KEDG-----------ETVDNKTSKPAANGVDNDLPKEASDTR 428
+EE+ E+ +E+ K+ K + + PKE +
Sbjct: 886 LISSIEEFPEDSISLTLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVK 945
Query: 429 KTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLI-LLLCYFLTETLRVSSSTWL 487
K LIK+E ETG V F + +Y A+G W ++ ++ Y L + S+ WL
Sbjct: 946 GQK-----LIKKEFMETGKVKFSIYLKYLQAIG--WCSIVGIIFAYVLNSVAFIGSNLWL 998
Query: 488 SYWTDQSSLKTHGPLFYNT--------IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539
S WT S+ T+ Y I+ +L Q L L S+W +A+ LH
Sbjct: 999 SAWTSDSN--TYNGTNYPASQRDLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHK 1056
Query: 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 599
+L++ILRAPM FF+T P+GRI+NRFA D+ +D + + +M ++ST ++I +
Sbjct: 1057 QLLNNILRAPMSFFNTTPIGRIVNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICM 1116
Query: 600 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 659
+ + I+PL +++ A ++Y +T+R+++RLDS+TRSP+Y+ F E ++GL IRA++
Sbjct: 1117 ATPVFAVIIIPLAIIYVAVQVFYVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEH 1176
Query: 660 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 719
R N +D N + + +NRWLA RLE+VG L+++ +A V+ +
Sbjct: 1177 QQRFLKQNEIGIDTNQKCVSSWITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLS---- 1232
Query: 720 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779
+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +EAP V + RPP
Sbjct: 1233 -GDVVGFVLSNALNITQTLNWLVRMTSETETNIVAVERITEYIKVENEAPWVTD-KRPPA 1290
Query: 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
GWP G I+F + +RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E
Sbjct: 1291 GWPHKGEIQFSNYQVRYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILE 1350
Query: 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 899
G I IDG DIA GL DLR L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE
Sbjct: 1351 AAGGHITIDGIDIASIGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALEL 1410
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
AHLK + GL +VSEA +N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD
Sbjct: 1411 AHLKSFVAGLQHGLSREVSEAEDNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETD 1470
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
LIQ TIR EF CT++ IAHRL+TI+D D+I++LD+G ++EY +PEELL + G FS M
Sbjct: 1471 HLIQTTIRNEFSHCTVITIAHRLHTIMDSDKIMVLDNGNIVEYGSPEELLESAG-PFSLM 1529
Query: 1020 VQSTGAANA 1028
+ +G N
Sbjct: 1530 AKESGIENV 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/1081 (41%), Positives = 670/1081 (61%), Gaps = 62/1081 (5%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ PV + ++++ + + ++ DKR+ +MNEIL+ + +K +AWE SFQ +VQ +R E
Sbjct: 469 LIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEILSGIKILKYFAWEPSFQEQVQGIRKKE 528
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLL--GGDLTPARAFTSLSLFAVLRFP 118
L + L + FIL P+LV+VV+F ++ L+ L +AFTS++LF +LRFP
Sbjct: 529 LKNLLRFGQLQSLLIFILQITPILVSVVTFSVYVLVDSANVLNAEKAFTSITLFNILRFP 588
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 178
L MLP + + ++ A+VS+ R+E +L ++ +++ A+ F+WD E
Sbjct: 589 LSMLPMVTSSILQASVSVDRLERYLGGDDLDTSAIRRVSNFDKAVKFSEASFTWDPDLE- 647
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238
T+ ++NLDI G LVA+VG G GK+SL+SAMLGE+ V I+G+ AYVPQ SWI
Sbjct: 648 ATIQDVNLDIKPGQLVAVVGTVGSGKSSLVSAMLGEMENV-HGHITIQGSTAYVPQQSWI 706
Query: 239 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298
N T++DNILFGS + +Y++ + +L DL++LPGGD+ EIGE+G+N+SGGQKQRVS
Sbjct: 707 QNGTIKDNILFGSEYNEKKYQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVS 766
Query: 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDR 356
+ARA Y ++D++I DDPLSA+DAHVG+ +F++ + G L+GKTR+ VT+ +HFL QVD
Sbjct: 767 LARAAYQDADIYILDDPLSAVDAHVGKHIFNKVVGPNGLLAGKTRIFVTHGIHFLPQVDE 826
Query: 357 IILVHEGMVKEEGTFEDLSNNGELFQK----LMENAGKMEEYV-------EEKEDG---- 401
I+++ +G + E+G++ DL + +F + M+++G E E+ +DG
Sbjct: 827 IVVLGKGTILEKGSYRDLLDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPT 886
Query: 402 -ETVDNKTSKPA---------------------ANGVDNDLPKEASDTRKTKEGK---SV 436
E + + A + N L + + K KE +
Sbjct: 887 MEEIPEDAASLAMRRENSLRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEVEGQK 946
Query: 437 LIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS-- 494
LIK+E ETG V F + +Y A+ G W +L ++L Y L + S+ WLS WT S
Sbjct: 947 LIKKEFVETGKVKFSIYLKYLQAV-GWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDN 1005
Query: 495 -----SLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 549
+ +H + ++ L Q + L ++ W I + A+K LH +L +ILRAP
Sbjct: 1006 LNGTNNSSSHRDMRIG-VFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAP 1064
Query: 550 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIM 609
M FF T P GRI+NRF+ D+ +D + + +M + T V+I + + + I+
Sbjct: 1065 MRFFDTTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIII 1124
Query: 610 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 669
PL +L+ + ++Y +T+R+++RLDS+T+SP+Y+ F E + GL IRA++ R N K
Sbjct: 1125 PLSILYISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEK 1184
Query: 670 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLS 729
+D N + + +NRWLAIRLE+VG L+++ +A V+ + +G +LS
Sbjct: 1185 QIDINQKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLT-----GDVVGFVLS 1239
Query: 730 YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKF 789
ALNIT L ++R+ S AE ++ AVER+ YI + +EAP V + RPP WP G I+F
Sbjct: 1240 NALNITQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTD-KRPPADWPRHGEIQF 1298
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849
+ +RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1299 NNYQVRYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDG 1358
Query: 850 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909
D+A GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE AHL+ +
Sbjct: 1359 IDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGL 1418
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969
LGL ++V+E G+N S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR+E
Sbjct: 1419 QLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKE 1478
Query: 970 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 1029
F CT++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN G SF M + G N
Sbjct: 1479 FSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRG-SFYLMAKEAGIENVN 1537
Query: 1030 Y 1030
+
Sbjct: 1538 H 1538
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/1086 (40%), Positives = 664/1086 (61%), Gaps = 76/1086 (6%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P+ + ++ + + + ++ DKR+ +MNEIL+ + +K +AWE SF+ +VQN+R E
Sbjct: 473 VIPINAILSTKSKTIQVKNMKNKDKRLKIMNEILSGIKILKYFAWEPSFRDQVQNLRKKE 532
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 118
L L F+ PVLV+VV+F ++ L+ + L +AFTS++LF +LRFP
Sbjct: 533 LKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYVLVDSNNILDAQKAFTSITLFNILRFP 592
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL---PAISIRNGYFSWDSK 175
L MLP MI+ ++ A+VS +R+E++L ++ L + A+ F+W+
Sbjct: 593 LSMLPMMISSMLQASVSTERLEKYLGGDD---LDTSAIRHDCNFDKAMQFSEASFTWEHD 649
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 235
+E T+ ++NLDI G LVA++G G GK+SLISAMLGE+ V I+GT AYVPQ
Sbjct: 650 SE-ATVRDVNLDIMAGQLVAVIGPVGSGKSSLISAMLGEMENV-HGHITIKGTTAYVPQQ 707
Query: 236 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295
SWI N T++DNILFG+ F RY++ ++ +L DL++LPGGD+ EIGE+G+N+SGGQKQ
Sbjct: 708 SWIQNGTIKDNILFGTEFNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQ 767
Query: 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQ 353
R+S+ARA Y N D+++ DDPLSA+DAHVG+ +F++ + G L GKTR+LVT+ +HFL Q
Sbjct: 768 RISLARATYQNLDIYLLDDPLSAVDAHVGKHIFNKVLGPNGLLKGKTRLLVTHSMHFLPQ 827
Query: 354 VDRIILVHEGMVKEEGTFEDL-SNNGELFQKL---MENAGKMEEYV------EEKEDGET 403
VD I+++ G + E+G++ L + GE + L + + G EE EE +D
Sbjct: 828 VDEIVVLGNGTIVEKGSYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDDDYGL 887
Query: 404 VDNKTSKP----------------------AANG-----VDNDLPKEASDTRKTKE---- 432
+ + P +NG + N L ++ K E
Sbjct: 888 ISSVEEIPEDAASITMRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVK 947
Query: 433 GKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 492
G+ LIK+E ETG V F + Y A+G L+ + ++L + + + S+ WLS WT
Sbjct: 948 GQK-LIKKEFIETGKVKFSIYLEYLQAIG-LFSIFFIILAFVMNSVAFIGSNLWLSAWTS 1005
Query: 493 QSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 546
S + T P +Y L Q + +W ++A+ LH +L++IL
Sbjct: 1006 DSKIFNSTDYPASQRDMRVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNIL 1065
Query: 547 RAPMVFFHTNPLGRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVLIGIVST 602
RAPM FF T P GRI+NRFA D+ +D +++ ++ F+G ++ST V+I + +
Sbjct: 1066 RAPMRFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWITCFLG----IISTLVMICMATP 1121
Query: 603 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 662
+ ++PL +++ + ++Y ST+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R
Sbjct: 1122 VFTIIVIPLGIIYVSVQMFYVSTSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQR 1181
Query: 663 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 722
N +D N + + +NRWLAIRLE+VG L ++ +A V+ +
Sbjct: 1182 FLKHNEVRIDTNQKCVFSWITSNRWLAIRLELVGNLTVFFSALMMVIYRDTLS-----GD 1236
Query: 723 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 782
T+G +LS ALNIT L ++R+ S E ++ AVER+ Y ++ +EAP V + RPPP WP
Sbjct: 1237 TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERITEYTKVENEAPWVTD-KRPPPDWP 1295
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
S G I+F + +RYRPEL VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E
Sbjct: 1296 SKGKIQFNNYQVRYRPELDLVLRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAG 1355
Query: 843 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 902
G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE AHL
Sbjct: 1356 GQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHL 1415
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
K + LGL +V+EAG N S+GQRQLL L RALLR+SKILVLDEATAAVD+ TD LI
Sbjct: 1416 KSFVASLQLGLSHEVTEAGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLI 1475
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
Q TI+ EF CT++ IAHRL+TI+D D++++LD+G+++E +PEELL G F M +
Sbjct: 1476 QTTIQNEFAHCTVITIAHRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPG-PFYFMAKE 1534
Query: 1023 TGAANA 1028
G N
Sbjct: 1535 AGIENV 1540
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q8VI47|MRP2_MOUSE Canalicular multispecific organic anion transporter 1 OS=Mus musculus GN=Abcc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1081 (41%), Positives = 678/1081 (62%), Gaps = 62/1081 (5%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ PV + ++++K+ + ++ DKR+ +MNEIL+ + +K +AWE SF+ +V ++R E
Sbjct: 471 LVPVNGVLATKIRKIQVQNMKNKDKRLKIMNEILSGIKILKYFAWEPSFKEQVNSIRKKE 530
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 118
L + L FIL+ P LV+V++F ++ L+ L +AFTS++LF +LRFP
Sbjct: 531 LRNLLRFSQLQTILIFILHLTPTLVSVITFSVYVLVDSQNVLNAEKAFTSITLFNILRFP 590
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAER 178
L MLP +I+ V+ A+VS+ R+E++L +++ L + A+ F+WD E
Sbjct: 591 LAMLPMVISSVIQASVSVDRLEQYLGSDDLDLSAIRHVCHFDKAVQFSEASFTWDRDLE- 649
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238
T+ ++NLDI G LVA+VG G GK+SLISAMLGE+ V I+G++AYVPQ +WI
Sbjct: 650 ATIQDVNLDIKPGQLVAVVGTVGSGKSSLISAMLGEMENV-HGHITIKGSIAYVPQQAWI 708
Query: 239 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298
N T++DNILFGS ++ +Y++ I+ +L DL++LPGGD+ EIGE+G+N+SGGQK RVS
Sbjct: 709 QNGTIKDNILFGSEYDEKKYQRVIEACALLPDLEMLPGGDMAEIGEKGINLSGGQKHRVS 768
Query: 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDR 356
+ARA Y ++D++I DDPLSA+D HVG+ +F++ + G LSGKTR+LVT+ +HFL QVD
Sbjct: 769 LARATYQDADIYILDDPLSAVDTHVGKHIFNKVVGPNGLLSGKTRILVTHGIHFLPQVDE 828
Query: 357 IILVHEGMVKEEGTFEDLSNNGELFQK----LMENAGKMEEYV----EEKEDGE-----T 403
I+++ +G + E+G++ DL + +F K M+++G E E+EDG+ T
Sbjct: 829 IVVLGKGTILEKGSYSDLMDKKGVFAKNWKTFMKHSGPEGEATVDNDSEEEDGDCGLIPT 888
Query: 404 VDNKTSKPAA------------------------NGVDNDLPKEASDTRKTKE----GKS 435
V+ A+ + + L ++ + KE G+
Sbjct: 889 VEEIPDDAASLTMRRENSLRRTLSRSSRSGSRRGKSLKSSLKIKSVNALNKKEEVVKGQK 948
Query: 436 VLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSS 495
LIK+E ETG V F + +Y A+G W +L +++ Y L + ++ WLS WT S
Sbjct: 949 -LIKKEFVETGKVKFSIYLKYLQAVG-WWSLLFIVIFYVLNYVAFIGTNLWLSAWTSDSE 1006
Query: 496 LKT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 549
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAP
Sbjct: 1007 KQNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAP 1066
Query: 550 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIM 609
M FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+
Sbjct: 1067 MSFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIII 1126
Query: 610 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGK 669
PL +L+ + ++Y +T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1127 PLSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEK 1186
Query: 670 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLS 729
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1187 QIDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLT-----GDTVGFVLS 1241
Query: 730 YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKF 789
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1242 NALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTD-KKPPADWPKKGEIQF 1300
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1301 NNYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDG 1360
Query: 850 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1361 IDIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGL 1420
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969
LGL +V+E G+N S+GQRQLL L RA+LR+SKILVLDEATAAVD+ TD+LIQ TIR E
Sbjct: 1421 QLGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNE 1480
Query: 970 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQ 1029
F CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G +
Sbjct: 1481 FSQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMG-PFYLMAKEAGIESVN 1539
Query: 1030 Y 1030
+
Sbjct: 1540 H 1540
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Mus musculus (taxid: 10090) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1065 (41%), Positives = 650/1065 (61%), Gaps = 53/1065 (4%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P+ + + + ++ D RI LMNEIL + +K YAWE +F+ KV +R E
Sbjct: 475 LVPINAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKE 534
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 118
L +K+ +LAA +F P LV + +F ++ + + L +AF SL+LF +LRFP
Sbjct: 535 LKVLKKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFP 594
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLPAISIRNGYFSWDS 174
L +LP +I+ +V A+VSLKR+ FL EE L P+ P+T+ +I ++N FSW S
Sbjct: 595 LNILPMVISSIVEASVSLKRLRVFLSHEE--LDPDSIIRGPITNAEGSIVVKNATFSW-S 651
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 234
K + P+L +IN +P GSL+A+VG G GK+SL+SA+LGE+ + V++G++AYVPQ
Sbjct: 652 KTDPPSLNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDK-KEGYVVVKGSIAYVPQ 710
Query: 235 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294
+WI NAT+ DNI+FG +RY++ I+ +L DL++LP GD TEIGE+GVN+SGGQK
Sbjct: 711 QAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGVNLSGGQK 770
Query: 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFLS 352
QRVS+ARAVY N+D ++FDDPLSA+DAHVG+ +F++ I +G L KTRVLVT+ +++L
Sbjct: 771 QRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVIGPKGILKNKTRVLVTHAVNYLP 830
Query: 353 QVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPA 412
Q+D I+++ +G + E G++++L F + + E+ +E D + K KP
Sbjct: 831 QMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMES-SDASSPSGKEGKPV 889
Query: 413 ANGV-DNDLPKEA-------SDTRKTKEGKS-------------------VLIKQEERET 445
NGV ND + S T + GKS L + + +T
Sbjct: 890 ENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKNSWKLTEADTAKT 949
Query: 446 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYN 505
G V V Y A+G L++ + + + ++S+ WLS WTD + +G Y
Sbjct: 950 GRVKATVYWEYMKAIG-LYISFLSVFLFMCNHIASLASNYWLSLWTDDPVV--NGTQQYT 1006
Query: 506 TI----YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561
+ Y L Q + S + I ++A++ LH +LH++LR+PM FF P G +
Sbjct: 1007 NVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPMSFFERTPSGNL 1066
Query: 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621
++RF+K++ ID + + MFMG ++ ++I + + ++ I PL L++ +
Sbjct: 1067 VSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPPLGLVYLLVQRF 1126
Query: 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 681
Y +T+R++KRL+S++RSPVY+ F E L G+S IRA++ R N +D+N + +
Sbjct: 1127 YVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMKVDENQKAYYPS 1186
Query: 682 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 741
+ ANRWLA+RLE VG ++ A FAV+ A N+ + +GL +SY+L IT+ L +
Sbjct: 1187 IVANRWLAVRLEFVGNCIVLFAALFAVI----ARNKLS-PGLIGLSVSYSLQITAYLNWL 1241
Query: 742 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801
+R+ S E ++ AVERV Y E+ EA IE P WP G ++F LRYR +L
Sbjct: 1242 VRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEFRGFGLRYREDLD 1301
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
VL ++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL DLR
Sbjct: 1302 LVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDGINIAKIGLHDLR 1361
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+ IIPQ P+LFSG++R NLDPF +HSD D+W +LE AHLK+ + L+ + SE G
Sbjct: 1362 FKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSLPDKLNHECSEGG 1421
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 981
EN SVGQRQL+ L+RALLR+SKILVLDEATAAVD+ TD LIQ TI+ +F+ CT+L IAHR
Sbjct: 1422 ENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQFEECTVLTIAHR 1481
Query: 982 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 1026
LNTI+D R+L+LD G V+E D+P+ LL +G +S M + +G A
Sbjct: 1482 LNTIMDYTRVLVLDRGEVVECDSPDNLLQAKGLFYS-MAKDSGLA 1525
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
| >sp|O88563|MRP3_RAT Canalicular multispecific organic anion transporter 2 OS=Rattus norvegicus GN=Abcc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1084 (40%), Positives = 649/1084 (59%), Gaps = 79/1084 (7%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P+ + +M+ + ++ D RI LM+EIL + +K YAWE +F +V+ +R E
Sbjct: 460 LIPLNGAVSMKMKTYQVQQMKFKDSRIKLMSEILNGIKVLKLYAWEPTFLEQVEGIRQGE 519
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 118
L RK +L A ++FI P +VT+++ G++ + + L +AF SLSLF +L+ P
Sbjct: 520 LQLLRKGAYLQAISTFIWVCTPFMVTLITLGVYVCVDKNNVLDAEKAFVSLSLFNILKIP 579
Query: 119 LFMLPNMITQVVNANVSLKRMEEFL--------LAEEKILLPNPPLTSGLPAISIRNGYF 170
L +LP +I+ + +VSLKR+++FL E K + P AI+I NG F
Sbjct: 580 LNLLPQLISGMTQTSVSLKRIQDFLNQDELDPQCVERKTISPGR-------AITIHNGTF 632
Query: 171 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA 230
SW SK PTL +IN+ IP G+LVA+VG G GK+SL+SA+LGE+ + A +V +G+VA
Sbjct: 633 SW-SKDLPPTLHSINIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGAVSV-KGSVA 690
Query: 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 290
YVPQ +WI N T+++N+LFG P RY++A++ +L DLD+LPGGD TEIGE+G+N+S
Sbjct: 691 YVPQQAWIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLS 750
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQL 348
GGQ+QRVS+ARAVYS++++F+ DDPLSA+D+HV + +FD+ I G L+GKTRVLVT+ +
Sbjct: 751 GGQRQRVSLARAVYSDANIFLLDDPLSAVDSHVAKHIFDQVIGPEGVLAGKTRVLVTHGI 810
Query: 349 HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG------- 401
FL Q D II++ +G + E G + +L + F + N E +E +G
Sbjct: 811 SFLPQTDFIIVLADGQITEMGHYSELLQHDGSFANFLRNYAPDEN--QEANEGVLQHANE 868
Query: 402 ------ETVDNKT----SKPAANGVDNDLPKEASDTRKTKEGKS---------------- 435
+T+ T ++PA V +E S EG++
Sbjct: 869 EVLLLEDTLSTHTDLTDTEPAIYEVRKQFMREMSSLSSEGEGQNRPVLKRYTSSLEKEVP 928
Query: 436 --------VLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWL 487
LIK+E ETG V V Y ++ GL L + L Y + + ++ WL
Sbjct: 929 ATQTKETGALIKEEIAETGNVKLSVYWDYAKSV-GLCTTLFICLLYAGQNAVAIGANVWL 987
Query: 488 SYWTDQSSLKTHGPLFYNT-----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542
S WT+ ++ HG NT +Y+ L Q L+ + +++ +++ ++ AA+ LH A+L
Sbjct: 988 SAWTN--DVEEHGQQ-NNTSVRLGVYATLGILQGLLVMLSAFTMVVGAIQAARLLHTALL 1044
Query: 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 602
H+ +RAP FF T P GRI+NRF+KD+ I +A + M +ST V+I +
Sbjct: 1045 HNQIRAPQSFFDTTPSGRILNRFSKDIYVIHEVLAPTILMLFNSFYTSISTIVVIVASTP 1104
Query: 603 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 662
+ ++PL + + +Y +T+R++KRL+S++RSP+++ F E + G S IRAY
Sbjct: 1105 LFCVVVLPLAVFYGFVQRFYVATSRQLKRLESVSRSPIFSHFSETVTGTSVIRAYGRVQD 1164
Query: 663 MADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFAS 722
++ +D N + T + +NRWL + +E VG ++ +A FAV+ S
Sbjct: 1165 FKVLSDAKVDSNQKTTYPYIASNRWLGVHVEFVGNCVVLFSALFAVIGRNSLN-----PG 1219
Query: 723 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 782
+GL +SYAL +T L ++R S E+++ AVERV Y + +EAP V+ESNR P GWP
Sbjct: 1220 LVGLSVSYALQVTLSLNWMIRTLSDLESNIIAVERVKEYSKTETEAPWVLESNRAPEGWP 1279
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
SG ++F + +RYRP L VL L+ + +KVGIVGRTGAGKSSM LFRI+E
Sbjct: 1280 RSGVVEFRNYSVRYRPGLELVLKNLTLHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAE 1339
Query: 843 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 902
G I IDG ++A GL DLR L IIPQ P+LFSGT+R NLDPF +SD D+W LE +HL
Sbjct: 1340 GEIFIDGLNVAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSDEDIWRTLELSHL 1399
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
+ GLD Q SE G+N SVGQRQL+ L+RALLR+S++LVLDEATAA+D+ TD LI
Sbjct: 1400 SAFVSSQPTGLDFQCSEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLI 1459
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
Q TIR +F+ CT+L IAHRLNTI+D +R+L+LD G V E+D+P L++ G F M +
Sbjct: 1460 QGTIRTQFEDCTVLTIAHRLNTIMDYNRVLVLDKGVVAEFDSPVNLIA-AGGIFYGMAKD 1518
Query: 1023 TGAA 1026
G A
Sbjct: 1519 AGLA 1522
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1171 | ||||||
| 225443996 | 1623 | PREDICTED: ABC transporter C family memb | 0.998 | 0.720 | 0.876 | 0.0 | |
| 359483925 | 1616 | PREDICTED: ABC transporter C family memb | 0.998 | 0.723 | 0.876 | 0.0 | |
| 224116630 | 1617 | multidrug resistance protein ABC transpo | 0.998 | 0.722 | 0.864 | 0.0 | |
| 255571320 | 1569 | mgatp-energized glutathione s-conjugate | 0.999 | 0.745 | 0.865 | 0.0 | |
| 356555514 | 1620 | PREDICTED: ABC transporter C family memb | 0.995 | 0.719 | 0.840 | 0.0 | |
| 356549118 | 1620 | PREDICTED: ABC transporter C family memb | 0.995 | 0.719 | 0.838 | 0.0 | |
| 357447229 | 1712 | ABC transporter C family member [Medicag | 0.995 | 0.681 | 0.840 | 0.0 | |
| 171854661 | 1617 | putative multidrug resistance-associated | 0.994 | 0.719 | 0.822 | 0.0 | |
| 297823253 | 1623 | multidrug resistance-associated protein | 0.996 | 0.719 | 0.816 | 0.0 | |
| 15226801 | 1623 | ABC transporter C family member 2 [Arabi | 0.996 | 0.719 | 0.816 | 0.0 |
| >gi|225443996|ref|XP_002280819.1| PREDICTED: ABC transporter C family member 2 isoform 1 [Vitis vinifera] gi|297740795|emb|CBI30977.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2088 bits (5409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1171 (87%), Positives = 1105/1171 (94%), Gaps = 2/1171 (0%)
Query: 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 61
FP+QT +ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWENSFQSKVQ+VRN+EL
Sbjct: 454 FPIQTVVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQSKVQSVRNEEL 513
Query: 62 SWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 121
SWFRKA FL A N F+LNSIPV+V V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM
Sbjct: 514 SWFRKASFLGAFNVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 573
Query: 122 LPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 181
LPN+ITQ VNANVSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL
Sbjct: 574 LPNIITQAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTL 633
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241
N+NLDIPVG LVAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNA
Sbjct: 634 SNVNLDIPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNA 693
Query: 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301
TVR NILFGS FE ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMAR
Sbjct: 694 TVRGNILFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753
Query: 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 361
AVYSNSDV+IFDDPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRIILVH
Sbjct: 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVH 813
Query: 362 EGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLP 421
EGMVKEEGTFE+LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV + LP
Sbjct: 814 EGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLP 873
Query: 422 KEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRV 481
+S+T K KEGKSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTETLRV
Sbjct: 874 NNSSNTSKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRV 933
Query: 482 SSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541
SSSTWLS WTDQ +THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAM
Sbjct: 934 SSSTWLSQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAM 993
Query: 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 601
L SILRAPM+FFHTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVS
Sbjct: 994 LGSILRAPMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVS 1053
Query: 602 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 661
TMSLWAIMPLL+LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD
Sbjct: 1054 TMSLWAIMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1113
Query: 662 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721
RMADING+SMD NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+AFA
Sbjct: 1114 RMADINGQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFA 1173
Query: 722 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781
STMGLLLSYALNITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPPP W
Sbjct: 1174 STMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAW 1233
Query: 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 841
PSSGSIKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE
Sbjct: 1234 PSSGSIKFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELE 1293
Query: 842 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 901
RGRILID DI+KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAH
Sbjct: 1294 RGRILIDDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAH 1353
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
LKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDAL
Sbjct: 1354 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1413
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021
IQKTIREEFKSCTMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQ
Sbjct: 1414 IQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQ 1473
Query: 1022 STGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHN 1080
STGAANA+YLRSLVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTSS N
Sbjct: 1474 STGAANAEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQN 1533
Query: 1081 DLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEG 1140
DLQ+LE+ED+N+ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRMIEG
Sbjct: 1534 DLQQLEIEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEG 1593
Query: 1141 LSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
L+VMSRLARNRL QS+ E+RSIDWD +EM
Sbjct: 1594 LAVMSRLARNRL-QSENGFEDRSIDWDRIEM 1623
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483925|ref|XP_003633036.1| PREDICTED: ABC transporter C family member 2 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2087 bits (5407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1171 (87%), Positives = 1105/1171 (94%), Gaps = 2/1171 (0%)
Query: 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 61
FP+QT +ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWENSFQSKVQ+VRN+EL
Sbjct: 447 FPIQTVVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQSKVQSVRNEEL 506
Query: 62 SWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 121
SWFRKA FL A N F+LNSIPV+V V+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM
Sbjct: 507 SWFRKASFLGAFNVFMLNSIPVVVIVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 566
Query: 122 LPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 181
LPN+ITQ VNANVSLKR+EE LAEE+ILLPNPPL GLPAISI+NGYFSWDSKA+RPTL
Sbjct: 567 LPNIITQAVNANVSLKRLEELFLAEERILLPNPPLEPGLPAISIKNGYFSWDSKADRPTL 626
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241
N+NLDIPVG LVAIVGGTGEGKTSL+SAMLGELPP+SDASAVIRGTVAYVPQVSWIFNA
Sbjct: 627 SNVNLDIPVGGLVAIVGGTGEGKTSLVSAMLGELPPMSDASAVIRGTVAYVPQVSWIFNA 686
Query: 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301
TVR NILFGS FE ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMAR
Sbjct: 687 TVRGNILFGSPFEAARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 746
Query: 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 361
AVYSNSDV+IFDDPLSALDAHVGRQVFDRCI+GEL GKTRVLVTNQLHFLSQVDRIILVH
Sbjct: 747 AVYSNSDVYIFDDPLSALDAHVGRQVFDRCIKGELRGKTRVLVTNQLHFLSQVDRIILVH 806
Query: 362 EGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLP 421
EGMVKEEGTFE+LSNNG +FQKLMENAGKMEEYVEE E +D+KTSKP ANGV + LP
Sbjct: 807 EGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEENGAEENIDDKTSKPVANGVVDKLP 866
Query: 422 KEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRV 481
+S+T K KEGKSVLIKQEERETGVVS+KVL RYK+ALGGLWVV+IL +CY LTETLRV
Sbjct: 867 NNSSNTSKPKEGKSVLIKQEERETGVVSWKVLVRYKNALGGLWVVMILFMCYILTETLRV 926
Query: 482 SSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541
SSSTWLS WTDQ +THGP +YN IY++LSFGQVLVTLANSYWLI+SSLYAAKRLHDAM
Sbjct: 927 SSSTWLSQWTDQGGSRTHGPGYYNLIYAMLSFGQVLVTLANSYWLIMSSLYAAKRLHDAM 986
Query: 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS 601
L SILRAPM+FFHTNP+GRIINRFAKDLGDIDRNVAVFVNMF+GQ+SQLLSTFVLIGIVS
Sbjct: 987 LGSILRAPMLFFHTNPIGRIINRFAKDLGDIDRNVAVFVNMFLGQISQLLSTFVLIGIVS 1046
Query: 602 TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 661
TMSLWAIMPLL+LFY+AYLYYQ+TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD
Sbjct: 1047 TMSLWAIMPLLVLFYSAYLYYQNTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1106
Query: 662 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721
RMADING+SMD NIRYTLVNM +NRWLAIRLE +GGLMIWLTATFAV+QN AENQ+AFA
Sbjct: 1107 RMADINGQSMDNNIRYTLVNMSSNRWLAIRLEALGGLMIWLTATFAVMQNERAENQQAFA 1166
Query: 722 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781
STMGLLLSYALNITSLLT VLRLASLAENSLN+VERVG+YIELPSEAPLVIESNRPPP W
Sbjct: 1167 STMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGSYIELPSEAPLVIESNRPPPAW 1226
Query: 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 841
PSSGSIKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVELE
Sbjct: 1227 PSSGSIKFEDVVLRYRPELPPVLHGLSFTISPSDKVGIVGRTGAGKSSMLNALFRIVELE 1286
Query: 842 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 901
RGRILID DI+KFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALERAH
Sbjct: 1287 RGRILIDDCDISKFGLRDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAH 1346
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
LKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDAL
Sbjct: 1347 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1406
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021
IQKTIREEFKSCTMLIIAHRLNTIIDCDR+LLLD+GRVLEYDTPEELLSN+ S+FSKMVQ
Sbjct: 1407 IQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDAGRVLEYDTPEELLSNDRSAFSKMVQ 1466
Query: 1022 STGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHN 1080
STGAANA+YLRSLVLGGE ENKL RE+N+++DGQRRWLASSRW AAAQ+ALAVSLTSS N
Sbjct: 1467 STGAANAEYLRSLVLGGEGENKLGREDNRRLDGQRRWLASSRWTAAAQFALAVSLTSSQN 1526
Query: 1081 DLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEG 1140
DLQ+LE+ED+N+ILKKTKDAV+TLQGVLEGKHDK IEE+LNQ++VS DGWWS+LYRMIEG
Sbjct: 1527 DLQQLEIEDENSILKKTKDAVITLQGVLEGKHDKVIEETLNQYQVSRDGWWSSLYRMIEG 1586
Query: 1141 LSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
L+VMSRLARNRL QS+ E+RSIDWD +EM
Sbjct: 1587 LAVMSRLARNRL-QSENGFEDRSIDWDRIEM 1616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116630|ref|XP_002317351.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222860416|gb|EEE97963.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2042 bits (5291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1013/1172 (86%), Positives = 1101/1172 (93%), Gaps = 3/1172 (0%)
Query: 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 61
FP+QTF+ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWE+SFQ+KVQ VR+DEL
Sbjct: 447 FPIQTFVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQAKVQGVRDDEL 506
Query: 62 SWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 121
SWFRKA L ACNSFILNSIPV+VTV+SFGM+TLLGG+LTPARAFTSLSLFAVLRFPLFM
Sbjct: 507 SWFRKASLLGACNSFILNSIPVMVTVISFGMYTLLGGNLTPARAFTSLSLFAVLRFPLFM 566
Query: 122 LPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 181
LPNMITQVVNANVSLKR+EE LAEE+ILLPNP L LPA+SI+NGYFSWDSKAERPTL
Sbjct: 567 LPNMITQVVNANVSLKRLEELFLAEERILLPNPLLDPCLPAVSIKNGYFSWDSKAERPTL 626
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241
NINLD+P+GSLVA+VG TGEGKTSL+SAMLGELP SDAS VIRGTVAYVPQVSWIFNA
Sbjct: 627 SNINLDVPIGSLVAVVGSTGEGKTSLVSAMLGELPATSDASVVIRGTVAYVPQVSWIFNA 686
Query: 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301
TVRDNILFGS F+ ARYEKAIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMAR
Sbjct: 687 TVRDNILFGSPFDSARYEKAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 746
Query: 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 361
AVYSNSDV+IFDDPLSALDA VGRQVFD+CI+GELS KTR+LVTNQLHFLSQVDRIILVH
Sbjct: 747 AVYSNSDVYIFDDPLSALDAQVGRQVFDKCIKGELSKKTRILVTNQLHFLSQVDRIILVH 806
Query: 362 EGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDNDL 420
EGMVKEEGTFEDLSNNG LFQKLMENAGKMEEY E++ + E VD+KTS K ANGV N+L
Sbjct: 807 EGMVKEEGTFEDLSNNGMLFQKLMENAGKMEEYEEQENN-EIVDHKTSSKQVANGVMNNL 865
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLR 480
PK S T+K KEGKSVLIKQEERETGVV+ KVL RYK+ALGG WVV++L +CY +TE LR
Sbjct: 866 PKNVSGTKKPKEGKSVLIKQEERETGVVNLKVLIRYKNALGGAWVVMVLFMCYLMTEVLR 925
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
VSSSTWLS WT+Q + K HGPL+YN IYS LS GQV VTL NSYWLI SSLYAAKRLHDA
Sbjct: 926 VSSSTWLSNWTNQGTSKRHGPLYYNLIYSFLSIGQVSVTLLNSYWLITSSLYAAKRLHDA 985
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML+SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA+FVNMFMGQ+SQLLSTFVLIGIV
Sbjct: 986 MLNSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAIFVNMFMGQISQLLSTFVLIGIV 1045
Query: 601 STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
STMSLWAIMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY
Sbjct: 1046 STMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 1105
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA INGKSMD N+RYTLVNMGANRWLAIRLE +GG+MIW TATFAV+QNG A+NQ+AF
Sbjct: 1106 DRMASINGKSMDNNVRYTLVNMGANRWLAIRLETLGGIMIWFTATFAVMQNGRADNQQAF 1165
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSYALNITSLLTAVLRLASLAENSLN+VERVG YIELPSEAPLVIESNRPPPG
Sbjct: 1166 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNSVERVGTYIELPSEAPLVIESNRPPPG 1225
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPSSG+IKFEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVEL
Sbjct: 1226 WPSSGAIKFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVEL 1285
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
ERGRILID DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWEALERA
Sbjct: 1286 ERGRILIDDCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWEALERA 1345
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
HLKD IRRNSLGLD++V+EAG+NFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDA
Sbjct: 1346 HLKDVIRRNSLGLDSEVTEAGDNFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1405
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQKTIREEF+SCTMLIIAHRLNTIIDCDR++LLDSGRVLEYDTPEELLSNE S+FSKMV
Sbjct: 1406 LIQKTIREEFRSCTMLIIAHRLNTIIDCDRVILLDSGRVLEYDTPEELLSNENSAFSKMV 1465
Query: 1021 QSTGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSSH 1079
QSTGAANAQYLRSLV+GGE E++L REENKQ+DG RRWLASSRWAAAAQ+ALAVSLTSS
Sbjct: 1466 QSTGAANAQYLRSLVMGGERESRLGREENKQLDGPRRWLASSRWAAAAQFALAVSLTSSQ 1525
Query: 1080 NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIE 1139
NDLQ+LE+ED+N++LKKTKDAVVTLQ VLEGKHDK I+ESLNQ+++S DGWWSALY+M+E
Sbjct: 1526 NDLQQLEIEDENSVLKKTKDAVVTLQRVLEGKHDKVIDESLNQYQISRDGWWSALYKMVE 1585
Query: 1140 GLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
GL++MSRL R+RLHQSDY LE+++IDW+HVEM
Sbjct: 1586 GLAMMSRLGRHRLHQSDYGLEDKTIDWNHVEM 1617
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255571320|ref|XP_002526609.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] gi|223534049|gb|EEF35768.1| mgatp-energized glutathione s-conjugate pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2036 bits (5275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1015/1173 (86%), Positives = 1102/1173 (93%), Gaps = 3/1173 (0%)
Query: 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL 61
FP+QTF+ISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWENSFQ KVQNVR+DEL
Sbjct: 397 FPIQTFVISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWENSFQGKVQNVRDDEL 456
Query: 62 SWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 121
SWFRKA L ACN FILNSIPV+VTV+SFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM
Sbjct: 457 SWFRKASLLGACNGFILNSIPVVVTVISFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFM 516
Query: 122 LPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 181
LPN+ITQ VNANVSLKR+EE LLAEE+ILLPNPPL PAISI+NGYFSWDSKAE PTL
Sbjct: 517 LPNIITQAVNANVSLKRLEELLLAEERILLPNPPLDPVQPAISIKNGYFSWDSKAEMPTL 576
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-SAVIRGTVAYVPQVSWIFN 240
NIN+DIP GSLVAIVG TGEGKTSLISAMLGELP +SD SAVIRGTVAYVPQVSWIFN
Sbjct: 577 SNINVDIPTGSLVAIVGSTGEGKTSLISAMLGELPAMSDTTSAVIRGTVAYVPQVSWIFN 636
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFGS F+ RYEKAIDVTSLQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 637 ATVRDNILFGSTFDSTRYEKAIDVTSLQHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 696
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHV RQVFD+CI+GEL KTRVLVTNQLHFLSQVDRIILV
Sbjct: 697 RAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGELGRKTRVLVTNQLHFLSQVDRIILV 756
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDND 419
HEGMVKEEGTFE+LSNNG +FQKLMENAGKMEEYVEEKE+GET D KTS KP ANGV ND
Sbjct: 757 HEGMVKEEGTFEELSNNGMMFQKLMENAGKMEEYVEEKENGETEDQKTSSKPVANGVAND 816
Query: 420 LPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL 479
K ++T+ KEGKSVLIK+EERETGVVS++VL RYK+ALGG WVV+IL +CY LTE L
Sbjct: 817 FSKNVNETKNRKEGKSVLIKKEERETGVVSWRVLMRYKNALGGAWVVMILFMCYILTEVL 876
Query: 480 RVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539
RVSSSTWLS WTD+ + K+HGPL+YN +YS+LS GQV+VTL NSYWLIISSLYAA+RLHD
Sbjct: 877 RVSSSTWLSNWTDRGTTKSHGPLYYNLVYSILSVGQVMVTLLNSYWLIISSLYAARRLHD 936
Query: 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 599
AML+SILRAPMVFFHTNPLGRIINRFAKDLGDIDR+VA+FVNMF+GQVSQLLSTF+LIGI
Sbjct: 937 AMLNSILRAPMVFFHTNPLGRIINRFAKDLGDIDRSVAIFVNMFLGQVSQLLSTFILIGI 996
Query: 600 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 659
VSTMSLW+IMPLL+LFY AYLYYQSTAREVKR+DSI+RSPVYAQFGEALNGLSTIRAYKA
Sbjct: 997 VSTMSLWSIMPLLVLFYGAYLYYQSTAREVKRMDSISRSPVYAQFGEALNGLSTIRAYKA 1056
Query: 660 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 719
YDRMADING+SMD NIR+TLVNM ANRWLAIRLE +GG+MIWLTATFAV+QNG AENQ+A
Sbjct: 1057 YDRMADINGRSMDNNIRFTLVNMSANRWLAIRLETLGGIMIWLTATFAVMQNGRAENQQA 1116
Query: 720 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779
FASTMGLLLSYALNIT LLT VLRLASLAENSLNAVERVG YI+LPSEAP VIE NRPPP
Sbjct: 1117 FASTMGLLLSYALNITGLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPPVIEGNRPPP 1176
Query: 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
GWPSSGSIKFEDVVLRYRPELPPVLHGLSFT+ PSDKVGIVGRTGAGKSSMLN LFRIVE
Sbjct: 1177 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTVSPSDKVGIVGRTGAGKSSMLNALFRIVE 1236
Query: 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 899
LERGRILIDG+DIAKFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALER
Sbjct: 1237 LERGRILIDGYDIAKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALER 1296
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
AHLKD IRRNSLGL+A+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTD
Sbjct: 1297 AHLKDVIRRNSLGLNAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1356
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
ALIQKTIREEF+SCTMLIIAHRLNTIIDCDRILLLDSG VLEYDTPEELLSNEGS+FSKM
Sbjct: 1357 ALIQKTIREEFRSCTMLIIAHRLNTIIDCDRILLLDSGEVLEYDTPEELLSNEGSAFSKM 1416
Query: 1020 VQSTGAANAQYLRSLVLGGEAENKL-REENKQIDGQRRWLASSRWAAAAQYALAVSLTSS 1078
VQSTGAANAQYLR LVLGGE E++ REENK++DGQR+W+ASSRWAAAAQ+ALAVSLTSS
Sbjct: 1417 VQSTGAANAQYLRGLVLGGEGESRFGREENKRLDGQRKWMASSRWAAAAQFALAVSLTSS 1476
Query: 1079 HNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMI 1138
HNDLQRLE++D+N+IL+KTKDAV+TLQGVLEGKHDK IEESLNQH++S DGWWSALY+M+
Sbjct: 1477 HNDLQRLEIDDENSILEKTKDAVITLQGVLEGKHDKVIEESLNQHQISKDGWWSALYKMV 1536
Query: 1139 EGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
EGL++MSRL RNRLHQSDY ++RSI+WD+VEM
Sbjct: 1537 EGLAMMSRLGRNRLHQSDYGFDDRSINWDNVEM 1569
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555514|ref|XP_003546076.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1981 bits (5132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 986/1173 (84%), Positives = 1079/1173 (91%), Gaps = 7/1173 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QTFIISRMQKL+KEGLQRTDKRIGLMNEILAAMD +K YAWE+SFQSKVQ VR+DE
Sbjct: 453 MFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTLKYYAWESSFQSKVQIVRDDE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKA L ACN FILNSIPV VTV++FG+FTLLGGDLTPARAFTSLSLF+VLRFPLF
Sbjct: 513 LSWFRKASLLGACNGFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLF 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN ITQVVNANVSLKR+E+ LLAEE++LLPNPP+ GLPAISI+NGYFSWD+KAER +
Sbjct: 573 MLPNTITQVVNANVSLKRLEDLLLAEERVLLPNPPIEPGLPAISIKNGYFSWDAKAERAS 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLDIPVG LVA+VG TGEGKTSL+SAMLGELPP++D+S V+RGTVAYVPQVSWIFN
Sbjct: 633 LSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSSVVLRGTVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFGS F+PARY++AI+VT LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATVRDNILFGSVFDPARYQRAINVTELQHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHV RQVFD+CI+G+L GKTRVLVTNQLHFLSQV+RIILV
Sbjct: 753 RAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGDLRGKTRVLVTNQLHFLSQVNRIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDNK-TSKPAANGVDN 418
HEGMVKEEGTFE+LSN+G LFQKLMENAGKMEEY EE K D ET D K +SKP ANG N
Sbjct: 813 HEGMVKEEGTFEELSNHGPLFQKLMENAGKMEEYEEEEKVDTETTDQKPSSKPVANGAIN 872
Query: 419 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 478
D K S K KEGKSVLIKQEER TGVVS VL+RYK ALGG WVV +L CY TET
Sbjct: 873 DHAKSGS---KPKEGKSVLIKQEERATGVVSLNVLTRYKSALGGFWVVFVLFACYVSTET 929
Query: 479 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 538
LR+SSSTWLS+WTDQS+ + + P+FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH
Sbjct: 930 LRISSSTWLSHWTDQSATEGYNPVFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLH 989
Query: 539 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 598
+AML SILRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+LIG
Sbjct: 990 EAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIG 1049
Query: 599 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 658
IVSTMSLWAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYK
Sbjct: 1050 IVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYK 1109
Query: 659 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 718
AYDRMADINGKSMD NIR+TLVNM NRWLAIRLE +GGLMIWLTATFAV+QNG AENQ+
Sbjct: 1110 AYDRMADINGKSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQ 1169
Query: 719 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778
FASTMGLLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP VI++NRPP
Sbjct: 1170 EFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSVIDNNRPP 1229
Query: 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
PGWPS GSI+FEDVVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIV
Sbjct: 1230 PGWPSLGSIRFEDVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIV 1289
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 898
ELE+GRILID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALE
Sbjct: 1290 ELEQGRILIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALE 1349
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
RAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT
Sbjct: 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1409
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+FSK
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSK 1469
Query: 1019 MVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSS 1078
MVQSTGAAN+QYLRSL LGG+ REENK +D +R+WLASSRWAAAAQ+ALAVSLTSS
Sbjct: 1470 MVQSTGAANSQYLRSLALGGDKSE--REENKHLDARRKWLASSRWAAAAQFALAVSLTSS 1527
Query: 1079 HNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMI 1138
HNDLQRLEVED+N+ILKKTKDA++TLQGVLE KHDKEIEESL Q ++S DGWWS+LY+MI
Sbjct: 1528 HNDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLEQRQISPDGWWSSLYKMI 1587
Query: 1139 EGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
EGL++MSRL NR HQSD+ E+RSI++D V+M
Sbjct: 1588 EGLAIMSRLTVNRFHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549118|ref|XP_003542944.1| PREDICTED: ABC transporter C family member 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1972 bits (5108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1173 (83%), Positives = 1078/1173 (91%), Gaps = 7/1173 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QTFIISRMQK +KEGLQRTDKRIGLMNEILAAMD VK YAWE+SFQSKVQ VRNDE
Sbjct: 453 MFPLQTFIISRMQKFSKEGLQRTDKRIGLMNEILAAMDTVKYYAWESSFQSKVQIVRNDE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKA L ACN+FILNSIPV VTV++FG+FTLLGGDLTPARAFTSLSLF+VLRFPLF
Sbjct: 513 LSWFRKASLLGACNAFILNSIPVFVTVITFGVFTLLGGDLTPARAFTSLSLFSVLRFPLF 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN ITQVVNANVSLKR+E+ LLAEE+ILL NPPL GLPAISI+NGYFSWD+KAER T
Sbjct: 573 MLPNTITQVVNANVSLKRLEDLLLAEERILLSNPPLEPGLPAISIKNGYFSWDTKAERAT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLDIPVG LVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWIFN
Sbjct: 633 LSNINLDIPVGCLVAVVGSTGEGKTSLVSAMLGELPPMADSTVVLRGTVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDN+LFGS F+P RYE+AI+VT LQHDL+LLPGGD TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATVRDNVLFGSVFDPTRYERAINVTELQHDLELLPGGDHTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHV RQVFD+CI+G+L KTRVLVTNQLHFLSQVDRIILV
Sbjct: 753 RAVYSNSDVYIFDDPLSALDAHVARQVFDKCIKGDLREKTRVLVTNQLHFLSQVDRIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNK--TSKPAANGVDN 418
HEGMVKEEGTFE+LSN+G LFQKLMENAGKMEEY EE++ ++ +S+P ANG N
Sbjct: 813 HEGMVKEEGTFEELSNHGLLFQKLMENAGKMEEYEEEEKVVTETTDQKPSSEPVANGSVN 872
Query: 419 DLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTET 478
D K S K KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV +L CY TET
Sbjct: 873 DHAKSGS---KPKEGKSVLIKQEERETGVVSWNVLLRYKNALGGFWVVFVLFACYVSTET 929
Query: 479 LRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 538
LR+SSSTWLS+WTDQS+ K + P FYN IY+ LSFGQVLVTL NSYWLIISSLYAA+RLH
Sbjct: 930 LRISSSTWLSHWTDQSATKGYNPAFYNMIYAALSFGQVLVTLTNSYWLIISSLYAARRLH 989
Query: 539 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 598
+AML SILRAPMVFF TNPLGR+INRFAKDLGDIDRNVA FVNMF+GQVSQLLSTF+LIG
Sbjct: 990 EAMLSSILRAPMVFFQTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFILIG 1049
Query: 599 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYK 658
IVSTMSLWAI+PLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYK
Sbjct: 1050 IVSTMSLWAILPLLVLFYVAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYK 1109
Query: 659 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 718
AYDRMADINGKSMD NIR+TLVN+ NRWLAIRLE +GGLMIWLTATFAV+QNG AENQ+
Sbjct: 1110 AYDRMADINGKSMDNNIRFTLVNISGNRWLAIRLETLGGLMIWLTATFAVMQNGRAENQQ 1169
Query: 719 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778
FASTMGLLLSYALNITSLLT VLRLASLAENSLNAVER+G YI+LPSEAP +I+ NRPP
Sbjct: 1170 EFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERIGTYIDLPSEAPSIIDDNRPP 1229
Query: 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
PGWPSSGSI+FEDVVLRYR ELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIV
Sbjct: 1230 PGWPSSGSIRFEDVVLRYRAELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIV 1289
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 898
ELERGRILID +D+AKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALE
Sbjct: 1290 ELERGRILIDDYDVAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALE 1349
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
RAHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT
Sbjct: 1350 RAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 1409
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD G+VLEYDTPEELLSNEGS+FSK
Sbjct: 1410 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSAFSK 1469
Query: 1019 MVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSS 1078
MVQSTGAANAQYLRSL LGG+ REEN+ +DG+R+WLASSRWAAAAQ+ALAVSLTSS
Sbjct: 1470 MVQSTGAANAQYLRSLALGGDKSE--REENEHLDGKRKWLASSRWAAAAQFALAVSLTSS 1527
Query: 1079 HNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMI 1138
HNDLQRLEVED+N+ILKKTKDA++TLQGVLE K+DKEIEESLNQ +VS +GWWS+LY+MI
Sbjct: 1528 HNDLQRLEVEDENSILKKTKDALITLQGVLERKYDKEIEESLNQRQVSPEGWWSSLYKMI 1587
Query: 1139 EGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
EGL++MSRLA+NRLHQSD+ E+RSI++D V+M
Sbjct: 1588 EGLAMMSRLAKNRLHQSDFGFEDRSINFDQVDM 1620
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447229|ref|XP_003593890.1| ABC transporter C family member [Medicago truncatula] gi|355482938|gb|AES64141.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1964 bits (5088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1172 (84%), Positives = 1078/1172 (91%), Gaps = 6/1172 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ + T IISRMQKL+KEGLQRTDKRIGLMNEILAAMD VKCYAWE+SFQS+V NVRNDE
Sbjct: 546 LIKLNTVIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSRVVNVRNDE 605
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKA L ACNSFILNSIPV VTV+SFG+FTLLGGDLTPARAFTSLSLFAVLRFPLF
Sbjct: 606 LSWFRKASLLGACNSFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 665
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQVVNANVSLKR+EE LLAEE+ILLPNPPL GLPAISIRNGYFSWD+KAER T
Sbjct: 666 MLPNIITQVVNANVSLKRLEELLLAEERILLPNPPLEPGLPAISIRNGYFSWDAKAERAT 725
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLDIPVGSLVA+VG TGEGKTSL+SAMLGELPP++D++ V+RGTVAYVPQVSWIFN
Sbjct: 726 LSNINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPPIADSTVVLRGTVAYVPQVSWIFN 785
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDN+LFGS F+P RYE+AI+VT L+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 786 ATVRDNVLFGSVFDPIRYERAINVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 845
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV +FDDPLSALDAHV RQVFD+CI+GEL GKTRVLVTNQLHFLSQVDRIILV
Sbjct: 846 RAVYSNSDVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILV 905
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS-KPAANGVDND 419
HEGMVKEEGTFE+LS+ G LFQKLMENAGKMEEY EEK D E D K+S KP NG ND
Sbjct: 906 HEGMVKEEGTFEELSSQGLLFQKLMENAGKMEEYEEEKVDIEATDQKSSSKPVVNGAVND 965
Query: 420 LPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL 479
K S K K GKS+LIKQEERETGVVS VL RYK+ALGG WV+L+L CYF TE L
Sbjct: 966 NAKSES---KPKGGKSILIKQEERETGVVSLNVLIRYKNALGGTWVILVLFACYFSTEAL 1022
Query: 480 RVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539
RVSSSTWLS+WTDQS++ + P FYN +Y+ LSFGQV V+L NSYWLIISSLYAA+RLH+
Sbjct: 1023 RVSSSTWLSHWTDQSAVDGYNPAFYNLVYAALSFGQVFVSLINSYWLIISSLYAARRLHE 1082
Query: 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 599
AMLHSILRAPMVFFHTNPLGR+INRFAKDLGDIDRNVA FV+MF+GQ+SQLLSTF+LIGI
Sbjct: 1083 AMLHSILRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVSMFLGQISQLLSTFILIGI 1142
Query: 600 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 659
VSTMSLWAIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGLSTIRAYKA
Sbjct: 1143 VSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKA 1202
Query: 660 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 719
YDRMADING+SMD NIRYTLVN+ ANRWLAIRLE +GGLMIW TATFAV+QNG AENQ+
Sbjct: 1203 YDRMADINGRSMDNNIRYTLVNISANRWLAIRLETLGGLMIWFTATFAVMQNGRAENQQE 1262
Query: 720 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779
FASTMGLLLSYALNITSLLT VLRLASLAENSLN+VERVG YI+LPSEAP VI+ NRPPP
Sbjct: 1263 FASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERVGTYIDLPSEAPSVIDDNRPPP 1322
Query: 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
GWPSSGSIKF++VVLRYRPELPPVLHGLSFTI PSDKVGIVGRTGAGKSSMLN LFRIVE
Sbjct: 1323 GWPSSGSIKFDEVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVE 1382
Query: 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 899
LE+GRILID DIAKFGL DLRK+LGIIPQSPVLFSGTVRFNLDPF+EH+DADLWEALER
Sbjct: 1383 LEKGRILIDDRDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALER 1442
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
AHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTD
Sbjct: 1443 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1502
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
ALIQKTIREEFKSCTMLIIAHRLNTIIDCDR+LLLD G+VLEY+TPEELLSNEGS+FSKM
Sbjct: 1503 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDGGKVLEYNTPEELLSNEGSAFSKM 1562
Query: 1020 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSH 1079
VQSTGAANAQYLRSLV GG+ REEN+ +DGQR+WLASSRWAAAAQYALAVSLTSS
Sbjct: 1563 VQSTGAANAQYLRSLVHGGDKTE--REENQHLDGQRKWLASSRWAAAAQYALAVSLTSSQ 1620
Query: 1080 NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIE 1139
NDLQRLEVED+N+ILKKTKDA++TLQGVLE KHDKEIEESLNQ ++S++GWWS+LY+MIE
Sbjct: 1621 NDLQRLEVEDENSILKKTKDALITLQGVLERKHDKEIEESLNQRQISSEGWWSSLYKMIE 1680
Query: 1140 GLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
GL++MSRLARNRLHQSD+ E+ SI++D ++M
Sbjct: 1681 GLAMMSRLARNRLHQSDFGFEDTSINFDQIDM 1712
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|171854661|dbj|BAG16520.1| putative multidrug resistance-associated protein [Capsicum chinense] | Back alignment and taxonomy information |
|---|
Score = 1942 bits (5030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1172 (82%), Positives = 1073/1172 (91%), Gaps = 8/1172 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT++IS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VK YAWENSFQSKVQ VRN+E
Sbjct: 453 MFPIQTYVISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKSYAWENSFQSKVQGVRNEE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSW+RK+Q L A NSFILNSIPV+V V+SFG+F+LLGGDLTPARAFT+LSLFAVLRFPLF
Sbjct: 513 LSWYRKSQLLGALNSFILNSIPVVVIVISFGVFSLLGGDLTPARAFTALSLFAVLRFPLF 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQVVNANVSLKR+E+ LLAEE+ILLPNPPL GLPAISI+NG FSW+SKAE+PT
Sbjct: 573 MLPNIITQVVNANVSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGCFSWESKAEKPT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLDIP+GSLVAIVGGTGEGKTSLISAMLGELP SD+ VIRGTVAYVPQVSWIFN
Sbjct: 633 LSNINLDIPIGSLVAIVGGTGEGKTSLISAMLGELPSFSDSVVVIRGTVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVR+NILFGSA + ARY +AIDVT+L+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATVRENILFGSAIDAARYNRAIDVTALRHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV IFDDPLSALDA VGRQVF+RCIR EL GKTRVLVTNQLHFLSQVD+IILV
Sbjct: 753 RAVYSNSDVCIFDDPLSALDADVGRQVFERCIREELKGKTRVLVTNQLHFLSQVDKIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKE-DGETVDNKTSKPAANGVDND 419
H+GMVKEEGTFE LSNNG LFQKLMENAGKMEEY EEKE DG ++K+SKP NG N
Sbjct: 813 HDGMVKEEGTFEYLSNNGVLFQKLMENAGKMEEYTEEKENDG---NDKSSKPVVNGEANG 869
Query: 420 LPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL 479
+ KE + KEGKSVLIKQEERETGVVS+ VL RYK+ALGG WVV+IL +CYFL E L
Sbjct: 870 VAKEVG--KDKKEGKSVLIKQEERETGVVSWNVLMRYKNALGGSWVVIILFVCYFLIEAL 927
Query: 480 RVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539
RV SSTWLS+WTDQSS + FYN IYSLLS GQV+VTL NS+WLI SSLYAAK LHD
Sbjct: 928 RVGSSTWLSFWTDQSSSTRYSAGFYNLIYSLLSLGQVMVTLMNSFWLITSSLYAAKMLHD 987
Query: 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 599
AML SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA FV+MF+GQV QL+STFVLIGI
Sbjct: 988 AMLGSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAPFVSMFLGQVFQLISTFVLIGI 1047
Query: 600 VSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 659
VSTMSLWAIMPLL+LFY AYLYYQSTAREVKRLDSI+RSPVYAQFGEALNGL+TIRAYKA
Sbjct: 1048 VSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLATIRAYKA 1107
Query: 660 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 719
YDRMA+INGKS+D NIR+TLVNM NRWLAIRLE VGG+MIWLTATFAVVQNG AENQ+A
Sbjct: 1108 YDRMANINGKSVDNNIRFTLVNMSGNRWLAIRLETVGGVMIWLTATFAVVQNGRAENQQA 1167
Query: 720 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779
FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG YIELPSE P +IE +RPPP
Sbjct: 1168 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIELPSEGPSIIEGSRPPP 1227
Query: 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
GWPS+GSI+FE+VVLRYRPELPPVLHG+SFTI PSDKVG+VGRTGAGKSSM N LFR+VE
Sbjct: 1228 GWPSAGSIRFENVVLRYRPELPPVLHGISFTISPSDKVGVVGRTGAGKSSMFNALFRLVE 1287
Query: 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 899
ERGRILID D++KFGL DLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LER
Sbjct: 1288 PERGRILIDDCDVSKFGLTDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLER 1347
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
AHLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTD
Sbjct: 1348 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1407
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL+SG++LEYDTPE LL EGS+FS+M
Sbjct: 1408 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLESGQLLEYDTPEVLLQKEGSAFSRM 1467
Query: 1020 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSH 1079
VQSTGAANAQYLRSLV GGE N + +KQ+DGQRRWLAS+RWAAAAQ+ALAV+LTSS
Sbjct: 1468 VQSTGAANAQYLRSLVFGGEEGNSI-ARDKQLDGQRRWLASTRWAAAAQFALAVTLTSSQ 1526
Query: 1080 NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIE 1139
NDL +LE+ED++NILKKTK+AV+TLQGVLEGKHDK+IEE+L+Q++VS D WWS+LY+MIE
Sbjct: 1527 NDLVQLEIEDEDNILKKTKNAVITLQGVLEGKHDKDIEETLDQYQVSRDRWWSSLYKMIE 1586
Query: 1140 GLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
GL++MS+LARNRL Q++++ ++++I+WD EM
Sbjct: 1587 GLAMMSKLARNRL-QAEFEFDDKTINWDRAEM 1617
|
Source: Capsicum chinense Species: Capsicum chinense Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823253|ref|XP_002879509.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] gi|297325348|gb|EFH55768.1| multidrug resistance-associated protein 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1941 bits (5029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1176 (81%), Positives = 1066/1176 (90%), Gaps = 9/1176 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 452 MFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 511
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLF
Sbjct: 512 LSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 571
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPT
Sbjct: 572 MLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPT 631
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFN
Sbjct: 632 LSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAMVTLRGSVAYVPQVSWIFN 691
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVR+NILFGS F+ +YE+ IDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 692 ATVRENILFGSPFDREKYERVIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 751
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYS+SDV+IFDDPLSALDAHVG+QVF++CI+ EL+ KTRVLVTNQLHFLSQVDRI+LV
Sbjct: 752 RAVYSDSDVYIFDDPLSALDAHVGQQVFEKCIKRELAQKTRVLVTNQLHFLSQVDRIVLV 811
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEG VKEEGT+E+LSNNG LFQ+LMENAGK+EEY EE + E D +P ANG N L
Sbjct: 812 HEGTVKEEGTYEELSNNGPLFQRLMENAGKVEEYSEENGEAEA-DQAVVQPVANGNTNGL 870
Query: 421 PKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFL 475
+ SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY L
Sbjct: 871 QMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVL 930
Query: 476 TETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535
TE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK
Sbjct: 931 TEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAK 990
Query: 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 595
+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST V
Sbjct: 991 KLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVV 1050
Query: 596 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIR 655
LIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIR
Sbjct: 1051 LIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIR 1110
Query: 656 AYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAE 715
AYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AE
Sbjct: 1111 AYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAE 1170
Query: 716 NQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775
NQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAPLVIE+N
Sbjct: 1171 NQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPLVIENN 1230
Query: 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835
RPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LF
Sbjct: 1231 RPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALF 1290
Query: 836 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895
RIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE
Sbjct: 1291 RIVEVEKGRILIDECDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWE 1350
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD
Sbjct: 1351 SLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1410
Query: 956 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015
VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSS
Sbjct: 1411 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSS 1470
Query: 1016 FSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSL 1075
FSKMVQSTGAANA+YLRSLVL + + R++++ + GQR+WLASSRWAAAAQ+ALAVSL
Sbjct: 1471 FSKMVQSTGAANAEYLRSLVLDNK---RARDDSQHLQGQRKWLASSRWAAAAQFALAVSL 1527
Query: 1076 TSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALY 1135
TSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL + +S +GW S+LY
Sbjct: 1528 TSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEERNISKEGWLSSLY 1587
Query: 1136 RMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
RM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1588 RMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15226801|ref|NP_181013.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|334184682|ref|NP_001189675.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|90103509|sp|Q42093.2|AB2C_ARATH RecName: Full=ABC transporter C family member 2; Short=ABC transporter ABCC.2; Short=AtABCC2; AltName: Full=ATP-energized glutathione S-conjugate pump 2; AltName: Full=Glutathione S-conjugate-transporting ATPase 2; AltName: Full=Multidrug resistance-associated protein 2 gi|3132479|gb|AAC16268.1| ABC transporter (AtMRP2) [Arabidopsis thaliana] gi|330253911|gb|AEC09005.1| ABC transporter C family member 2 [Arabidopsis thaliana] gi|330253912|gb|AEC09006.1| ABC transporter C family member 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1939 bits (5024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1176 (81%), Positives = 1064/1176 (90%), Gaps = 9/1176 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 452 MFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 511
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLF
Sbjct: 512 LSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 571
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPT
Sbjct: 572 MLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPT 631
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFN
Sbjct: 632 LSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFN 691
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 692 ATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 751
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LV
Sbjct: 752 RAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLV 811
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L
Sbjct: 812 HEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGL 870
Query: 421 PKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFL 475
+ SD +K+KEG KSVLIKQEERETGVVS++VL RY+DALGG WVV++LLLCY L
Sbjct: 871 QMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVL 930
Query: 476 TETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535
TE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK
Sbjct: 931 TEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAK 990
Query: 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 595
+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST V
Sbjct: 991 KLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVV 1050
Query: 596 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIR 655
LIGIVST+SLWAIMPLL+LFY AYLYYQ+TAREVKR+DSI+RSPVYAQFGEALNGLSTIR
Sbjct: 1051 LIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIR 1110
Query: 656 AYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAE 715
AYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AE
Sbjct: 1111 AYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAE 1170
Query: 716 NQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775
NQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+N
Sbjct: 1171 NQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENN 1230
Query: 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835
RPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LF
Sbjct: 1231 RPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALF 1290
Query: 836 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895
RIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE
Sbjct: 1291 RIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWE 1350
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD
Sbjct: 1351 SLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1410
Query: 956 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015
VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSS
Sbjct: 1411 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSS 1470
Query: 1016 FSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSL 1075
FSKMVQSTGAANA+YLRSLVL + + ++++ + GQR+WLASSRWAAAAQ+ALA SL
Sbjct: 1471 FSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASL 1527
Query: 1076 TSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALY 1135
TSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LY
Sbjct: 1528 TSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLY 1587
Query: 1136 RMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
RM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1588 RMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1171 | ||||||
| TAIR|locus:2061559 | 1623 | ABCC2 "ATP-binding cassette C2 | 0.996 | 0.719 | 0.775 | 0.0 | |
| TAIR|locus:2204202 | 1622 | ABCC1 "ATP-binding cassette C1 | 0.999 | 0.721 | 0.752 | 0.0 | |
| TAIR|locus:2028155 | 1495 | ABCC11 "ATP-binding cassette C | 0.880 | 0.689 | 0.706 | 0.0 | |
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.499 | 0.373 | 0.443 | 6.2e-216 | |
| UNIPROTKB|Q28689 | 1564 | ABCC2 "Canalicular multispecif | 0.578 | 0.433 | 0.393 | 8.3e-212 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.500 | 0.379 | 0.423 | 1.2e-208 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.512 | 0.388 | 0.415 | 1.2e-208 | |
| UNIPROTKB|F1S8V9 | 1544 | ABCC2 "Uncharacterized protein | 0.563 | 0.427 | 0.384 | 6.8e-208 | |
| RGD|2366 | 1541 | Abcc2 "ATP-binding cassette, s | 0.508 | 0.386 | 0.420 | 2.6e-206 | |
| UNIPROTKB|F1MIP7 | 1543 | ABCC2 "Uncharacterized protein | 0.497 | 0.377 | 0.413 | 5.4e-206 |
| TAIR|locus:2061559 ABCC2 "ATP-binding cassette C2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4648 (1641.2 bits), Expect = 0., P = 0.
Identities = 912/1176 (77%), Positives = 1011/1176 (85%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT IIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 452 MFPLQTVIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 511
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRK+Q L A N FILNSIPVLVT+VSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLF
Sbjct: 512 LSWFRKSQLLGALNMFILNSIPVLVTIVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 571
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQVVNANVSLKR+EE L EE+ILLPNPP+ G PAISIRNGYFSWDSK +RPT
Sbjct: 572 MLPNIITQVVNANVSLKRLEEVLATEERILLPNPPIEPGEPAISIRNGYFSWDSKGDRPT 631
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLD+P+GSLVA+VG TGEGKTSLISA+LGELP SDA +RG+VAYVPQVSWIFN
Sbjct: 632 LSNINLDVPLGSLVAVVGSTGEGKTSLISAILGELPATSDAIVTLRGSVAYVPQVSWIFN 691
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFGS F+ +YE+AIDVTSL+HDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 692 ATVRDNILFGSPFDREKYERAIDVTSLKHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 751
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHVG+QVF++CI+ EL KTRVLVTNQLHFLSQVDRI+LV
Sbjct: 752 RAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTNQLHFLSQVDRIVLV 811
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEG VKEEGT+E+LS+NG LFQ+LMENAGK+EEY EE + E D +P ANG N L
Sbjct: 812 HEGTVKEEGTYEELSSNGPLFQRLMENAGKVEEYSEENGEAEA-DQTAEQPVANGNTNGL 870
Query: 421 PKEASDTRKTKEG-----KSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFL 475
+ SD +K+KEG KSVLIKQEERETGVVS++VL RY+DA CY L
Sbjct: 871 QMDGSDDKKSKEGNKKGGKSVLIKQEERETGVVSWRVLKRYQDALGGAWVVMMLLLCYVL 930
Query: 476 TETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535
TE RV+SSTWLS WTD + K+HGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAK
Sbjct: 931 TEVFRVTSSTWLSEWTDAGTPKSHGPLFYNLIYALLSFGQVLVTLTNSYWLIMSSLYAAK 990
Query: 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 595
+LHD MLHSILRAPM FFHTNPLGRIINRFAKDLGDIDR VAVFVNMFMGQVSQLLST V
Sbjct: 991 KLHDNMLHSILRAPMSFFHTNPLGRIINRFAKDLGDIDRTVAVFVNMFMGQVSQLLSTVV 1050
Query: 596 LIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIR 655
LIGIVST+SLWAIMP Q+TAREVKR+DSI+RSPVYAQFGEALNGLSTIR
Sbjct: 1051 LIGIVSTLSLWAIMPLLVLFYGAYLYYQNTAREVKRMDSISRSPVYAQFGEALNGLSTIR 1110
Query: 656 AYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAE 715
AYKAYDRMADING+SMD NIR+TLVNMGANRWL IRLE +GGLMIWLTA+FAV+QNG AE
Sbjct: 1111 AYKAYDRMADINGRSMDNNIRFTLVNMGANRWLGIRLETLGGLMIWLTASFAVMQNGRAE 1170
Query: 716 NQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775
NQ+AFASTMGLLLSYALNITSLLT VLRLASLAENSLNAVERVGNYIE+P EAP VIE+N
Sbjct: 1171 NQQAFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGNYIEIPPEAPPVIENN 1230
Query: 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835
RPPPGWPSSGSIKFEDVVLRYRP+LPPVLHG+SF I P+DKVGIVGRTGAGKSS+LN LF
Sbjct: 1231 RPPPGWPSSGSIKFEDVVLRYRPQLPPVLHGVSFFIHPTDKVGIVGRTGAGKSSLLNALF 1290
Query: 836 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895
RIVE+E+GRILID D+ KFGLMDLRK+LGIIPQSPVLFSGTVRFNLDPF EH+DADLWE
Sbjct: 1291 RIVEVEKGRILIDDCDVGKFGLMDLRKVLGIIPQSPVLFSGTVRFNLDPFGEHNDADLWE 1350
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVD 955
+LERAHLKD IRRN LGLDA+VSEAGENFSVGQRQ KILVLDEATAAVD
Sbjct: 1351 SLERAHLKDTIRRNPLGLDAEVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 1410
Query: 956 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015
VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD+IL+LDSGRV E+ +PE LLSNEGSS
Sbjct: 1411 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDKILVLDSGRVQEFSSPENLLSNEGSS 1470
Query: 1016 FSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGXXXXXXXXXXXXXXXXXXXVSL 1075
FSKMVQSTGAANA+YLRSLVL + + ++++ + G SL
Sbjct: 1471 FSKMVQSTGAANAEYLRSLVLDNK---RAKDDSHHLQGQRKWLASSRWAAAAQFALAASL 1527
Query: 1076 TSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALY 1135
TSSHNDLQ LE+ED ++ILK+T DAVVTL+ VLEGKHDKEI ESL +H +S +GW S+LY
Sbjct: 1528 TSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHDKEIAESLEEHNISREGWLSSLY 1587
Query: 1136 RMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
RM+EGL+VMSRLARNR+ Q DY+ E + DWD+VEM
Sbjct: 1588 RMVEGLAVMSRLARNRMQQPDYNFEGNTFDWDNVEM 1623
|
|
| TAIR|locus:2204202 ABCC1 "ATP-binding cassette C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4549 (1606.4 bits), Expect = 0., P = 0.
Identities = 882/1172 (75%), Positives = 1004/1172 (85%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QT IIS+ QKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 452 MFPIQTVIISKTQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 511
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A N FILNSIPVLVTVVSFG+F+LLGGDLTPARAFTSLSLF+VLRFPLF
Sbjct: 512 LSWFRKAQLLSAFNMFILNSIPVLVTVVSFGVFSLLGGDLTPARAFTSLSLFSVLRFPLF 571
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQ+VNANVSL R+EE L EE++LLPNPP+ G PAISIRNGYFSWDSKA+RPT
Sbjct: 572 MLPNIITQMVNANVSLNRLEEVLSTEERVLLPNPPIEPGQPAISIRNGYFSWDSKADRPT 631
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLDIP+GSLVA+VG TGEGKTSLISAMLGELP SDA+ +RG+VAYVPQVSWIFN
Sbjct: 632 LSNINLDIPLGSLVAVVGSTGEGKTSLISAMLGELPARSDATVTLRGSVAYVPQVSWIFN 691
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFG+ F+ +YE+ IDVT+LQHDL+LLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 692 ATVRDNILFGAPFDQEKYERVIDVTALQHDLELLPGGDLTEIGERGVNISGGQKQRVSMA 751
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV I DDPLSALDAHVG+QVF++CI+ EL TRVLVTNQLHFLSQVD+I+LV
Sbjct: 752 RAVYSNSDVCILDDPLSALDAHVGQQVFEKCIKRELGQTTRVLVTNQLHFLSQVDKILLV 811
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEG VKEEGT+E+L ++G LFQ+LMENAGK+E+Y EE + E VD + KP NG N+L
Sbjct: 812 HEGTVKEEGTYEELCHSGPLFQRLMENAGKVEDYSEENGEAE-VDQTSVKPVENGNANNL 870
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLR 480
K+ +T+ +KEG SVL+K+EERETGVVS+KVL RY++A CY LT+ R
Sbjct: 871 QKDGIETKNSKEGNSVLVKREERETGVVSWKVLERYQNALGGAWVVMMLVICYVLTQVFR 930
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
VSSSTWLS WTD + KTHGPLFYN +Y+LLSFGQV VTL NSYWLI+SSLYAAK++HDA
Sbjct: 931 VSSSTWLSEWTDSGTPKTHGPLFYNIVYALLSFGQVSVTLINSYWLIMSSLYAAKKMHDA 990
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML SILRAPMVFF TNPLGRIINRFAKD+GDIDR VAVFVNMFMG ++QLLST +LIGIV
Sbjct: 991 MLGSILRAPMVFFQTNPLGRIINRFAKDMGDIDRTVAVFVNMFMGSIAQLLSTVILIGIV 1050
Query: 601 STMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMP Q+T+RE+KR+DS TRSPVYAQFGEALNGLS+IRAYKAY
Sbjct: 1051 STLSLWAIMPLLVVFYGAYLYYQNTSREIKRMDSTTRSPVYAQFGEALNGLSSIRAYKAY 1110
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA+ING+SMD NIR+TLVNM ANRWL IRLE++GGLM+WLTA+ AV+QNG A NQ+A+
Sbjct: 1111 DRMAEINGRSMDNNIRFTLVNMAANRWLGIRLEVLGGLMVWLTASLAVMQNGKAANQQAY 1170
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSYAL+ITS LTAVLRLASLAENSLN+VERVGNYIE+PSEAPLVIE+NRPPPG
Sbjct: 1171 ASTMGLLLSYALSITSSLTAVLRLASLAENSLNSVERVGNYIEIPSEAPLVIENNRPPPG 1230
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPSSGSIKFEDVVLRYRPELPPVLHG+SF I P DKVGIVGRTGAGKSS+LN LFRIVEL
Sbjct: 1231 WPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGAGKSSLLNALFRIVEL 1290
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E+GRILID DI +FGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPFSEH+DADLWE+LERA
Sbjct: 1291 EKGRILIDECDIGRFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFSEHNDADLWESLERA 1350
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 960
HLKD IRRN LGLDA+V+EAGENFSVGQRQ KILVLDEATAAVDVRTD
Sbjct: 1351 HLKDTIRRNPLGLDAEVTEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDV 1410
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQKTIREEFKSCTMLIIAHRLNTIIDCD++L+LDSG+V E+ +PE LLSN SSFSKMV
Sbjct: 1411 LIQKTIREEFKSCTMLIIAHRLNTIIDCDKVLVLDSGKVQEFSSPENLLSNGESSFSKMV 1470
Query: 1021 QSTGAANAQYLRSLVLGGEAENKLREENKQ-IDGXXXXXXXXXXXXXXXXXXXVSLTSSH 1079
QSTG ANA+YLRS+ L + + ++ Q ++G VSLTSSH
Sbjct: 1471 QSTGTANAEYLRSITLENKRTREANGDDSQPLEGQRKWQASSRWAAAAQFALAVSLTSSH 1530
Query: 1080 NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIE 1139
NDLQ LE+ED N+ILKKTKDAVVTL+ VLEGKHDKEIE+SLNQ ++S + WW +LY+M+E
Sbjct: 1531 NDLQSLEIEDDNSILKKTKDAVVTLRSVLEGKHDKEIEDSLNQSDISRERWWPSLYKMVE 1590
Query: 1140 GLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
GL+VMSRLARNR+ DY+LE +S DWD+VEM
Sbjct: 1591 GLAVMSRLARNRMQHPDYNLEGKSFDWDNVEM 1622
|
|
| TAIR|locus:2028155 ABCC11 "ATP-binding cassette C11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3725 (1316.3 bits), Expect = 0., P = 0.
Identities = 731/1035 (70%), Positives = 847/1035 (81%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P QT I+ +M+KLTKEGLQ TDKR+G++ EILA+MD VKCYAWE SF+S++Q +RN+E
Sbjct: 453 LIPFQTLIVRKMRKLTKEGLQWTDKRVGIIYEILASMDIVKCYAWEKSFESRIQGIRNEE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A NSFILNS PV+VT+VSFG++ LLGGDLTPARAFTSLSLFAVLR PL
Sbjct: 513 LSWFRKAQLLSAFNSFILNSTPVVVTLVSFGVYVLLGGDLTPARAFTSLSLFAVLRSPLS 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
LPN+I+Q VNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PT
Sbjct: 573 TLPNLISQAVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L +INL+IPVGSLVAIVGGTGEGKTSLISAMLGEL +S IRG+VAYVPQVSWIFN
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVDIRGSVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
AT+R+NILFGS FE RY +AIDVT+LQHDLDL PG D TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATLRENILFGSDFESERYWRAIDVTALQHDLDLFPGRDRTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSD++IFDDP SALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV
Sbjct: 753 RAVYSNSDIYIFDDPFSALDAHVAHQVFDSCVKHELKGKTRVLVTNQLHFLPLMDRIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
EGM+KEEG F +LS +G LF+KLMENAGKM+ E + E + +K V
Sbjct: 813 SEGMIKEEGNFAELSKSGTLFKKLMENAGKMDATQEVNTNDENI-SKLGPTVTIDVSE-- 869
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLR 480
+ ++ K G+S+L+KQEERETG++S+ V+ RY A CY TE LR
Sbjct: 870 -RSLGSIQQGKWGRSMLVKQEERETGIISWDVVMRYNKAVGGLWVVMILLVCYLTTEVLR 928
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
V SSTWLS WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDA
Sbjct: 929 VLSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDA 988
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML+SILRAPM+FF TNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIGIV
Sbjct: 989 MLNSILRAPMLFFETNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGIV 1048
Query: 601 STMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMP QST+REV+RLDS+TRSP+YA FGEALNGLS+IRAYKAY
Sbjct: 1049 STISLWAIMPLLILFYATYIYYQSTSREVRRLDSVTRSPIYALFGEALNGLSSIRAYKAY 1108
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA INGKSMD NIR+TL + +NRWL IR E +GG+MIWLTATFAV++ G+AENQ F
Sbjct: 1109 DRMAKINGKSMDNNIRFTLASTSSNRWLTIRSESLGGVMIWLTATFAVLRYGNAENQAVF 1168
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP G
Sbjct: 1169 ASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSG 1228
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPS GSI+FEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN L+RIVEL
Sbjct: 1229 WPSRGSIQFEDVHLRYRPGLPPVLHGLSFFVYPSEKVGVVGRTGAGKSSMLNALYRIVEL 1288
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E+GRILID +D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERA
Sbjct: 1289 EKGRILIDDYDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDA 960
H+KD I RN GLDA+VSE GENFSVGQRQ KIL LDEATA+VDVRTD+
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILFLDEATASVDVRTDS 1408
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQ+TIREEFKSCTMLIIAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F KMV
Sbjct: 1409 LIQRTIREEFKSCTMLIIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFKMV 1468
Query: 1021 QSTGAANAQYLRSLV 1035
STG N QYL +LV
Sbjct: 1469 HSTGPENGQYLSNLV 1483
|
|
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1233 (439.1 bits), Expect = 6.2e-216, Sum P(2) = 6.2e-216
Identities = 266/600 (44%), Positives = 371/600 (61%)
Query: 431 KEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYW 490
K+G+ LI++E ETG V F V +Y A YF+ + + WLS W
Sbjct: 964 KKGQR-LIEKEMMETGRVKFSVYLQYLSAMGWWYVGFSFVF-YFIQNVAVIGQNLWLSDW 1021
Query: 491 TDQSSL---KTHGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544
TD S +T+ +T ++ L Q + + L S+ A++ LH ++L +
Sbjct: 1022 TDDSIEYFNQTYPNHIRDTRIGVFGALGLAQGFLVFFGTILLADGSISASRTLHTSLLTN 1081
Query: 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604
IL+ PM+FF T P GRI+NRFAKD+ +D + + ++ + +L T +I + + +
Sbjct: 1082 ILKVPMMFFDTTPSGRIVNRFAKDIFTVDEMIPMSFRSWILCLLGVLGTLFVICLATPIF 1141
Query: 605 LWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 664
++P +T+R+++RLDS++RSP+Y+ FGE ++GLS IRAY DR
Sbjct: 1142 TAVVVPMAVVYYFVQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGLSVIRAYGHQDRFL 1201
Query: 665 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTM 724
N ++D+N++ + +NRWLA+RLE +G L+++ A FAV+ S + +
Sbjct: 1202 KHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVISRDSLNS-----GLV 1256
Query: 725 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 784
GL +SYALN+T L ++R+ S E ++ AVERV Y E+ +EAP V S RPP WPS+
Sbjct: 1257 GLSISYALNVTQTLNWLVRMTSELETNIVAVERVREYAEIQNEAPWVT-SVRPPDDWPSA 1315
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G+I+FED +RYRPEL VLHG++ I ++K+GIVGRTGAGKSS+ N LFRIVE GR
Sbjct: 1316 GNIRFEDYKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGKSSLTNCLFRIVEAADGR 1375
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 904
ILID DIA GL DLR L IIPQ PVLFSGT+R NLDPF SDA++W LE AHLK+
Sbjct: 1376 ILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQTFSDAEIWSVLELAHLKE 1435
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQK 964
+R GL+ +VSE GEN S+GQRQ +IL+LDEATAAVD+ TD LIQ
Sbjct: 1436 YVRGLPTGLEHEVSEGGENLSLGQRQLLCLARALLRKSRILILDEATAAVDLETDDLIQS 1495
Query: 965 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024
TIR EF CT+L IAHRLNTI+D R+++LDSG+++E+D+P ELLS G FS M + G
Sbjct: 1496 TIRREFSHCTVLTIAHRLNTILDSSRVMVLDSGKIVEFDSPNELLSKPGH-FSSMAEDAG 1554
|
|
| UNIPROTKB|Q28689 ABCC2 "Canalicular multispecific organic anion transporter 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 1186 (422.6 bits), Expect = 8.3e-212, Sum P(2) = 8.3e-212
Identities = 278/706 (39%), Positives = 396/706 (56%)
Query: 336 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVK-EEGTFEDLSNNGELFQKLMENAGKMEEY 394
L K V N F+ D EG V +G+ ED ++ L + E
Sbjct: 846 LLAKKGVFAKNLKMFVKHTDS-----EGEVTVNDGSEEDDDDDSGLISSIEEFPEDSISL 900
Query: 395 VEEKEDG--ETVD--NKTSKPAANGVDNDLPKEASDTRKTKE---GKSVLIKQEERETGV 447
++E+ T+ +++S + N L + T K +E G+ LIK+E ETG
Sbjct: 901 TLKRENSLHRTLSRSSRSSGRRLKSLKNSLKAQNGKTPKEEEVVKGQK-LIKKEFMETGK 959
Query: 448 VSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSLK--THGPLFYN 505
V F + +Y A Y L + S+ WLS WT S+ T+ P
Sbjct: 960 VKFSIYLKYLQAIGWCSIVGIIFA-YVLNSVAFIGSNLWLSAWTSDSNTYNGTNYPASQR 1018
Query: 506 T----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561
I+ +L Q L L S+W +A+ LH +L++ILRAPM FF+T P+GRI
Sbjct: 1019 DLRIGIFGVLGLAQGLTVLVASFWSASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRI 1078
Query: 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXX 621
+NRFA D+ +D + + +M ++ST ++I + + + I+P
Sbjct: 1079 VNRFAGDISTVDDTLPQSLRSWMMCFLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVF 1138
Query: 622 XQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 681
+T+R+++RLDS+TRSP+Y+ F E ++GL IRA++ R N +D N +
Sbjct: 1139 YVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSW 1198
Query: 682 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 741
+ +NRWLA RLE+VG L+++ +A V+ + +G +LS ALNIT L +
Sbjct: 1199 ITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLSGD-----VVGFVLSNALNITQTLNWL 1253
Query: 742 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801
+R+ S E ++ AVER+ YI++ +EAP V + RPP GWP G I+F + +RYRPEL
Sbjct: 1254 VRMTSETETNIVAVERITEYIKVENEAPWVTDK-RPPAGWPHKGEIQFSNYQVRYRPELD 1312
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
VL G++ I +K+G+VGRTGAGKSS+ N LFRI+E G I IDG DIA GL DLR
Sbjct: 1313 LVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGHITIDGIDIASIGLHDLR 1372
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
L IIPQ PVLFSG++R NLDPF+ +SD ++W ALE AHLK + GL +VSEA
Sbjct: 1373 GKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAHLKSFVAGLQHGLSREVSEAE 1432
Query: 922 ENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 981
+N S+GQRQ KILVLDEATAAVD+ TD LIQ TIR EF CT++ IAHR
Sbjct: 1433 DNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHR 1492
Query: 982 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1027
L+TI+D D+I++LD+G ++EY +PEELL + G FS M + +G N
Sbjct: 1493 LHTIMDSDKIMVLDNGNIVEYGSPEELLESAGP-FSLMAKESGIEN 1537
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1178 (419.7 bits), Expect = 1.2e-208, Sum P(2) = 1.2e-208
Identities = 254/600 (42%), Positives = 363/600 (60%)
Query: 437 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 496
LIK+E ETG V F + +Y A Y L + ++ WLS WT S
Sbjct: 949 LIKKEFVETGKVKFSIYLKYLQAVGWWSLLFIVIF-YVLNYVAFIGTNLWLSAWTSDSEK 1007
Query: 497 KT---HGPLFYNT---IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 550
+ + P + ++ L Q + L++S W I + A+K LH +L +ILRAPM
Sbjct: 1008 QNGTDNSPSQRDMRIGVFGALGIAQGIFLLSSSLWSIYACRNASKTLHRQLLTNILRAPM 1067
Query: 551 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 610
FF T P GRI+NRFA D+ +D + + ++ ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPTGRIVNRFAGDISTVDDTLPQTLRSWLLCFFGIVSTLVMICMATPIFIIIIIP 1127
Query: 611 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 670
+T+R+++RLDS+T+SP+Y+ F E ++GL IRA++ R + K
Sbjct: 1128 LSILYVSVQVFYVATSRQLRRLDSVTKSPIYSHFSETVSGLPVIRAFEHQQRFLANSEKQ 1187
Query: 671 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 730
+D N + + +NRWLAIRLE+VG L+++ +A V+ S T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAIRLELVGNLIVFCSALLLVIYKNSLTGD-----TVGFVLSN 1242
Query: 731 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 790
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + +PP WP G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDK-KPPADWPKKGEIQFN 1301
Query: 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 850
+ +RYRPEL VL G++ I ++KVG+VGRTGAGKSS+ N LFRI+E G+I+IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGI 1361
Query: 851 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 910
DIA GL DLR L IIPQ P+LFSG +R NLDPF+++SD ++W ALE AHLK +
Sbjct: 1362 DIASIGLHDLRGRLTIIPQDPILFSGNLRMNLDPFNKYSDEEIWRALELAHLKSFVAGLQ 1421
Query: 911 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 970
LGL +V+E G+N S+GQRQ KILVLDEATAAVD+ TD+LIQ TIR EF
Sbjct: 1422 LGLLHEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRNEF 1481
Query: 971 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQY 1030
CT++ IAHRL+TI+D D+I++LDSG+++EY +PEELLSN G F M + G + +
Sbjct: 1482 SQCTVITIAHRLHTIMDSDKIMVLDSGKIVEYGSPEELLSNMGP-FYLMAKEAGIESVNH 1540
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.2e-208, Sum P(2) = 1.2e-208
Identities = 258/621 (41%), Positives = 374/621 (60%)
Query: 418 NDLPKEASDTRKTKE----GKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCY 473
N L +T K +E G+ LIK+E +TG V F + +Y A Y
Sbjct: 928 NSLKTRNVNTLKEEEEPVKGQK-LIKKEFIQTGKVKFSIYLKYLRAIGWYLIFLIIFA-Y 985
Query: 474 FLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQ-VLVTLANSYWL 526
+ + S+ WLS WT+ S T+ P +Y +L Q V V +AN
Sbjct: 986 VINSVAYIGSNLWLSAWTNDSKAFNGTNYPASQRDMRIGVYGVLGLAQGVFVLMANLL-S 1044
Query: 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 586
S +A+ LH +L++IL+APM FF T P GRI+NRFA D+ +D + + ++
Sbjct: 1045 AHGSTHASNILHRQLLNNILQAPMSFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWILC 1104
Query: 587 VSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGE 646
++ST V+I + + + I+P +T+R++KRLDS+TRSP+Y+ F E
Sbjct: 1105 FLGIISTLVMICTATPVFIIVIIPLSIIYVSIQIFYVATSRQLKRLDSVTRSPIYSHFSE 1164
Query: 647 ALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATF 706
++GLS IRA++ R N +D N + + +NRWLA+RLE++G L+++ ++
Sbjct: 1165 TVSGLSVIRAFEHQQRFLKHNEVGIDTNQKCVFSWIVSNRWLAVRLELIGNLIVFFSSLM 1224
Query: 707 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI++ +
Sbjct: 1225 MVIYKATLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIKVEN 1279
Query: 767 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 826
EAP V + RPPPGWPS G I+F + +RYRPEL VL G++ I +K+G+VGRTGAG
Sbjct: 1280 EAPWVTDK-RPPPGWPSKGEIRFNNYQVRYRPELDLVLRGITCDIRSMEKIGVVGRTGAG 1338
Query: 827 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 886
KSS+ N LFRI+E G+I+IDG DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+
Sbjct: 1339 KSSLTNGLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFN 1398
Query: 887 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILV 946
+SD ++W+ALE AHLK + LGL +V+EAG+N S+GQRQ KIL+
Sbjct: 1399 HYSDEEIWKALELAHLKTFVAGLQLGLSHEVAEAGDNLSIGQRQLLCLARALLRKSKILI 1458
Query: 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPE 1006
+DEATAAVD+ TD LIQ TI++EF CT + IAHRL+TI+D D+I++LD+G+++EY +P+
Sbjct: 1459 MDEATAAVDLETDHLIQMTIQKEFSHCTTITIAHRLHTIMDSDKIIVLDNGKIVEYGSPQ 1518
Query: 1007 ELLSNEGSSFSKMVQSTGAAN 1027
ELL N G F M + G N
Sbjct: 1519 ELLRNSGP-FYLMAKEAGIEN 1538
|
|
| UNIPROTKB|F1S8V9 ABCC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 6.8e-208, Sum P(2) = 6.8e-208
Identities = 262/682 (38%), Positives = 390/682 (57%)
Query: 360 VHEGMVKEEGTF-EDLSNNG-ELFQKLMENAGKMEEYVEEKEDGETVD--NKTSKPAANG 415
V E ++E T ED + EL + EN E +T+ +++S
Sbjct: 865 VKEAGPEDEATVNEDSEEDACELMPSVEENPEDAASLKRENSLRQTLSRSSRSSSRRLKS 924
Query: 416 VDNDLPKEASDTRKTKEGKSV----LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXX 471
+ + L + K +E + V LIK+E +TG V F + +Y A
Sbjct: 925 LKDSLKTRKGNILKEEETEPVKGQKLIKKEFLQTGKVKFSIYLKYLQAIGWCSIVFIVLG 984
Query: 472 CYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNT----IYSLLSFGQVLVTLANSYW 525
+ L + S+ WLS WT S + T+ P ++ L Q + L +
Sbjct: 985 -FMLYSVAFIGSNLWLSAWTGDSKIYNSTNYPTSQRDLRVGVFGALGLAQGIFVLIATLC 1043
Query: 526 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMG 585
+ +A+ LH +L +ILRAPM FF T P+GRI+NRFA D+ +D + + + ++
Sbjct: 1044 SVYGCTHASSILHTQLLSNILRAPMSFFDTTPIGRIVNRFAGDISTLDDTLPMSLRSWLM 1103
Query: 586 QVSQLLSTFVLIGIVSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFG 645
++ST V+I + + + + I+P +T+R+++RLDS+TRSP+Y+ F
Sbjct: 1104 CFLGIISTLVMICLATPVFVIIIIPLGIIYVAVQIFYVATSRQLRRLDSVTRSPIYSHFS 1163
Query: 646 EALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTAT 705
E ++GL IRA++ R N ++D N + + +NRWLA+RLE +G ++++ ++
Sbjct: 1164 ETVSGLPVIRAFEHQQRFLKHNEITIDTNQKCVFSWIISNRWLAVRLEFIGNMIVFCSSL 1223
Query: 706 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765
V+ + T+G +LS ALNIT L ++R+ S E ++ AVER+ YI +
Sbjct: 1224 MMVIYRNTLSGD-----TVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERINEYIHVE 1278
Query: 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 825
+EAP V + RPP GWPS G I+F + +RYRPEL VL G++ I ++K+G+VGRTGA
Sbjct: 1279 NEAPWVTDK-RPPDGWPSKGEIQFSNYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGA 1337
Query: 826 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 885
GKSS+ N+LFRI+E G+I IDG DIA GL DLR+ L IIPQ P+LFSGT+R NLDPF
Sbjct: 1338 GKSSLTNSLFRILEAAGGQITIDGVDIASIGLHDLREKLTIIPQDPILFSGTLRMNLDPF 1397
Query: 886 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKIL 945
+ +SD +LW+ALE AHLK + LGL +V+E G+N S+GQRQ KIL
Sbjct: 1398 NSYSDEELWKALELAHLKSFVSHLQLGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKIL 1457
Query: 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005
++DEATAAVD+ TD LIQ TI+ EF CT + IAHRL+TI+D D++++LD+G +++YD+P
Sbjct: 1458 IMDEATAAVDLETDHLIQTTIQTEFSHCTTITIAHRLHTIMDSDKVMVLDNGNIVQYDSP 1517
Query: 1006 EELLSNEGSSFSKMVQSTGAAN 1027
EELL G F M Q G N
Sbjct: 1518 EELLKTPGP-FYYMAQEAGIEN 1538
|
|
| RGD|2366 Abcc2 "ATP-binding cassette, subfamily C (CFTR/MRP), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1180 (420.4 bits), Expect = 2.6e-206, Sum P(2) = 2.6e-206
Identities = 257/611 (42%), Positives = 368/611 (60%)
Query: 426 DTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSST 485
+ K EG+ LIK+E ETG V F + +Y A Y L + S+
Sbjct: 937 EKEKEVEGQK-LIKKEFVETGKVKFSIYLKYLQAVGWWSILFIILF-YGLNNVAFIGSNL 994
Query: 486 WLSYWT-DQSSLK-THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539
WLS WT D +L T+ + ++ L Q + L ++ W I + A+K LH
Sbjct: 995 WLSAWTSDSDNLNGTNNSSSHRDMRIGVFGALGLAQGICLLISTLWSIYACRNASKALHG 1054
Query: 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI 599
+L +ILRAPM FF T P GRI+NRF+ D+ +D + + +M + T V+I +
Sbjct: 1055 QLLTNILRAPMRFFDTTPTGRIVNRFSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICM 1114
Query: 600 VSTMSLWAIMPXXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 659
+ + I+P +T+R+++RLDS+T+SP+Y+ F E + GL IRA++
Sbjct: 1115 ATPVFAIIIIPLSILYISVQVFYVATSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEH 1174
Query: 660 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEA 719
R N K +D N + + +NRWLAIRLE+VG L+++ +A V+ +
Sbjct: 1175 QQRFLAWNEKQIDINQKCVFSWITSNRWLAIRLELVGNLVVFCSALLLVIYRKTLTGD-- 1232
Query: 720 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779
+G +LS ALNIT L ++R+ S AE ++ AVER+ YI + +EAP V + RPP
Sbjct: 1233 ---VVGFVLSNALNITQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTDK-RPPA 1288
Query: 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
WP G I+F + +RYRPEL VL G++ I +KVG+VGRTGAGKSS+ N LFRI+E
Sbjct: 1289 DWPRHGEIQFNNYQVRYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILE 1348
Query: 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 899
G+I+IDG D+A GL DLR+ L IIPQ P+LFSG++R NLDPF+++SD ++W ALE
Sbjct: 1349 SAGGQIIIDGIDVASIGLHDLRERLTIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALEL 1408
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTD 959
AHL+ + LGL ++V+E G+N S+GQRQ KILVLDEATAAVD+ TD
Sbjct: 1409 AHLRSFVSGLQLGLLSEVTEGGDNLSIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETD 1468
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
+LIQ TIR+EF CT++ IAHRL+TI+D D+I++LD+G+++EY +PEELLSN GS F M
Sbjct: 1469 SLIQTTIRKEFSQCTVITIAHRLHTIMDSDKIMVLDNGKIVEYGSPEELLSNRGS-FYLM 1527
Query: 1020 VQSTGAANAQY 1030
+ G N +
Sbjct: 1528 AKEAGIENVNH 1538
|
|
| UNIPROTKB|F1MIP7 ABCC2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1168 (416.2 bits), Expect = 5.4e-206, Sum P(2) = 5.4e-206
Identities = 247/597 (41%), Positives = 360/597 (60%)
Query: 437 LIKQEERETGVVSFKVLSRYKDAXXXXXXXXXXXXCYFLTETLRVSSSTWLSYWTDQSSL 496
LIK+E +TG V F + +Y A + + + S+ WLS WT S +
Sbjct: 949 LIKKEFVQTGKVKFSIYLKYLQAIGWCSIVFILLG-FVIYYVAFIGSNLWLSAWTSDSKI 1007
Query: 497 K--THGPLFYNT----IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 550
T+ P +Y L Q L + W + +A+ LH +L++ILRAPM
Sbjct: 1008 YNGTNYPSSQRDLRVGVYGALGVAQGLFVFIANIWSVYGCNHASNILHKQLLNNILRAPM 1067
Query: 551 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP 610
FF T P+GRI+NRFA DL +D + + + + ++ST V+I + + + + I+P
Sbjct: 1068 SFFDTTPIGRIVNRFAGDLFTVDDTLPMSLRSCVLCFLGIISTLVMICLATPIFVVVIIP 1127
Query: 611 XXXXXXXXXXXXQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 670
+T+R+++RLDS+TRSP+Y+ F E ++GLS IRA++ R + +
Sbjct: 1128 LGIIYVSVQIFYVATSRQLRRLDSVTRSPIYSHFSETVSGLSVIRAFEHQQRFLKQSETA 1187
Query: 671 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 730
+D N + + +NRWLA+RLE++G L+++ + V+ + T+G +LS
Sbjct: 1188 IDTNQKCVFSWITSNRWLAVRLELIGNLIVFFASLMMVIYRNNLSGD-----TVGFVLSN 1242
Query: 731 ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 790
ALNIT L ++R+ S E ++ AVER+ YI + +EAP V + RPP GWPS G I+F
Sbjct: 1243 ALNITQTLNWLVRMTSEIETNIVAVERITEYINVENEAPWVTDK-RPPEGWPSKGEIQFS 1301
Query: 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 850
+ +RYRPEL VL G++ I ++K+G+VGRTGAGKSS+ N LFRI+E G+I IDG
Sbjct: 1302 NYQVRYRPELDLVLKGITCDIKSTEKIGVVGRTGAGKSSLTNCLFRILEAAGGQITIDGV 1361
Query: 851 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 910
DIA GL DLR+ L IIPQ P+LFSG++R NLDPF+ +SD ++W+ALE +HLK +
Sbjct: 1362 DIASIGLHDLREKLTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELSHLKSFVAGLQ 1421
Query: 911 LGLDAQVSEAGENFSVGQRQXXXXXXXXXXXXKILVLDEATAAVDVRTDALIQKTIREEF 970
GL +V+E G+N S+GQRQ KIL++DEATAAVD+ TD LIQ TI+ EF
Sbjct: 1422 AGLSYEVTEGGDNLSIGQRQLLCLARALLRKSKILIMDEATAAVDLETDQLIQTTIQTEF 1481
Query: 971 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1027
CT + IAHRL+TI+D D++++LDSG+++EYD+PEELL N G F M Q G N
Sbjct: 1482 SHCTTITIAHRLHTIMDSDKVMVLDSGKIVEYDSPEELLKNPGP-FYFMAQEAGIEN 1537
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q42093 | AB2C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.8163 | 0.9965 | 0.7190 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1171 | |||
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.0 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-129 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-103 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-97 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-79 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-78 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-76 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-74 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-64 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-64 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-63 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-59 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-57 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-56 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-56 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-56 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 8e-56 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-55 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-55 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-55 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-55 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-53 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-53 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-52 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-52 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 7e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-51 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-51 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-50 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-50 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-49 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-49 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-46 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-46 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-44 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-43 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-42 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-41 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-41 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-40 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-40 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-39 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-39 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-39 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-38 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-38 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-38 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-38 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 9e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-35 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-34 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-34 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-33 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-33 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-33 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 7e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-31 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-31 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 8e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-30 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-30 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-30 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-30 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-30 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-29 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-28 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-28 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-28 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-28 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-27 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-27 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-26 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-26 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-25 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-25 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-25 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-25 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-25 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 4e-25 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-25 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-24 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-24 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-24 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-24 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-24 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-24 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-23 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-23 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-23 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-23 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-23 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-23 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-23 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-22 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-22 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-22 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-22 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-22 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-21 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-21 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-21 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-20 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-20 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-20 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-20 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 8e-20 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 9e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-19 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-19 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-19 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-19 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-19 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-19 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-19 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-19 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-18 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-18 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-18 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-18 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-18 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-17 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-17 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-17 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-16 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 5e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-16 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-16 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-16 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 9e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-15 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-15 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-15 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-15 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-15 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-15 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-15 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-15 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 8e-15 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-15 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-14 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-14 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-14 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-14 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-14 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-14 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-14 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 7e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 8e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-14 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-13 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-13 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-13 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-13 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-13 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-13 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-13 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-13 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 9e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-13 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-12 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-12 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 4e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-12 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-12 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-12 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 7e-12 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-12 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 8e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-12 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-12 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-11 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-11 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-11 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-11 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 4e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-11 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-11 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 6e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-11 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 8e-11 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 8e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-11 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-10 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-10 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-10 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-10 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-10 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-10 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-09 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-09 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-09 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 6e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-09 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-08 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-08 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 4e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 5e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 7e-08 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-08 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 8e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 9e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 9e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-06 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-06 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-05 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 6e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 8e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 9e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-04 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 6e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-04 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 9e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.001 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.002 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 0.002 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.003 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 0.004 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.004 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 2466 bits (6393), Expect = 0.0
Identities = 1016/1171 (86%), Positives = 1098/1171 (93%), Gaps = 1/1171 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
MFP+QTFIIS+MQKLTKEGLQRTDKRIGLMNE+LAAMD VKCYAWENSFQSKVQ VR+DE
Sbjct: 453 MFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A NSFILNSIPVLVTVVSFG+FTLLGGDLTPARAFTSLSLFAVLRFPLF
Sbjct: 513 LSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLF 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+ITQ VNANVSLKR+EE LLAEE++LLPNPPL GLPAISI+NGYFSWDSKAERPT
Sbjct: 573 MLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NINLD+PVGSLVAIVG TGEGKTSLISAMLGELPP SDAS VIRGTVAYVPQVSWIFN
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVRDNILFGS F+P RYE+AIDVT+LQHDLDLLPGGD+TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSDV+IFDDPLSALDAHVGRQVFD+CI+ EL GKTRVLVTNQLHFLSQVDRIILV
Sbjct: 753 RAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
HEGM+KEEGT+E+LSNNG LFQKLMENAGKMEEYVEE E D +SKP ANG N+L
Sbjct: 813 HEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEE-NGEEEDDQTSSKPVANGNANNL 871
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLR 480
K++S +K+KEGKSVLIKQEERETGVVS+KVL RYK+ALGG WVV+IL LCY LTE R
Sbjct: 872 KKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFR 931
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
VSSSTWLS WTDQ + KTHGPLFYN IY+LLSFGQVLVTL NSYWLI+SSLYAAKRLHDA
Sbjct: 932 VSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDA 991
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML SILRAPM FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF+GQ+ QLLSTFVLIGIV
Sbjct: 992 MLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIV 1051
Query: 601 STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMPLL+LFY AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY
Sbjct: 1052 STISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 1111
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA+ING+SMD NIR+TLVNM +NRWLAIRLE +GGLMIWLTA+FAV+QNG AENQ AF
Sbjct: 1112 DRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAF 1171
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG YI+LPSEAPLVIE+NRPPPG
Sbjct: 1172 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPG 1231
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPSSGSIKFEDVVLRYRPELPPVLHGLSF I PS+KVGIVGRTGAGKSSMLN LFRIVEL
Sbjct: 1232 WPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL 1291
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
ERGRILIDG DI+KFGLMDLRK+LGIIPQ+PVLFSGTVRFNLDPF+EH+DADLWE+LERA
Sbjct: 1292 ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERA 1351
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
HLKD IRRNSLGLDA+VSEAGENFSVGQRQLLSL+RALLRRSKILVLDEATAAVDVRTDA
Sbjct: 1352 HLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL+LD+GRV+E+DTPE LLSNEGS+FSKMV
Sbjct: 1412 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMV 1471
Query: 1021 QSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHN 1080
QSTGAANAQYLRSLV GG+ + REE+K +DGQR+WLASSRWAAAAQ+ALAVSLTSS N
Sbjct: 1472 QSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQN 1531
Query: 1081 DLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLNQHEVSTDGWWSALYRMIEG 1140
DLQ LE+ED+N+IL+KTKDAV+TLQ VLEGKHDKEI+ESLNQ +V DGWWS+LYRM+EG
Sbjct: 1532 DLQSLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLNQRQVPRDGWWSSLYRMVEG 1591
Query: 1141 LSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171
L+VMSRLARNR+ QSD++ E +SIDWD+VEM
Sbjct: 1592 LAVMSRLARNRMQQSDHNFEGKSIDWDNVEM 1622
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 1785 bits (4624), Expect = 0.0
Identities = 780/1036 (75%), Positives = 899/1036 (86%), Gaps = 4/1036 (0%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ P+QT I+ +M+KLTKEGLQ TDKR+G++NEILA+MD VKCYAWE SF+S++Q +RN+E
Sbjct: 453 LIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEE 512
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
LSWFRKAQ L+A NSFILNSIPV+VT+VSFG+F LLGGDLTPARAFTSLSLFAVLR PL
Sbjct: 513 LSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLN 572
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
MLPN+++QVVNANVSL+R+EE LL+EE+IL NPPL G PAISI+NGYFSWDSK +PT
Sbjct: 573 MLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPT 632
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L +INL+IPVGSLVAIVGGTGEGKTSLISAMLGEL +S VIRG+VAYVPQVSWIFN
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVR+NILFGS FE RY +AIDVT+LQHDLDLLPG D+TEIGERGVNISGGQKQRVSMA
Sbjct: 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVYSNSD++IFDDPLSALDAHV QVFD C++ EL GKTRVLVTNQLHFL +DRIILV
Sbjct: 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILV 812
Query: 361 HEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDL 420
EGM+KEEGTF +LS +G LF+KLMENAGKM+ E + E + + V
Sbjct: 813 SEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTID-VSE-- 869
Query: 421 PKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLR 480
+ T++ K G+SVL+KQEERETG++S+ VL RY A+GGLWVV+ILL+CY TE LR
Sbjct: 870 -RNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLR 928
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDA 540
VSSSTWLS WTDQS+ K++ P FY +Y+LL FGQV VT NS+WLI SSL+AAKRLHDA
Sbjct: 929 VSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDA 988
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
ML+SILRAPM+FFHTNP GR+INRF+KD+GDIDRNVA +NMFM Q+ QLLSTF LIG V
Sbjct: 989 MLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTV 1048
Query: 601 STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY 660
ST+SLWAIMPLL+LFYAAYLYYQST+REV+RLDS+TRSP+YAQFGEALNGLS+IRAYKAY
Sbjct: 1049 STISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAY 1108
Query: 661 DRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720
DRMA INGKSMD NIR+TL N +NRWL IRLE +GG+MIWLTATFAV++NG+AENQ F
Sbjct: 1109 DRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGF 1168
Query: 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780
ASTMGLLLSY LNIT+LL+ VLR AS AENSLN+VERVGNYI+LPSEA +IE+NRP G
Sbjct: 1169 ASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSG 1228
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WPS GSIKFEDV LRYRP LPPVLHGLSF + PS+KVG+VGRTGAGKSSMLN LFRIVEL
Sbjct: 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E+GRI+ID D+AKFGL DLR++L IIPQSPVLFSGTVRFN+DPFSEH+DADLWEALERA
Sbjct: 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
H+KD I RN GLDA+VSE GENFSVGQRQLLSL+RALLRRSKILVLDEATA+VDVRTD+
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
LIQ+TIREEFKSCTML+IAHRLNTIIDCD+IL+L SG+VLEYD+P+ELLS + S+F +MV
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 1021 QSTGAANAQYLRSLVL 1036
STG ANAQYL +LV
Sbjct: 1469 HSTGPANAQYLSNLVF 1484
|
Length = 1495 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 874 bits (2259), Expect = 0.0
Identities = 427/1063 (40%), Positives = 635/1063 (59%), Gaps = 50/1063 (4%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
M P+ + + + ++ D RI LMNEIL + +K YAWE +F KV+ +R +E
Sbjct: 470 MVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEE 529
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGD--LTPARAFTSLSLFAVLRFP 118
L +K+ +L A +F P LV +++F ++ + + L +AF SL+LF +LRFP
Sbjct: 530 LKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFP 589
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP----PLTSGLP-AISIRNGYFSWD 173
L +LP +I+ +V A+VSLKR+ FL EE L P+ + G +I++ N F+W
Sbjct: 590 LNILPMVISSIVQASVSLKRLRIFLSHEE--LEPDSIERRTIKPGEGNSITVHNATFTW- 646
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 233
++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V + ++G+VAYVP
Sbjct: 647 ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV-EGHVHMKGSVAYVP 705
Query: 234 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293
Q +WI N ++R+NILFG A Y++ ++ +L DL++LP GD TEIGE+GVN+SGGQ
Sbjct: 706 QQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 765
Query: 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGKTRVLVTNQLHFL 351
KQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I G L KTR+LVT+ + +L
Sbjct: 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL 825
Query: 352 SQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG---ETVDNKT 408
QVD II++ G + E G++++L F + + E+ ++ + + K
Sbjct: 826 PQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKE 885
Query: 409 SKPAANG------VDNDLPKEASDTRKTKEGKS-------------------VLIKQEER 443
+K NG V L ++ S + +S L++ ++
Sbjct: 886 AKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKA 945
Query: 444 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGP 501
+TG V V Y A+G L++ + + + ++S+ WLS WTD + +
Sbjct: 946 QTGQVELSVYWDYMKAIG-LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNT 1004
Query: 502 LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561
++Y L Q S + I + A++ LH +LH+ LR+PM FF P G +
Sbjct: 1005 SLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNL 1064
Query: 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621
+NRF+K+L +D + + MFMG + ++ ++I + + ++ I PL LL++ +
Sbjct: 1065 VNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRF 1124
Query: 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVN 681
Y +++R++KRL+S++RSPVY+ F E L G+S IRA++ +R + +D+N + +
Sbjct: 1125 YVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPS 1184
Query: 682 MGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 741
+ ANRWLA+RLE VG ++ A FAV+ S A +GL +SY+L +T L +
Sbjct: 1185 IVANRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWL 1239
Query: 742 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801
+R++S E ++ AVER+ Y E EAP I+ PP GWP G ++F + LRYR +L
Sbjct: 1240 VRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLD 1299
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
VL ++ TI +KVGIVGRTGAGKSS+ LFRI E G I+IDG +IAK GL DLR
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+ IIPQ PVLFSG++R NLDPFS++SD ++W ALE AHLK + LD + +E G
Sbjct: 1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 981
EN SVGQRQL+ L+RALLR++KILVLDEATAAVD+ TD LIQ TIR +F+ CT+L IAHR
Sbjct: 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHR 1479
Query: 982 LNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024
LNTI+D R+++LD G V E+ P LL G F M + G
Sbjct: 1480 LNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG-IFYSMAKDAG 1521
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 638 bits (1648), Expect = 0.0
Identities = 323/900 (35%), Positives = 493/900 (54%), Gaps = 58/900 (6%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L ++++ +P G L ++G TG GK++L+ ++L + +S+ ++AYVPQ +WI N
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAERSIAYVPQQAWIMN 734
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
ATVR NILF + AR A+ V+ L+ DL L GG TEIGE+GVN+SGGQK RVS+A
Sbjct: 735 ATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLA 794
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360
RAVY+N DV++ DDPLSALDAHVG +V + C G L+GKTRVL T+Q+H + + D ++ +
Sbjct: 795 RAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVAL 854
Query: 361 HEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEYVE-EKEDGETVDNKTSKPAANGV 416
+G V+ G+ D S L +L EN E + E + +
Sbjct: 855 GDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVA 914
Query: 417 DNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 476
+ E D L+ +EE+ +G V + Y GGL +L + +T
Sbjct: 915 KQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVT 974
Query: 477 ETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKR 536
E + VSS WLS W+ +S + Y + G VL+ + S A +R
Sbjct: 975 ELVTVSSGVWLSMWSTRSFKLS------AATYLYVYLGIVLLGTFSVPLRFFLSYEAMRR 1028
Query: 537 ----LHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLS 592
+H +L S+ R M FF T PLGRI+NRF++D+ +D + M + Q L
Sbjct: 1029 GSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNT----LPMSYLYLLQCLF 1084
Query: 593 TFVLIGIVSTMS----LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEAL 648
+ +V++ S L A++P L+Y +Y S RE++R+ S+ +SPV+ EAL
Sbjct: 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEAL 1144
Query: 649 NGLSTIRAYKAYDRMADINGKSMDK-NIRYTLVNM--GANRWLAIRLEIVGGLMIWLTAT 705
G +TI AY + + +++ + ++ Y+ + ANRWL +R+E + +++ + A
Sbjct: 1145 QGSATI---TAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIAL 1201
Query: 706 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI-EL 764
V+ + + L L+ A+ T+ L ++R + E +N+VER+ Y E+
Sbjct: 1202 IGVIGTMLRATSQEIG-LVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEV 1260
Query: 765 PSEA-----------------------PLVIESNRPPPGWP---SSGSIKFEDVVLRYRP 798
P E +VIE P P +GS+ FE V +RYR
Sbjct: 1261 PHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYRE 1320
Query: 799 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858
LP VL G+SF I P +KVGIVGRTG+GKS++L T R+VE+ G I ++G +I +GL
Sbjct: 1321 GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLR 1380
Query: 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918
+LR+ +IPQ PVLF GTVR N+DPF E S A++W ALE L++ + S G+D++V
Sbjct: 1381 ELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 919 EAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 977
E G N+SVGQRQL+ ++RALL++ S +++DEATA +D D IQ T+ F + T++
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 978 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLG 1037
IAHRL+T+ D+I+++D G V E +P EL+ N S F MV++ G + A+ LV
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRSEAKRFLQLVGR 1560
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 393 bits (1012), Expect = e-129
Identities = 152/221 (68%), Positives = 178/221 (80%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G I+F++V LRYRP LPPVL +SF+I P +KVGIVGRTG+GKSS+L LFR+VEL G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 904
ILIDG DI+K GL DLR + IIPQ PVLFSGT+R NLDPF E+SD +LW+ALER LK+
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ GLD V E GEN SVGQRQLL L+RALLR+SKILVLDEATA+VD TDALIQK
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 965 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005
TIRE FK CT+L IAHRL+TIID DRIL+LD GRV+E+D+P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 336 bits (864), Expect = e-103
Identities = 172/565 (30%), Positives = 280/565 (49%), Gaps = 13/565 (2%)
Query: 464 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 523
++L+ +L L+ L + + D L + LL+ ++ S
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 524 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 583
Y L + +LR P+ FF G +I+R D+ + V+ + +
Sbjct: 74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLV 133
Query: 584 MGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 642
+ L+ + VL+ +S ++L ++ L LL +R++ R + A
Sbjct: 134 FTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS-LLARKSRKLSRRVREALGELNA 192
Query: 643 QFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 702
+ E+L+G+ I+A+ A DR ++ ++ R L LA + ++ L L
Sbjct: 193 RLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVL 252
Query: 703 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 762
+ + + Y L + + + + + SL + + A ER+
Sbjct: 253 VLALGGFL---VLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERL---F 306
Query: 763 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 822
EL E P V + P + GSI+FE+V Y + PVL +SF+I P +KV IVG
Sbjct: 307 ELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGP 363
Query: 823 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 882
+G+GKS+++ L R+ + G ILIDG DI L LRK +GI+ Q P+LFSGT+R N+
Sbjct: 364 SGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423
Query: 883 DPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941
+ +D ++ EAL+ A+ + I G D V E G N S GQRQ L+++RALLR
Sbjct: 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483
Query: 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
IL+LDEAT+A+D T+ALIQ +++ K T LIIAHRL+TI + DRI++LD+GR++E
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 1002 YDTPEELLSNEGSSFSKMVQSTGAA 1026
T EELL+ G ++++ Q+ G A
Sbjct: 544 RGTHEELLAKGG-LYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 319 bits (821), Expect = e-102
Identities = 111/204 (54%), Positives = 153/204 (75%), Gaps = 4/204 (1%)
Query: 163 ISIRNGYFSWDSKAER--PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
IS+ + F+WDS + TL +INL++P G LVAIVG G GK+SL+SA+LGEL +S
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 221 ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
+ +V G++AYV Q WI N T+R+NILFG F+ RYEK I +L+ DL++LP GD+T
Sbjct: 61 SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 339
EIGE+G+N+SGGQKQR+S+ARAVYS++D+++ DDPLSA+DAHVGR +F+ CI G L K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 340 TRVLVTNQLHFLSQVDRIILVHEG 363
TR+LVT+QL L D+I+++ G
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 307 bits (789), Expect = 3e-97
Identities = 126/225 (56%), Positives = 158/225 (70%), Gaps = 18/225 (8%)
Query: 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
WP G I+ E++ +RY P+LPPVL +SF + +K+GIVGRTGAGKS+++ LFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
E G+I IDG DI+ L DLR L IIPQ P LFSGT+R NLDPF E+SD +++ AL
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
VSE G N S GQRQLL L+RALL+R ++LVLDEATA++D TDA
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005
LIQKTIREEF + T+L IAHRL TIID D+IL++D+G V EYD P
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 1e-79
Identities = 183/635 (28%), Positives = 317/635 (49%), Gaps = 48/635 (7%)
Query: 423 EASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVS 482
E S+ ++ K + E ++ RY L VLI L FL E
Sbjct: 826 EISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASL 885
Query: 483 SSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW----------------- 525
WL + + S V++T ++Y+
Sbjct: 886 LGLWLITDNPSAPNYVDQQ--HANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGF 943
Query: 526 -----LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFV 580
L+ + L +KRLH+ MLHS+L+APM +T GRI+NRF KD+ ID + + +
Sbjct: 944 FRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTL 1003
Query: 581 NMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPV 640
F+ +L ++ ++ A +P+ ++F Y+ T++++K+L+S RSP+
Sbjct: 1004 FDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPI 1063
Query: 641 YAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 700
++ +L GL TIRA+ + K+++ + + + RW +R++I+ +
Sbjct: 1064 FSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIF-VFF 1122
Query: 701 WLTATF-AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 759
++ TF A+ N E + +G++L+ A+NI S L + + + + +V RV
Sbjct: 1123 FIAVTFIAIGTNQDGEGE------VGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176
Query: 760 NYIELPSEAP--------------LVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 805
+I+LP E P LVIE+ WPS G + + + +Y VL
Sbjct: 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQ 1236
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865
LSF++ +VG++GRTG+GKS++L+ L R++ E G I IDG L RK G
Sbjct: 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFG 1295
Query: 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925
+IPQ +FSGT R NLDP+ + SD ++W+ E LK I + LD + + G S
Sbjct: 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS 1355
Query: 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985
G +QL+ L+R++L ++KIL+LDE +A +D T +I+KT+++ F +CT+++ HR+ +
Sbjct: 1356 NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEAL 1415
Query: 986 IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
++C + L+++ V +YD+ ++LL NE S F + +
Sbjct: 1416 LECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 273 bits (701), Expect = 1e-78
Identities = 149/523 (28%), Positives = 251/523 (47%), Gaps = 44/523 (8%)
Query: 510 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 569
L + + L+ L +Y + L +LR P+ +F +G II+R
Sbjct: 202 LAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV---- 257
Query: 570 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW------AIMPLL-LLFYAAYLYY 622
++++ + + LL + + ++ S A +PL L+
Sbjct: 258 RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317
Query: 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM----ADINGKSMDKNIRYT 678
+ R++ + + E + G+ T++A A R + K ++ +
Sbjct: 318 RRKTRKLIEESAEQ----QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 679 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE-------AFASTMGLLLSYA 731
+ + N ++ ++ L++W A + E AF G +S
Sbjct: 374 KLALILNTIKSLLQQLSSVLILWFGAILVL-------EGELTLGQLVAFNMLAGYFISPI 426
Query: 732 LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFED 791
++ L T + A+ER+G+ ++ P E G I+FE+
Sbjct: 427 TRLSQLWTDFQQA-------KVALERLGDILDTPPE---QEGDKTLIHLPKLQGEIEFEN 476
Query: 792 VVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 851
V RY P+ PPVL LS IPP +KV IVGR+G+GKS++L L + + ++GRIL+DG D
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 852 IAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNS 910
+ L LR+ +G + Q P LFSG++R N+ + +D ++ EA + A + I
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 970
+G D V E G N S GQRQ L+L+RALL + KIL+LDEAT+A+D T+A+I + + +
Sbjct: 597 MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL 656
Query: 971 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
+ T++IIAHRL+TI DRI++LD G+++E + EELL+ G
Sbjct: 657 QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGG 699
|
Length = 709 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 251 bits (642), Expect = 6e-76
Identities = 119/238 (50%), Positives = 165/238 (69%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G IK D+ +RY L PVL + I P KVGI GRTG+GKSS+ FR+V++ G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 904
I+IDG DI+K L LR L II Q P+LFSG++RFNLDP + +D LWEALE A LK+
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
++ GLDA V+E GENFSVGQRQL L+RA +R+S IL++DEATA++D+ T+ ++QK
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 965 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+ F T++ IAHR++TI+D D +L+L G ++E DTPE LL+ E F+ +V++
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 246 bits (630), Expect = 1e-74
Identities = 97/230 (42%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G I+FE+V Y + P VL ++F+I P + V IVG TGAGK++++N L R + ++G+
Sbjct: 1 GEIEFENVNFSYDEKKP-VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLW-EALERAHLK 903
ILIDG DI LR ++G++ Q LFSGT+ N+ ++ + EA + A
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
D I + G D + E G N S G+RQLL+++RA+LR KIL+LDEAT+ +D T+ LIQ
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 964 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
+ + + K T +IIAHRL+TI + D+IL+LD G+++E T +ELL+ +G
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 1e-64
Identities = 85/212 (40%), Positives = 117/212 (55%), Gaps = 41/212 (19%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+F++V Y PVL +S TI P +KV IVG +G+GKS++L L R+ + G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
IDG D+ L LRK + +PQ P LFSGT+R N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
S GQRQ ++++RALLR IL+LDEAT+A+D T+ALI + +
Sbjct: 97 -----------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 967 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 998
R K T+++IAHRL+TI D DRI++LD GR
Sbjct: 140 RALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 5e-64
Identities = 88/230 (38%), Positives = 142/230 (61%), Gaps = 5/230 (2%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++F++V RY + PPVL +S IP + V +VG +G+GKS+++N + R +++ GRIL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 903
IDG D+ + L LR+ +G++ Q LF+ TV N+ P + ++ EA A+
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRP--GATREEVEEAARAANAH 118
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
+ I G D + E G S GQRQ ++++RALL+ IL+LDEAT+A+D ++ L+Q
Sbjct: 119 EFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 964 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
+ K+ T +IAHRL+TI + DRI++L+ G+++E T EELL+ G
Sbjct: 179 AALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-63
Identities = 100/236 (42%), Positives = 152/236 (64%), Gaps = 7/236 (2%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+FE+V Y P P VL +SFTIP KV IVG +G+GKS++L LFR ++ G IL
Sbjct: 1 IEFENVTFAYDPGRP-VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLK 903
IDG DI + L LR+ +G++PQ VLF+ T+ +N+ P + +D ++ EA + A +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRP--DATDEEVIEAAKAAQIH 117
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
D I R G D V E G S G++Q ++++RA+L+ IL+LDEAT+A+D T+ IQ
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 964 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
+R+ K T ++IAHRL+TI++ D+I++L GR++E T EELL +G +++M
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 1e-59
Identities = 129/472 (27%), Positives = 211/472 (44%), Gaps = 52/472 (11%)
Query: 582 MFMGQVSQL-------LSTFVLIGIVSTMSLWAI--------------MPLLLLFYAAYL 620
+ + + QL L L IV + L AI PL+ LF +
Sbjct: 102 LALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL-V 160
Query: 621 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD-INGKSMD------K 673
+ K+ ++ R + F + L GL T+RA+ + + I S D
Sbjct: 161 GLAAKDASEKQFSALAR--LSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMS 218
Query: 674 NIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN 733
+R ++ LE L I L A + + + FA L+L+
Sbjct: 219 VLRIAFLSSAV-------LEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILA---- 267
Query: 734 ITSLLTAVLRLASL---AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 790
+ L S A A +++ +E P P + I E
Sbjct: 268 -PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG--SGEKAEVANEPPIEISLE 324
Query: 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 850
++ RY P+ P L L+ TI +VG +GAGKS++LN L + +G I ++G
Sbjct: 325 NLSFRY-PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGI 383
Query: 851 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRN 909
D+ RK + + Q+P LF+GT+R N+ + SD ++ AL++A L + + +
Sbjct: 384 DLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKP 443
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969
GLD + E G S GQ Q L+L+RALL + +L+LDE TA +D T+ +I + ++E
Sbjct: 444 -DGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 970 FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021
K T+L+I HRL D DRI++LD+GR++E T EEL +G ++ +++
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG-LYANLLK 553
|
Length = 559 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 7e-57
Identities = 98/220 (44%), Positives = 128/220 (58%), Gaps = 20/220 (9%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL------- 215
+ + NGYFSW S TL NIN+ IP G L IVG G GK+SL+ A+LGE+
Sbjct: 1 VQVTNGYFSWGSGL--ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 216 ---------PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 266
P + R +VAY Q W+ NATV +NI FGS F RY+ D S
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
LQ D+DLLP GD TEIGERG+N+SGGQ+QR+ +ARA+Y N+++ DDP SALD H+
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 327 VFDRCIRGELSG--KTRVLVTNQLHFLSQVDRIILVHEGM 364
+ I L +T VLVT++L +L D II + +G
Sbjct: 179 LMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 1e-56
Identities = 128/415 (30%), Positives = 213/415 (51%), Gaps = 39/415 (9%)
Query: 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSW 63
Q + +M + + +R+ + +EI+ + +VK Y WE + + ++N+R DEL
Sbjct: 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKL 296
Query: 64 FRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-ML 122
RK +L S V +S + L+ G + R FT++S VLR +
Sbjct: 297 TRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQF 355
Query: 123 PNMITQVVNANVSLKRMEEFLLAEE-KILLPNPPLTSGLPAISIRNGYFSWDS------- 174
P I ++ ++ ++++FL EE K L N LT+ + + N SWD
Sbjct: 356 PGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN--LTT--TEVEMVNVTASWDEGIGELFE 411
Query: 175 KAER------------------------PTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 210
K ++ P L NI+ + G L+A+ G TG GK+SL+
Sbjct: 412 KIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMM 471
Query: 211 MLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 270
++GEL P S+ G +++ PQ SWI T++DNI+FG +++ RY I L+ D
Sbjct: 472 IMGELEP-SEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED 530
Query: 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
+ L P D T +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P + LD +++F+
Sbjct: 531 IALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590
Query: 331 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385
C+ +S KTR+LVT++L L + D+I+L+HEG+ GTF +L F L+
Sbjct: 591 CLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 3e-56
Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 5/218 (2%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G I+F +V Y + P L +S TI +KV I+GR G+GKS++L L + + G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 901
+L+DG DI + DLR+ +G +PQ LF GT+R N+ P D + A E A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAG 118
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
+ D + ++ GLD Q+ E G S GQRQ ++L+RALL IL+LDE T+A+D+ ++
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999
+++ +R+ T++II HR + + DRI+++DSGR+
Sbjct: 179 LKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 5e-56
Identities = 137/507 (27%), Positives = 240/507 (47%), Gaps = 38/507 (7%)
Query: 523 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 582
+Y L S + + M +L P+ FF P G +++R D + + +
Sbjct: 75 TYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQV---ASAATDA 131
Query: 583 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYA 642
F+ V + L+ L ++ S W + ++++ KRL I++ +
Sbjct: 132 FIVLVRETLTVIGLFIVLLYYS-WQLTLIVVVMLPVLSILMRRVS--KRLRRISKEIQNS 188
Query: 643 Q------FGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG 696
E L G ++ + R+ V+ NR LA+++ G
Sbjct: 189 MGQVTTVAEETLQGYRVVKLFGGQAYETR----------RFDAVS-NRNRRLAMKMTSAG 237
Query: 697 GL---MIWLTATFAVVQNGSAENQEAFAS--TMGLLLSYALNITSLLTAVLRLASLA--- 748
+ + L A+ A+ +A A T G ++ + +L+ + L ++
Sbjct: 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 749 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLS 808
+ L A E + ++ P E R + G ++F +V RY P L +S
Sbjct: 298 QRGLAAAESLFTLLDSPPEKD---TGTRAIE--RARGDVEFRNVTFRYPGRDRPALDSIS 352
Query: 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 868
I P + V +VGR+G+GKS+++N + R E + G+IL+DG D+A + L LR+ + ++
Sbjct: 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVS 412
Query: 869 QSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926
Q VLF+ T+ N+ + A++ AL A+ +D + + LGLD + E G S
Sbjct: 413 QDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSG 472
Query: 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986
GQRQ L+++RALL+ + IL+LDEAT+A+D ++ L+Q + + T L+IAHRL+TI
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE 532
Query: 987 DCDRILLLDSGRVLEYDTPEELLSNEG 1013
DRI+++D GR++E T ELL+ G
Sbjct: 533 KADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 8e-56
Identities = 100/242 (41%), Positives = 156/242 (64%), Gaps = 13/242 (5%)
Query: 787 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
I+F++V RY RP++P +L GLS TIPP V +VG +G GKS++++ L R + G
Sbjct: 1 IEFKNVSFRYPSRPDVP-ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 901
IL+DG DI L LR +G++ Q PVLF GT+ N+ P + +D ++ EA ++A+
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKAN 117
Query: 902 LKDAIRRNSL--GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+ D I SL G D V E G S GQ+Q ++++RALLR KIL+LDEAT+A+D ++
Sbjct: 118 IHDFI--MSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
L+Q+ + K T ++IAHRL+TI + D I +L +G+V+E T +EL++ +G ++K+
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG-VYAKL 234
Query: 1020 VQ 1021
V+
Sbjct: 235 VK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 1e-55
Identities = 117/476 (24%), Positives = 214/476 (44%), Gaps = 32/476 (6%)
Query: 559 GRIINRFAKDLGDID----RNVAVFVNMFMGQVSQLLSTFVL--IGIVSTMSLWAIMPLL 612
G ++NR D+ +D R +A V V + T L I + L I+ LL
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVAL---VLIAVVTIGLSFFSIPLALLLGLILLLL 171
Query: 613 LLFY--AAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKS 670
LL Y + + R+ + +QF + + G + + + A D +
Sbjct: 172 LLIIPTLFYRAGRKFGAHLA----QGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEAT 227
Query: 671 MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSY 730
++ L ++ GL++ + + A + + LL+ +
Sbjct: 228 EASWLKAQRKQARFTGLSDAILLLIAGLLV-IGLLLWMAAQVGAGALAQPGAALALLVIF 286
Query: 731 ALNITSLLTAVLRLASLA----ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGS 786
A L A LA A + + R+ ++ + P V + + +
Sbjct: 287 AA-----LEAFEPLAPGAFQHLGQVIASARRLN---DILDQKPEVTFPDEQTA--TTGQA 336
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ +V Y + L + T+ +KV I+GR+G+GKS++L L + ++G I
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDA 905
++G +IA LR+ + ++ Q LFSGT+R NL + SD +LW AL++ L+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKL 456
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
+ GL+ + E G S G+R+ L+L+RALL + + +LDE T +D T+ +
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 966 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021
+ E + T+L++ HRL + DRI++LD+G+++E T ELL+N G + ++ Q
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNG-RYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 3e-55
Identities = 159/603 (26%), Positives = 283/603 (46%), Gaps = 66/603 (10%)
Query: 440 QEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETL------RVSSSTWLSYWTDQ 493
Q + ET + F++L L + L L E RV L D+
Sbjct: 140 QGQSETADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVID--TLG--GDK 195
Query: 494 SSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 553
+F+ + S+ S V L + + R+ + + S+LR + FF
Sbjct: 196 GPPALASAIFFMCLLSIASS--VSAGLRGGSFNYTMARINL-RIREDLFRSLLRQDLGFF 252
Query: 554 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAIMP 610
N G + +R + D + R++++ VN+ + + LL + +S TM +P
Sbjct: 253 DENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLP 312
Query: 611 LLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRA-----------YK 658
L+ L + YQ + E++ +++ ++ A+ EAL+G+ T+R+ +
Sbjct: 313 LVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKE 368
Query: 659 AYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQE 718
A + +N + Y ++G L+ V+ G Q
Sbjct: 369 ALEETLQLNKRKALAYAGYLWTT-----------SVLGMLIQ-----VLVLYYGG---QL 409
Query: 719 AFASTM--GLLLSYALNITSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVIE 773
+ G L+S+ L L AV L+ + + AV E+V Y++ PL
Sbjct: 410 VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT 469
Query: 774 SNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831
P G I+F+DV Y RP++P VL GL+FT+ P + V +VG +G+GKS++
Sbjct: 470 -LAPLN---LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVA 524
Query: 832 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSD 890
L + + G++L+DG + ++ L + + ++ Q PVLFSG+VR N+ ++ D
Sbjct: 525 ALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD 584
Query: 891 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950
++ A + A+ D I G D +V E G S GQ+Q ++++RAL+R+ ++L+LDEA
Sbjct: 585 EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644
Query: 951 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010
T+A+D + L+Q++ S T+L+IAHRL+T+ D+IL+L G V+E T ++L+
Sbjct: 645 TSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702
Query: 1011 NEG 1013
++G
Sbjct: 703 DQG 705
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 201 bits (513), Expect = 6e-55
Identities = 110/397 (27%), Positives = 189/397 (47%), Gaps = 22/397 (5%)
Query: 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWE----NSFQSKVQNVRNDELS 62
+ + +KL++ + + + E L+ + +K + E F+ + +R L
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 63 WFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFML 122
R LA + + V V++ G F +L G LT + L P+ L
Sbjct: 231 ASRLEALLAPLMLLLSSL--GTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQL 288
Query: 123 PNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL 182
+++ + A+ + +R+ E L E ++ P PL + +I N FS+ K +P L
Sbjct: 289 GEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYPGK--KPVLK 346
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI----RGTVA 230
+I+ I G VAIVG +G GK++LI +L P S D + R +
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289
V Q +F+ T+R+NI G E+A+ + + + LP G T +GERGVN+
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349
SGGQ+QR+++ARA+ N + I D+ SALD + D ++ L G+T +++ ++L
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA-LKKLLKGRTTLIIAHRLS 525
Query: 350 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
+ DRII++ G + E GT E+L G L+ +L +
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 6e-55
Identities = 139/499 (27%), Positives = 250/499 (50%), Gaps = 44/499 (8%)
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIV 600
+ +L P+ +F + +G + R ++L I RN + V LL V + ++
Sbjct: 218 LYRHLLGLPLGYFESRRVGDTVAR-VRELEQI-RNF--LTGSALTVVLDLLFVVVFLAVM 273
Query: 601 ---STMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQ--FGEALNGLSTIR 655
S ++ L+ + ++ R KR++ A E++ G+ TI+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILR--KRVEDKFERSAAATSFLVESVTGIETIK 331
Query: 656 AYKAYDRMADINGKSMDKNIR--YTLVNMGANRWLAIRL--EIVGGLMIWLTATFAVVQN 711
A + + + + + + + N+G AI L ++ +++W A +V
Sbjct: 332 ATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAH--LVIG 389
Query: 712 GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSE- 767
G+ + G L+++ + + VLRLA L ++ + A+ER+G+ + P+E
Sbjct: 390 GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441
Query: 768 --APLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 825
A L G+I FE++ RY P+ P VL L+ I P + +GIVG +G+
Sbjct: 442 RSAGLAALPEL-------RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGS 494
Query: 826 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 882
GKS++ L R+ + G++L+DG D+A LR+ +G++ Q VLFS ++R N+
Sbjct: 495 GKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC 554
Query: 883 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942
+P + A + A D I G + +V E G N S GQRQ ++++RAL+
Sbjct: 555 NP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002
+IL+ DEAT+A+D ++ALI + +RE + T++IIAHRL+T+ CDRI++L+ G++ E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 1003 DTPEELLSNEGSSFSKMVQ 1021
EELL+ ++++ Q
Sbjct: 673 GRHEELLA-LQGLYARLWQ 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 2e-53
Identities = 110/381 (28%), Positives = 192/381 (50%), Gaps = 37/381 (9%)
Query: 646 EALNGLSTIRAYKAYDRMA----DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW 701
E+L+GL TI+A A R ++ ++ A + ++V ++
Sbjct: 329 ESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV- 387
Query: 702 LTATFAVVQNGSAENQEAFASTMG------LLLSYAL----NITSLLTAVLRLASLAENS 751
+ + + ++ + TMG +L AL + LLT R + +
Sbjct: 388 VVGVYLI-----SDGE----LTMGGLIACVMLSGRALAPLGQLAGLLT---RY----QQA 431
Query: 752 LNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFT 810
A++ + ++LP E P P G I+F +V Y + P L +S T
Sbjct: 432 KTALQSLDELMQLPVERP----EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLT 487
Query: 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 870
I P +KV I+GR G+GKS++L L + + G +L+DG DI + DLR+ +G +PQ
Sbjct: 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQD 547
Query: 871 PVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929
P LF GT+R N+ + + D ++ A E A + + +RR+ GLD Q+ E G + S GQR
Sbjct: 548 PRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607
Query: 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 989
Q ++L+RALLR IL+LDE T+A+D R++ + ++ T++++ HR + + D
Sbjct: 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVD 667
Query: 990 RILLLDSGRVLEYDTPEELLS 1010
RI+++D+GR++ +++L
Sbjct: 668 RIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 4e-53
Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 3/245 (1%)
Query: 771 VIESNRPPPGWP-SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 829
V ++ PP WP G++ F +V Y P P+L+G+SFTIP V IVG +GAGKS+
Sbjct: 246 VSDAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKST 304
Query: 830 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH- 888
+L LFR ++ G I IDG DI LR+ +GI+PQ VLF+ T+ +N+
Sbjct: 305 ILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDA 364
Query: 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948
+ ++ A E A + D I+ G D V E G S G++Q ++++R +L+ IL+LD
Sbjct: 365 TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILD 424
Query: 949 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008
EAT+A+D T+ IQ +RE T L+IAHRL+TIID D I++LD+GR++E T EEL
Sbjct: 425 EATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484
Query: 1009 LSNEG 1013
L+ G
Sbjct: 485 LAAGG 489
|
Length = 497 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 1e-52
Identities = 143/481 (29%), Positives = 237/481 (49%), Gaps = 41/481 (8%)
Query: 552 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVS---TMSLWAI 608
FF N G +++R D + + ++M + + +++ I S T +
Sbjct: 108 FFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLA 167
Query: 609 MPLLLLFYAAYLYYQSTAREVKRL-----DSITRSPVYAQFGEALNGLSTIRAYKAYDRM 663
+PL+LL + R V++L D I + YA GE L + T++A+ D
Sbjct: 168 VPLVLLPILLF------GRRVRKLSRESQDRIADAGSYA--GETLGAIRTVQAFGHEDAE 219
Query: 664 ADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGG---LMIWLTATFAVVQNGSAENQEA 719
G +++K + L AI + +V G ++W+ A V G
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH--DVIAGKMS---- 273
Query: 720 FASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP-- 777
A T+G + YA+ + + + + + + A ER+ IEL P + P
Sbjct: 274 -AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERL---IELLQAEPDIKAPAHPKT 329
Query: 778 PPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835
P P G I+FE V Y RP+ P L GL+ T+ P + V +VG +GAGKS++ L
Sbjct: 330 LPV-PLRGEIEFEQVNFAYPARPDQP-ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL 387
Query: 836 RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDAD 892
R + + GRIL+DG D+ + +LR + ++PQ PVLF+ +V N+ P + +D +
Sbjct: 388 RFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEE 445
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
+ A AH + I G D + E G S GQRQ ++++RA+L+ + IL+LDEAT+
Sbjct: 446 VEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 953 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
A+D ++ L+Q+ + K T LIIAHRL T++ DRI+++D GR++ T EL++
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565
Query: 1013 G 1013
G
Sbjct: 566 G 566
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 6e-52
Identities = 83/234 (35%), Positives = 138/234 (58%), Gaps = 5/234 (2%)
Query: 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR 226
N +FS P L NINL I G ++AI G TG GKTSL+ +LGEL P + I+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP---SEGKIK 95
Query: 227 --GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
G +++ Q SWI T+++NI+FG +++ RY+ + L+ D+ P D T +GE
Sbjct: 96 HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGE 155
Query: 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 344
G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+ ++ KTR+LV
Sbjct: 156 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215
Query: 345 TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 398
T+++ L + D+I+++HEG GTF +L + F + +++ E+
Sbjct: 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSAER 269
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 7e-52
Identities = 88/239 (36%), Positives = 146/239 (61%), Gaps = 2/239 (0%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G + +D+ +Y VL +SF+I P +VG++GRTG+GKS++L+ R++ E G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 904
I IDG L RK G+IPQ +FSGT R NLDP+ + SD ++W+ E LK
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
I + LD + + G S G +QL+ L+R++L ++KIL+LDE +A +D T +I+K
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 965 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023
T+++ F CT+++ HR+ +++C R L+++ +V +YD+ ++LL NE S F + + +
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAISPS 237
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 1e-51
Identities = 85/230 (36%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I FE V RY+P+ P +L +S I P + VGIVGR+G+GKS++ + R E GR+L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA- 905
+DG D+A LR+ +G++ Q VLF+ ++R N+ + +E A L A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA--LADPGMSMERVIEAAKLAGAH 118
Query: 906 --IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
I G D V E G S GQRQ ++++RAL+ +IL+ DEAT+A+D ++ I
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 964 KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
+ + + T++IIAHRL+T+ + DRI++++ GR++E + +ELL+ G
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENG 228
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 1e-51
Identities = 98/257 (38%), Positives = 146/257 (56%), Gaps = 7/257 (2%)
Query: 776 RPPPGWPS----SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831
R PPG G+++F+DV Y + +SF P V IVG TGAGKS+++
Sbjct: 320 RDPPGAIDLGRVKGAVEFDDVSFSY-DNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 832 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SD 890
N L R+ + + GRILIDG DI LR+ + ++ Q LF+ ++ N+ +D
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438
Query: 891 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950
++ A ERA D I R G D V E G S G+RQ L+++RALL+ IL+LDEA
Sbjct: 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 951 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010
T+A+DV T+A ++ + E K T IIAHRL+T+ + DRIL+ D+GRV+E + +E L
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE-LV 557
Query: 1011 NEGSSFSKMVQSTGAAN 1027
G F+ ++++ G
Sbjct: 558 ARGGRFAALLRAQGMLQ 574
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 4e-50
Identities = 146/545 (26%), Positives = 249/545 (45%), Gaps = 97/545 (17%)
Query: 512 SFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGD 571
+ G LA S ++ L A+ +LR P+ FF G + +R
Sbjct: 186 AVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA------ 239
Query: 572 IDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFY--------------- 616
M + Q+ ++LS L ++S ++A++ L L+FY
Sbjct: 240 ----------MGISQIRRILSGSTLTTLLS--GIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 617 -------AAY--LYYQSTAREVK-RLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAD 665
+ + E+ ++ +T + +NG+S +R A +R A
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLT--------VQLINGISKLRVAGAENRAFAR 339
Query: 666 INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMG 725
R L + + + L+ A V+ + + FA+ +
Sbjct: 340 WAK------------LFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL-----FAAAIS 382
Query: 726 LLLSYALNI----------TSLLTAVLRLASLAENSLNAV---ERVGNYIELPSEAPLVI 772
LL L++ S AV +L++ + L + ER +E E +
Sbjct: 383 LLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE----V 438
Query: 773 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 832
+ + PG SG+I+ + V RYRP+ P +L +S I P + V IVG +G+GKS
Sbjct: 439 DEAKTDPG-KLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKS---- 493
Query: 833 TLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 888
TL R++ E G + DG D+A + +R+ LG++ Q+ L SG++ N+ +
Sbjct: 494 TLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPL 553
Query: 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948
+ + WEA A L + IR +G+ +SE G S GQRQ L ++RAL+R+ +IL+ D
Sbjct: 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFD 613
Query: 949 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008
EAT+A+D RT A++ +++ E T ++IAHRL+TI + DRI +LD+GRV++ T +EL
Sbjct: 614 EATSALDNRTQAIVSESL--ERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671
Query: 1009 LSNEG 1013
++ EG
Sbjct: 672 MAREG 676
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 7e-50
Identities = 145/499 (29%), Positives = 229/499 (45%), Gaps = 54/499 (10%)
Query: 541 MLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ-VSQLLSTFVLIGI 599
L ILR P+ FF G I +R ++ VA F++ GQ + L +L+
Sbjct: 233 FLWHILRLPVRFFAQRHAGDIASRV-----QLNDQVAEFLS---GQLATTALDAVMLVFY 284
Query: 600 VSTMSLW-AIMPLLLLFYAA----YLYYQSTARE--VKRLDSITRSPVYAQFGEALNGLS 652
M L+ ++ L+ + +AA L S R +RL + G A++GL
Sbjct: 285 ALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQ-DAGKLT---GVAISGLQ 340
Query: 653 TIRAYKAYDRMADINGKSMDKNIRYTLVNMG-----ANRWLAIRLEIVGGL--MIWLTAT 705
+I KA +D + + L+N + L + ++ L + L
Sbjct: 341 SIETLKASGLESDFFSRW--AGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVG 398
Query: 706 FAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLA------ENSLNAVERVG 759
V G T+G+L+++ ++S L V L E LN ++ V
Sbjct: 399 GLRVMEGQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVL 450
Query: 760 NYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 819
P + P SG ++ ++ Y P PP++ S T+ P +V +
Sbjct: 451 RNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVAL 510
Query: 820 VGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 875
VG +G+GKS T+ ++V + G IL DG + L + ++ Q LF
Sbjct: 511 VGGSGSGKS----TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFE 566
Query: 876 GTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934
GTVR NL + DADL A + A + D I G DA+++E G N S GQRQ L +
Sbjct: 567 GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEI 626
Query: 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994
+RAL+R IL+LDEAT+A+D T+ +I +R + CT +I+AHRL+TI DCD I++L
Sbjct: 627 ARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVL 684
Query: 995 DSGRVLEYDTPEELLSNEG 1013
+ G+V++ T EEL + G
Sbjct: 685 ERGKVVQRGTHEELWAVGG 703
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 1e-49
Identities = 140/570 (24%), Positives = 262/570 (45%), Gaps = 47/570 (8%)
Query: 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFG-------QVL 517
+++ +++ + + ++ S +L Q + T+ P ++S G Q +
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYL-----QKIIDTYIPHKMMGTLGIISIGLIIAYIIQQI 211
Query: 518 VTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVA 577
++ + L + + + + + + PM FF T G I++RF ID +
Sbjct: 212 LSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALAS 271
Query: 578 VFVNMFMGQVSQLLSTFVLIGIV---STMSLWAIMPLLLLFYAAYLY-----YQSTAREV 629
+++F+ + V++G+ M L+ + L + YA + + +
Sbjct: 272 TILSLFLD-----MWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDA 326
Query: 630 KRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGAN 685
+ +++ S + E LNG+ TI++ + Y ++ G ++K+ +Y + G
Sbjct: 327 MQANAVLNSSII----EDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQ 382
Query: 686 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 745
A+ I+ +++W A + + F + + L+ NI +L L+ A
Sbjct: 383 AIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPK-LQAA 441
Query: 746 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLH 805
+A N LN V V SE I + +G I DV Y +L
Sbjct: 442 RVANNRLNEVYLV------DSE---FINKKKRTELNNLNGDIVINDVSYSYGYG-SNILS 491
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865
+S TI + K IVG +G+GKS++ L + G IL++GF + LR+ +
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551
Query: 866 IIPQSPVLFSGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923
+PQ P +FSG++ NL ++ S ++W A E A +KD I LG ++SE G +
Sbjct: 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611
Query: 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 983
S GQ+Q ++L+RALL SK+L+LDE+T+ +D T+ I + + T++ +AHRL+
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL-NLQDKTIIFVAHRLS 670
Query: 984 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
D+I++LD G+++E + +ELL G
Sbjct: 671 VAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 4e-49
Identities = 159/564 (28%), Positives = 271/564 (48%), Gaps = 68/564 (12%)
Query: 481 VSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS---YWLIISSLYAA--- 534
VS +SY+ D K + PL + + L+ V + L + Y + AA
Sbjct: 40 VSGPLLISYFIDNMVAKGNLPL---GLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGV 96
Query: 535 -KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLST 593
++L ++ + LR P+ F T P+G++I+R D V ++++ V+ +L +
Sbjct: 97 VQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTND-------TEVIRDLYVTVVATVLRS 149
Query: 594 FVLIG--IVSTMSL-W-------AIMPLLLLFYAAYLYYQST--AREVKR-LDSITRSPV 640
LIG +V+ SL W I P +L+ Y Y ST R V+ L I
Sbjct: 150 AALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY-STPIVRRVRAYLADINDG-- 206
Query: 641 YAQFGEALNGLSTIRAYKAYDRMADINGKSM-DKNIRYTLVNMGANRW----------LA 689
F E +NG+S I+ ++ R G+ M + + + + M R L
Sbjct: 207 ---FNEVINGMSVIQQFRQQARF----GERMGEASRSHYMARMQTLRLDGFLLRPLLSLF 259
Query: 690 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 749
L + G LM++ + ++ G AF S +G L + +T+ S+ +
Sbjct: 260 SALILCGLLMLFGFSASGTIEVGVLY---AFISYLGRLNEPLIELTTQ-------QSMLQ 309
Query: 750 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSF 809
++ A ERV ++ P + +RP SG I ++V YR + VL ++
Sbjct: 310 QAVVAGERVFELMDGPRQQ--YGNDDRPL----QSGRIDIDNVSFAYRDD-NLVLQNINL 362
Query: 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 869
++P V +VG TG+GKS++ + L L G I +DG ++ LR+ + ++ Q
Sbjct: 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ 422
Query: 870 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929
PV+ + T N+ + S+ +W+ALE L + R GL + E G N SVGQ+
Sbjct: 423 DPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482
Query: 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 989
QLL+L+R L++ +IL+LDEATA +D T+ IQ+ + + T+++IAHRL+TI++ D
Sbjct: 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEAD 542
Query: 990 RILLLDSGRVLEYDTPEELLSNEG 1013
IL+L G+ +E T ++LL+ +G
Sbjct: 543 TILVLHRGQAVEQGTHQQLLAAQG 566
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 4e-47
Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 6/231 (2%)
Query: 767 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 826
+A + + P + S++F V + Y P P L +SFT+PP ++V +VG +GAG
Sbjct: 302 DAAPRPLAGKAPVTAAPAPSLEFSGVSVAY-PGRRPALRPVSFTVPPGERVALVGPSGAG 360
Query: 827 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---D 883
KS++LN L V+ G I ++G +A R + +PQ P LF+GT+ N+
Sbjct: 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLAR 420
Query: 884 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943
P + SDA++ EALERA L + + GLD + E G S GQ Q L+L+RA LR +
Sbjct: 421 P--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAP 478
Query: 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994
+L+LDE TA +D T+A + + +R + T+L++ HRL DRI++L
Sbjct: 479 LLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 178 bits (455), Expect = 2e-46
Identities = 108/401 (26%), Positives = 198/401 (49%), Gaps = 22/401 (5%)
Query: 6 TFIISR-MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWF 64
T I +++ T++ ++ + ++ + E + ++ VK A E F+S+ N +++
Sbjct: 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIG 369
Query: 65 RKAQFLAACNSFILNSIPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFML 122
K + LA + I + + L V ++ FG +L G+LT + L P+ L
Sbjct: 370 FKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRL 429
Query: 123 PNMITQVVNANVSLKRMEEFLLA--EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPT 180
+ T A V+L+R+ + L E++ L I N F + + P
Sbjct: 430 SQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-PDDPPV 488
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS-AVIRGT 228
L +++L+IP G VAIVG +G GK++L+ +LG P ++D A +R
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548
Query: 229 VAYVPQVSWIFNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286
V YV Q ++F+ ++R+NI G+ + E A + ++ LP G T +GE G
Sbjct: 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIE-AAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 346
N+SGGQ+QR+++ARA+ S + + D+ SALD + + L G+T +++ +
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN-LLQILQGRTVIIIAH 666
Query: 347 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387
+L + DRII++ +G + E+G+ E+L G L+ +L +
Sbjct: 667 RLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 7e-46
Identities = 89/231 (38%), Positives = 136/231 (58%), Gaps = 2/231 (0%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G I+F +V Y + P L ++F IP V +VGR+G+GKS++ N L R +++ G
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHL 902
IL+DG D+ + L LR + ++ Q+ LF+ T+ N+ +S + EA A+
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYA 459
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++ I
Sbjct: 460 MDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
Q + E K+ T L+IAHRL+TI D IL+++ G ++E T ELL+ G
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 9e-44
Identities = 75/218 (34%), Positives = 134/218 (61%), Gaps = 4/218 (1%)
Query: 785 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
G +KF++V Y RP+ VL +SFT+ P + +VG +G+GKS+++ L + +
Sbjct: 10 GIVKFQNVTFAYPTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 843 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAH 901
G++L+DG I+++ L + ++ Q PVLF+ +++ N+ S + EA ++AH
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
I + G D +V E G S GQ+Q ++++RAL+R ++L+LDEAT+A+D ++
Sbjct: 129 AHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999
+Q+ + + + T+L+IAHRL+T+ D+IL+LD GR+
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 5e-43
Identities = 97/346 (28%), Positives = 157/346 (45%), Gaps = 31/346 (8%)
Query: 64 FRKA-------QFLAACNSFILN---SIPVLVTVVSFGMFTLLG-GDLTPARAFTSLSLF 112
FRKA FL +S +L + + + V G F LLG GDLT L L
Sbjct: 212 FRKATMSVLRIAFL---SSAVLEFFAYLSIALVAVYIG-FRLLGEGDLTLFAGLFVLILA 267
Query: 113 AVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSGLPAISIRNGYFS 171
PL L + + ++ L + + P I I S
Sbjct: 268 PEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLS 327
Query: 172 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS--- 222
+ +P L ++NL I G L A+VG +G GK++L++ +LG L P V+
Sbjct: 328 FRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRD 387
Query: 223 ---AVIRGTVAYVPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGD 278
R +++V Q ++F T+R+NIL A+D L + G D
Sbjct: 388 LSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
T IGE G +SGGQ QR+++ARA+ S + + + D+P + LDA + + + ++
Sbjct: 448 -TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII-LQALQELAKQ 505
Query: 339 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
KT +++T++L + DRI+++ G + E+GT E+LS L+ L
Sbjct: 506 KTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 3e-42
Identities = 110/375 (29%), Positives = 185/375 (49%), Gaps = 29/375 (7%)
Query: 11 RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFL 70
+ +L +E ++ + +R ++ E L+ ++ +K E FQ + + K++FL
Sbjct: 308 PLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFL 367
Query: 71 AACNSFILNSIPVLVTV--VSFGMFTLLGGDLTPAR--AFTSLSLFAVLRFPLFMLPNMI 126
+ + I LV+V V G++ + G+LT A LS A+ PL L ++
Sbjct: 368 SNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALA--PLGQLAGLL 425
Query: 127 TQVVNANVSLKRMEEFLLAE-----EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTL 181
T+ A +L+ ++E + L P L G I RN F++ E P L
Sbjct: 426 TRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRL-QG--EIEFRNVSFAY-PGQETPAL 481
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------SAVIRGTV 229
N++L I G VAI+G G GK++L+ +LG P + A +R +
Sbjct: 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541
Query: 230 AYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 288
YVPQ +F T+RDNI G+ + + +A ++ + + P G +IGERG +
Sbjct: 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS 601
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348
+SGGQ+Q V++ARA+ + + + D+P SA+D + DR ++ L+GKT VLVT++
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKRWLAGKTLVLVTHRT 660
Query: 349 HFLSQVDRIILVHEG 363
L VDRII++ G
Sbjct: 661 SLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-41
Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 3/242 (1%)
Query: 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
G+++F + + + +SF V IVG TGAGK++++N L R+ + G
Sbjct: 332 KGAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390
Query: 844 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHL 902
+ILIDG DI LRK + + Q LF+ ++R N+ E +D +++EA + A
Sbjct: 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAA 450
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
D I + S G D V E G S G+RQ L+++RA+L+ + ILVLDEAT+A+DV T+A +
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARV 510
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+ I K+ T IIAHRL+T+ + D +L LD GR++E + +E L + F K+++
Sbjct: 511 KNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE-LIQKDGRFYKLLRR 569
Query: 1023 TG 1024
+G
Sbjct: 570 SG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 159 bits (406), Expect = 5e-41
Identities = 87/269 (32%), Positives = 143/269 (53%), Gaps = 10/269 (3%)
Query: 752 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 811
+ + R+ E E S S+ +V Y + PVL GLS I
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAAAD----QVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 871
+KV ++GRTG GKS++L L R + ++G IL++G IA + LR+ + ++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 872 VLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928
LFS T+R NL P SD L E L++ L + + + GL+A + E G S G+
Sbjct: 424 HLFSATLRDNLLLAAP--NASDEALIEVLQQVGL-EKLLEDDKGLNAWLGEGGRQLSGGE 480
Query: 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 988
++ L ++RALL + +L+LDE T +D T+ I + + E ++ T+L+I HRL +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 989 DRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
DRI ++D+G+++E T +ELL+ +G +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 2e-40
Identities = 69/216 (31%), Positives = 123/216 (56%), Gaps = 7/216 (3%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866
L+FT+P ++ +VG +GAGK+S+LN L + +G + I+G ++ + RK L
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKINGIELRELDPESWRKHLSW 427
Query: 867 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923
+ Q+P L GT+R N+ +P + SD L +ALE A + + + GLD + +
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485
Query: 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 983
SVGQ Q L+L+RALL+ ++L+LDE TA++D ++ L+ + + + T L++ H+L
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545
Query: 984 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
+ D+I ++ G++++ E LS G F+ +
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAE-LSQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-40
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 24/268 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ ++ +Y + L G+SF + P + G++G GAGK+++L L +++ G IL
Sbjct: 5 IEVRNLTKKYGGDKT-ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD-------PFSEHSDADLWEALE 898
+ G+D+ K +R+ +G +PQ P L+ TVR NL+ E ++ + E LE
Sbjct: 64 VLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
L+D + S G +Q LS++ ALL ++L+LDE T+ +D +
Sbjct: 123 LFGLEDKANK-----------KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 959 DALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015
I + +RE K T+L+ H L + CDR+++L+ G+++ TPEEL G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 1016 FSKMVQSTGAANAQYLRSLVLGGEAENK 1043
++ A+ L L L E
Sbjct: 232 GVIELEPERLELAELLEGLKLVKGEEEL 259
|
Length = 293 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 4e-40
Identities = 105/418 (25%), Positives = 183/418 (43%), Gaps = 34/418 (8%)
Query: 576 VAVFVNM-FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDS 634
VA+ V + ++ L LI + + PL+ + ++ + + RL
Sbjct: 136 VALVVGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLV-----SLRAARAAEQALARL-- 188
Query: 635 ITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 694
R + AQ +AL+G + + A + + + + T A A+ +
Sbjct: 189 --RGELAAQLTDALDGAAELVAS---GALPAALAQVEEADRELTRAERRAAAATALGAAL 243
Query: 695 ---VGGLMIWLTATFAVVQNGSAENQEA---FASTMGLLLSYALNITSLLT-AVLRLASL 747
GL + A+ + A A + L L+ A + L A +L +
Sbjct: 244 TLLAAGLAVLGALWAGG--PAVADGRLAPVTLAVLVLLPLA-AFEAFAALPAAAQQLTRV 300
Query: 748 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGL 807
A ER+ ++ + +++ D+ Y P PPVL G+
Sbjct: 301 RA----AAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGY-PGAPPVLDGV 354
Query: 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867
S +PP ++V I+G +G+GKS++L TL +++ +G + +DG ++ ++R+ + +
Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVC 414
Query: 868 PQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924
Q LF TVR NL P + +D +LW ALER L D +R GLD + E G
Sbjct: 415 AQDAHLFDTTVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLDTVLGEGGARL 472
Query: 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 982
S G+RQ L+L+RALL + IL+LDE T +D T + + + T+++I H L
Sbjct: 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 1e-39
Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 55/213 (25%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 219
I +N FS+ + +P L +++L I G VAIVG +G GK++L+ +L P S
Sbjct: 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 220 ---------DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 270
+R +AYVPQ ++F+ T+R+NIL
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL---------------------- 97
Query: 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
SGGQ+QR+++ARA+ + + I D+ SALD + +
Sbjct: 98 -------------------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 331 CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 363
+R GKT +++ ++L + DRII++ +G
Sbjct: 139 -LRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 81/240 (33%), Positives = 126/240 (52%), Gaps = 26/240 (10%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I N F++D RP L +++ IP G VAIVG +G GK S I +L VS S
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGK-STILRLLFRFYDVSSGS 57
Query: 223 AVI-------------RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYE--KAIDVT 265
+I R + VPQ + +FN T+ NI +G A + E KA +
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQI- 116
Query: 266 SLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
HD + P G T +GERG+ +SGG+KQRV++ARA+ N + + D+ SALD H
Sbjct: 117 ---HDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTE 173
Query: 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
R++ +R G+T +++ ++L + D+II++ +G + E GT E+L G L+ ++
Sbjct: 174 REIQ-AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-39
Identities = 88/310 (28%), Positives = 150/310 (48%), Gaps = 35/310 (11%)
Query: 75 SFILN---SIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQV-- 129
S +L ++ V + V G F LL GDL A F +L P F LP + Q+
Sbjct: 231 SAVLELFATLSVALVAVYIG-FRLLAGDLDLATGL-----FVLLLAPEFYLP--LRQLGA 282
Query: 130 -----VNANVSLKRMEEFLLAEEKILLPNPPLTSG-LPAISIRNGYFSWDSKAERPTLLN 183
+ + + + L A + L P+T+ P++ ++ + RP L
Sbjct: 283 QYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGR--RPALRP 340
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231
++ +P G VA+VG +G GK++L++ +LG + P + AV R +A+
Sbjct: 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAW 400
Query: 232 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 290
VPQ ++F T+ +NI A +A++ L + LP G T IGE G +S
Sbjct: 401 VPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLS 460
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 350
GGQ QR+++ARA ++ + + D+P + LDA +V + +R G+T +LVT++L
Sbjct: 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA-LRALAQGRTVLLVTHRLAL 519
Query: 351 LSQVDRIILV 360
+ DRI+++
Sbjct: 520 AALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 3e-38
Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 25/355 (7%)
Query: 53 VQNVRNDELSWF---RKAQFLAACNSFILNSIPVLVTVVSFGMFTLL---GGDLTPARAF 106
+ E SW RK + IL I L+ + G P A
Sbjct: 221 RTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAAL 280
Query: 107 TSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIR 166
L +FA L + P + S +R+ + L + ++ P+ + A+ +R
Sbjct: 281 ALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELR 340
Query: 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----- 221
N F++ + + L N NL + G VAI+G +G GK++L+ + G P +
Sbjct: 341 NVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399
Query: 222 -------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDL 271
+R T++ + Q +F+ T+RDN+ + A E+ L+ L
Sbjct: 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN--PDASDEELWAALQQVGLEKLL 457
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
+ P G T +GE G +SGG+++R+++ARA+ ++ +++ D+P LD RQV
Sbjct: 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL- 516
Query: 332 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
+ GKT ++VT++L L ++DRII++ G + EEGT +L N +++L +
Sbjct: 517 LFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 4e-38
Identities = 73/215 (33%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
I RN FS+ + E P L N++L I G VAI+G G GK++L+ + G P S
Sbjct: 2 RIEFRNVSFSYPN-QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 220 ------DAS----AVIRGTVAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQ 268
D A +R + YVPQ +F T+RDNI G+ + R +A ++ +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
++ P G +IGERG +SGGQ+Q V++ARA+ ++ + + D+P SA+D + ++
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 329 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 363
+R +R L KT +++T++ L VDRII++ G
Sbjct: 181 ER-LRQLLGDKTLIIITHRPSLLDLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-38
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 42/214 (19%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E+V RY PPVL +SF+I P + + I+G +G+GKS++ + ++ GR+
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
+DG DI+++ +L +G +PQ LFSG++ N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
S GQRQ L L+RAL +ILVLDE + +DV + + + I
Sbjct: 97 -----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI 139
Query: 967 RE-EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999
+ T ++IAHR T+ DRIL+L+ GRV
Sbjct: 140 AALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 8e-38
Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 217
I N FS+D K +P L +IN I G VAIVG TG GKT+LI+ ++ P
Sbjct: 3 IEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 218 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 270
+ D S +R + V Q +++F+ T+ +NI G A E+ I+
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR--PNATDEEVIEAAKEAGA 118
Query: 271 LDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
D LP G T +GE G N+S G++Q +++ARA+ + + I D+ S +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTET-EKL 177
Query: 328 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+ + G+T +++ ++L + D+I+++ +G + EEGT ++L
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDEL 224
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 9e-36
Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 21/238 (8%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
+ +N F + P L +I+LDIP G VA+VG +G GK++L++ ++ V
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVN-LIPRFYDVDSGR 58
Query: 223 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
+I G + V Q ++FN TV +NI +G A E+ + +
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR--PGATREEVEEAARAAN 116
Query: 270 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
+ LP G T IGERGV +SGGQ+QR+++ARA+ + + I D+ SALD R
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 327 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
V + + +T ++ ++L + DRI+++ +G + E GT E+L G ++ KL
Sbjct: 177 V-QAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-35
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
++ E++ Y P+L LSF+IP + GI+G G+GKS++L L +++ + G +
Sbjct: 2 MLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 846 LIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV-------RF-NLDPFSEHSDADLWEA 896
L+DG DIA +L K L +PQSP G TV R+ +L F S D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENF---SVGQRQLLSLSRALLRRSKILVLDEATAA 953
E L LGL A S G+RQ + ++RAL + + IL+LDE T+
Sbjct: 120 EEALEL--------LGL---EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 954 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLS 1010
+D+ + + +R+ K T++++ H LN D ++LL G+++ TPEE+L+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228
Query: 1011 NE 1012
E
Sbjct: 229 EE 230
|
Length = 258 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 73/244 (29%), Positives = 125/244 (51%), Gaps = 24/244 (9%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I +N F + S+ + P L ++L IP G VA+VG +G GK++++S + P S
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 223 AV------------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ-- 268
+ +R + V Q +F+ T+ +NI +G A E+ +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK--PDATDEEVEEAAKKANI 118
Query: 269 HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
HD + LP G T +GERG +SGGQKQR+++ARA+ N + + D+ SALDA + V
Sbjct: 119 HDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
Query: 328 ---FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
DR ++ G+T +++ ++L + D I ++ G V E+GT ++L ++ KL
Sbjct: 179 QEALDRAMK----GRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKL 234
Query: 385 MENA 388
++
Sbjct: 235 VKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 4e-34
Identities = 98/360 (27%), Positives = 167/360 (46%), Gaps = 37/360 (10%)
Query: 658 KAYDRMADINGK--SMDKNIRYTL--VNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 713
A +R +D NG ++ + +R L +G WL I+ EI G+MI
Sbjct: 233 SAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI------------- 279
Query: 714 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773
A + +L AL L A + A S +R+ + A +
Sbjct: 280 -------AGS--ILSGRALAPIDLAIANWKQFVAARQSY---KRLNELLAELPAAAERMP 327
Query: 774 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT 833
P G++ E + + P+L G+SF + + +GI+G +G+GKS++
Sbjct: 328 LPAP------QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARL 381
Query: 834 LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD- 892
L I G + +DG D+ ++ L + +G +PQ LF GT+ N+ F E +D +
Sbjct: 382 LVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
+ EA A + + I R G D ++ E G S GQRQ ++L+RAL ++VLDE +
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 953 AVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011
+D + AL + + + T+++IAHR + + D+IL+L GR+ + EE+L+
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-33
Identities = 90/298 (30%), Positives = 150/298 (50%), Gaps = 15/298 (5%)
Query: 723 TMGLLLSYALNITSLLTAVLRLASLAENSLNAVER----VGNYIELPSEAPLVIESNRPP 778
T+G L S+ + + ++ +L LA + N VER + +EAP+V + + P
Sbjct: 252 TLGQLTSFVMYLGLMIWPMLALAWM----FNIVERGSAAYSRIRAMLAEAPVVKDGSEPV 307
Query: 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
P G + Y P L ++FT+ P +GI G TG+GKS++L+ + R
Sbjct: 308 P--EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWE 895
++ G I + K L R L ++ Q+P LFS TV N+ P + + ++
Sbjct: 366 DVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRP--DATQQEIEH 423
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
A + D I R G D +V E G S GQ+Q +S++RALL ++IL+LD+A +AVD
Sbjct: 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 956 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
RT+ I +R+ + T++I AHRL+ + + IL++ G + + ++L G
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSG 541
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 136 bits (346), Expect = 3e-33
Identities = 67/217 (30%), Positives = 121/217 (55%), Gaps = 13/217 (5%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS-AVIRGTVAY 231
+N +P G +A+VG +G GKTSL++A+LG LP + + R +++
Sbjct: 368 PLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 232 VPQVSWIFNATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 290
V Q + + T+RDN+L G + ++A++ + L LLP G T IG++ +S
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 350
GQ QR+++ARA+ + + D+P ++LDAH + V + + +T ++VT+QL
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM-QALNAASRRQTTLMVTHQLED 546
Query: 351 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387
L+Q D+I ++ +G + ++G + +LS G LF L+ +
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 5e-33
Identities = 86/334 (25%), Positives = 158/334 (47%), Gaps = 21/334 (6%)
Query: 68 QFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMIT 127
Q + A ILN V ++ G + ++ G LT + T +L + PL + N+
Sbjct: 382 QAIKAVTKLILN-----VVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQP 436
Query: 128 QVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 187
++ A V+ R+ E L + + + I S+ L +I+L
Sbjct: 437 KLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLT 496
Query: 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------SAVIRGTVAYVPQV 235
I + S IVG +G GK++L ++G S +R + Y+PQ
Sbjct: 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE 556
Query: 236 SWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293
+IF+ ++ +N+L G+ A ++ ++ D++ +P G TE+ E G +ISGGQ
Sbjct: 557 PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ 353
KQR+++ARA+ ++S V I D+ S LD +++ + + L KT + V ++L Q
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQ 674
Query: 354 VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387
D+II++ G + E+G+ ++L + + L+ N
Sbjct: 675 SDKIIVLDHGKIIEQGSHDELLDRNGFYASLIHN 708
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-32
Identities = 93/356 (26%), Positives = 161/356 (45%), Gaps = 35/356 (9%)
Query: 658 KAYDRMADINGKS-MDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAEN 716
A DR ++ S + + +LV +G +LAI EI G+MI GS
Sbjct: 219 AASDRAGMLSNLSKYFRIVLQSLV-LGLGAYLAIDGEITPGMMI----------AGS--- 264
Query: 717 QEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 776
+L+ AL + S + A +R+ + +
Sbjct: 265 ---------ILVGRALAPIDGAIGGWKQFS---GARQAYKRLNELLANYPSRDPAMPLPE 312
Query: 777 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836
P G + E+V + P L G+SF++ + + I+G +G+GKS++ +
Sbjct: 313 P------EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG 366
Query: 837 IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD-LWE 895
I G + +DG D+ ++ K +G +PQ LF GTV N+ F E++D + + E
Sbjct: 367 IWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIE 426
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
A + A + + I R G D + G S GQRQ ++L+RAL K++VLDE + +D
Sbjct: 427 AAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLD 486
Query: 956 VRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010
+ AL + + T+++I HR + + D+IL+L GR+ + +E+L+
Sbjct: 487 EEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 7e-32
Identities = 59/215 (27%), Positives = 101/215 (46%), Gaps = 39/215 (18%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+ +V Y + VL LS + +K+ ++GR+G+GKS++L L ++ ++G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
+DG ++ L ++ ++ Q P LF T+R NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
G FS G+RQ L+L+R LL+ + I++LDE T +D T+ + I
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI 141
Query: 967 REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
E K T++ I H L I D+IL L++G+++
Sbjct: 142 FEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 122 bits (310), Expect = 1e-31
Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 20/221 (9%)
Query: 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847
+ +++ Y P L +S TI + V IVG G+GKS++L L ++ G +L+
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 848 DGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVR----FNLDPFSEHSDADLWEALERAH 901
DG D+ K L +LR+ +G++ Q+P F TV F L+ + ++ E +E A
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG-LPEEEIEERVEEA- 118
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDA 960
L+ +GL+ + S GQ+Q ++++ L IL+LDE TA +D
Sbjct: 119 LEL------VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 961 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGR 998
L++ K ++ E K T++I+ H L+ +++ DR+++L+ G+
Sbjct: 173 LLELLKKLKAEGK--TIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 119 bits (302), Expect = 5e-31
Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 46/216 (21%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ ++ RY L +S T+ + G++G GAGK++++ + +++ + G I
Sbjct: 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 905
+ G DI K ++++ +G +P+ P L+ TVR NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
S G +Q L+L++ALL ++L+LDE T+ +D + +
Sbjct: 96 ------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 966 IREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 999
+RE K T+L+ +H L CDR+ +L++GR+
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 8e-31
Identities = 111/411 (27%), Positives = 192/411 (46%), Gaps = 47/411 (11%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAM----DAVKCYAWENSFQSKVQNV 56
M PV + ++ R+ K + + +G + + VK + + + V
Sbjct: 163 MLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAV 222
Query: 57 RNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARA-FTSLSLFAVL 115
N R A + + S S P+ + S + +L L A+A + F
Sbjct: 223 SNRNR---RLAMKMTSAGSI---SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAF 276
Query: 116 RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI--LLPNPP-LTSGLPA-------ISI 165
+ L + + N N ++R L A E + LL +PP +G A +
Sbjct: 277 ITAMIALIRPLKSLTNVNAPMQRG---LAAAESLFTLLDSPPEKDTGTRAIERARGDVEF 333
Query: 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-----------LGE 214
RN F + +RP L +I+L I G VA+VG +G GK++L++ + L +
Sbjct: 334 RNVTFRYPG-RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392
Query: 215 LPPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDL 271
++D + A +R VA V Q +FN T+ +NI +G + A E+A+ Q +
Sbjct: 393 GHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFV 452
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---F 328
D LP G T IGE GV +SGGQ+QR+++ARA+ ++ + I D+ SALD R V
Sbjct: 453 DKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL 512
Query: 329 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNG 378
+R ++ G+T +++ ++L + + DRI+++ +G + E GT +L + NG
Sbjct: 513 ERLMQ----GRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 8e-31
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 21/238 (8%)
Query: 163 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD- 220
I+ + F + K + P +L NI+L I G +V IVG +G GK++L + P +
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 221 -----------ASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 268
A +R V V Q + +FN ++RDNI A E+ I+ L
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNI--ALADPGMSMERVIEAAKLAG 116
Query: 269 -HDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
HD LP G T +GE+G +SGGQ+QR+++ARA+ N + IFD+ SALD
Sbjct: 117 AHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 327 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
+ R + +G+T +++ ++L + DRII++ +G + E+G+ ++L L+ L
Sbjct: 177 IM-RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
++ +++ + + L +SF+I + +G+VG +G+GKS++ + +++ G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 845 ILIDGFDIAKFG---LMDLRKILGIIPQ------SPVLFSGTVRFNL-DPFSEHSDADLW 894
I+ DG D+ K RK + ++ Q +P + T+ + +P H
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 895 EALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
EA + A L + +GL +V E S GQRQ ++++RAL K+L+ DE T+
Sbjct: 119 EARKEAVLLLLVG---VGLPEEVLNRYPHE-LSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 953 AVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEY 1002
A+DV A I K ++EE T+L I H L + DR+ ++ +G+++E
Sbjct: 175 ALDVSVQAQILDLLKKLQEELG-LTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-30
Identities = 104/406 (25%), Positives = 187/406 (46%), Gaps = 47/406 (11%)
Query: 11 RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCY------------AWENSFQSKVQNVRN 58
R++KL++E R E L A+ V+ + A E ++++ Q +R
Sbjct: 181 RVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR- 239
Query: 59 DELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPAR--AFTSLSLFAVLR 116
+A A + +I V V+ G ++ G ++ F ++
Sbjct: 240 ------TRALLTAIVIVLVFGAI---VGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGS 290
Query: 117 FPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA---ISIRNGYFSWD 173
L + ++ A + +R+ E L AE I P P T +P I F++
Sbjct: 291 IG--TLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYP 348
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA------------ 221
++ ++P L +NL + G VA+VG +G GK++L +L P S
Sbjct: 349 ARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLD 408
Query: 222 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGD 278
A +R +A VPQ +F A+V +NI +G A E+ H + LP G
Sbjct: 409 PAELRARMALVPQDPVLFAASVMENIRYGRP--DATDEEVEAAARAAHAHEFISALPEGY 466
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
T +GERGV +SGGQ+QR+++ARA+ ++ + + D+ SALDA Q+ + + + G
Sbjct: 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-SEQLVQQALETLMKG 525
Query: 339 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
+T +++ ++L + + DRI+++ +G + +GT +L G L+ +L
Sbjct: 526 RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-30
Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 33/242 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E++ + Y PVL +S ++ + ++G GAGKS++L + +++ G I
Sbjct: 5 IEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDAD 892
I G + K R +G +PQ + F TV+ ++
Sbjct: 63 IFGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
+ EALER ++D D Q+ E S GQ+Q + L+RAL + +L+LDE
Sbjct: 120 VDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 953 AVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
VDV I ++E + T+L++ H L ++ DR++ L+ ++ PEE+L+
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227
Query: 1011 NE 1012
E
Sbjct: 228 EE 229
|
Length = 254 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-30
Identities = 74/243 (30%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 787 IKFEDVVLRY---RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
I+ E+V + L +S IP + GI+G +GAGKS++L + + G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 844 RILIDGFDIA---KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 899
+ +DG D+ + L LR+ +G+I Q L S TV N+ LE
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVA-----------FPLEL 110
Query: 900 AHL-KDAI--RRNSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
A + K I R L GL + S GQ+Q ++++RAL KIL+ DEAT+
Sbjct: 111 AGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 953 AVDVR-TDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
A+D T ++++ K I E T+++I H + + CDR+ +LD GR++E T E+
Sbjct: 171 ALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
Query: 1009 LSN 1011
+N
Sbjct: 230 FAN 232
|
Length = 339 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 6e-30
Identities = 53/213 (24%), Positives = 87/213 (40%), Gaps = 58/213 (27%)
Query: 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847
+ E++ RY L +S T+ + V +VG G+GKS++L + +++ G ILI
Sbjct: 1 EIENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 848 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 907
DG DIAK L
Sbjct: 59 DGKDIAK-----------------------------------------------LPLEEL 71
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
R +G Q S GQRQ ++L+RALL +L+LDE T+ +D + + + +R
Sbjct: 72 RRRIGYVPQ-------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLR 124
Query: 968 EEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR 998
E + T++I+ H DR+++L G+
Sbjct: 125 ELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 7e-30
Identities = 80/268 (29%), Positives = 132/268 (49%), Gaps = 31/268 (11%)
Query: 128 QVVNANVSLKRMEEFL----LAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLN 183
Q A + KR+ E L + + LP P + ++I ++PTL
Sbjct: 283 QFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIVP------PGGKKPTLRG 336
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG--------TVAY 231
I+ + G +AI+G +G GK++L ++G PP S + A ++ + Y
Sbjct: 337 ISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGY 396
Query: 232 VPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQ--HDLDL-LPGGDVTEIGERGV 287
+PQ +F TV +NI FG +P EK I+ L H+L L LP G T IG G
Sbjct: 397 LPQDVELFPGTVAENIARFGENADP---EKIIEAAKLAGVHELILRLPDGYDTVIGPGGA 453
Query: 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTN 346
+SGGQ+QR+++ARA+Y + + + D+P S LD G Q I + G T V++T+
Sbjct: 454 TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE-EGEQALANAIKALKARGITVVVITH 512
Query: 347 QLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+ L VD+I+++ +G + G +++
Sbjct: 513 RPSLLGCVDKILVLQDGRIARFGERDEV 540
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 8e-30
Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849
E++ + Y VL LS +I + VGI+G GAGKS++L TL +++ G IL+DG
Sbjct: 3 ENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 850 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER---AHLKDAI 906
D+A +L + + +PQ ALE AHL D
Sbjct: 61 KDLASLSPKELARKIAYVPQ--------------------------ALELLGLAHLAD-- 92
Query: 907 RR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
R N L S G+RQ + L+RAL + IL+LDE T+ +D+ + +
Sbjct: 93 RPFNEL-------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 966 IREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVL 1000
+R + ++ H LN DR++LL GR++
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 8e-30
Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 27/269 (10%)
Query: 764 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPS 814
+P I + + ++ RY + +SF +
Sbjct: 258 VPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 815 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKFGLMDLRKILGIIPQSPV 872
+ +G+VG +G+GKS++ L ++ G I+ DG D+ L LR+ + ++ Q P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377
Query: 873 LF---SGTVRFNL-DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDAQVSEAGENFSVG 927
TV L +P H E R A L + + LD E S G
Sbjct: 378 SSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE----LSGG 433
Query: 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEFKSCTMLIIAHRLN 983
QRQ ++++RAL K+L+LDE +A+DV A L++ ++EE T L I+H L
Sbjct: 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELG-LTYLFISHDLA 491
Query: 984 TIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+ DR+ ++ GR++E E++ N
Sbjct: 492 VVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 70/238 (29%), Positives = 119/238 (50%), Gaps = 27/238 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 842
I+ D+ + Y + L +S IP + ++G +G GKS++L L R+ +L
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 843 -GRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDA 891
G +L+DG DI +++LR+ +G++ Q P F G++ N+ E D
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 892 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
+ EAL +A L D ++ L S GQ+Q L L+RAL ++L+LDE T
Sbjct: 119 RVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEPT 169
Query: 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 1008
+A+D + A I++ I E K T++I+ H + DR L +GR++E+ E++
Sbjct: 170 SALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 63/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E++ RY L +S I ++V ++G G+GKS++L L +++ G +L
Sbjct: 4 IEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 847 IDGFDI-AKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD------PFSEHS-DADLWEA 896
+DG D ++ L++LR+ +G++ Q+P LF TV + + + EA
Sbjct: 63 VDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA 122
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
LE L++ + R L S GQ+Q ++++ L +IL+LDE TA +D
Sbjct: 123 LELVGLEELLDRPPFNL-----------SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDP 171
Query: 957 RTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ + + +++ E T++I+ H L +++ DR+++LD G++L P E+ ++
Sbjct: 172 KGRRELLELLKKLKEEGGK-TIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 787 IKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
I ED + E L ++ +P + V IVG G+GKSS+L+ L + ELE+
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL--LGELEK- 57
Query: 844 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 903
G + + + + Q P + +GT+R N+ + + ++ L+
Sbjct: 58 ----------LSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALE 107
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 962
+ G ++ E G N S GQ+Q +SL+RA+ + I +LD+ +AVD +
Sbjct: 108 PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIF 167
Query: 963 QKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 998
+ I + T +++ H+L + D+I++LD+GR
Sbjct: 168 ENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-28
Identities = 104/408 (25%), Positives = 186/408 (45%), Gaps = 46/408 (11%)
Query: 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRK 66
F+ ++K ++ +R+ + E + ++ +K A E FQ++ ++ +
Sbjct: 297 FVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR 356
Query: 67 AQFLAACNSFILNSIPVLVTVVS--FGMFTLLGGDLTPAR--AFTSLSLFAVLRFPLFML 122
L + I L + FG ++GG L+P + AF L+ P+ L
Sbjct: 357 VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQ--PVLRL 414
Query: 123 PNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS-----KAE 177
+ ++L+R+ + L + P P ++GL A+ G ++++ +
Sbjct: 415 AQLWQDFQQTGIALERLGDILNS------PTEPRSAGLAALPELRGAITFENIRFRYAPD 468
Query: 178 RPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAM-----------------LGELPPVS 219
P +L N+NLDI G + IVG +G GK++L + L P
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528
Query: 220 DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPG 276
+R + V Q + +F+ ++RDNI + P +E I L D LP
Sbjct: 529 -----LRRQMGVVLQENVLFSRSIRDNIALCNPGAP--FEHVIHAAKLAGAHDFISELPQ 581
Query: 277 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 336
G TE+GE+G N+SGGQ+QR+++ARA+ N + IFD+ SALD + R +R
Sbjct: 582 GYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE-SEALIMRNMREIC 640
Query: 337 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
G+T +++ ++L + DRII++ +G + E G E+L L+ +L
Sbjct: 641 RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-28
Identities = 72/275 (26%), Positives = 125/275 (45%), Gaps = 28/275 (10%)
Query: 95 LLGGDLTPAR----AFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 150
+ G L P L+ F LP Q+ + +R+ E L A +
Sbjct: 263 VADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDAAGPVA 318
Query: 151 LPNPP----LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 206
+ P + G P + +R+ + P L ++LD+P G VAI+G +G GK++
Sbjct: 319 EGSAPAAGAVGLGKPTLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKST 376
Query: 207 LISAMLGELPP------VSDASA------VIRGTVAYVPQVSWIFNATVRDNILFGSA-F 253
L++ + G L P + +R V+ Q + +F+ TVR+N+
Sbjct: 377 LLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA 436
Query: 254 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 313
A++ L L LP G T +GE G +SGG++QR+++ARA+ +++ + + D
Sbjct: 437 TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD 496
Query: 314 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348
+P LDA ++ + LSG+T VL+T+ L
Sbjct: 497 EPTEHLDAETADELL-EDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847
+ ED+ + Y PVL +SF + P + + IVG GAGKS++L + +++ G I +
Sbjct: 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 848 DGFDIAKFGLMDLRKILGIIPQSPVL---FSGTVR-----------FNLDPFSEHSDADL 893
G + K RK +G +PQ + F +VR S+ A +
Sbjct: 59 FGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV 113
Query: 894 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953
EALER L + R Q+ E S GQ+Q + L+RAL++ +L+LDE A
Sbjct: 114 DEALERVGLSELADR-------QIGEL----SGGQQQRVLLARALVQDPDLLLLDEPFAG 162
Query: 954 VDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLD 995
VD +T I + +RE + T+L++ H L +++ DR+LLL+
Sbjct: 163 VDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-28
Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 39/341 (11%)
Query: 77 ILNSIPVLVTVVSFGMFTLLG------GDLTPAR--AFTSLSLFAVLRF--PLFMLPNMI 126
IL +P L+T ++ + ++G G LT AF SL + F P+ L
Sbjct: 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSL----MSSFLEPVNNLVGFG 433
Query: 127 TQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA--------ISIRNGYFSWDSKAER 178
+ L R+++ L LL + + +RN F + S E
Sbjct: 434 GTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEP 492
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAML----GEL-----PPVSDASAVIR 226
P + N +L + G VA+VGG+G GK++ L++ + GE+ P V+
Sbjct: 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552
Query: 227 GTVAYVPQVSWIFNATVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
+VA V Q ++F TVRDN+ L+ A +A ++ + PGG E+ E
Sbjct: 553 NSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEG 612
Query: 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 345
G N+SGGQ+QR+ +ARA+ N + I D+ SALD + + D R G T ++V
Sbjct: 613 GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVA 669
Query: 346 NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
++L + D II++ G V + GT E+L G + +L+
Sbjct: 670 HRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 75/247 (30%), Positives = 119/247 (48%), Gaps = 39/247 (15%)
Query: 787 IKFEDV--VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 842
I+ ++V V L +S ++P + GI+GR+GAGKS TL R + LER
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKS----TLIRCINGLERP 57
Query: 843 --GRILIDGFDIAKFGLMDLRKI---LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE-A 896
G +L+DG D+ +LRK +G+I Q FNL S + +
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ---------HFNL--LSSRTVFENVALP 106
Query: 897 LERAHLKDAIRR-------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
LE A + A +GL+ + S GQ+Q + ++RAL K+L+ DE
Sbjct: 107 LEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDE 166
Query: 950 ATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004
AT+A+D T AL++ I E T+++I H + + CDR+ +++ G V+E T
Sbjct: 167 ATSALDPETTQSILALLRD-INRELG-LTIVLITHEMEVVKRICDRVAVMEKGEVVEEGT 224
Query: 1005 PEELLSN 1011
EE+ +N
Sbjct: 225 VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 16/231 (6%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ + + VL G+ + + + I+G +G+GKS++L + ++ + G +L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 847 IDGFDIAKFG---LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 901
IDG DI+ L LR+ +G++ QS LF TV N+ P EH+ E E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVL 118
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDA 960
K ++GL S G ++ ++L+RAL ++L+ DE TA +D + +
Sbjct: 119 EK----LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 961 LIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+ +++++E T +++ H L+T DRI +L G+++ TPEEL
Sbjct: 175 IDDLIRSLKKELG-LTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 5e-27
Identities = 100/403 (24%), Positives = 182/403 (45%), Gaps = 43/403 (10%)
Query: 10 SRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQF 69
R Q L++E + K + E L+ M V+ +A E S+ + + L ++
Sbjct: 323 KRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382
Query: 70 LAACNSFI--LNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNM-I 126
A + + + + V V+ GG L +S +L + F+L +
Sbjct: 383 AYAGYLWTTSVLGMLIQVLVLY------YGGQLVLTGKVSSGNLVS------FLLYQEQL 430
Query: 127 TQVVNANVSL-KRMEEFLLAEEKIL-----LPNPPLTSGLPA------ISIRNGYFSWDS 174
+ V + M + + A EK+ PN PLT L I ++ FS+ +
Sbjct: 431 GEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGLIEFQDVSFSYPN 490
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL----PPVSDASA 223
+ + P L + + G +VA+VG +G GK+++ + + G++ P+
Sbjct: 491 RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550
Query: 224 V-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD-LDLLPGGDVTE 281
+ VA V Q +F+ +VR+NI +G P A + HD + P G TE
Sbjct: 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTE 610
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 341
+GE+G +SGGQKQR+++ARA+ V I D+ SALDA + + + + +T
Sbjct: 611 VGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTV 667
Query: 342 VLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
+L+ ++L + + D+I+++ +G V E GT + L + ++ L
Sbjct: 668 LLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 47/275 (17%)
Query: 128 QVVNANVSLKRMEEFL----LAEEKILLPNPP-------LTSGLPAISIRNGYFSWDSKA 176
Q V A S KR+ E L A E++ LP P LT+ P
Sbjct: 301 QFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPG-------------Q 347
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA----SAVIRG----- 227
++P L I+ + G + I+G +G GK++L ++G PP S + A +R
Sbjct: 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ 407
Query: 228 ---TVAYVPQVSWIFNATVRDNIL-FGSAFEPAR-YE--KAIDVTSLQHDLDL-LPGGDV 279
+ Y+PQ +F+ T+ +NI FG +P + E + V H+L L LP G
Sbjct: 408 LGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGV----HELILRLPQGYD 463
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSG 338
T IGE G +SGGQ+QR+++ARA+Y + + + D+P S LD+ G I + G
Sbjct: 464 TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS-EGEAALAAAILAAKARG 522
Query: 339 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 373
T V++ ++ L+ VD+I+++ +G + G E+
Sbjct: 523 GTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-26
Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 19/250 (7%)
Query: 787 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----L 840
++ E++ + + P + +SF + P + +GIVG +G+GKS++ L ++ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 841 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPV-LFSG--TVRFNLD-PFSEHSDAD 892
G +++DG D+ ++RK+ G +I Q P+ + T+ + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
EA +RA + + + L + S G RQ + ++ AL + K+L+ DE T
Sbjct: 126 RAEARKRA--VELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 953 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009
A+DV T A I +++ +L I H L + + DR++++ G ++E EE+L
Sbjct: 184 ALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243
Query: 1010 SNEGSSFSKM 1019
SN +++
Sbjct: 244 SNPQHPYTRG 253
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 63/239 (26%), Positives = 115/239 (48%), Gaps = 42/239 (17%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 219
I +R S+ R L ++LD+ G ++AI+G +G GK++L+ ++G L P S
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 220 -----DASAV-------IRGTVAYVPQVSWIFNA-TVRDNILFG----SAFEPARYEK-- 260
D S + +R + + Q +F++ TV +N+ F + +
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 261 --AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
++ L+ DL P +SGG K+RV++ARA+ + ++ ++D+P +
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 319 LDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
LD + V D IR + G T ++VT+ L + DRI ++++G + EGT E+L
Sbjct: 167 LDP-IASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 37/248 (14%)
Query: 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 219
L I N F + + L +++L+I G V ++G G GK++L+ + G L P S
Sbjct: 1 LRMIEAENLSFRY--PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS 58
Query: 220 -------------DASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEP-------AR 257
+ +R V V Q +F TV D + FG R
Sbjct: 59 GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
+A+++ L+ LD P N+SGGQKQRV++A + ++ + D+P +
Sbjct: 119 VAEALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 318 ALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 375
LD R++ + + E GKT ++VT+ L + + DR++++ +G + +G ++
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 376 NNGELFQK 383
N+ EL
Sbjct: 228 NDAELLLA 235
|
Length = 235 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 38/224 (16%)
Query: 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---- 219
++N FS+ RP L +I+L I G V IVG G GK++L+ + G L P S
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 220 --------DASAVIRGTVAYVPQ--VSWIFNATVRDNILFG------SAFE-PARYEKAI 262
+ +R V V Q F TV + + FG E R E+A+
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
++ L+ D P +SGGQKQRV++A + + D+ + D+P + LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 323 VGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEG 363
R++ + ++ +L GKT ++VT+ L L ++ DR+I++ +G
Sbjct: 169 GRRELLEL-LK-KLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 43/248 (17%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 219
P I + N S+ + RP L +I+L + G + A++G G GK++L+ A+LG L P S
Sbjct: 3 PMIEVENLTVSYGN---RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59
Query: 220 --------DASAVIRGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPAR 257
R + YVPQ V F TV+D +L G + + +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK 119
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
++A++ ++ D +IGE +SGGQKQRV +ARA+ N D+ + D+P +
Sbjct: 120 VDEALERVGMEDLRD-------RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 318 ALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374
+D G++ ++ EL GKT ++VT+ L + DR+I ++ ++ G E++
Sbjct: 169 GVDVA-GQKEIYDLLK-ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA-SGPPEEV 225
Query: 375 SNNGELFQ 382
L +
Sbjct: 226 LTEENLEK 233
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-26
Identities = 65/221 (29%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 787 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
I + + R+R V + G+SFT+ P + G++G GAGK++ L L ++E + G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 903
+DGFD+ K R++ G + S L+ T R NL+ F A L+ L+ L
Sbjct: 62 ATVDGFDVVKEPAEARRRL-GFVSDSTGLYDRLTARENLEYF-----AGLY-GLKGDELT 114
Query: 904 DAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
+ + LG++ + FS G RQ ++++RAL+ +L+LDE T +DV
Sbjct: 115 ARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 962 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL 1000
+++ IR+ +L H + + CDR+++L GRV+
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 59/222 (26%), Positives = 106/222 (47%), Gaps = 14/222 (6%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 219
I +N + P L NI+ I G V IVG TG GK+SL+ A+ + S
Sbjct: 1 GDIEFKNVSLRY-RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 220 -------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268
D S + +R ++ +PQ +F+ T+R N+ + +A++ L+
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLK 119
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
++ LPGG T + E G N+S GQ+Q + +ARA+ S + + D+ +++D +
Sbjct: 120 EFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQ 179
Query: 329 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370
+ IR T + + ++L + DRI+++ +G V E +
Sbjct: 180 -KTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 155 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-- 212
P G ++IR F++ + + P L N+N + G ++ I G TG GK++L+S +
Sbjct: 308 PEGRGELDVNIRQ--FTY-PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH 364
Query: 213 -----GELP----PVSDASA-VIRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKA 261
G++ P++ R +A V Q ++F+ TV +NI G E
Sbjct: 365 FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHV 424
Query: 262 IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+ S+ D+ LP G TE+GERGV +SGGQKQR+S+ARA+ N+++ I DD LSA+D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484
Query: 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376
Q+ +R G+T ++ ++L L++ I+++ G + + G + L+
Sbjct: 485 RTEHQIL-HNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+L G+S T+P + V ++GR GAGK+++L T+ ++ G I DG DI +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITG---LPPH 70
Query: 862 KI--LGI--IPQSPVLFSG-TVRFNLD-----PFSEHSDADLWEALER-AHLKDAIRRNS 910
+ GI +P+ +F TV NL A L E LK+ RR
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE--RRKQ 128
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA-----VDVRTDALIQKT 965
L S G++Q+L+++RAL+ R K+L+LDE + V+ +A+ +
Sbjct: 129 L---------AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI--RE 177
Query: 966 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+R+E T+L++ ++ DR +L+ GRV+ T ELL++
Sbjct: 178 LRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 798 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857
P L+GLS I D V ++G GAGKS++LN + ++ G+ILIDG D+ K +
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 858 MDLRKILGIIPQSPVLFSG---TVRFNLDPFSEHSDADLWE-------------ALERAH 901
+L + Q P+ + T+ NL L E R+
Sbjct: 76 AKRANLLARVFQDPLAGTAPELTIEENL---------ALAESRGKKRGLSSALNERRRSS 126
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DA 960
++ + R LGL+ ++S+ S GQRQ LSL A L KIL+LDE TAA+D +T +
Sbjct: 127 FRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 961 LIQKT--IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGR-VLEYDTPE 1006
+++ T I EE K T L++ H + +D +R+++L SG+ VL+ E
Sbjct: 187 VMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEE 235
|
Length = 263 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-25
Identities = 86/311 (27%), Positives = 153/311 (49%), Gaps = 31/311 (9%)
Query: 98 GDLTPARAFTSLSLFAVL-RFPLFMLP-----NMITQVVNANVSLKRMEEFLLAEEKILL 151
G A +L +FA L F M P + QV+ S +R+ E + ++
Sbjct: 271 GGNAQPGALIALFVFAALAAFEALM-PVAGAFQHLGQVIA---SARRINEITEQKPEVTF 326
Query: 152 P-NPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS- 209
P + ++++ N F++ +P L ++L I G VA++G TG GK++L+
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 210 ------AMLGEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258
GE+ P++D S A +R ++ V Q +F+AT+RDN+L A A
Sbjct: 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLL--AAPNASD 443
Query: 259 EKAIDV---TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315
E I+V L+ L+ G + +GE G +SGG+++R+ +ARA+ ++ + + D+P
Sbjct: 444 EALIEVLQQVGLEKLLEDDKGLN-AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEP 502
Query: 316 LSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 375
LDA RQ+ + KT +++T++L L Q DRI ++ G + E+GT ++L
Sbjct: 503 TEGLDAETERQIL-ELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
Query: 376 NNGELFQKLME 386
+ +L +
Sbjct: 562 AQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-25
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 56/216 (25%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 219
+ + N F + AE P L N++ I G +AI+G +G GK++L +LG L P S
Sbjct: 1 LEVENVSFRYPG-AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 220 --DASAV-------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 270
D + + + V Y+PQ +F+ ++ +NIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
SGGQ+QR+ +ARA+Y N + + D+P S LD G + ++
Sbjct: 98 -------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLD-VEGERALNQ 137
Query: 331 CIRG-ELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 365
I + +G TR+++ ++ L+ DRI+++ +G V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-25
Identities = 43/249 (17%), Positives = 85/249 (34%), Gaps = 6/249 (2%)
Query: 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSF-GQVLVTLA 521
+LI +L L + L + D L I + Q L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 522 NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 581
+ Y KRL A+L IL PM FF TN +G + +R D+ I + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 582 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 641
+F ++ ++ F+++ ++ +L L R++ R + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 642 AQFGEALNGLSTIRAYKAYDRMAD-INGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI 700
+ E+L+G+ T++A+ + + + D +++ L
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKK-AITAGLSFGITQLISYLSY 239
Query: 701 WLTATFAVV 709
L F
Sbjct: 240 ALALWFGAY 248
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 5e-25
Identities = 97/380 (25%), Positives = 176/380 (46%), Gaps = 41/380 (10%)
Query: 31 NEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSF 90
N I A A+K F + + + + L W+ A L S I ++ ++
Sbjct: 212 NRIEAETSALK------QFTNNLLSAQYPVLDWWALASGLNRMASTI-----SMMCILVI 260
Query: 91 GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL 150
G ++ G+L+ + +L L + ITQ+ A L E+F E+ +
Sbjct: 261 GTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKL---EDFFDLEDSVF 317
Query: 151 LPNPPLTSG-LP----AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT 205
P + LP A+ R+ F + + ++ + +++ + G VAIVG TG GKT
Sbjct: 318 QREEPADAPELPNVKGAVEFRHITFEFANSSQ--GVFDVSFEAKAGQTVAIVGPTGAGKT 375
Query: 206 SLISAMLGELPPVS--------DASAV----IRGTVAYVPQVSWIFNATVRDNILFG--S 251
+LI+ + P D + V +R ++A V Q + +FN ++R+NI G
Sbjct: 376 TLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG 435
Query: 252 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311
A + YE A + L G D T +GERG +SGG++QR+++ARA+ N+ + +
Sbjct: 436 ATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNRLSGGERQRLAIARAILKNAPILV 494
Query: 312 FDDPLSALDAHVGRQVFDR--CIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369
D+ SALD +V + +R +T ++ ++L + D ++ + +G + E+G
Sbjct: 495 LDEATSALDVETEARVKNAIDALR---KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKG 551
Query: 370 TFEDLSNNGELFQKLMENAG 389
+F++L F KL+ +G
Sbjct: 552 SFQELIQKDGRFYKLLRRSG 571
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-25
Identities = 68/239 (28%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 786 SIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
+ ++ + Y L+ +S I + +GIVG +G+GKS++ L + + G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 844 RILIDGFDIA-KFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 902
IL+DG +A K + + ++ Q P +L+P L E L L
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYS-------SLNPRRTVGRI-LSEPLRPHGL 114
Query: 903 KDAIRR-----NSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
+ +R + +GL + + S GQRQ ++++RAL+ K+L+LDE T+A+DV
Sbjct: 115 SKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 957 RTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
A I +++E T L I+H L + CDRI ++D+G+++E EELLS+
Sbjct: 175 SVQAQILNLLLELKKERG-LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 46/218 (21%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ ++V RY + VL+ +S I + V ++G +G+GKS++L + + E + G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 847 IDGFDIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 903
IDG D+ L LR+ +G++ Q LF TV N+
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------- 97
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
+LGL S GQ+Q ++L+RAL +L+LDE T+A+D T ++
Sbjct: 98 ------ALGL-----------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 964 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGR 998
++ T++++ H L+ DR+++L G+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 42/240 (17%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
+ + N F + +P L +++ IP G + I+G G GK++L+ + G L P S
Sbjct: 1 MMLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 221 ------------ASAVIRGTVAYVPQVSWI-FNATVRDNILFG--------SAFEPARYE 259
+ + +AYVPQ F TV + +L G E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
+ L+LL + + +R V+ +SGG++QRV +ARA+ + + + D+P S
Sbjct: 118 IVEEA------LELL---GLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 319 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 373
LD +V + G T V+V LH L+ D +IL+ +G + +GT E+
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMV---LHDLNLAARYADHLILLKDGKIVAQGTPEE 225
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLR 861
++ +S + P + VG++G GAGK+++ N + + G ++ G DI GL
Sbjct: 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT--GLPPHRI 76
Query: 862 KILGIIP--QSPVLFSG-TVRFNL---DPFSEHSDADLWEALERAHLKDAIRR-----NS 910
LGI Q LF G TV N+ L R ++A R
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTIR 967
+GL N S GQ++ L ++RAL + K+L+LDE A ++ T+ L + + +R
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196
Query: 968 EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ T+L+I H + ++ DRI++L+ G V+ TPEE+ +N
Sbjct: 197 DRGGV-TILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
L +SF++ P + G++G GAGK+++ N + + G +L DG DI
Sbjct: 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIA 73
Query: 863 ILGIIP--QSPVLFSG-TVRFNL----------DPFSEHSDADLWEALERAHLKDAIRRN 909
LGI Q P LF TV N+ + + EA ERA + + R
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE--ELLER- 130
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 966
+GL S GQ++ L ++RAL K+L+LDE A ++ T+ L + + +
Sbjct: 131 -VGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 967 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
RE + T+L++ H ++ ++ DR+ +LD GRV+ TP+E+ +N
Sbjct: 190 RE--RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 64/248 (25%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
++ ++V + VL ++ I + V ++G +G GKS++L + + E G I
Sbjct: 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 846 LIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNL--------DPFSEHSDADLWEA 896
LIDG D+ R I ++ Q+ L+ TV N+ P +E D + E
Sbjct: 61 LIDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEI-DKRVKEV 117
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
+ L+ + R L L S GQRQ ++L+RAL+R+ K+ +LDE + +D
Sbjct: 118 AKLLGLEHLLNRKPLQL-----------SGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 957 RTDALIQKTIREEFK------SCTMLIIAHRL--NTIIDCDRILLLDSGRVLEYDTPEEL 1008
+ ++ +R E K T + + H + DRI++++ GR+ + TP EL
Sbjct: 167 K----LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGTPLEL 221
Query: 1009 LSNEGSSF 1016
+ F
Sbjct: 222 YERPANLF 229
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 34/244 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E++ Y P L ++ I P + V I+G +GAGKS++L + R+VE G IL
Sbjct: 2 LEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 847 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 887
++G DI K LRK+ +I + VL + T R L FSE
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSE 120
Query: 888 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947
ALER +GL + + + S GQ+Q ++++RAL ++ +++
Sbjct: 121 EDKERALSALER-----------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILA 169
Query: 948 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004
DE A++D +T + ++ + T++I H+++ DRI+ L +G ++
Sbjct: 170 DEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
Query: 1005 PEEL 1008
P EL
Sbjct: 230 PSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 7e-24
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 41/255 (16%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DASAVIRGTVAY 231
++ ++ G + ++G G GKT+L+ + G L P S A +R + Y
Sbjct: 23 GVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82
Query: 232 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
VPQ ++ TVR+N+ F R E+ +++ L+ +
Sbjct: 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT------ 136
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTR 341
+SGG KQR+S+A A+ + ++ I D+P S LD R+ +R EL+ G
Sbjct: 137 -----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLR-ELAKEGGVT 189
Query: 342 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 397
+L++ H L + DR+I++++G + EGT E+L + ++E E
Sbjct: 190 ILLST--HILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLEL-AEL 246
Query: 398 KEDGETVDNKTSKPA 412
E + V +
Sbjct: 247 LEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 9e-24
Identities = 69/238 (28%), Positives = 126/238 (52%), Gaps = 21/238 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ V + +L G+ +P + + I+G +G+GKS++L + ++ ++G IL
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 847 IDGFDIAKF---GLMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAH 901
IDG DI + L ++RK +G++ Q LFS TV N+ P EH+ E
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL 126
Query: 902 LKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
+K +GL A + + S G R+ ++L+RA+ ++L LDE T+ +D
Sbjct: 127 MK----LELVGLRG---AAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 958 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ +I + IRE + T++++ H L++++ DR+ +L G+V+ TPEELL+++
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD 237
|
Length = 263 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-23
Identities = 96/354 (27%), Positives = 154/354 (43%), Gaps = 50/354 (14%)
Query: 63 WFRKAQFLAACNSFILNSIPVLVTVVSFG--MFTLLGGDLTPAR------AFTSLSLFAV 114
AQ + + +PVL + F + L G L+ AF S S AV
Sbjct: 350 LELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSG-AV 408
Query: 115 LRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL--PNPPLTSGLPAISIRNGYFSW 172
+ L N + ++ +R + L A ++ +P SG AI + F +
Sbjct: 409 TQ-----LSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSG--AIEVDRVTFRY 461
Query: 173 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------- 219
L +++L I G VAIVG +G GK++L+ +LG P S
Sbjct: 462 RPDG-PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520
Query: 220 DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 279
D AV R + V Q + + ++ +NI G+ +A + L D+ +P G
Sbjct: 521 DVQAV-RRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMH 579
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD----AHVGRQVFDRCIRGE 335
T I E G +SGGQ+QR+ +ARA+ + +FD+ SALD A V + +R
Sbjct: 580 TVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVS-ESLER----- 633
Query: 336 LSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
L TR+++ H LS + DRI ++ G V ++GT+++L LF +L
Sbjct: 634 LKV-TRIVIA---HRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 225
+N F++ ++ + L +++ + G + A+VG +G GK++++ A+L ++
Sbjct: 15 QNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLL 73
Query: 226 RG-------------TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD-L 271
G V+ V Q +F +++DNI +G K + H +
Sbjct: 74 DGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFI 133
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
L G TE+GE+G +SGGQKQRV++ARA+ N V I D+ SALDA Q +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQA 192
Query: 332 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 365
+ +T +++ ++L + + D+I+++ G +
Sbjct: 193 LYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 28/232 (12%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I RN F++ K E P L NIN IP G VA+VG +G GK S I+ +L + +
Sbjct: 342 IEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGK-STIANLLTRFYDIDEGE 399
Query: 223 -------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
A +R VA V Q +FN T+ +NI + + +R + + + +
Sbjct: 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQ-IEEAARMAY 458
Query: 270 DLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
+D + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES--- 515
Query: 327 VFDRCIRGELS----GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+R I+ L +T +++ ++L + + D I++V +G + E GT +L
Sbjct: 516 --ERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 22/237 (9%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
IK E+V Y L +SF I + V I+G G+GKS++ L +++ + G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALE-----R 899
IDG I+K L ++RK +GII Q+P F G TV + D+ LE
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATV-----------EDDIAFGLENKKVPP 116
Query: 900 AHLKDAIRRNS--LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
+KD I + +G++ + + +N S GQ+Q ++++ L +I++ DE+T+ +D +
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 958 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
I+K + + + + T++ I H ++ I D++++ G+++ P+E+L+N+
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 2e-23
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 860
L G+S + + V ++GR GAGK+++L T+ +V GRI+ DG DI +
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 861 RKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLWEALER-AHLKDAIRRNSLG 912
R + +P+ +F TV NL E + DL E E LK+ RRN
Sbjct: 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE--RRNQR- 133
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTDALIQKTIREEF 970
AG S G++Q+L+++RAL+ R K+L+LDE + A + + I + I+E
Sbjct: 134 -------AG-TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE--IFEAIKELR 183
Query: 971 KSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
K M L++ ++ DR +L++GR++ T ELL++
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 64/244 (26%), Positives = 114/244 (46%), Gaps = 34/244 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E++ Y P L +S +I P + V ++G +GAGKS++L L +VE G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 847 IDGFDIAKFGLMDLRKI----------LGIIPQSPVL---------FSGTVRFNLDPFSE 887
IDG DI K LR++ +I + VL T R F +
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 888 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947
ALER +GL + + + S GQ+Q ++++RAL+++ K+++
Sbjct: 120 EEKQRALAALER-----------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILA 168
Query: 948 DEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004
DE A++D + + ++ + T+++ H+++ + DRI+ L GR++
Sbjct: 169 DEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
Query: 1005 PEEL 1008
P EL
Sbjct: 229 PAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 4e-23
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 21/231 (9%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ ++ Y+ P + LS + + G++G GAGK++ L L + G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKD 904
I+G+ I R+ LG PQ LF TVR EH L A + K
Sbjct: 61 INGYSIRT-DRKAARQSLGYCPQFDALFDELTVR-------EH----LRFYARLKGLPKS 108
Query: 905 AIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
I+ LGL + ++ S G ++ LSL+ AL+ +L+LDE T+ +D +
Sbjct: 109 EIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 1008
I I E K ++++ H ++ CDRI ++ G++ +P+EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 4e-23
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 787 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
I+ +++ Y L G+S +I + V IVG +G+GKS++LN L + G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 845 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD-------PFSEHSDAD 892
+ +DG DI+K +L +G + QS L T N++ +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
E LER L D + SE S GQ+Q ++++RAL KI++ DE T
Sbjct: 121 AEELLERVGLGDRLNHY-------PSE----LSGGQQQRVAIARALANDPKIILADEPTG 169
Query: 953 AVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999
+D T + + +RE + T++++ H DRI+ L G++
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-23
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 155 PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214
PL SG I I N F++ + L NINL +P VA+VG TG GK++L S ++G
Sbjct: 335 PLQSG--RIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 215 LP-----------PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 262
P P+S S +V+R VA V Q + T N+ G + +A+
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQAL 450
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
+ L LP G T +GE+G N+S GQKQ +++AR + + I D+ + +D+
Sbjct: 451 ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510
Query: 323 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
Q + + T V++ ++L + + D I+++H G E+GT + L
Sbjct: 511 T-EQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561
|
Length = 592 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 7e-23
Identities = 85/339 (25%), Positives = 141/339 (41%), Gaps = 57/339 (16%)
Query: 660 YDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV-------------GGLMIWLTATF 706
+D + + + IR T +G WL++ L I+ GGLM
Sbjct: 275 FDAVLGNWRRLVRAQIRLTWFQLGYG-WLSVVLPILIAAPRYFSGQITFGGLM------- 326
Query: 707 AVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766
Q A Q S++ + I +LRLA +L A + + +
Sbjct: 327 ---QAVGAFGQ--VHSSLSWFIDNYDAIADWRATLLRLAEFR-QALEAAQM--DTEKPAR 378
Query: 767 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 826
+ + G I E++ LR P+ +L L+F + P +++ I G +GAG
Sbjct: 379 TGRRIDFDDNADHG------ITLENLSLR-TPDGQTLLSELNFEVRPGERLLITGESGAG 431
Query: 827 KSSMLNTLFRIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--- 882
K+S+L L + GRI + + +PQ P L GT+R L
Sbjct: 432 KTSLLRALAGLWPWGSGRISMPADSALL------------FLPQRPYLPQGTLREALCYP 479
Query: 883 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942
+ + SDA+L L + L D R LD + S G++Q L+ +R LL +
Sbjct: 480 NAAPDFSDAELVAVLHKVGLGDLAER----LD-EEDRWDRVLSGGEQQRLAFARLLLHKP 534
Query: 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 981
K + LDEAT+A+D T+ + + ++EE T++ + HR
Sbjct: 535 KWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 7e-23
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
V++ +S + + VG++G GAGK++ + +V + G+IL+D DI K M R
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP-MHKR 76
Query: 862 KILGI--IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918
LGI +PQ +F TV N+ E + DL +A + L + +
Sbjct: 77 ARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL--EEFHITHLRD 134
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM--L 976
+ S G+R+ + ++RAL K ++LDE A VD IQ+ I+ K + L
Sbjct: 135 SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK-HLKDRGIGVL 193
Query: 977 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE-------GSSFS 1017
I H + +D CDR ++ G+VL +PEE+++NE G +F
Sbjct: 194 ITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGENFK 242
|
Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 40/238 (16%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG 856
+ G+SF + + +GIVG +G+GKS + + ++ + G IL DG D+
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 857 LMDLRKILG----IIPQS------PVLFSGTVRFNL-DPFSEHSDADLW--------EAL 897
+LRKI G +I Q PV+ T+ + + H E L
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLHGKGLSKKEAKERAIELL 135
Query: 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
E + D RR L + E S G RQ + ++ AL K+L+ DE T A+DV
Sbjct: 136 ELVGIPDPERR----LKSYPHE----LSGGMRQRVMIAMALALNPKLLIADEPTTALDVT 187
Query: 958 TDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
A I K ++ E +++I H L + + DR+ ++ +GR++E EE+ N
Sbjct: 188 VQAQILDLLKELQREKG-TALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 1e-22
Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
I+ +++ Y P L ++ I + V I+G +GAGKS++L +L +V+ G I
Sbjct: 3 MIEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 846 LIDGFDIAKFGLMDLRKIL---GIIPQSP-----------VLFS-----GTVR--FNLDP 884
L +G I K +LRK+ G+I Q VL T R F L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL-- 119
Query: 885 FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944
FS+ A +ALER +G+ + + S GQ+Q ++++RAL+++ KI
Sbjct: 120 FSKEDKAQALDALER-----------VGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLNTIID-CDRILLLDSGRVLE 1001
++ DE A++D + + +++ + + +I H+++ DRI+ L +GR++
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228
Query: 1002 YDTPEEL 1008
EL
Sbjct: 229 DGPASEL 235
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 41/210 (19%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----AVIRGT 228
L +++L + G +A++G +G GKT+L+ + G P + R
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRN 73
Query: 229 VAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
+ V Q +F + TV +NI FG A AR + +++ L+ L+ P
Sbjct: 74 IGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE--- 130
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--- 337
+SGGQ+QRV++ARA+ + + D+PLSALDA + + +R EL
Sbjct: 131 --------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE-----LREELKELQ 177
Query: 338 ---GKTRVLVT-NQLHFLSQVDRIILVHEG 363
G T + VT +Q L+ DRI +++EG
Sbjct: 178 RELGITTIYVTHDQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 2e-22
Identities = 56/246 (22%), Positives = 111/246 (45%), Gaps = 21/246 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ D+ Y + +SF + G++G GAGK+++L + ++ + G++
Sbjct: 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 847 IDGFDIAKFGLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA 905
IDG D + +R+ +G++ + + T R NL F+ + L R +K
Sbjct: 61 IDGVDTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYFARLNG------LSRKEIKAR 113
Query: 906 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
I L L + FS G +Q ++++RAL+ ILVLDE T+ +D+RT +
Sbjct: 114 IAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT----R 169
Query: 964 KTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
+ + K ++ +H + + CDR+++L G V+ + E L +
Sbjct: 170 RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRNL 229
Query: 1018 KMVQST 1023
+ + +
Sbjct: 230 EEIFAF 235
|
Length = 245 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 84/274 (30%), Positives = 129/274 (47%), Gaps = 32/274 (11%)
Query: 135 SLKRMEEFLL-------AEEKILLPNPPLTSGLP-AISIRNGYFSWDSKAERPTLLNINL 186
+L ME+ + P PL A++ N F++D RP L I+
Sbjct: 229 ALTDMEKMFDLLDVEAEVSDAPDAP--PLWPVRLGAVAFINVSFAYD--PRRPILNGISF 284
Query: 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RGTVAYVP 233
IP+G VAIVG +G GK S I +L V+ S I R + VP
Sbjct: 285 TIPLGKTVAIVGESGAGK-STILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343
Query: 234 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDVTEIGERGVNIS 290
Q + +FN T+ NI +G A E+ D LP G T +GERG+ +S
Sbjct: 344 QDTVLFNDTIAYNIKYGR--PDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 350
GG+KQRV++AR + N + I D+ SALD H + + +R +G+T +++ ++L
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAI-QAALREVSAGRTTLVIAHRLST 460
Query: 351 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
+ D II++ G + E GT E+L G L+ ++
Sbjct: 461 IIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-22
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 49/225 (21%)
Query: 163 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 217
+ +RN ++ T L +I+L + G VA+VG +G GK++L+ + G P
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 218 VSDASAVIRGT---VAYVPQVS----WIFNATVRDNILFGSAFEP-------ARYEKAID 263
V + G YV Q W TV DN+ G + R E+ ++
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW---LTVLDNVALGLELQGVPKAEARERAEELLE 117
Query: 264 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHV 323
+ L + P +SGG +QRV++ARA+ + DV + D+P SALDA
Sbjct: 118 LVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 324 GRQVFDRCIRGEL------SGKTRVLVTNQLH---FLSQVDRIIL 359
Q ++ EL +GKT +LVT+ + FL+ DR+++
Sbjct: 167 REQ-----LQEELLDIWRETGKTVLLVTHDIDEAVFLA--DRVVV 204
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 54/225 (24%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ + + Y L LS T+ P + + ++G +G GK+++L + + + G IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAH 901
IDG D+ G+ R+ +G++ Q LF + F L + +A RA
Sbjct: 59 IDGRDVT--GVPPERRNIGMVFQDYALFPHLTVAENIAFGLK------LRGVPKAEIRAR 110
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
+++ + +GL+ ++ S GQ+Q ++L+RAL R +L+LDE +A+D +
Sbjct: 111 VRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 962 IQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003
+++ ++E + T + + H + DRI +++ GR+++
Sbjct: 169 LREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-22
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 24/240 (10%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
A+ + FS+D+ R + +++ + G VAIVG TG GK++LI+ + P S
Sbjct: 334 AVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 220 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
D V +R +A V Q + +FN ++ DNI G A E+
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR--PDATDEEMRAAAERAQ 449
Query: 270 DLDLL---PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
D + P G T +GERG +SGG++QR+++ARA+ + + I D+ SALD +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 327 VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
V + G+T ++ ++L + DRI++ G V E G+F++L G F L
Sbjct: 510 VKAALDELM---KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 81/276 (29%), Positives = 139/276 (50%), Gaps = 33/276 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+FE+V RY + ++ TI + + ++G +G+GK++ L + R++E G IL
Sbjct: 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN------LDPFSEHSDADLWEALER 899
IDG DI+ ++LR+ +G + Q LF TV N L + + A E
Sbjct: 60 IDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--RADEL 117
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
L +GLD SE + + S GQ+Q + ++RAL IL++DE A+D
Sbjct: 118 LDL--------VGLDP--SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 956 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
T +Q K +++E T++ + H ++ + DRI ++D+G +++YDTP+E+L+N
Sbjct: 168 PITRKQLQEEIKELQKELGK-TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
Query: 1012 EGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREE 1047
+ F V+ + + LR L L A+ R E
Sbjct: 227 PANDF---VEDFFGESERGLRLLSLVSVADAVRRGE 259
|
Length = 309 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 7e-22
Identities = 70/247 (28%), Positives = 115/247 (46%), Gaps = 50/247 (20%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---- 217
+ ++N S+ S L ++NLDI G V ++G +G GK++L+ + G P
Sbjct: 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 218 -------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--SAFEP-----ARYEKAI 262
V+D RG +A V Q ++ + TV +NI FG P R ++
Sbjct: 60 ILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
+ L+H L+ P +SGGQ+QRV++ARA+ VF+ D+PLS LDA
Sbjct: 119 KLLGLEHLLNRKPLQ-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 323 VGRQVFDRCIRGELS------GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376
+ R + +R E+ G T + VT H QV+ + L +V +G + +
Sbjct: 168 L-RVL----MRSEIKKLHERLGTTTIYVT---H--DQVEAMTLADRIVVMNDGRIQQVGT 217
Query: 377 NGELFQK 383
EL+++
Sbjct: 218 PLELYER 224
|
Length = 338 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 7e-22
Identities = 67/245 (27%), Positives = 119/245 (48%), Gaps = 29/245 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+FE+V RY ++ L+ I + + ++G +G+GK++ + + R++E G I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN--LDPFSEHSDADLWEALERAHLK 903
IDG DI + ++LR+ +G + Q LF TV N L P W K
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK-----WP-------K 107
Query: 904 DAIRRNSLGLDAQVSEAGENF--------SVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
+ IR + L A V F S GQ+Q + ++RAL +L++DE A+D
Sbjct: 108 EKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD 167
Query: 956 VRTDALIQ---KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
T +Q K +++E T++ + H ++ DRI ++ +G +++ TP+E+L +
Sbjct: 168 PITRDQLQEEFKRLQQELGK-TIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
Query: 1012 EGSSF 1016
+ F
Sbjct: 227 PANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 9e-22
Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 65/301 (21%)
Query: 785 GSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
G I+ DV RY RP +P + L+F+ IVG TG+GKS++++ L R +L+
Sbjct: 1164 GKIEIMDVNFRYISRPNVP-IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 843 GRILI--------------------------------------DGFDIAKF--------- 855
++ G D F
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 856 -------GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD-ADLWEALERAHLKDAIR 907
L DLR + I+ Q P+LF+ ++ N+ E + D+ A + A + + I
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE 1342
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
D V G++ S GQ+Q ++++RALLR KIL+LDEAT+++D ++ LI+KTI
Sbjct: 1343 SLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIV 1402
Query: 968 E--EFKSCTMLIIAHRLNTIIDCDRILLLDS-----GRVLEYDTPEELLSNEGSSFSKMV 1020
+ + T++ IAHR+ +I D+I++ ++ V + T EELLS + + K V
Sbjct: 1403 DIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYV 1462
Query: 1021 Q 1021
+
Sbjct: 1463 K 1463
|
Length = 1466 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 74/246 (30%), Positives = 123/246 (50%), Gaps = 45/246 (18%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
P I +R S+ +R L ++LD+P G ++AI+GG+G GK++L+ +LG L P D
Sbjct: 7 PLIEVRGVTKSF---GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--D 61
Query: 221 ASAV-----------------IRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAI 262
+ IR + + Q +F++ TV +N+ F P R +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF-----PLREHTKL 116
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVN-------ISGGQKQRVSMARAVYSNSDVFIFDDP 315
SL +L L+ + +G RG +SGG ++RV++ARA+ + ++ D+P
Sbjct: 117 P-ESLIRELVLM---KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 316 LSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTF 371
S LD + V D IR EL+ G T ++VT+ L L+ DR+ ++ +G V EGT
Sbjct: 173 TSGLDP-ISAGVIDELIR-ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 372 EDLSNN 377
E+L +
Sbjct: 231 EELLAS 236
|
Length = 263 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 41/234 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 855
L ++ IP + ++G +G GKS++L +L R+ +L G++L DG DI K
Sbjct: 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 898
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV- 134
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
KD + ++LGL S GQ+Q L ++RAL ++L+LDE T+A+D
Sbjct: 135 ----KDRLHDSALGL-----------SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIA 179
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
I++ I+E K T++I+ H + DR G ++EY E++ +N
Sbjct: 180 TGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-21
Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 43/219 (19%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP-- 233
L ++NLDI G V ++G +G GKT+ + M+ L + I G V +P
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLR-MIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 234 --QVSWIF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGG 277
++ +F + TV DNI FG P R + ++ ++H LD P
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPK- 129
Query: 278 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + Q +R EL
Sbjct: 130 ----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQ-----MRAELK 174
Query: 338 ------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEG 369
G T + VT +Q+ ++ DRI ++++G +++ G
Sbjct: 175 RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 2e-21
Identities = 51/218 (23%), Positives = 100/218 (45%), Gaps = 51/218 (23%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 217
+SI N FS+ + E+ L N++L++ G +A++G +G GK++L+ + G+L P
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 218 ------VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 271
VSD + ++ + Q ++F+ T+R+N+
Sbjct: 60 TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
G SGG++QR+++AR + ++ + + D+P LD RQ+
Sbjct: 96 --------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SL 140
Query: 332 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369
I L KT + +T+ L + +D+I+ + G + +G
Sbjct: 141 IFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 60/202 (29%), Positives = 101/202 (50%), Gaps = 27/202 (13%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-------SAVIRGTVA 230
P L +++ ++ G +AIVG G GK++L+ A+LG L P S + R +
Sbjct: 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIG 71
Query: 231 YVPQ---VSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
YVPQ + F +VRD +L G R D + L+ + ++E+ +R
Sbjct: 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---GLSELADR 128
Query: 286 GV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRV 342
+ +SGGQ+QRV +ARA+ + D+ + D+P + +D ++ +R EL G T +
Sbjct: 129 QIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK-TQEDIYELLR-ELRREGMTIL 186
Query: 343 LVTNQLHFLSQV----DRIILV 360
+VT H L V DR++L+
Sbjct: 187 VVT---HDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 3e-21
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 40/233 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 855
L ++ IP + ++G +G GKS++L L R+ +L G +L+DG +I K
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFN--------------LDPFSEHS--DADLWEALER 899
+++LR+ +G++ Q P F ++ N LD E S A LW+ +
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV-- 139
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
KD + +++LGL S GQ+Q L ++RAL + ++L++DE T+A+D +
Sbjct: 140 ---KDRLHKSALGL-----------SGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
I++ I E K T++I+ H + D G ++E+ +++ +N
Sbjct: 186 LKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 4e-21
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 20/240 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+F++V Y +L +S IVG +GAGKS+++ + R+++ G IL
Sbjct: 4 IEFKEV--SYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLK 903
IDG DI ++DLR+ +G++ Q P LF GTV+ N++ + D+ L
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS----- 116
Query: 904 DAIRRNSLGLDAQVSEAG-ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
+GL+ + + +N S G+ Q +S++R L ++L+LDE T+A+D + +I
Sbjct: 117 ------IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 963 QKTIRE--EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
++ I + + T++ I H + D L+ G ++EY + +N + +K+
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 4e-21
Identities = 68/241 (28%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ +++ + + VL G+S ++ + V I+G +G+GKS++L L + E + G I
Sbjct: 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 847 IDGFDI-AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-------EAL 897
+DG D+ K ++ LR+ +G++ Q LF TV N+ + A + EA
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV------TLAPVKVKKLSKAEAR 114
Query: 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-- 955
E+A + + + +GL + S GQ+Q ++++RAL K+++ DE T+A+D
Sbjct: 115 EKA--LELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170
Query: 956 -VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 1013
V + K + EE TM+I+ H + + DR++ +D G+++E PEE N
Sbjct: 171 LVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228
Query: 1014 S 1014
S
Sbjct: 229 S 229
|
Length = 240 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 22/235 (9%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIVELERG 843
I+ E + RY L +SF++ + V IVG G+GKS+ +LN L E G
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAG 62
Query: 844 RILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEAL 897
I + G +++ + D+R+ +G++ Q+P F G V F L E+ E +
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL----ENIGVPREEMV 118
Query: 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
ER A+R+ +G++ ++ S GQ+Q ++++ L + I++LDEAT+ +D R
Sbjct: 119 ERVD--QALRQ--VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 958 TDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010
+ +T+R+ E K T+L I H L+ DR+++++ G +LE TPEE+
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-20
Identities = 68/218 (31%), Positives = 116/218 (53%), Gaps = 33/218 (15%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVI--RGTVA 230
L ++NL++P GSLVA++G +G GK++L+ + G P S DA+ V +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 231 YVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+V Q +F + TVRDNI FG A AR E+ +++ L+ D P
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN------ 129
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSGKT 340
+SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + E+ T
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH-VT 183
Query: 341 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
V VT +Q + DRI+++ G +++ G+ +++ ++
Sbjct: 184 TVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 34/242 (14%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER--- 842
++ E++ RY V++G+S ++ + VG++G GAGK+ T F IV L +
Sbjct: 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKT----TTFYMIVGLVKPDS 54
Query: 843 GRILIDGFDIAKFGLMDLRKILGII--PQSPVLFSG-TVRFNLDPFSEHSDADLWEALER 899
G+IL+DG DI K M R LGI PQ +F TV N+ LE
Sbjct: 55 GKILLDGQDITKLP-MHKRARLGIGYLPQEASIFRKLTVEENILA-----------VLEI 102
Query: 900 AHLKDAIRRNSL-------GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
L R L + + S G+R+ + ++RAL K L+LDE A
Sbjct: 103 RGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162
Query: 953 AVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
VD IQK I+ + + +LI H + + DR ++ G+VL TPEE+ +
Sbjct: 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
Query: 1011 NE 1012
NE
Sbjct: 223 NE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 57/206 (27%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------------DA 221
++ L +++L+I G +VA++G +G GK++L+ + G P S D
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDE 70
Query: 222 SAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
+R + V Q +F + TV +NI G
Sbjct: 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------ 100
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSG 338
+SGGQ+QRV++ARA+ + DV + D+P SALD + R+ ++ G
Sbjct: 101 --------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP-ITRREVRALLKSLQAQLG 151
Query: 339 KTRVLVTNQLHFLSQV-DRIILVHEG 363
T VLVT+ L +++ DR++++ +G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-20
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 46/201 (22%)
Query: 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA 223
I N F + R L N++L + G +VA+VG G GK++L+ A+ G L P S
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EI 56
Query: 224 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+I G ++ + +R I + V L
Sbjct: 57 LIDGK-----DIAKLPLEELRRRIGY--------------VPQL---------------- 81
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 343
SGGQ+QRV++ARA+ N D+ + D+P S LD ++ + G+T ++
Sbjct: 82 ------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 344 VTNQLHFLSQV-DRIILVHEG 363
VT+ DR+I++ +G
Sbjct: 136 VTHDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 58/217 (26%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849
E++ Y+ + +L LS + + + + G+ GAGK+++ L +++ G IL++G
Sbjct: 3 ENISFSYK-KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 850 FDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA---LERAHLKD 904
I + RK +G + Q LF+ +VR L + DA +A L+ L
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
R+ L L S GQ+Q L+++ ALL +L+ DE T+ +D + + +
Sbjct: 119 LKERHPLSL-----------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 965 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 999
IRE +++I H + CDR+LLL +G +
Sbjct: 168 LIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAI 204
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+FE+V Y P L +SF IP + V + G +GAGKS++L ++ RG+IL
Sbjct: 2 IRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 847 IDGFDIAKFGLMD---LRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDA---DLWE 895
++G D+++ + LR+ +G++ Q L V L + + E
Sbjct: 61 VNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSE 120
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
L+ LK R L +Q+S G++Q ++++RA++ + +L+ DE T +D
Sbjct: 121 VLDLVGLKHKARA----LPSQLSG-------GEQQRVAIARAIVNQPAVLLADEPTGNLD 169
Query: 956 VRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEYDTPEE 1007
I + EE T+L+ H L + R+L L+ GR++ ++
Sbjct: 170 PDLSWEIMRLF-EEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 88.2 bits (220), Expect = 6e-20
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 60/218 (27%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 217
I +RN + K L +I+L + G + ++G G GKT+LI +LG L P
Sbjct: 1 IEVRNLSKRYGKK---TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 218 ------VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD 270
+ ++ + Y+P+ ++ N TVR+N+
Sbjct: 58 KVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL--------------------- 96
Query: 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
SGG KQR+++A+A+ + ++ I D+P S LD R+ F
Sbjct: 97 -------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDP-ESRREFWE 136
Query: 331 CIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMV 365
+R EL GKT +L ++ L ++ DR+ +++ G +
Sbjct: 137 LLR-ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 8e-20
Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 32/243 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+K E++ Y + L G++ I + I+G GAGKS++ L I++ GRIL
Sbjct: 6 LKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 847 IDG--FDIAKFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWE 895
DG D ++ GLM LR+ +G++ Q P LFS +V NL + +
Sbjct: 65 FDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDN 124
Query: 896 ALER---AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
AL+R HLKD + S GQ++ ++++ L+ K+LVLDE TA
Sbjct: 125 ALKRTGIEHLKD--------------KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTA 170
Query: 953 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELL 1009
+D + I K + E K T++I H ++ + + CD + ++ GRV+ P+E+
Sbjct: 171 GLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
Query: 1010 SNE 1012
+ +
Sbjct: 231 AEK 233
|
Length = 283 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 8e-20
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 45/250 (18%)
Query: 787 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER- 842
I+ +++ + + L+ +S IP + G++G +GAGKS TL R + LER
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKS----TLIRCINLLERP 57
Query: 843 --GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSGTVRFNLDPFSEHSDAD---L 893
GR+L+DG D+ +L R+I G+I Q FNL S + D L
Sbjct: 58 TSGRVLVDGQDLTALSEKELRKARRQI-GMIFQ---------HFNL--LSSRTVFDNVAL 105
Query: 894 WEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946
LE A K I+ L GL + S GQ+Q ++++RAL K+L+
Sbjct: 106 --PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLL 163
Query: 947 LDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 1001
DEAT+A+D T I K I E T+++I H ++ + I CDR+ ++D+GR++E
Sbjct: 164 CDEATSALDPATTRSILELLKDINRELG-LTIVLITHEMDVVKRI-CDRVAVIDAGRLVE 221
Query: 1002 YDTPEELLSN 1011
T E+ S+
Sbjct: 222 QGTVSEVFSH 231
|
Length = 343 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-20
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 47/241 (19%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 216
PA+ IRN S+ + +I+LDI G V ++G +G GKT+L+ + G E P
Sbjct: 4 PALEIRNVSKSFGDF---TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 217 -------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFG--------SAFEPARYEK 260
++D R + V Q +F + TV +N+ FG A AR E+
Sbjct: 61 EILLDGEDITDVPPEKRP-IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEE 119
Query: 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
A+++ L+ D P +SGGQ+QRV++ARA+ V + D+PLSALD
Sbjct: 120 ALELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 321 AHVGRQVFDRCIRGEL------SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFED 373
A + Q+ R EL G T V VT +Q L+ DRI ++++G +++ GT E+
Sbjct: 169 AKLREQM-----RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEE 223
Query: 374 L 374
+
Sbjct: 224 I 224
|
Length = 352 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 8e-20
Identities = 67/218 (30%), Positives = 109/218 (50%), Gaps = 17/218 (7%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-L 860
L G+S T+ P + ++G GAGKS+++ L + + G ILIDG +A D L
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 861 RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERAHLKDAIRRNSLGLDA 915
+ + Q L +V N+ +P D +A+ R ++ + R LGLD
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID-RKAMRRR-ARELLAR--LGLDI 137
Query: 916 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFKS-- 972
+ S+ QRQ++ ++RAL +++L+LDE TAA+ V+ T+ L IR K+
Sbjct: 138 DPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLF-DLIR-RLKAQG 195
Query: 973 CTMLIIAHRLNTIID-CDRILLLDSGR-VLEYDTPEEL 1008
++ I+HRL+ + + DRI +L GR V T E
Sbjct: 196 VAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233
|
Length = 500 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 9e-20
Identities = 66/235 (28%), Positives = 113/235 (48%), Gaps = 46/235 (19%)
Query: 173 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT--- 228
D+ + L +++L +P G + I+G +G GK++LI + G E P + S ++ GT
Sbjct: 13 DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70
Query: 229 -------------VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKA---------IDVT 265
+ + Q + ++ TV +N+ E A KA +++
Sbjct: 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--PLEIAGVPKAEIEERVLELLELV 128
Query: 266 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 325
L+ D P +SGGQKQRV +ARA+ +N V + D+ SALD +
Sbjct: 129 GLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 326 QVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+ R I EL G T VL+T+++ + ++ DR+ ++ +G V EEGT E++ N
Sbjct: 178 SILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-19
Identities = 46/141 (32%), Positives = 73/141 (51%)
Query: 3 PVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELS 62
P+ I+ ++ + D R+ NE + + K AWE F + +++ R EL
Sbjct: 401 PLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELR 460
Query: 63 WFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFML 122
+ R Q SF+ N+ P L+ V F ++ LLG +LTP F +++L VLR P FM+
Sbjct: 461 YLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMI 520
Query: 123 PNMITQVVNANVSLKRMEEFL 143
P + T V+ VS+KR+ FL
Sbjct: 521 PWVFTTVLQFLVSIKRISTFL 541
|
Length = 1560 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 1e-19
Identities = 57/230 (24%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA 223
+ L ++L++ G +VA++G G GKT+L+ ++G + P S
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 224 VIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
R +AYVP+ IF TV +N+L G+ + + D+ + +L P +
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV---YELFP-----RL 126
Query: 283 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGEL 336
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ + +R E
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE- 185
Query: 337 SGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385
G T +LV F L DR ++ G + GT +L + ++ + +
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYL 235
|
Length = 237 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 1e-19
Identities = 118/563 (20%), Positives = 230/563 (40%), Gaps = 85/563 (15%)
Query: 507 IYSLLSFG--QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINR 564
I+SL+ G Q +++ +S+ + + + K L L S+ F NP ++ +
Sbjct: 100 IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSD 159
Query: 565 FAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623
L ++ + F+ +F S L ++ + I + L Y +
Sbjct: 160 LDFYLEQVNAGIGTKFITIFT-YASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICN 218
Query: 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 683
+ K+ + + + EAL G+ T+ +Y + S +Y L
Sbjct: 219 KKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL---K 275
Query: 684 ANRWLAIRLEIVGGLMI-------WLTATFAV--VQNGSAENQEAFASTMGLLLSYALNI 734
AN ++ + ++ G ++ W + + N N S + +LL +
Sbjct: 276 ANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGV---L 332
Query: 735 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVL 794
S+ + L ++ E + ++E + E+ + PLV E+N I+F++V
Sbjct: 333 ISMFMLTIILPNITE-YMKSLEATNSLYEIINRKPLV-ENNDDGKKLKDIKKIQFKNVRF 390
Query: 795 RY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFD 851
Y R ++ + L+FT+ VG +G GKS++L + R+ + G I+I D +
Sbjct: 391 HYDTRKDVE-IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN 449
Query: 852 IAKFGLMDLRKILGIIPQSPVLFSGTVRFN----------LDPFSEHSDADLWEALERAH 901
+ L R +G++ Q P+LFS +++ N L+ S + + D ++ E +
Sbjct: 450 LKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKN 509
Query: 902 LKDAIRRNSLG------------------------------------------------L 913
+++ R G
Sbjct: 510 KRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKY 569
Query: 914 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEFK 971
+ V S GQ+Q +S++RA++R KIL+LDEAT+++D +++ L+QKTI + +
Sbjct: 570 ETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNE 629
Query: 972 SCTMLIIAHRLNTIIDCDRILLL 994
+ +IIAHRL+TI + I +L
Sbjct: 630 NRITIIIAHRLSTIRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 62/236 (26%), Positives = 98/236 (41%), Gaps = 56/236 (23%)
Query: 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 841
P + V + G+SF+I + +G+VG +G GKS++ + + E
Sbjct: 15 PVGKGFGKKRYV--------KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT 66
Query: 842 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH 901
G IL +G DI K E + E LE+
Sbjct: 67 SGEILFEGKDITKLS-----------------------------KEERRERVLELLEKVG 97
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA- 960
L + L E S GQRQ + ++RAL K++V DE +A+DV A
Sbjct: 98 LPEEF------LYRYPHE----LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147
Query: 961 ---LIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1011
L++ ++EE T L I+H L+ + I DRI ++ G+++E EE+ SN
Sbjct: 148 ILNLLKD-LQEEL-GLTYLFISHDLSVVRYI-SDRIAVMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 1e-19
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 794 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853
+ Y +L+ +S ++ + + I G +G GKS++L + ++ G +L +G D++
Sbjct: 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS 68
Query: 854 KFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLG 912
R+ + Q+P LF TV NL P+ + +RA D + R +L
Sbjct: 69 TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALP 123
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV----RTDALIQKTIRE 968
D+ +++ S G++Q ++L R L KIL+LDE T+A+D + +I + +RE
Sbjct: 124 -DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 969 E 969
+
Sbjct: 183 Q 183
|
Length = 223 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 57/228 (25%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+L G+S + P + + I+G GAGKS++L L + + G + ++G + + +L +
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 863 ILGIIPQSPVL-FSGT----VRFNLDPFSEHSDAD-----LWEALERAHLKDAIRRNSLG 912
++PQ+ L F T V+ P + + +AL L R+
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRT 135
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQKTI 966
L S G++Q + L+R L + + L LDE T+A+D+ +
Sbjct: 136 L-----------SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 967 REEFKS-CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
R+ + +L + H LN DRI+LL GRV+ +P+++L++E
Sbjct: 185 RQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDE 232
|
Length = 259 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 2e-19
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGT 228
L +INL + G VAI+G +G GK++L+ + G P S
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 229 VAYVPQ----VSWIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGG 277
+ YV Q + W TV DN+ G A R ++ +++ L D P
Sbjct: 74 IGYVFQEDALLPW---LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH- 129
Query: 278 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA----HVGRQVFDRCIR 333
+SGG +QRV++ARA+ + + + D+P ALDA + ++ +
Sbjct: 130 ----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR--LW 177
Query: 334 GELSGKTRVLVTNQLH---FLSQVDRIIL 359
E KT +LVT+ + +L+ DR+++
Sbjct: 178 EET-RKTVLLVTHDVDEAVYLA--DRVVV 203
|
Length = 248 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 29/220 (13%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRG 227
L +++LDIP G LVA++G +G GKT+L+ + G E P +D R
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 228 TVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
V +V Q +F + TV DN+ FG + P E V L L L+ +
Sbjct: 76 -VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHEL---LKLV---QLDW 128
Query: 282 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV--FDRCIRGELSG 338
+ +R +SGGQ+QRV++ARA+ V + D+P ALDA V +++ + R + EL
Sbjct: 129 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-H 187
Query: 339 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
T V VT +Q L DR++++++G +++ GT +++ ++
Sbjct: 188 VTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-19
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E+V Y P+ P L ++ I + +GI+G+ G+GKS++ L ++ ++G++L
Sbjct: 2 IRLENVSYSY-PDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 847 IDGFDIAKFG-LMDLRKILGIIPQSP-VLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 903
+ G D F L +RK++GI+ Q+P F G TV +L E+ E +R
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 962
A +GL+ + + S GQ Q ++L+ L + L+ DE T+ +D + A++
Sbjct: 121 LA----EIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011
++ + K T++ I H L + D DRI+++D G+++ PE +LS+
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 36/231 (15%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ +++ + VL G+ T+ + V I+G +G+GKS++L + + E + G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 847 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA------------- 891
IDG + K + +LR+ +G++ Q FNL P H
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQ---------FNLFP---HLTVLENITLAPIKVKG 106
Query: 892 -DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950
EA ERA + + + +GL + S GQ+Q ++++RAL K+++ DE
Sbjct: 107 MSKAEAEERAL--ELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 951 TAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 999
T+A+D + +++ + TM+++ H + + DR++ +D GR+
Sbjct: 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 59/219 (26%), Positives = 108/219 (49%), Gaps = 35/219 (15%)
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG---------------ELPPVS 219
+ L ++NL+I G VAIVG +G GK++L++ +LG +L +S
Sbjct: 15 GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLS 73
Query: 220 DA--SAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDL-D 272
+ + + R + +V Q + + + TV +N+ R ++A + L D
Sbjct: 74 EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLED 133
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
L +E+ SGGQ+QRV++ARA+ +N + + D+P LD+ ++V + +
Sbjct: 134 RLLKKKPSEL-------SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE--L 184
Query: 333 RGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368
EL+ GKT ++VT+ DR+I + +G ++EE
Sbjct: 185 LRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 3e-19
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 45/231 (19%)
Query: 163 ISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
I ++N ++ E+ L ++L I G VAIVG +G GK++L++ + G P S
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 220 -------------DASAVIRG-TVAYVPQVSWIFN----ATVRDNILFGSAFEP------ 255
A R + +V Q FN T +N+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQS---FNLLPDLTALENVELPLLLAGVPKKER 117
Query: 256 -ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314
R E+ ++ L L+ P +SGGQ+QRV++ARA+ ++ + + D+
Sbjct: 118 RERAEELLERVGLGDRLNHYPS-----------ELSGGQQQRVAIARALANDPKIILADE 166
Query: 315 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEG 363
P LD+ G++V + +R + +G T V+VT+ DRII + +G
Sbjct: 167 PTGNLDSETGKEVME-LLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 40/209 (19%)
Query: 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------DASAVIRGTVA 230
L +++LD+ G ++A+ G G GKT+L + G + S + R ++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 231 YVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTSL--------QHDLDLLPGGDVT 280
YV Q +F +VR+ +L G A E+A V +H L L
Sbjct: 75 YVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL------- 127
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--G 338
SGGQKQR+++A A+ S D+ IFD+P S LD +V + + EL+ G
Sbjct: 128 ---------SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE--LIRELAAQG 176
Query: 339 KTRVLVTNQLHFLSQV-DRIILVHEGMVK 366
K +++T+ FL++V DR++L+ G +
Sbjct: 177 KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 3e-19
Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 860
L ++ I + V IVG +G+GKS++LN L + + G +LI+G D+ K +L
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78
Query: 861 ---RKILGIIPQS-PVLFSGTVRFNLD-PF------SEHSDADLWEALERAHLKDAIRRN 909
RK +G + Q+ +L TV N++ P + E LE L+D + +
Sbjct: 79 KLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKK 138
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969
SE S GQ+Q ++++RAL+ KI++ DE T +D +T + + +RE
Sbjct: 139 K------PSEL----SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL 188
Query: 970 FKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
K T++++ H DR++ L G++ E
Sbjct: 189 NKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 4e-19
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 12/213 (5%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
L +SFT+ P V ++G GAGKS++ + L R+ + G+I + G D+ + L
Sbjct: 15 RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA 74
Query: 862 KILGIIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--LGLDAQVS 918
++ G++ Q P L +VR NL A L L RA + I LGL +
Sbjct: 75 RL-GVVFQQPTLDLDLSVRQNL-----RYHAAL-HGLSRAEARARIAELLARLGLAERAD 127
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTML 976
+ + G R+ + ++RALL R +L+LDE T +D + A I +R + ++L
Sbjct: 128 DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVL 187
Query: 977 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009
H ++ I DR+++L GRVL EL
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 5e-19
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 34/221 (15%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVI 225
L ++L +P G +VA++G G GKT+L+ ++G LPP S
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 226 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
R + YVP+ IF TV +N+L G A A+ + ++ +L P +
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLE-----RVYELFP-----RLK 123
Query: 284 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELS 337
ER +SGG++Q +++ARA+ S + + D+P L + ++F+ R +R E
Sbjct: 124 ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-- 181
Query: 338 GKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNN 377
G T +LV F L DR ++ G V EGT +L +
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 5e-19
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 42/205 (20%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 859
+L +S P + I+G +GAGKS++LN L R G +LI+G + K
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---S 79
Query: 860 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918
RKI+G +PQ +L TVR L F+ A L+ GL
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-FA-------------AKLR--------GL----- 112
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLI 977
S G+R+ +S++ L+ +L LDE T+ +D + + +R + T++
Sbjct: 113 ------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 978 IAHRLNTII--DCDRILLLDSGRVL 1000
H+ ++ I D++LLL GRV+
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 5e-19
Identities = 61/223 (27%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 854
+ L +SF I ++VGI+G GAGKS++L + I + G++ + G +A
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-KVA- 91
Query: 855 FGLMDLRKILGIIPQSPVLFSG--TVRFN---LDPFSEHSDADLWEALERAHLKDAIRRN 909
L++L G P+ +G + L + D + E +E A L D I
Sbjct: 92 -PLIELG--AGFDPE----LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI--- 141
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-- 967
D V + +S G L+ S A IL+LDE A D A +K +
Sbjct: 142 ----DQPV----KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA---AFQEKCLERL 190
Query: 968 EEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007
E K+ T+++++H L I CDR + L+ G++ +PEE
Sbjct: 191 NELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 6e-19
Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 20/221 (9%)
Query: 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 863
I + I+G +G+GKS+ + L R++E G+I IDG +I K ++L RK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 864 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 922
+G++ Q LF T+ N E E E+A + ++ +GL+ +
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA--LELLKL--VGLEEYEHRYPD 128
Query: 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TML 976
S G +Q + L+RAL IL++DEA +A+ D LI+ ++++E K T++
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSAL----DPLIRDSMQDELKKLQATLQKTIV 184
Query: 977 IIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSF 1016
I H L+ I DRI+++ +G +++ TP+E+L N + +
Sbjct: 185 FITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 8e-19
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 44/225 (19%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 228
L I+L + G +V I+G +G GK++L+ + G L S + G
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKLR 76
Query: 229 --VAYVPQVSWIFNA----TVRDNILF------GSAFEPARYEKAIDVTS---LQHDLDL 273
V V Q FN TV +N+ + AR EKA+++ L D
Sbjct: 77 RKVGMVFQQ---FNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKALELLEKVGLADKADA 132
Query: 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
P +SGGQ+QRV++ARA+ + V +FD+P SALD + +V D
Sbjct: 133 YPA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181
Query: 334 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
G T ++VT+++ F +V DR+I + +G + EEG E+ +N
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 9e-19
Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 62/224 (27%)
Query: 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA-- 221
+ N + R L +++L I G +V I+G G GK++L+ + G L P S
Sbjct: 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 222 ----------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 271
+ +AYVPQ L
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQA-----------------------------------L 82
Query: 272 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
+LL + + +R N +SGG++QRV +ARA+ + + D+P S LD ++ +
Sbjct: 83 ELL---GLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 331 CIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 369
R GKT V+V LH L+ DR+IL+ +G + +G
Sbjct: 140 LRRLARERGKTVVMV---LHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 9e-19
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 14/129 (10%)
Query: 828 SSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILGIIPQSPVLF-SGTVRFNLDP- 884
S++L + +++ G IL+DG D LRK +G++ Q P LF TVR NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 885 -FSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943
+ +DA EALER L D + R +G S GQ+Q ++++RALL++ K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 944 ILVLDEATA 952
+L+LDE TA
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+ G++F + + G +G GAGK++ + L ++ G + G+D+ + +R
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVR 65
Query: 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 920
+ +GI+PQ + T R NL+ EA ERA ++ + LG A
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA--EELLELFELGEAAD--RP 121
Query: 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIA 979
+S G R+ L ++ +L+ + +L LDE T +D RT I IR + T+L+
Sbjct: 122 VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTT 181
Query: 980 HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
H + CDRI ++D GR++ TPEEL G
Sbjct: 182 HYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDT 219
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 2e-18
Identities = 57/237 (24%), Positives = 94/237 (39%), Gaps = 45/237 (18%)
Query: 787 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
++ +V Y L +S ++ + V +VG +G GKS++L + + G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWE---- 895
+L+DG + G + Q L V L+ A+ E
Sbjct: 61 VLVDGEPVT-----GPGPDRGYVFQQDALLPWLTVLDNVALGLE-LQGVPKAEARERAEE 114
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
LE L Q+S G G RQ ++L+RAL +L+LDE +A+D
Sbjct: 115 LLELVGLSGFENA----YPHQLS--G-----GMRQRVALARALAVDPDVLLLDEPFSALD 163
Query: 956 VRTDALIQ----KTIREEFKSCTMLIIAHRLNTIID-----CDRILLLDS--GRVLE 1001
T +Q RE K T+L++ H ID DR+++L + GR++
Sbjct: 164 ALTREQLQEELLDIWRETGK--TVLLVTHD----IDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 12/219 (5%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
L +S + D I+G TG+GKS +L T+ ++ + G+IL++G DI L ++
Sbjct: 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKR 71
Query: 863 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+ +PQ+ LF TV N+ + D E + I LG+D ++
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVL---EIAE-MLGIDHLLNRKP 127
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQ--KTIREEFKSCTMLII 978
E S G++Q ++++RAL+ KIL+LDE +A+DVRT + L + K IR+EF T+L +
Sbjct: 128 ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV-TVLHV 186
Query: 979 AHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
H D++ ++ +G++++ PEE+ + F
Sbjct: 187 THDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 2e-18
Identities = 67/257 (26%), Positives = 121/257 (47%), Gaps = 30/257 (11%)
Query: 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS---MLNTLFRIV 838
++F+ V Y P L+ +SF+IP ++G G+GKS+ ++N L
Sbjct: 1 MKDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSP------VLFSGTVRFNLDPFSEHSDAD 892
+ +I +DG + + D+R+ +GI+ Q+P V F L+
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLEN-------- 112
Query: 893 LWEALERAHLKDAIRR--NSLG-LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
A+ R + +R +G LD SE N S GQ+Q ++++ L KI++LDE
Sbjct: 113 --RAVPRPEMIKIVRDVLADVGMLDYIDSEP-ANLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 950 ATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1007
+T+ +D I K IR+ + + T++ I H ++ D++L+LD G++L +P E
Sbjct: 170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVE 229
Query: 1008 LLSNEGSSFSKMVQSTG 1024
+ S +M++ G
Sbjct: 230 IFSKV-----EMLKEIG 241
|
Length = 282 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 18/234 (7%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+ +DV Y LP + T+P + V I+G +GAGKS++LN + G IL
Sbjct: 2 LALDDVRFSYG-HLP--MR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEIL 57
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 905
I+G D + + ++ Q LF+ TV N+ L A +R ++ A
Sbjct: 58 INGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKVEAA 113
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 961
+ +GL + S GQRQ ++L+R L+R IL+LDE +A+D +R + AL
Sbjct: 114 AAQ--VGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014
+ + E + T+L++ H DR++ LD+GR+ + +ELLS + S
Sbjct: 172 VSQLCDE--RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 29/209 (13%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
L +SF +P +++G++GR GAGKS++L L I + G + + G + GL
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG---- 92
Query: 863 ILGIIPQSPVLFSGT--VRFNLDPFSEHSDADLWEALER----AHLKDAIRRNSLGLDAQ 916
G P+ +G + N S ++ E ++ + L D I D
Sbjct: 93 -GGFNPE----LTGRENIYLNGR-LLGLSRKEIDEKIDEIIEFSELGDFI-------DLP 139
Query: 917 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 976
V +S G + L+ + A IL++DE A D Q+ +RE K +
Sbjct: 140 VK----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTV 195
Query: 977 IIA-HRLNTIID-CDRILLLDSGRVLEYD 1003
I+ H ++I CDR L+L+ G++
Sbjct: 196 ILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-18
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 24/223 (10%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E++ RY + L G+S T+ P G++G GAGK++++ L + G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPF-------SEHSDADLWEALE 898
IDG D+ K LR+ +G +PQ ++ TVR LD S+ A + E LE
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLE 116
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
+L D ++ S G R+ + +++AL+ IL++DE TA +D
Sbjct: 117 LVNLGDR-------AKKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000
+ + E + +++ H + + C+++ +L+ G+++
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 64/233 (27%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 856
L ++ I + ++G +G GKS+ L TL R+ +L G +L+DG DI +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 899
+ LRK +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD---- 134
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD +++++LGL S GQ+Q L ++RAL ++L++DE T+A+D +
Sbjct: 135 -EVKDRLKKSALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
I++ I+E K T++I+ H + D+ +G ++E+ +L +N
Sbjct: 183 LKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 3e-18
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 34/231 (14%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+L +S T+ P + V I+G GAGKS++L L + + G + ++G +A + +L
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75
Query: 862 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDAD---LWEALER---AHLKDAIRRNS 910
+ ++PQ L F TV P D + AL + AHL R+
Sbjct: 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG---RDY 132
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRS------KILVLDEATAAVDVRTDALIQK 964
L S G++Q + L+R L + + L+LDE T+A+D+ + +
Sbjct: 133 PQL-----------SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLR 181
Query: 965 TIREEFKS--CTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
R+ ++++ H LN DRI+LL GR++ TP E+L+ E
Sbjct: 182 LARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 6e-18
Identities = 54/219 (24%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+F +V Y P L G++ +I + V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 847 IDGFDIAKF---GLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHL 902
++G D++ + LR+ +G++ Q +L V N+ E + E +R +
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--V 117
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
A+ +GL + S G++Q ++++RA++ IL+ DE T +D T I
Sbjct: 118 PAALEL--VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDC--DRILLLDSGRV 999
+++ K+ T +++A ++D R++ L+ G++
Sbjct: 176 MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 6e-18
Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 10/218 (4%)
Query: 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI---- 863
S I + I+G +G+GKS+M+ L R++E RG++LIDG DIAK +LR++
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923
+ ++ QS L + F A + R DA+R+ +GL+ +
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMEL-AGINAEERREKALDALRQ--VGLENYAHSYPDE 164
Query: 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCTMLIIAHR 981
S G RQ + L+RAL IL++DEA +A+D +RT+ + + T++ I+H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 982 LNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
L+ + DRI ++ +G V++ TP+E+L+N + + +
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 6e-18
Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 61/217 (28%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ + R+ L G+S ++ + ++G GAGKS+++ L + + + G IL
Sbjct: 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
+DG V F+ +DA
Sbjct: 59 VDG--------------------KEVSFASP-------------------------RDA- 72
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKT 965
RR + + Q+S VG+RQ++ ++RAL R +++L+LDE TAA+ + L K
Sbjct: 73 RRAGIAMVYQLS-------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KV 124
Query: 966 IREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 999
IR ++ ++ I+HRL+ + + DR+ +L GRV
Sbjct: 125 IR-RLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 7e-18
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 47/220 (21%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIRGT 228
+++ I G + +VG +G GK++L A+LG +L +S IR
Sbjct: 23 DVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRK 82
Query: 229 -VAYVPQVSWIFNA-----TVRDNILFG----------SAFEPARYEKAIDVTSLQHDLD 272
+ V Q ++ T+ + I A + A + V + L+
Sbjct: 83 EIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLN 140
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 330
P +SGGQ+QRV++ARA+ N + I D+P SALD V Q+ D +
Sbjct: 141 RYPHE-----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189
Query: 331 CIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 369
++ EL G T + +T+ L ++++ DR+ +++ G + EEG
Sbjct: 190 KLQEEL-GLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-17
Identities = 68/280 (24%), Positives = 116/280 (41%), Gaps = 49/280 (17%)
Query: 135 SLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN------GYFSWDSKAERPTLL--NINL 186
L L E+ I LP P +S+RN + +++
Sbjct: 253 GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312
Query: 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQVSWI 238
D+ G + +VG +G GK++L + G LPP S D ++ +
Sbjct: 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMV 372
Query: 239 F---------NATVRDNI--------LFGSAFEPARYEKAIDVTSLQHD-LDLLPGGDVT 280
F TV D + A AR + +++ L + LD P
Sbjct: 373 FQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHE--- 429
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 338
+SGGQ+QRV++ARA+ + I D+P+SALD V QV + + ++ EL G
Sbjct: 430 --------LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-G 480
Query: 339 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
T + +++ L + + DR+ ++++G + EEG E + N
Sbjct: 481 LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 66/210 (31%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----------DAS--AV 224
L +I+LDI G LVA++G +G GK++L+ + G P + D S AV
Sbjct: 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV 74
Query: 225 IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
V +V Q + + TV DNI FG R +A ++ L L+ + +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRY 134
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTR 341
+SGGQ+QRV++ARA+ V + D+P ALDA V R+ R +R + G T
Sbjct: 135 PA--QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV-RKELRRWLRKLHDRLGVTT 191
Query: 342 VLVT-NQLHFLSQVDRIILVHEGMVKEEGT 370
V VT +Q L DR++++++G +++ G
Sbjct: 192 VFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 57/225 (25%), Positives = 105/225 (46%), Gaps = 39/225 (17%)
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 225
L+ + +P + AI G +G GKT+LI + G P + D+ I
Sbjct: 14 LDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE 73
Query: 226 RGTVAYVPQVSWIF-NATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLPGGDV 279
+ + YV Q + +F + +VR N+ +G + +E+ I++ + H L LPG
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPG--- 130
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339
+SGG+KQRV++ RA+ S+ + + D+PL+ALD ++ R L +
Sbjct: 131 --------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER--LHAE 180
Query: 340 TRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGEL 380
+ + H L +V DR++++ +G V G ++ + +L
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 2e-17
Identities = 57/227 (25%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------DIAKFG 856
+L ++ IP + GI+G +G+GKS++L L R++E+ +I +DG DI +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 857 LMDLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
+ LRK +G++ Q P F ++ N+ P H + E + +++ +R+ L +
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI--KKIVEECLRKVGLWKE 142
Query: 915 A--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972
+++ S GQ+Q L+++RAL + K+L++DE T+ +D+ I+K I E
Sbjct: 143 VYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNE 202
Query: 973 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
++I++H + D + L +G ++E+ + E+ ++ + ++
Sbjct: 203 IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 23/208 (11%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
VL +S + + G +G GAGK++ + + +++ + G I DG K ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 862 KILGIIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDA 915
+ +G + ++P + T R NL + D E L+ LKD+ ++
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID--EVLDVVGLKDSAKK------- 122
Query: 916 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CT 974
+V FS+G +Q L ++ ALL +L+LDE T +D +++ I T
Sbjct: 123 KVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 975 MLIIAHRLNTI-IDCDRILLLDSGRVLE 1001
+LI +H L+ I DRI +++ G+++E
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 58/209 (27%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865
G+SF + + G++G GAGK++ + L +++ GR + G D+ + ++R+ +G
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76
Query: 866 IIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGE 922
I+ Q + T NL A L+ + A ++ I + +GL +
Sbjct: 77 IVFQDLSVDDELTGWENLYIH-----ARLY-GVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 980
+S G R+ L ++R+L+ R ++L LDE T +D +T A + + I + E T+L+ H
Sbjct: 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190
Query: 981 RLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+ CDR+ ++D GR++ TPEEL
Sbjct: 191 YMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 48/214 (22%)
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGT------------ 228
L I+ D+ + I G +G GK++L+ + G E P + V+ GT
Sbjct: 15 LKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDG--GTIVLNGTVLFDSRKKINLP 71
Query: 229 -----VAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+ V Q +F + VR+N+ FG + E I V L LDLL + +
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-RNREDRISVDEL---LDLL---GLDHL 124
Query: 283 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---- 337
R +SGG+KQRV++ARA+ + ++ + D+P SALD + Q + EL
Sbjct: 125 LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ-----LLPELKQIKK 179
Query: 338 --GKTRVLVTNQLHFLSQV----DRIILVHEGMV 365
+ VT H LS+ DRI+++ +G +
Sbjct: 180 NLNIPVIFVT---HDLSEAEYLADRIVVMEDGRL 210
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 4e-17
Identities = 58/234 (24%), Positives = 111/234 (47%), Gaps = 16/234 (6%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I F++V +Y+ + L +SF IP IVG G+GKS++ + I +++ G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPV-LFSGT-----VRFNLDPFSEHSDADLWEALERA 900
+ I LRK +GI+ Q+P F G+ V F L+ + D ++ + A
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD-EMHRRVSEA 126
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
LK + + + S GQ+Q ++++ L +++LDEAT+ +D
Sbjct: 127 -LKQ------VDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQ 179
Query: 961 LIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
+ +R+ + T++ I H L+ ++ D +++++ G V + TP E+ +
Sbjct: 180 NLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-17
Identities = 68/241 (28%), Positives = 127/241 (52%), Gaps = 22/241 (9%)
Query: 786 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
SIK E++ Y P L ++ I + VG++G TG+GKS+++ L +++
Sbjct: 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS 61
Query: 843 GRILIDGFDIA--KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALE 898
G+I+IDG DI K L D+RK +G++ Q P LF T+ ++ +L L
Sbjct: 62 GKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDI----AFGPINL--GLS 115
Query: 899 RAHLKDAIRR--NSLGLDAQVSEAGENF--SVGQRQLLSLSRALLRRSKILVLDEATAAV 954
+++ ++R N +GLD + + F S GQ++ ++++ + KIL+LDE TA +
Sbjct: 116 EEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175
Query: 955 D--VRTDALIQ-KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
D R + L + K + +E+ T+++++H + + DRI++++ G+ TP E+
Sbjct: 176 DPKGRDEILNKIKELHKEYNM-TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234
Query: 1011 N 1011
Sbjct: 235 E 235
|
Length = 287 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 9e-17
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 41/228 (17%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E V + VL ++ ++ + V I+G +G GKS++L + + + G +L
Sbjct: 4 LEIEGVSKSFGGV--EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSDADLWEALE 898
+DG + G I G + Q L TV N+ + E LE
Sbjct: 62 LDGRPVTGPG----PDI-GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLE 116
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
L D + S G RQ ++++RAL R K+L+LDE A+D T
Sbjct: 117 LVGLAGF-------EDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 959 DALIQK---TIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSG 997
+Q + EE + T+L++ H L DR+++L +
Sbjct: 166 REELQDELLRLWEETR-KTVLLVTHDVDEAVYL-----ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 1e-16
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 226
L I+L + G +V I+G +G GK++L+ + +L +R
Sbjct: 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELR 75
Query: 227 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEP-ARYEKAIDVTSLQHDLDLLPGG 277
V V Q +F + TV +NI S E R + ++ L D P
Sbjct: 76 QKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPA- 134
Query: 278 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337
+SGGQ+QRV++ARA+ N V +FD+P SALD + +V D
Sbjct: 135 ----------QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 184
Query: 338 GKTRVLVTNQLHFLSQV-DRIILVHEGMV 365
G T V+VT+++ F +V DR+I + +G +
Sbjct: 185 GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
++ AE L +I+ +I G V I+G G GK++L+ + G P S
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS-GK 83
Query: 223 AVIRGTVAYVPQVSWIFN--ATVRDNILFGSAFEP-------ARYEKAIDVTSLQHDLDL 273
+ G VA + ++ F+ T R+NI + ++ I+ L +D
Sbjct: 84 VKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID- 142
Query: 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
P S G R++ + A + D+ + D+ L+ DA + +R
Sbjct: 143 QPVK----------TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNE 192
Query: 334 GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 373
KT VLV++ L + Q DR I + G ++ EG+ E+
Sbjct: 193 LVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEE 233
|
Length = 249 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-16
Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+L+ LS ++P ++G G GKS++L R++ + G + + I+ L
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75
Query: 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQV 917
+ L ++PQ + G TVR L + LW L + A + A+ + ++
Sbjct: 76 RRLALLPQHHLTPEGITVR-ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQ--TRINHLA 132
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 976
+ S GQRQ L+ L + + +++LDE T +D+ + + +RE + T++
Sbjct: 133 DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVV 192
Query: 977 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ H LN CD +++L +G V+ TPEE+++
Sbjct: 193 TVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPG 229
|
Length = 255 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 1e-16
Identities = 115/542 (21%), Positives = 201/542 (37%), Gaps = 72/542 (13%)
Query: 491 TDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 550
T +SL L LL + +L + L + +L + IL P+
Sbjct: 43 TADTSL---LVLPEFLGLLLLFM---VSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPL 96
Query: 551 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ----LLSTFVLIGIVSTMSL- 605
R++ D+ RN++ F + ++ Q L + + +S
Sbjct: 97 ERIERLGSARLLAGLTSDV----RNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFL 151
Query: 606 ----WAIMPLLLLFYAAYLYYQ--STAREVKRLDSITRSPVYAQFGEALNG-----LSTI 654
W ++ + F Y+ + ARE T + + L G L+
Sbjct: 152 LTVVWIVVTIWGGFVLMARVYKHMAAARE-------TEDKLQNDYQTILEGRKELTLNRE 204
Query: 655 RAYKAYDRMADINGKSMDKNIRY-TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 713
RA ++ + + + +I ++ A W I L + GL+ WL
Sbjct: 205 RAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA---------- 254
Query: 714 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773
+AST + + L + L T +L + L A + N I AP +
Sbjct: 255 --LSLGWAST-NVAATIVLVLLFLRTPLLSAVGILPTLLTA-QVAFNKIAKLELAPYKAD 310
Query: 774 SNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 830
RP +P +++ +V Y+ + P+ + TI + V ++G G+GKS++
Sbjct: 311 FPRPQA-FPDWKTLELRNVRFAYQDNAFHVGPI----NLTIKRGELVFLIGGNGSGKSTL 365
Query: 831 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 890
L + + + G IL+DG ++ L D RK+ + LF + + +
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKASPQL 423
Query: 891 ADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
+ W + LE AH L S GQ++ L+L ALL ILVLDE
Sbjct: 424 IEKWLQRLELAHKTSLNDGRFSNLK---------LSTGQKKRLALLLALLEERDILVLDE 474
Query: 950 ATAAVDVRTDALIQKTIREEFKSC--TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1007
A D + + K T+ I+H + I DR+L + +G++ E T EE
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE-LTGEE 533
Query: 1008 LL 1009
Sbjct: 534 RD 535
|
Length = 546 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-16
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
+++ +V + + +S I + V ++G +G GK+++L + +
Sbjct: 2 PKPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 843 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADL 893
G IL+DG DI D+ R I G++ QS LF V F L + A++
Sbjct: 60 GEILLDGEDIT-----DVPPEKRPI-GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEI 113
Query: 894 W----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
EALE L+ D + + S GQ+Q ++L+RAL+ K+L+LDE
Sbjct: 114 KARVEEALELVGLEGF-------ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDE 162
Query: 950 ATAAVD--VRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-------CDRILLLDSGR 998
+A+D +R +K ++E + T + + H D DRI +++ GR
Sbjct: 163 PLSALDAKLREQM--RKELKELQRELGITFVYVTH------DQEEALAMSDRIAVMNDGR 214
Query: 999 VLEYDTPEEL 1008
+ + TPEE+
Sbjct: 215 IEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 3e-16
Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 50/234 (21%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---------------VSDASAV- 224
+ +++ ++ G ++ IVG +G GK++L A++G LP + S
Sbjct: 25 VRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84
Query: 225 ---IRGT-VAYVPQVSW-IFN--ATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLD 272
+RG +A + Q N T+ D I L G ++A++
Sbjct: 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE--------- 135
Query: 273 LLPGGDVTEIGERGVN------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
LL + + + +SGG +QRV +A A+ + I D+P +ALD Q
Sbjct: 136 LL---EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQ 192
Query: 327 VFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+ D + ++ EL G + +T+ L ++++ DR++++++G + E G E++ +N
Sbjct: 193 ILDLLKDLQREL-GMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 4e-16
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
VL G+ ++ VG+VG GAGK+++L + + G +L+ G D+
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 862 KILGIIPQSPVL---FSG--TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLG 912
+ + +PQ L F V P F ++ D RA ++ A+ R G
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETD------RAAVERAMERT--G 128
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIRE 968
+ + S G+RQ + L+RAL + + +L+LDE TA++D VRT L++ + +
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR-RLVD 187
Query: 969 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ K+ I H L+ CD ++LL GRV P ++L+ +
Sbjct: 188 DGKTAVAAI--HDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 5e-16
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASA 223
+ + N+NL+I G + ++G +G GKT+ LI GE+ + +
Sbjct: 11 GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 224 V-IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPG 276
V +R + YV Q +F + TV +NI L + + + D L + L P
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK--WPKEKIRERAD--ELLALVGLDPA 126
Query: 277 GDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-G 334
E +R +SGGQ+QRV +ARA+ ++ + + D+P ALD Q+ + R
Sbjct: 127 ----EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQ 182
Query: 335 ELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
+ GKT V VT+ + DRI ++ G + + GT +++ +
Sbjct: 183 QELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-16
Identities = 62/254 (24%), Positives = 107/254 (42%), Gaps = 34/254 (13%)
Query: 136 LKRMEEFLLAEEK--------ILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLD 187
L+++E L E P P G + N +D R L +++
Sbjct: 287 LEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFR 344
Query: 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ--VSWIFNAT 242
I G +AIVG G GK++L+ + GEL P+S V G + Y Q + T
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG--TVKVGETVKIGYFDQHRDELDPDKT 402
Query: 243 VRDNI--LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
V + + F E +V + G D + +SGG+K R+ +A
Sbjct: 403 VLEELSEGFPDGDE-------QEVRAYLGRF-GFTGEDQEKPVG---VLSGGEKARLLLA 451
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIIL 359
+ + ++ + D+P + LD + + + + G T +LV++ +FL +V RI L
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIE-SLEALEEALL-DFEG-TVLLVSHDRYFLDRVATRIWL 508
Query: 360 VHEGMVKEEGTFED 373
V + + + EG +ED
Sbjct: 509 VEDKVEEFEGGYED 522
|
Length = 530 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-16
Identities = 76/216 (35%), Positives = 114/216 (52%), Gaps = 31/216 (14%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSL--ISAML-----GEL----PPVSDASAVIRGTV 229
L +I+LDIP G +VA++G +G GKT+L I A L G + VS A R V
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDR-KV 76
Query: 230 AYVPQVSWIF-NATVRDNILFGSAFEPARYE---KAID--VTSLQHDLDLLPGGDVTEIG 283
+V Q +F + TV DNI FG P R AI VT L L+++ + +
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL---LEMV---QLAHLA 130
Query: 284 ER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGK 339
+R +SGGQKQRV++ARA+ + + D+P ALDA V R+ R +R EL
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV-RKELRRWLRQLHEELK-F 188
Query: 340 TRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
T V VT +Q + DR++++ +G +++ GT + +
Sbjct: 189 TSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 7e-16
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 44/221 (19%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVI---------------- 225
+++L+IP G + I+G +G GK++L+ + E P + +V
Sbjct: 24 DVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVFVDGQDLTALSEAELRQ 80
Query: 226 -RGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
R + + Q FN TV +N+ F E A KA + L+L+
Sbjct: 81 LRQKIGMIFQH---FNLLSSRTVFENVAF--PLELAGVPKAEIKQRVAELLELV------ 129
Query: 281 EIGERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRG 334
+ ++ +SGGQKQRV++ARA+ +N + + D+ SALD + + + + I
Sbjct: 130 GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINR 189
Query: 335 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
EL G T VL+T+++ + ++ DR+ ++ +G + EEGT ++
Sbjct: 190 EL-GLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 7e-16
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 45/232 (19%)
Query: 162 AISIR--NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 219
ISIR N Y+ S + L +INL+I G +V + G +G GKT+L++ + G L V
Sbjct: 1 VISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLI-GGLRSVQ 58
Query: 220 DASAVIRGT----------VAYVPQVSWIFNA-------TVRDNILFGSAFEP-----AR 257
+ S + G V + +IF A T R N+ +P
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA 118
Query: 258 YEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314
E+A + L LD P N+SGGQKQRV++ARA+ + + D+
Sbjct: 119 RERARAMLEAVGLGDHLDYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADE 167
Query: 315 PLSALDAHVGRQVFDRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEG 363
P +ALD+ GR V + + +L+ G T ++VT+ L DRI+ + +G
Sbjct: 168 PTAALDSKSGRDVVE--LMQKLAREQGCTILIVTHDNRILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 8e-16
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 23/226 (10%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 858
L G+S I V +G +G GKS+ L R+ +L G I IDG +I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 859 --DLRKILGIIPQSPVLFSGTV--------RFNLDPFSEHSDADLWEALERAHLKDAIRR 908
+LRK +G++ Q P F ++ R N + + E L+ A L D ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968
++ E+ S GQ+Q L ++RA+ +L++DE +A+D + A +++ I E
Sbjct: 139 -------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE 191
Query: 969 EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEG 1013
K T++I+ H + D+ G ++EYD +++ +N
Sbjct: 192 LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
|
Length = 250 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 9e-16
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 819 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI----LGIIPQSPVLF 874
I+G +G+GKS++L + R++E G++LIDG DIA +LR++ + ++ QS L
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 875 SG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR-------NSLGLDAQVSEAGENFSV 926
TV N+ F LE + A R +GL+ + + S
Sbjct: 115 PHRTVLENV-AFG----------LEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSG 163
Query: 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------TMLIIAH 980
G +Q + L+RAL IL++DEA +A+ D LI++ +++E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 981 RLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
L+ + DRI ++ GR+++ TPEE+L+N
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-16
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 24/276 (8%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI--- 863
+SF IP + VG +G GAGKS+ L L ++ G++ ++G D + LR I
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 864 ----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 919
L + P L S V L E D + E L+ L L+ +
Sbjct: 103 MGQKLQLWWDLPALDSLEV---LKLIYEIPDDEFAERLDFL-------TEILDLEGFLKW 152
Query: 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 977
S+GQR L+ ALL K+L LDE T +DV A I++ ++E E + T+L+
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 978 IAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1036
H + I CDR+LL+D G+++ T +L F + + S +
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ----EQFGPYKEFSVELKQAKSLSQLA 268
Query: 1037 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALA 1072
N + D R A A++ +
Sbjct: 269 LLGDVTIEEGLNIKNDVSREESADIIAKLLAEFEVR 304
|
Length = 325 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 43/236 (18%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVS 219
I +R+ + K L +I+LDIP G + A++G +G GK++L+ + +P
Sbjct: 1 IELRDLNVYYGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 220 DASAV-IRGTVAYVPQVSWI---------------FNATVRDNILFG---SAFEPARYEK 260
D V + G Y V + F ++ DN+ +G +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 261 AIDVTSLQHDLDLLPGGDVTEIGER--GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
+L+ L E+ +R + +SGGQ+QR+ +ARA+ + +V + D+P SA
Sbjct: 118 ERVEEALR--KAALWD----EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 319 LDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILVHEGMVKEEG 369
LD + + I EL + T V+VT H + Q DR + G + E G
Sbjct: 172 LDP-ISTAKIEELIA-ELKKEYTIVIVT---HNMQQAARVADRTAFLLNGRLVEFG 222
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 1e-15
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------------VSDASAVIRGTVA 230
+++ + G + ++G G GKT+L+ + L P V D S V R
Sbjct: 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79
Query: 231 YVPQVSWIFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289
+ T R+N+ F +R E + L L LL D R
Sbjct: 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----RRVGEF 134
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349
S G KQ+V++ARA+ + + + D+P S LD R+ D + + G+ + + H
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS---H 191
Query: 350 FLSQV----DRIILVHEGMVKEEGTFEDL 374
+ +V DR+I++H+G V EG+ E L
Sbjct: 192 IMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 31/240 (12%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPV 218
AI I N + E+ L NINLDIP + A++G +G GK++L+ ++ + +L P V
Sbjct: 1 AIEIENLNLFY---GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV 57
Query: 219 SDASAVI----------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAI 262
V+ R V V Q F ++ DNI +G + +K +
Sbjct: 58 RIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 263 D---VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 319
D SL+ L + + + +SGGQ+QR+ +ARA+ +V + D+P SAL
Sbjct: 118 DEIVEESLKKAA--LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 320 DAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
D ++ + EL K T V+VT+ + +++ DR ++G + E G E + N
Sbjct: 176 DPIATGKIEELIQ--ELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-15
Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 35/220 (15%)
Query: 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI--- 225
L+ N +P + A+ G +G GKTSLI+ + G P + DA I
Sbjct: 13 FALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLP 72
Query: 226 --RGTVAYVPQVSWIF-NATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTE 281
+ + YV Q + +F + TVR N+ +G A++++ + + ++H LD PG
Sbjct: 73 PEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG----- 127
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 341
+SGG+KQRV++ RA+ + ++ + D+PL++LD R++ R L +
Sbjct: 128 ------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER--LRDEIN 179
Query: 342 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 377
+ + H L +V DR++++ G VK G E++ +
Sbjct: 180 IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 24/243 (9%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++F DV R+ VL GL+F++ +KV ++G +G+GKS++L L + ++ G+I
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 847 IDGFDI-------AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEA--- 896
++G + D + + + + ++F FNL P D ++ EA
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQS---FNLFPHKTVLD-NVTEAPVL 114
Query: 897 ---LERAHLKD-AIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
+ RA + A+ + +GL + S GQ+Q ++++RAL R K+++ DE T
Sbjct: 115 VLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVT 174
Query: 952 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+A+D + IR TML++ H + + DR+ D GR++E P+E+
Sbjct: 175 SALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 1009 LSN 1011
Sbjct: 235 FRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-15
Identities = 58/239 (24%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 787 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
++ + R+ P V +S ++ + ++G GAGKS+++ LF + + + G
Sbjct: 5 LEMRGITKRF----PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 845 ILIDG--------FDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWE 895
I +DG D + G+ G++ Q +L TV N+ E
Sbjct: 61 IRVDGKEVRIKSPRDAIRLGI-------GMVHQHFMLVPTLTVAENIILGLE-PSKGGLI 112
Query: 896 ALERAH--LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953
+A +K+ R GL + SVG++Q + + +AL R +++L+LDE TA
Sbjct: 113 DRRQARARIKELSER--YGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 954 V-DVRTDALIQ--KTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEE 1007
+ D L + + + E K T++ I H+L ++ DR+ +L G+V+ D E
Sbjct: 171 LTPQEADELFEILRRLAAEGK--TIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAE 227
|
Length = 501 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 30/215 (13%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT------------ 228
L ++L++P G + ++G G GKT+L+ ++G LP S + G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-KSGSIRLDGEDITKLPPHERAR 74
Query: 229 --VAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE--IG 283
+AYVPQ IF TV +N+L G A P R + I +L P V + +G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR-SRKIP----DEIYELFP---VLKEMLG 126
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTR 341
RG ++SGGQ+Q++++ARA+ + + + D+P + + + + R IR G
Sbjct: 127 RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIRRLRAEGGMAI 185
Query: 342 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 375
+LV L F ++ DR ++ G V G ++L
Sbjct: 186 LLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-15
Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 50/242 (20%)
Query: 157 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216
+S P + +R S+D K + N++L I G + ++G +G GKT+++ ++
Sbjct: 9 SSLSPLVELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLR-LIAGFE 64
Query: 217 PVSDASAVIRG-TVAYVP----QVSWIFNA-------TVRDNILFG--------SAFEPA 256
++ G + +VP V+ +F + TV +N+ FG + P
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP- 123
Query: 257 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDP 315
R +A+ + L+ E +R +SGGQ+QRV++ARAV + V + D+
Sbjct: 124 RVMEALRMVQLE------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDES 171
Query: 316 LSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEE 368
LSALD + +Q ++ EL G T V VT +Q L+ DRI+++ +G ++++
Sbjct: 172 LSALDYKLRKQ-----MQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226
Query: 369 GT 370
GT
Sbjct: 227 GT 228
|
Length = 375 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-15
Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 21/238 (8%)
Query: 784 SGSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
S I+ +++ +Y+ + L+ +SF + + + I+G G+GKS+ + + ++E E
Sbjct: 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES 61
Query: 843 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFSGT-----VRFNLDPFSEHSDADLWEA 896
G+I+IDG + + + D+R +G++ Q+P F G V F L E+ E
Sbjct: 62 GQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL----ENKGIPHEEM 117
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
ER + +A+ +G+ S GQ+Q ++++ A+ R KI++LDEAT+ +D
Sbjct: 118 KERVN--EAL--ELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 957 --RTDALIQ--KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010
R + LI+ K IR++++ T++ I H L+ + DR+L++ +G+V TP EL S
Sbjct: 174 EGRLE-LIKTIKGIRDDYQ-MTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229
|
Length = 279 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 61/235 (25%), Positives = 125/235 (53%), Gaps = 25/235 (10%)
Query: 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 850
D+ Y P+ L G++F + V ++G GAGKS++ I++ G +LI G
Sbjct: 6 DLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 851 DIA--KFGLMDLRKILGIIPQSP--VLFSGTVR-------FNLDPFSEHSDADLWEALER 899
I K L+++RK +GI+ Q+P LF+ TV NL S+ E +E+
Sbjct: 65 PIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG-LSK-------EEVEK 116
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+K+A++ +G++ ++ + S GQ++ ++++ L + +I+VLDE T+ +D
Sbjct: 117 -RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGA 173
Query: 960 ALIQKTIRE-EFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 1012
+ I K + + + T++I H ++ + + D++ ++ G++++ TP+E+ S+
Sbjct: 174 SQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-15
Identities = 59/222 (26%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 861
V+ +S T+ + VG++G GAGK++ + IV + G I+ID DI+ L R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 862 KILGIIPQSPVLFS---------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 912
+ +G +PQ +F ++ D +E + E +E H++ R+S+
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL--RDSM- 134
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972
G++ S G+R+ + ++RAL K ++LDE A VD + I++ I S
Sbjct: 135 --------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDS 186
Query: 973 -CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+LI H + + C+R ++ G ++ + TP E+L +E
Sbjct: 187 GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 70/238 (29%), Positives = 120/238 (50%), Gaps = 32/238 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLMD 859
L+ +S +P G++G +GAGKS TL R V LER G +++DG D+ +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKS----TLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 860 L---RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHL-KDAIRRNS----- 910
L R+ +G+I Q L S F ++ LE + KD I+R
Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVF----------GNVALPLELDNTPKDEIKRKVTELLA 126
Query: 911 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969
+GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T I + ++E
Sbjct: 127 LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEI 186
Query: 970 FKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS-KMVQST 1023
+ T+L+I H ++ + CD + ++ +G ++E T E+ S+ + + K ++ST
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-15
Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 216
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 217 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 262
P A +R V V Q ++ + TV++N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA----PCRVLGLS 114
Query: 263 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 322 HVGRQVFDRCIRGELSGK--TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 370
+ Q+ I EL+ T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-15
Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV----IR 226
P L N++ + G + IVG TG GK++LI A+ L D S + +R
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLR 81
Query: 227 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286
++ +PQ +F+ T+R N+ D D ++ + E G
Sbjct: 82 SSLTIIPQDPTLFSGTIRSNL---------------DPFDEYSDEEIY---GALRVSEGG 123
Query: 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 346
+N+S GQ+Q + +ARA+ V + D+ +++D + + IR E + T + + +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEFTNSTILTIAH 182
Query: 347 QLHFLSQVDRIILVHEGMVKEEGT 370
+L + D+I+++ G VKE
Sbjct: 183 RLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 4e-15
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER----GRILIDGFDI--AKFG 856
LHG+S + ++G +G GKS+ L L R+ + +E G I +G +I +K
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHL----KD 904
L++LRK +G++ Q P F +V N+ E D + E+L++A + KD
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ RN+ + FS GQ+Q + ++RAL R K+++LDE T+A+D + + I++
Sbjct: 140 NLDRNA-----------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188
Query: 965 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
T+ E T +++ H L D+ L +G ++E EE+
Sbjct: 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 5e-15
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 173 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDA 221
+ L NI+L + G +AI G +G GK+ SLIS G L VS
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 222 SA-VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
R V+Y Q +F TV DN++F R ++A + L L +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLA-RFAL----PDS 125
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
+ + +SGG+KQR+++ R + + + D+ SALD R +
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172
|
Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 5e-15
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 21/216 (9%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-R 861
+L G+S +P + ++GR G GK+++L TL ++ ++ G I +DG DI K + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 862 KILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALER-AHLKDAIRRNSLGLDA 915
+ +PQ +F TV NL S E E LK+ + R
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR------ 128
Query: 916 QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSC 973
G + S GQ+Q L+++RAL+ R K+L+LDE T + I + IR
Sbjct: 129 -----GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGM 183
Query: 974 TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEEL 1008
+L++ L+ + DR +++ GRV+ +EL
Sbjct: 184 AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-15
Identities = 48/188 (25%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 798 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG--FDIAKF 855
P P VL GL+F + + ++G GAGKS++L L ++ + G +LIDG D ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 856 GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSL 911
GL++ R+ +G++ Q P LF+ V + + L L A ++ +R ++
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADV------DQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 971
G S G+++ ++++ A+ R +L+LDE TA +D + +R
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 972 SCTMLIIA 979
++I+
Sbjct: 176 EGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 17/221 (7%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E+V R+ L +SF++ + G++G GAGK++ + + I+ + G +L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 905
DG + +I G +P+ L+ V L ++ EA R
Sbjct: 59 FDG---KPLDIAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR------ 108
Query: 906 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
I L L ++ E S G +Q + A++ ++L+LDE + +D L++
Sbjct: 109 IDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK 168
Query: 964 KTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEY 1002
IRE ++ +I+ H++ + + CDR+LLL+ GR + Y
Sbjct: 169 DVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 6e-15
Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 34/252 (13%)
Query: 773 ESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 832
E+ PG S+ +I V Y + V++GLSFT+ + G++G GAGKS++
Sbjct: 28 EAKASIPGSMSTVAIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIAR 85
Query: 833 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTVRFNLDPFSEH--- 888
+ + + G+I + G + + +I G++PQ L TVR NL F +
Sbjct: 86 MILGMTSPDAGKITVLGVPVPARARLARARI-GVVPQFDNLDLEFTVRENLLVFGRYFGM 144
Query: 889 ----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944
+A + LE A L+ DA+VS+ S G ++ L+L+RAL+ ++
Sbjct: 145 STREIEAVIPSLLEFARLESKA-------DARVSD----LSGGMKRRLTLARALINDPQL 193
Query: 945 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH------RLNTIIDCDRILLLDSG 997
L+LDE T +D LI + +R + T+L+ H RL CDR+ +L++G
Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAG 248
Query: 998 RVLEYDTPEELL 1009
R + P L+
Sbjct: 249 RKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-15
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 43/235 (18%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL 857
VL G++ IP + ++G +G+GKS++L R++EL G + +DG DI K +
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-----------HSDADLWE----ALERAHL 902
++LR+ + ++ Q P NL F S +L E ALE+A L
Sbjct: 78 IELRRRVQMVFQIPNPIP-----NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
D ++ + L A S GQ+Q L ++RAL + ++L+ DE TA +D A I
Sbjct: 133 WDEVK-DRLDAPAG------KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 963 QKTIREEFKSCTMLIIAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011
+ E K T++++ H R++ D + L G+++E+ E+ +N
Sbjct: 186 ESLFLELKKDMTIVLVTHFPQQAARIS-----DYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 7e-15
Identities = 64/242 (26%), Positives = 120/242 (49%), Gaps = 24/242 (9%)
Query: 786 SIKFEDVVLRYRPELPPVLHGL---SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
SIKFE+V Y P P GL SF + V +VG TG+GKS+++ +++
Sbjct: 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS 61
Query: 843 GRILIDGFDI----AKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 896
G I I G+ I L LRK + ++ Q P LF TV +++ ++ EA
Sbjct: 62 GTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
E+A +++ +GL + S GQ + ++++ + +IL LDE A +D
Sbjct: 122 KEKA--LKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
Query: 956 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009
+K + + FK T++++ H ++ + + D +L+L+ G+++++ +P+E+
Sbjct: 178 PEG----RKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1010 SN 1011
S+
Sbjct: 234 SD 235
|
Length = 287 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 8e-15
Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 64/254 (25%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I E++ L Y P+L +S T+ P +++G+VGR GAGKS++L L +E + G +
Sbjct: 4 ITLENLSLAYGDR--PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALER------ 899
LR +G + Q P L TV + +L E L
Sbjct: 62 RPK---------GLR--VGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEAYA 106
Query: 900 ------AHLKDAIRRNSLGLDAQVSEAG-----------------ENFSVGQRQLLSLSR 936
L + LD EA + S G R+ ++L+R
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIR--EEF---KSCTMLIIAH-R--LNTIIDC 988
ALL +L+LDE T +D+ ++I E++ T+++++H R L+ +
Sbjct: 167 ALLEEPDLLLLDEPTNHLDL-------ESIEWLEDYLKRYPGTVIVVSHDRYFLDNV--A 217
Query: 989 DRILLLDSGRVLEY 1002
IL LD G++ Y
Sbjct: 218 THILELDRGKLTPY 231
|
Length = 530 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 8e-15
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGELPPV-------SDASAVIRGTVAYVPQ---VSWIFN 240
G L+ ++G G GKT+L+ A+LG +PP + + YVPQ +W F
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFP 65
Query: 241 ATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRV 297
+V ++ G R D +++ L + +TE+ +R V +SGGQ+QRV
Sbjct: 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV---GLTELADRPVGELSGGQRQRV 122
Query: 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDR 356
+ARA+ + V + D+P + LD + + I +G ++ T+ L ++ DR
Sbjct: 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDR 182
Query: 357 IILVHEGMVKEEGTFEDLSN 376
++L++ G V +GT + L +
Sbjct: 183 VVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 42/246 (17%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+F++V + P VLH + I + V I+G +G+GKS++L + ++ E+ G ++
Sbjct: 2 IEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 847 IDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE------ 898
+DG + K +R+ G++ Q +F L P ALE
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQ---------QFYLFPH--------LTALENVMFGP 102
Query: 899 ---RAHLKDAIRRNSLGLDAQV--SEAGENF----SVGQRQLLSLSRALLRRSKILVLDE 949
R K+ + + L A+V +E ++ S GQ+Q ++++RAL + K+++ DE
Sbjct: 103 LRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162
Query: 950 ATAAVD--VRTDAL-IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTP 1005
T+A+D +R + L + + + EE TM+I+ H + R++ +D GR+ E P
Sbjct: 163 PTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 1006 EELLSN 1011
+ L+ N
Sbjct: 221 QVLIKN 226
|
Length = 240 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 57/224 (25%), Positives = 109/224 (48%), Gaps = 30/224 (13%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--------VELERGRILIDGFDI-- 852
+ ++ I + I+G +G GK+++L ++ R+ VE G+I G DI
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE---GKIYFKGQDIYD 74
Query: 853 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--------PFSEHSDADLWEALERAHLKD 904
+ + + RK +G++ Q P F ++ N+ D + E+L++A L D
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD 134
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
++ ++++ G S GQ+Q L ++RAL ++++LDE T+A+D I+K
Sbjct: 135 EVKS-------ELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187
Query: 965 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPE 1006
+ E ++ T++I+ H + I D I + G ++EY T E
Sbjct: 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 9e-15
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 44/223 (19%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP------VSDAS----- 222
K +P + +++L++ G + ++G G GKT+ + + GEL P ++ S
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR 70
Query: 223 AVIRGTVAYVPQVSWIFNA-----TVRDNILFGSAF-------EPARYEKAIDVTSLQHD 270
R ++ Y PQ F+A TVR+++ F + E + V L
Sbjct: 71 KAARQSLGYCPQ----FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
+ +SGG K+++S+A A+ V + D+P S LD R ++D
Sbjct: 127 ANKRAR-----------TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD- 174
Query: 331 CIRGELSGKTRVLVTNQLH---FLSQVDRIILVHEGMVKEEGT 370
I G++ +L T+ + L DRI ++ +G ++ G+
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALC--DRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 9e-15
Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 14/232 (6%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ ED+ RY+ + L GLS +IP K ++G GAGKS++L L I +RGR+
Sbjct: 5 IEVEDLHFRYK-DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTV--RFNLDPFSEHSDADLWEALERAHL 902
+ G ++ +R +G++ Q P +FS TV P + D D E R
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD--EVERRV-- 119
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
++A++ ++ + + + S GQ++ ++++ L ++VLDE A +D R +
Sbjct: 120 EEALK--AVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETL 177
Query: 963 QKTIREEFKSCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ + +I+A H ++ + D++++L GRVL LL++E
Sbjct: 178 MEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDK-SLLTDE 228
|
Length = 274 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 36/243 (14%)
Query: 161 PAISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 219
+S+RN + LN ++L+I G + IVG +G GK++L + G P S
Sbjct: 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS 61
Query: 220 -------------DASAVIRGTVAYVPQVSW-IFNA--TVRDNILFGSAFEPARYEKAID 263
+ V V Q + N TV + EP R
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-----SEPLRPHGLSK 116
Query: 264 VTSLQHDLDLLPGGDVTEIGE-----RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
S Q +LL D + R +SGGQ+QR+++ARA+ + I D+P SA
Sbjct: 117 --SQQRIAELL---DQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171
Query: 319 LDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 375
LD V Q+ + ++ E G T + +++ L + + DRI ++ G + E G E+L
Sbjct: 172 LDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
Query: 376 NNG 378
++
Sbjct: 231 SHP 233
|
Length = 252 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVA------- 230
L ++NL+I G +VAI+G +G GK++L+ ++ G + P + + G
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-TSGEILFNGVQITKLKGKE 75
Query: 231 ---YVPQVSWIF-------NATVRDNILFG------------SAFEPARYEKAIDVTSLQ 268
+ IF +V +N+L G F +A+D +L+
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD--ALE 133
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
+ +L + +R +SGGQ+QRV++ARA+ + + D+P+++LD ++V
Sbjct: 134 R-VGILD-----KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVM 187
Query: 329 DRCIR-GELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 375
D + G T ++ LH + DRII + G + +G +L+
Sbjct: 188 DILKDINQEDGITVIVN---LHQVDLAKKYADRIIGLKAGRIVFDGPASELT 236
|
Length = 258 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 60/226 (26%), Positives = 109/226 (48%), Gaps = 26/226 (11%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
L ++ +P V ++G +G+GKS++L + + + + GRI ++G D + D RK
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD-RK 73
Query: 863 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
I G + Q LF TVR N+ A E + K R L Q+ G
Sbjct: 74 I-GFVFQHYALFKHLTVRDNI--------AFGLEIRKHPKAKIKARVEELLELVQLEGLG 124
Query: 922 ENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEF 970
+ + S GQRQ ++L+RAL ++L+LDE A+ DA ++K +R +E
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL----DAKVRKELRSWLRKLHDEV 180
Query: 971 KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
T+ + + + DRI+++ +G++ + +P+E+ + + F
Sbjct: 181 HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 64/213 (30%), Positives = 115/213 (53%), Gaps = 27/213 (12%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLMD 859
VL ++ I P + V + G +G+GK+++L + + ++ G + + G ++ ++ L+
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 860 LRKILGIIPQSPVLF-SGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLG 912
LR+ +G I Q+ L T R N L P + +A RA L+ ++G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEA---RERARAMLE------AVG 130
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIRE 968
L + N S GQ+Q ++++RAL+ R K+++ DE TAA+D ++ L+QK RE
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 969 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000
+ CT+LI+ H N I+D DRI+ ++ G++L
Sbjct: 191 --QGCTILIVTHD-NRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 42/242 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 855
+L ++ I + +G +G GKS+ L R+ + +G + IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFN----------------LDPFSEHS--DADLWEAL 897
++ LR +G++ Q P F ++ N LD E S LWE
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-- 137
Query: 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
L D ++ ++ S GQ+Q L ++RA+ + +L++DE +A+D
Sbjct: 138 ---ELGDRLKDSAF-----------ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPV 183
Query: 958 TDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
+I+ I+E K+ T++++ H + DR+ SGR++EY+T +E+ N SS
Sbjct: 184 ATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSK 243
Query: 1017 SK 1018
+K
Sbjct: 244 TK 245
|
Length = 251 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+ GLSFT+ + + + G G GK+++L L ++ + G + +G +A+ R
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 862 KILGIIPQSPVLFSGTVRFNLD---PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918
IL + + + NL + + +AL L + L
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQL----- 128
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968
S GQ++ L+L+R L R+ + +LDE T A+D AL+ +R
Sbjct: 129 ------SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 48/195 (24%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E++ L P+ +L LSF I P D++ I G +G GKSS+ L + GRI
Sbjct: 1 IELENLSL-ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI- 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
G+ + +L +PQ P L GT L++ +
Sbjct: 59 ---------GMPEGEDLL-FLPQRPYLPLGT------------------------LREQL 84
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
+ S G++Q L+ +R LL + K + LDEAT+A+D ++ + + +
Sbjct: 85 IYPW----------DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL 134
Query: 967 REEFKSCTMLIIAHR 981
+E T++ + HR
Sbjct: 135 KELG--ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 16/213 (7%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK-FGLMDLRK 862
FT+P I GR+G+GK++++ + + + G I+++G FD K L ++
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 863 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+G + Q LF +VR NL + + ER + + LG+ +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPS-----ERRISFERVIE-LLGIGHLLGRLP 129
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLII 978
S G++Q +++ RALL ++L++DE AA+D R ++ + + EF +L +
Sbjct: 130 GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFG-IPILYV 188
Query: 979 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
+H L ++ DR+++L+ GRV E+ +
Sbjct: 189 SHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 2e-14
Identities = 62/259 (23%), Positives = 115/259 (44%), Gaps = 31/259 (11%)
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE- 841
+ G I+ + + + Y VL LS I + + ++G++G GK+++L + V+
Sbjct: 2 ACGGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG 59
Query: 842 -RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSDADLWE- 895
GRI I D+ ++ L ++ Q+ LF + F + AD+ E
Sbjct: 60 LTGRIAIADRDLTH--APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER 117
Query: 896 ---ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
AL+ L DA L AQ+S G +Q ++++RA+ +L+LDE +
Sbjct: 118 VADALKLVGLGDAAAH----LPAQLSG-------GMQQRIAIARAIAIEPDVLLLDEPLS 166
Query: 953 AVDVRTDALIQ---KTIREEFKSCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEEL 1008
A+D A ++ + EE T+L + H + + + D+ ++ GR+ + P+ L
Sbjct: 167 ALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
Query: 1009 LSNEGSSFSKMVQSTGAAN 1027
F+ + GAAN
Sbjct: 227 YDAPADGFA--AEFLGAAN 243
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 51/236 (21%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ ++V +R + +L LS+ + P + IVG GAGK+++L+ L G +
Sbjct: 32 IELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT 89
Query: 847 IDGFDIAKFGLM-DLRKILGIIPQSPVL-----------------FSGTVRFNLDPFSEH 888
+ G K + +LRK +G++ S L F ++ + +
Sbjct: 90 LLGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA- 146
Query: 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948
E L A LG + S G+++ + ++RAL++ ++L+LD
Sbjct: 147 ------EDLAAAQWLL----ELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 949 EATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVL 1000
E +D+ + + E + +L + H I C LLL G V+
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 53/205 (25%), Positives = 95/205 (46%), Gaps = 15/205 (7%)
Query: 796 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855
Y +L+ +SF++ + I G +G GKS++L + ++ G +L +G DI+
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
R+ + Q+P LF TV NL P+ + + A D + R L
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-----DPAIFLDDLER--FALP 127
Query: 915 AQVSEAGEN-FSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREE 969
+ S G++Q +SL R L K+L+LDE T+A+D + +I + +RE
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVRE- 186
Query: 970 FKSCTMLIIAHRLNTIIDCDRILLL 994
++ +L + H + I D+++ L
Sbjct: 187 -QNIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 43/234 (18%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 859
+ G+S T+ +G+VG +G+GKS++ L R++ +G I DG DI +
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 860 LRKILGIIPQSPVLFSGTVRFNLDP--------------FSEHSDADLWEALERAHLKDA 905
LR+ + ++ Q P + +L P A E +R +A
Sbjct: 361 LRRRMQVVFQDP--YG-----SLSPRMTVGQIIEEGLRVHEPKLSAA--ERDQRV--IEA 409
Query: 906 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ +GLD A + FS GQRQ ++++RAL+ + ++++LDE T+A+D +Q
Sbjct: 410 LE--EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRS----VQA 463
Query: 965 TIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+ + + + L I+H L + C R++++ G+++E E + +N
Sbjct: 464 QVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+L L+ TI I+G +G+GKS++LN + + + + G++ ++G + K
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 863 I----LGIIPQSPVLF-SGTVRFNLD---PFSEHSDAD----LWEALERAHLKDAIRRNS 910
LG + Q+ L + TV NLD + + S + EALE+ L +
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL-------N 125
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 970
L L ++ E S G++Q ++L+RA+L+ +++ DE T ++D + + + E
Sbjct: 126 LKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 971 KSCTMLIIA-HRLNTIIDCDRILLL 994
+II H DR++ L
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 69/244 (28%), Positives = 117/244 (47%), Gaps = 32/244 (13%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPPVS 219
I + N FS+ + +E L N++ +I G VAI+G G GK S IS +L G L P S
Sbjct: 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGK-STISKILTGLLKPQS 63
Query: 220 -----DASAVIRGTVAYV-PQVSWIFN--------ATVRDNILFG---SAFEPARYEKAI 262
D + + + + ++ IF ATV D+I FG P + + I
Sbjct: 64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDII 123
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
D + + ++ + + N+SGGQKQRV++A + N ++ IFD+ S LD
Sbjct: 124 DDLAKKVGMEDY-------LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 323 VGRQVFDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 379
R++ I +L KT + +T+ + D++I+ EG + +G +++ NN E
Sbjct: 177 GKREIKK--IMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
Query: 380 LFQK 383
+ +K
Sbjct: 235 ILEK 238
|
Length = 271 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-14
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAV 224
L +++L+I G L+A++G +G GKT+L+ A+ G + ++ A
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 225 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
RG + + V DN+ FG + KA + L L+ GD
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADIAERVADALKLVGLGDAAA--H 133
Query: 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRV 342
+SGG +QR+++ARA+ DV + D+PLSALDA++ + + EL T +
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 343 LVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
VT +Q L+ D+ ++ +G + G + L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 63/229 (27%), Positives = 121/229 (52%), Gaps = 9/229 (3%)
Query: 787 IKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
++ E++V +Y E L+G+SF+I + V I+G+ G+GKS+ + + E G++
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 846 LIDGFDIAKFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 903
IDG + + +LR+ +G++ Q+P TV ++ E+ E ++R +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--VD 122
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
+A+ ++ LD + E S GQ+Q ++++ + R +I++LDE+T+ +D I
Sbjct: 123 EALLAVNM-LDFKTREPAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180
Query: 964 KTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010
+ I E E T+L I H L+ DRIL++ +G +++ P EL +
Sbjct: 181 RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 3e-14
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 342
G+ V++SGGQ+QRVS+ARA+ +V +FD+P SALD + +V + GKT V
Sbjct: 147 GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 206
Query: 343 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+VT+++ F V +I +H+G ++EEG E L N
Sbjct: 207 VVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 55/215 (25%), Positives = 110/215 (51%), Gaps = 9/215 (4%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
L+ ++F P + ++ ++G GAGKS++ I++ G +LI G I K + ++RK
Sbjct: 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRK 78
Query: 863 ILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 920
+G++ Q+P +FS TV ++ F + L E + A+ LGL+
Sbjct: 79 FVGLVFQNPDDQIFSPTVEQDI-AFGP-INLGLDEETVAHRVSSALH--MLGLEELRDRV 134
Query: 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII-- 978
+ S G+++ ++++ + ++LVLDE TA +D + + + + ++ M +I
Sbjct: 135 PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFS 194
Query: 979 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
H+L+ + + D I ++D GR++ Y T EE+
Sbjct: 195 THQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-14
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 32/226 (14%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863
++ S + + I+G +G+GKS+++ L R++E RG IL+DG DIAK +LR++
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 864 -----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 912
++P VL V F L E E ERA +A+ +G
Sbjct: 104 RRKKISMVFQSFALLPHRTVL--ENVAFGL----EVQGVPKAEREERAL--EALEL--VG 153
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972
L+ + S G +Q + L+RAL IL++DEA +A+ D LI+ +++E
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSAL----DPLIRTEMQDELLE 209
Query: 973 C------TMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
T++ I H L+ + DRI ++ G +++ TPEE+L N
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 56/229 (24%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 849
+ + LP + F + + GI G +GAGKS++L + + + + G I+++G
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
Query: 850 --FDIAKFGLMDL----RKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEA-L 897
FD K ++L RKI G++ Q LF VR F L D + L
Sbjct: 60 VLFDSRK--KINLPPQQRKI-GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELL 116
Query: 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
+ L + R L S G++Q ++L+RAL + ++L+LDE +A+D
Sbjct: 117 DLLGLDHLLNRYPAQL-----------SGGEKQRVALARALAAQPELLLLDEPFSALDRA 165
Query: 958 TDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003
+ +++ K+ ++ + H L+ DRI++++ GR+
Sbjct: 166 LRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 71/252 (28%), Positives = 117/252 (46%), Gaps = 42/252 (16%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER-- 842
SI+ +V R+ L +S IP + V ++G +G+GK+ TL R++ LER
Sbjct: 2 SIEVRNVSKRF--GDFVALDDVSLDIPSGELVALLGPSGSGKT----TLLRLIAGLERPD 55
Query: 843 -GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL------DPFSEHSDADLW 894
G IL G D + + R + G + Q LF TV N+ P SE
Sbjct: 56 SGTILFGGEDATDVPVQE-RNV-GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEA-- 111
Query: 895 EALERAH-LKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
E + H L ++ + L AQ+S GQRQ ++L+RAL K+L+LDE
Sbjct: 112 EIRAKVHELLKLVQLDWLADRYPAQLSG-------GQRQRVALARALAVEPKVLLLDEPF 164
Query: 952 AAVDVRTDALIQKTIREEFK------SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004
A+ DA ++K +R + T + + H ++ DR+++++ GR+ + T
Sbjct: 165 GAL----DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220
Query: 1005 PEELLSNEGSSF 1016
P+E+ + S F
Sbjct: 221 PDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 5e-14
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 44/250 (17%)
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
S I F +V RY +L V+ GLSF + + G++G GAGK++ L L + +
Sbjct: 4 SVAPIDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61
Query: 843 GRILIDGFDI---AKFGLMDLRKILGIIPQSPVL---FSGTVRFNLDPFSEH---SDADL 893
G I + G + A+ R+ +G++PQ L F TVR NL F + S A
Sbjct: 62 GSISLCGEPVPSRARHA----RQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLSAAAA 115
Query: 894 WEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
LE A L++ DA+V E S G ++ L+L+RAL+ +LVLDE
Sbjct: 116 RALVPPLLEFAKLENKA-------DAKVGE----LSGGMKRRLTLARALVNDPDVLVLDE 164
Query: 950 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAH------RLNTIIDCDRILLLDSGRVLEY 1002
T +D + L+ + +R T+L+ H RL CDR+ +++ GR +
Sbjct: 165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRLCVIEEGRKIAE 219
Query: 1003 DTPEELLSNE 1012
P L+ +E
Sbjct: 220 GAPHALIESE 229
|
Length = 306 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 180 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP----------------PVSDA 221
T+L+ I+L++ G +VAI+G +G GKT+L+ + L E P +S
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 222 SAVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP-- 275
+IR +V V FN TV +NI+ G P + + +LL
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG----PVIVKGEPKEEATARARELLAKV 132
Query: 276 --GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
G T R +SGGQ+QRV++ARA+ +V +FD+P SALD + +V + IR
Sbjct: 133 GLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN-TIR 188
Query: 334 GELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 369
K T V+VT+++ F V DR I + +G + E+G
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 69/255 (27%), Positives = 118/255 (46%), Gaps = 52/255 (20%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
I + + F + A L +++ + G VAIVG G GK++L + G L P
Sbjct: 4 EIIRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--- 59
Query: 221 ASAVIRGTVAYVP-----------QVSWIFN--------ATVRDNILFGSAFEP------ 255
+ I TV + QV +F ATV+D++ FG E
Sbjct: 60 EAGTI--TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG--LENIGVPRE 115
Query: 256 ---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312
R ++A+ ++ L+ P +SGGQKQRV++A + D+ I
Sbjct: 116 EMVERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIIL 164
Query: 313 DDPLSALDAHVGRQ-VFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369
D+ S LD GR+ V + R ++ + G T + +T+ L +Q DR+I++++G + EEG
Sbjct: 165 DEATSMLDP-RGRREVLETVRQLKEQ-KGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 370 TFEDLSNNGELFQKL 384
T E++ +G + Q++
Sbjct: 223 TPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 69/244 (28%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I E+V Y + VL +S IP I+G GAGKS++L+ + R+++ + G I
Sbjct: 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR----FNLDPFS---------EHSDAD 892
IDG ++ +L K L I+ Q + S TVR F P+S +
Sbjct: 60 IDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIIN-- 117
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
EA+E HL+D R LD S GQRQ ++ L + + ++LDE
Sbjct: 118 --EAIEYLHLEDLSDRY---LD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 953 AVDVRTDALIQKTIR---EEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEEL 1008
+D++ I K +R +E T++++ H +N D I+ L +G+V++ +P+E+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGK-TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 1009 LSNE 1012
+ E
Sbjct: 224 IQPE 227
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 49/236 (20%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224
ER L ++N+ IP GS VAI+G TG GK++L+ + G L P S +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78
Query: 225 ----IRGTVAYVPQV--SWIFNATVRDNILFG---------SAFEPARYEKAIDVTSLQH 269
+R V V Q +F TV +I FG A + AR + I++ L
Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAR--EMIELVGLPE 136
Query: 270 D-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--- 325
+ L P +SGGQ +RV++A + +V + D+P + LD GR
Sbjct: 137 ELLARSP-----------FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEM 184
Query: 326 -QVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379
++F + + + G T VLVT+ + ++ D+I+++H+G V +GT ++ + +
Sbjct: 185 MEMFYKLHKEK--GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238
|
Length = 290 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 55/236 (23%), Positives = 102/236 (43%), Gaps = 55/236 (23%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAV-------------- 224
++ ++ G ++ IVG +G GK+ L A++G LP + +
Sbjct: 23 GVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKEL 82
Query: 225 --IRGT-VAYVPQ-----------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSL--- 267
IRG +A + Q + +R + + E+AI++ L
Sbjct: 83 RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLR--LHGKGLSKKEAKERAIELLELVGI 140
Query: 268 ---QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
+ L P +SGG +QRV +A A+ N + I D+P +ALD V
Sbjct: 141 PDPERRLKSYP-----------HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 325 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
Q+ D + ++ E G +L+T+ L ++++ DR+ +++ G + EEG E++ N
Sbjct: 190 AQILDLLKELQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 7e-14
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 53/212 (25%)
Query: 171 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 224
S SK+ + L N++ G L AI+G +G GK++L++A+ G + + V
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 225 -----IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 278
R + YVPQ + TVR+ ++F +
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------- 109
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LS 337
RG +SGG+++RVS+A + SN + D+P S LD+ QV +R +
Sbjct: 110 ------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVM-SLLRRLADT 160
Query: 338 GKTRVLVTNQLHFLSQV----DRIILVHEGMV 365
G+T + +Q S++ D+++L+ +G V
Sbjct: 161 GRTIICSIHQP--SSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 7e-14
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 33/218 (15%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPP----------VSDASAVIRGTV 229
L +I+L + G V ++G +G GKT+L+ + G E ++ R
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD-Y 78
Query: 230 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTEIGERG 286
V Q +F N TV DNI +G + +A + LDL LPG + G+
Sbjct: 79 GIVFQSYALFPNLTVADNIAYG--LKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ-- 134
Query: 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 340
+SGGQ+QRV++ARA+ ++ + + D+PLSALDA V +R E+ G T
Sbjct: 135 --LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH-----LRTEIRQLQRRLGVT 187
Query: 341 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
++VT +Q LS DRI++++ G++++ GT +++ +
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 29/309 (9%)
Query: 75 SFILNSIPVLVTV-VSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNAN 133
+ ++I +L + + F + LG T A L L LR PL ++ ++ A
Sbjct: 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLL-FLRTPLLSAVGILPTLLTAQ 293
Query: 134 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSL 193
V+ ++ + LA K P P + +RN F++ A + INL I G L
Sbjct: 294 VAFNKIAKLELAPYKADFPRPQAFPDWKTLELRNVRFAYQDNAF--HVGPINLTIKRGEL 351
Query: 194 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAV-------IRGTVAYVPQVSWIFNA 241
V ++GG G GK++L + G P S D V R + V +F
Sbjct: 352 VFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLF-- 409
Query: 242 TVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300
D +L P EK + L H L G + +S GQK+R+++
Sbjct: 410 ---DQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN------LKLSTGQKKRLALL 460
Query: 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI-RGELSGKTRVLVTNQLHFLSQVDRIIL 359
A+ D+ + D+ + D R+ + + + GKT +++ H+ DR++
Sbjct: 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLE 520
Query: 360 VHEGMVKEE 368
+ G + E
Sbjct: 521 MRNGQLSEL 529
|
Length = 546 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 9e-14
Identities = 64/241 (26%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VELERGRILIDGFDIAKFG 856
+ G+SF I + + +VG +G+GKS ++ + G IL DG D+
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 857 LMDLRKI----LGIIPQSPVLFSGTVRFNLDP-----------FSEH---SDADLW---- 894
LR + +G+I Q P+ +L+P H S A
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARAL 136
Query: 895 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 954
E LE + + +R LDA E S GQRQ + ++ AL +L+ DE T A+
Sbjct: 137 ELLELVGIPEPEKR----LDAYPHE----LSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 955 DVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
DV A I ++E E +L I H L + DR+ ++ G ++E T E L +
Sbjct: 189 DVTVQAQILDLLKELQAELG-MAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFA 247
Query: 1011 N 1011
Sbjct: 248 A 248
|
Length = 534 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 9e-14
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 46/245 (18%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAKFG-- 856
L G+S IP ++G +G GKS+ L L R+ + + G + +DG DI + G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSD------------------ADLWE- 895
L++LRK +G++ QSP F ++R N+ P +H D +L E
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGP-RKHGDINTGLLARLLGRDDKDAEDELVER 179
Query: 896 ALERAHL----KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
+L +A L D + N+LGL S GQ+Q L ++R L +++++DE
Sbjct: 180 SLRQAALWDEVNDRLDDNALGL-----------SGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELL 1009
+A+D + I+ I E + T++++ H + I + L G ++EYD +++
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1010 SNEGS 1014
N S
Sbjct: 289 ENPES 293
|
Length = 305 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 58/259 (22%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------ELPPVSDASAVI---RGTV 229
L NI+ I G V ++G TG GK++L+SA L ++ VS S + R
Sbjct: 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79
Query: 230 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289
+PQ +IF+ T R N+ + K + L+ ++ PG + + G +
Sbjct: 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349
S G KQ + +AR+V S + + + D+P + LD + QV + ++ + T +L +++
Sbjct: 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDP-ITYQVIRKTLKQAFADCTVILSEHRIE 198
Query: 350 FLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTS 409
+ + R +++ E V++ + + L N F++ + + +++ + +
Sbjct: 199 AMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSDRLKLFPRRNSSKSK---RKP 255
Query: 410 KPAANGVDNDLPKEASDTR 428
+P + + +E DTR
Sbjct: 256 RPQIQALQEETEEEVQDTR 274
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 62/231 (26%), Positives = 111/231 (48%), Gaps = 29/231 (12%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAKFGLM 858
L +S I + V ++G +GAGKS++L + + + GRI ++G FD++ +
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 859 DLRKILGIIPQSPVLFSG-TVR----FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 913
D RK+ G + Q LF TV F L E EA RA +++ +R
Sbjct: 76 D-RKV-GFVFQHYALFPHMTVADNIAFGLKVRKERPS----EAEIRARVEELLRL----- 124
Query: 914 DAQVSEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK---TI 966
Q+ + + S GQRQ ++L+RAL K+L+LDE A+D + +++ +
Sbjct: 125 -VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183
Query: 967 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
+ T + + H ++ DR+++L+ GR+ + P+E+ + S F
Sbjct: 184 HDRLG-VTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 1e-13
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 15/220 (6%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
++ G+ T PP G++G G+GKS++L L + + G + + G D+
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 862 KILGIIPQS-----PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR--NSLGLD 914
+ + ++ Q P+ V P LW A + H + R L
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRS-----LW-AGDSPHDAAVVDRALARTELS 128
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 974
S G+RQ + ++RAL + K+L+LDE T +DVR +RE +
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 975 MLIIA-HRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
++ A H LN CD +++LD GRV+ P E+L+
Sbjct: 189 TVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA 228
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-13
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 37/232 (15%)
Query: 156 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215
+T+ L IR Y S + + E L I+LDI G +VAIVG +G GK++L++ +LG L
Sbjct: 1 MTALLELKDIRRSYPSGEEQVE--VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGCL 57
Query: 216 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-------FGSAFE-------------- 254
+ + + G AT+ + L FG F+
Sbjct: 58 DKPTSGTYRVAGQDV----------ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV 107
Query: 255 --PARYEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFI 311
PA Y L +LL + + + + +SGGQ+QRVS+ARA+ + V +
Sbjct: 108 EVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVIL 167
Query: 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 363
D+P ALD+H G +V + G T ++VT+ +Q +R+I + +G
Sbjct: 168 ADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDG 219
|
Length = 648 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-13
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+ + V Y LP + + V I+G +GAGKS++LN + +E G I
Sbjct: 1 LALDKVRYEYE-HLP---MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 905
++ GL ++ + ++ Q LF+ TVR N+ H L A ++ + DA
Sbjct: 57 VNDQSHT--GLAPYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVVDA 112
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDAL 961
+ +G+ + E S GQRQ ++L+R L+R + IL+LDE +A+D AL
Sbjct: 113 AQ--QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 999
+++ E + T+L++ H L+ +I ++ G++
Sbjct: 171 VKQLCSE--RQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-13
Identities = 66/244 (27%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 787 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
IK +V RY R + V +S + + GIVG +GAGK+++ + ++E
Sbjct: 280 IKVRNVSKRYISVDRGVVKAV-DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 843 G----RILIDGFDIAKFGLMD---LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895
G R+ + D+ K G ++ +GI+ Q L+ R LD +E +L +
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLY--PHRTVLDNLTEAIGLELPD 396
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEA-----GENFSVGQRQLLSLSRALLRRSKILVLDEA 950
E A +K I +G D + +E + S G+R ++L++ L++ +I++LDE
Sbjct: 397 --ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEP 454
Query: 951 TAAVDVRTDALIQKTI---REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006
T +D T + +I REE + T +I++H ++ ++D CDR L+ G++++ PE
Sbjct: 455 TGTMDPITKVDVTHSILKAREEMEQ-TFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPE 513
Query: 1007 ELLS 1010
E++
Sbjct: 514 EIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 83/309 (26%), Positives = 139/309 (44%), Gaps = 46/309 (14%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTS-------LISAMLGEL----PPVSDASAV 224
+ + ++NL I G + ++G +G GKT+ LI GE+ +SD V
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 225 -IRGTVAYVPQVSWIF-NATVRDNI-----LFGSAFEPARYEKAIDVTSLQHDLDLLPGG 277
+R + YV Q +F + TV +NI L G ++ R +K D +L L G
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG--WDKERIKKRAD------ELLDLVGL 123
Query: 278 DVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR---QVFDRCIR 333
D +E +R + +SGGQ+QRV +ARA+ ++ + + D+P ALD + R Q + ++
Sbjct: 124 DPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQ 182
Query: 334 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGK 390
EL GKT V VT+ + L DRI ++ G + + T +++ N + + G+
Sbjct: 183 KEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFF---GE 238
Query: 391 MEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRK----TKEGKSVL--IKQEERE 444
E + D A+G L + D G+SVL + ++ R
Sbjct: 239 SERGLRLLSLVSVADAVRRGEPADG--EPLLEGFVDRDALSDFLARGRSVLPVVDEDGRP 296
Query: 445 TGVVSFKVL 453
G V+ L
Sbjct: 297 LGTVTRADL 305
|
Length = 309 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 35/248 (14%)
Query: 168 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 227
Y S+ + L +I++ G++ IVG +G GK++LI ++ L ++ S +I G
Sbjct: 10 SYSSFG----KEILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDG 64
Query: 228 T-------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 274
+ V Q +F TV+DNI +G + EK +DV ++ L ++
Sbjct: 65 VDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML---KGEKNVDV---EYYLSIV 118
Query: 275 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
G E R V N+SGG+ QRVS+AR + +N +V + D+P SALD ++ + I
Sbjct: 119 --GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP-TSTEIIEELIV 175
Query: 334 GELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG-TFEDLSNNGELFQKLMENA 388
+L K + V H + Q RI +++G++ E T++ +N KL
Sbjct: 176 -KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFIQ- 233
Query: 389 GKMEEYVE 396
GK++E V+
Sbjct: 234 GKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-13
Identities = 67/244 (27%), Positives = 106/244 (43%), Gaps = 25/244 (10%)
Query: 781 WPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
+P + VL R + +SFT+ + +GI G GAG++ + LF
Sbjct: 251 FPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP 310
Query: 840 LERGRILIDGFDIA--------KFGLM---DLRKILGIIPQSPVLFSGTVRFNLDPFSEH 888
G IL+DG + K G+ + RK G++ + + T+ +L FS
Sbjct: 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLA-SLRRFSRR 369
Query: 889 SDADLWEALERAHLKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945
+ ERA + IRR + + + S G +Q + L+R L K+L
Sbjct: 370 GL--IDRRKERALAERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLARWLATDPKVL 423
Query: 946 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGR-VLEY 1002
+LDE T +DV A I + IRE +L+I+ L ++ DRIL++ GR V E
Sbjct: 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483
Query: 1003 DTPE 1006
D E
Sbjct: 484 DREE 487
|
Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 2e-13
Identities = 65/221 (29%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAV--I 225
P L NINL I G + I+G G GK++L + G L P D S + I
Sbjct: 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75
Query: 226 RGTVAYV---PQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDV 279
R V V P+ ++ TV +++ FG P K +D +
Sbjct: 76 RKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRA-------------L 121
Query: 280 TEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
EIG +SGGQ Q V++A + + IFD+ S LD G V +R +
Sbjct: 122 AEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKK 181
Query: 334 GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
GKT V +T+ L L DRII++ G + EG E++
Sbjct: 182 LHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
|
Length = 274 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 63/244 (25%), Positives = 117/244 (47%), Gaps = 33/244 (13%)
Query: 787 IKFEDVVLRY----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLFRIVE 839
IK ++V +Y L ++ + + + I+GR G+GKS++ +N L E
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 840 LERGRILIDGFDIAKFG-LMDLRKILGIIPQSP------VLFSGTVRF---NLDPFSEHS 889
G++ +DG D + L D+R G++ Q+P + V F NL E
Sbjct: 65 ---GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEI 121
Query: 890 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
+ E+L++ + + RR++ L S GQ+Q ++++ L R + ++ DE
Sbjct: 122 RERVDESLKKVGMYE-YRRHAPHL----------LSGGQKQRVAIAGILAMRPECIIFDE 170
Query: 950 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1007
TA +D + TI+E K T+++I H + ++ DRI+++DSG+V+ TP+E
Sbjct: 171 PTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230
Query: 1008 LLSN 1011
+
Sbjct: 231 IFKE 234
|
Length = 280 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 31/228 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+F +V Y P LH +S I + + + G +GAGK+++L L+ + RG++
Sbjct: 2 IEFHNVSKAY-PGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 847 IDGFDIAKF---GLMDLRKILGIIPQ-----------SPVLFSGTVRFNLDPFSEHSDAD 892
I G D+ + L LR+ +G++ Q V VR + +
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
+ H DA E S G++Q ++++RA++ +L+ DE T
Sbjct: 121 ALRQVGLEHKADAF--------------PEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166
Query: 953 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDSGR 998
+D I ++ K T +I+A +++D R+++LD GR
Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 2e-13
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELERGRILIDGFDIAKFGLMD 859
L ++ I + ++G +G GKS+ L R I +++ G + I+G D+ ++
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKID-GLVEIEGKDVKNQDVVA 76
Query: 860 LRKILGIIPQSPVLFSGTVRFNLD---------PFSEHSDADLWEALERAHL----KDAI 906
LRK +G++ Q P +F ++ N+ + +A + + L++ L KD +
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL 136
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
++N+L L S GQ+Q L ++RAL + K+L+LDE T+A+D + +I++ +
Sbjct: 137 KQNALAL-----------SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 967 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+E + +M+++ H + D G ++E+ +E N
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 35/94 (37%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLV 344
++SGGQ+QRV++ARA+ +V +FD+P SALD + +V + +L+ G+T V+V
Sbjct: 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK--VMQDLAEEGRTMVVV 208
Query: 345 TNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
T+++ F V +I +H+G ++EEG E + N
Sbjct: 209 THEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242
|
Length = 256 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDIAK--FG 856
+ G+ + ++G +G+GKS+ L +L R+ +++ R G+IL G DI +
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 899
+ ++RK +G++ Q P F+ ++ N LD E S A LW+
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD---- 151
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD + +++L L S GQ+Q L ++RA+ + IL++DE +A+D +
Sbjct: 152 -QVKDDLHKSALTL-----------SGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
+++T+ E K+ T++I+ H + D G ++EYD + +N
Sbjct: 200 MQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 60/218 (27%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+LH LS T P G++G G+GKS++L L R G IL+D + + +
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85
Query: 863 ILGIIPQS-PVLFSGTVR--FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 919
+ +PQ P TVR + + H + A +R +++AI + +GL
Sbjct: 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI--SLVGLKPLAHR 143
Query: 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD----VRTDALIQKTIREEFKSCTM 975
++ S G+RQ ++ + + S+ L+LDE T+A+D V AL+ + +E + T+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE--RGLTV 201
Query: 976 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ + H +N CD ++ L G ++ TP EL+ E
Sbjct: 202 IAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 23/211 (10%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVP----QVSW 237
++LDI G ++G +G GKT+L+ ++ + ++ G + +P V+
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLR-LIAGFETPTSGEILLDGKDITNLPPHKRPVNT 76
Query: 238 IF-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-I 289
+F + TV +NI FG + KA + LDL+ + R + +
Sbjct: 77 VFQNYALFPHLTVFENIAFG--LRLKKLPKAEIKERVAEALDLV---QLEGYANRKPSQL 131
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR--QVFDRCIRGELSGKTRVLVT-N 346
SGGQ+QRV++ARA+ + V + D+PL ALD + + Q+ + ++ EL G T V VT +
Sbjct: 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHD 190
Query: 347 QLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
Q L+ DRI ++++G +++ GT E++
Sbjct: 191 QEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-13
Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 16/220 (7%)
Query: 783 SSGSIKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
S S K + EL P +L +S ++P ++G TG+GKS++L +L E+
Sbjct: 653 SERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI 712
Query: 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA 900
GR+ + + + +PQ + + TVR N+ F E A L +A+ +
Sbjct: 713 SEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVS 759
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
L+ + + GL+ ++ E G N S GQ+ +SL+RA+ + +LD+ +A+D
Sbjct: 760 QLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819
Query: 961 LI-QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999
+ ++ T ++ H+++ + D ++ L GRV
Sbjct: 820 RVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859
|
Length = 1560 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 47/212 (22%), Positives = 92/212 (43%), Gaps = 35/212 (16%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 232
R L +++ IP G V + G +G GK++L+ + GE P + + R +
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI 74
Query: 233 P----QVSWIF-------NATVRDNILFG---SAFEPARYEK----AIDVTSLQHDLDLL 274
P Q+ +F + TV +N+ P + +D+ L+H L
Sbjct: 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL 134
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334
P +SGG++QRV++ARA+ + V + D+P LD + ++
Sbjct: 135 P-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183
Query: 335 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGMV 365
G T ++ T+ L ++++ R++ + +G +
Sbjct: 184 NRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
I DV + +R L SFT+P +VG G+GKS++ L V L
Sbjct: 3 QQAGIVVNDVTVTWR-NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS 61
Query: 843 GRILIDGFDIAKFGLMDLRK-ILGIIPQS-------PVLFSGTV---RFN----LDPFSE 887
G+I I G + L+K ++ +PQS PVL V R+ L +
Sbjct: 62 GKISILGQPTRQ----ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKK 117
Query: 888 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947
+ AL R + + R Q+ E S GQ++ + L+RA+ ++ ++++L
Sbjct: 118 RDRQIVTAALARVDMVEFRHR-------QIGE----LSGGQKKRVFLARAIAQQGQVILL 166
Query: 948 DEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000
DE VDV+T+A I +RE + TML+ H L ++ + CD +++ G VL
Sbjct: 167 DEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220
|
Length = 272 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 54/227 (23%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
SI+ + Y + L +SF VG +G GAGKS+ + + + + G +
Sbjct: 2 SIRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 846 LIDGFDIAKFGLMDLRKILGIIPQ-SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD 904
+ G D+ + ++++ +G +P+ +P+ VR L F A ++ ++ LK
Sbjct: 60 QVCGEDVLQ-NPKEVQRNIGYLPEHNPLYLDMYVREYLQ-FI----AGIY-GMKGQLLKQ 112
Query: 905 AIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
+ +GL + + S G RQ + L++AL+ K+L+LDE T +D I
Sbjct: 113 RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172
Query: 963 QKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEEL 1008
+ I+ K T+++ H + + CDR+++++ G+++ +EL
Sbjct: 173 RNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 4e-13
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 73/303 (24%)
Query: 163 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
I ++N ++ K E L N++++I G +AI+G TG GKT+ I + L P D
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--D 60
Query: 221 ASAV--------------------------------------IRGTVAYVPQVS--WIFN 240
+ IR V V Q + +F
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 241 ATVRDNILFGS---------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291
T+ +I+FG A + A K I++ L D L +SG
Sbjct: 121 QTIEKDIIFGPVSMGVSKEEAKKRAA--KYIELVGL--DESYLQ--------RSPFELSG 168
Query: 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQL- 348
GQK+RV++A + D +FD+P + LD +++ + I L GKT +LVT+ L
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE--IFDNLNKQGKTIILVTHDLD 226
Query: 349 HFLSQVDRIILVHEG-MVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE-KEDGETVDN 406
+ L R I +G ++K+ T++ LS+N L + ME K+ +V + ++ G V
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP-KLLNFVNKLEKKGIDVPK 285
Query: 407 KTS 409
TS
Sbjct: 286 VTS 288
|
Length = 305 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRND- 59
+ + + +++KL ++ + K + E L+ + VK + E + D
Sbjct: 154 LILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDA 213
Query: 60 ELSWFRKAQFLAACNSFILNSIP-VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 118
E + +KA + FG + ++ G L+ F LSL L P
Sbjct: 214 EKAGIKKAITAGLSFGITQLISYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGP 273
Query: 119 L 119
L
Sbjct: 274 L 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 35/211 (16%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYV 232
L +++L I G + + G +G GKT+L+ + G L P V R +
Sbjct: 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL 74
Query: 233 P----QVSWIF-------NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLL 274
P ++ +F + TV +N+ R A+ L+H D
Sbjct: 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF 134
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334
P +SGG++QRV++ARA+ ++ + + D+P LD + ++ D R
Sbjct: 135 PE-----------QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183
Query: 335 ELSGKTRVLVTNQLHFLSQVD-RIILVHEGM 364
G T ++ T+ L + +V R+I++ +G
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 5e-13
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 819 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF---- 874
++G +G GK+++L L + + G I++DG D+ LR I ++ QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHI-NMVFQSYALFPHMT 58
Query: 875 -SGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929
V F L P +E + EAL L++ R L S GQ+
Sbjct: 59 VEENVAFGLKMRKVPRAE-IKPRVLEALRLVQLEEFADRKPHQL-----------SGGQQ 106
Query: 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTII 986
Q ++L+RAL+ + KIL+LDE +A+D + +Q KTI+E+ + + + +
Sbjct: 107 QRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMT 166
Query: 987 DCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
DRI ++ G++ + TPEE+ + F
Sbjct: 167 MSDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 64/242 (26%)
Query: 163 ISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG----- 213
+++RN ++ SK +INLDI G V VG +G GK++L+ + G
Sbjct: 4 VTLRNVTKAYGDVVISK-------DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT 56
Query: 214 ------------ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA----- 256
++PP ++ + A P +S V +N+ FG A
Sbjct: 57 SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS------VAENMSFGLKLAGAKKEEI 110
Query: 257 --RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314
R + +V L H LD P +SGGQ+QRV++ R + + VF+ D+
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDE 159
Query: 315 PLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKE 367
PLS LDA + Q +R E+S G+T + VT +Q+ ++ D+I+++ G V +
Sbjct: 160 PLSNLDAALRVQ-----MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 368 EG 369
G
Sbjct: 215 VG 216
|
Length = 369 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 66/244 (27%), Positives = 117/244 (47%), Gaps = 26/244 (10%)
Query: 787 IKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839
++ DV YR PVL +S +I + VG++GR+G GKS++ L + +
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 840 LERGRILIDGFDIAKF---GLMDLRKILGIIPQ---SPVLFSGTVRFNL-DPFSEHSDAD 892
+G + G D+ + R+ + ++ Q S V TVR + +P + D
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLD 122
Query: 893 LWEALER-AHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEA 950
E R A L D + GL ++ ++ S GQ Q ++++RAL + K++VLDEA
Sbjct: 123 ESEQKARIAELLDMV-----GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 951 TAAVDVRTDALI---QKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006
+ +D+ A+I + +++ F L I H L + C R+ ++D G+++E
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236
Query: 1007 ELLS 1010
+LLS
Sbjct: 237 QLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-13
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 54/257 (21%)
Query: 156 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---ML 212
T +PAI +R+ + K L +INLDIP + A++G +G GK++L+ M
Sbjct: 1 ETMKIPAIEVRDLNLYYGDKH---ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 213 GELPPVSDASAV----------------IRGTVAYVPQVSWIFNATVRDNILFG------ 250
+P V +R V V Q F ++ DN+ +G
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 251 -SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305
E ++ +L + L + + +SGGQ+QR+ +ARA+
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLH-----------KSALGLSGGQQQRLCIARALAV 166
Query: 306 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQV----DRIILV 360
+V + D+P SALD + + I EL K T V+VT H + Q D
Sbjct: 167 KPEVLLMDEPTSALDP-ISTLKIEELIT-ELKKKYTIVIVT---HNMQQAARVSDYTAFF 221
Query: 361 HEGMVKEEGTFEDLSNN 377
+ G + E G + + N
Sbjct: 222 YLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 38/228 (16%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----------PPVSDAS 222
S A R L ++LD+ G ++AI+G G GK++L+ A+ GEL P++
Sbjct: 10 SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWP 69
Query: 223 AVIRGTV-AYVPQVSWI-FNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLLP 275
A +PQ S + F TV++ + G S EP E+ DL L
Sbjct: 70 PEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 276 GGDVTEIGERGVNISGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFD 329
G D +SGG++QRV +AR + D+P SALD
Sbjct: 130 GRDYRT-------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTL- 181
Query: 330 RCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 373
R R VL LH L+ DRI+L+H+G V G+ +D
Sbjct: 182 RLARQLAREGGAVLAV--LHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 7e-13
Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 33/206 (16%)
Query: 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----IRGTVAYVPQVSWIFN 240
+L++ G +VAI+G +G GK++L++ + G + P S + V G Y VS +F
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 241 A-------TVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286
TVR NI G +A + + A + LD LP
Sbjct: 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE---------- 127
Query: 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK--TRVLV 344
+SGGQ+QRV++AR + + + + D+P SALD + R+ ++ S + T ++V
Sbjct: 128 -QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLL-REEMLALVKQLCSERQRTLLMV 185
Query: 345 TNQLHFLSQV-DRIILVHEGMVKEEG 369
T+ L + +I +V +G +K
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 7e-13
Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 15/198 (7%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+ LSFT+ + + I G GAGK+++L L ++ + G + G I +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQV 917
+L + Q + T NL + + A +WEAL + L D V
Sbjct: 76 ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-------EDLPV 128
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 977
S GQ++ ++L+R L + + +LDE A+D AL+ + +++
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVL 184
Query: 978 IAHRLNTIIDCDRILLLD 995
+ I +I LD
Sbjct: 185 LTTHQPLPIASAQIRRLD 202
|
Length = 209 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 8e-13
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 31/228 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 856
L ++ I + +G +G GKS++L T R+ EL G IL+DG +I K
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 857 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWE----ALERAHL----KD 904
+ LR +G++ Q P F + + F + F + S A++ E AL +A L KD
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ ++ L S GQ+Q L ++R + R ++L+LDE +A+D + I++
Sbjct: 149 KLHQSGYSL-----------SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE 197
Query: 965 TIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
I E + T++I+ H + C D + G ++E+ + + +
Sbjct: 198 LITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 9e-13
Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 856
++ +S I ++G +G GKS+ L ++ R+ +L G IL +G +I +
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 899
+++LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---- 152
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD + ++L L S GQ+Q L ++R L + +L+LDE +A+D ++
Sbjct: 153 -EVKDRLHSSALSL-----------SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
A I++ I E + +++I+ H + + DR +G ++EYD E++ ++
Sbjct: 201 AKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 39/208 (18%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVA 230
+++L + G ++AI+G +G GKT+L+ A+ G + S I + VA
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 231 YVPQVS-WIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
YV Q + TVR+ + + + K L DL L G G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG-----GN 139
Query: 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----VGRQVFDRCIRGELSGKT 340
ISGG+++RVS+A + + V I D+P S LD+ + + R +
Sbjct: 140 LVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI---- 195
Query: 341 RVLVTNQLH-----FLSQVDRIILVHEG 363
V++T +H DRI+L+ G
Sbjct: 196 -VILT--IHQPRSDLFRLFDRILLLSSG 220
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 30/210 (14%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAV 224
++ L +I+L + G + +G G GKT+ + +LG + P S + A+
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 225 IR-GTVAYVPQVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVT 280
R G + P + N T R+N+ + R ++ +DV L+ G
Sbjct: 72 RRIGALIEAP--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKG--- 126
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340
S G KQR+ +A A+ N D+ I D+P + LD +++ + + G T
Sbjct: 127 --------FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 341 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 369
++ ++ L + +V DRI ++++G + EEG
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 35/223 (15%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAML----GEL----PPVSDASAV--- 224
L NI+L+I G +V I+G +G GK++L I+ + G+L V+D
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 225 IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
IR V Q ++F + T +N++FG P R A + + +LL ++G
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFG----PLRVRGASKEEAEKQARELL-----AKVG 125
Query: 284 --ERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337
ER +SGGQ+QRV++ARA+ + +FD+P SALD + +V + ++ +L+
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL-KVMQ-DLA 183
Query: 338 --GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
G T V+VT+++ F +V R+I + +G + E+G + L N
Sbjct: 184 EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 33/210 (15%)
Query: 172 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAY 231
++ L ++NL I G + AI+G +G GK++L++ ++G L + G
Sbjct: 5 SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETP 63
Query: 232 VP-----------QVSWIF-------NATVRDNILFGSAFEP---ARYEKAIDVTSLQHD 270
++ ++F N TV +N+ G ++ + +
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123
Query: 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
L+L + E+ SGG++QRV++ARA+ + + D+P +LD +V D
Sbjct: 124 LNLKLKQKIYEL-------SGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD- 175
Query: 331 CIRGEL--SGKTRVLVTNQLHFLSQVDRII 358
+ EL GKT ++VT+ Q DR+I
Sbjct: 176 -LLLELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 48/237 (20%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-----LID--------- 848
VLHG+ + P + V I+G +G+GK+++L + + + E G I ID
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 849 ----------GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE 898
GF F L R +L I + PV+ G + + A
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK------------EEATARA 125
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
R L +GL + + S GQ+Q ++++RAL R ++++ DE T+A+D
Sbjct: 126 RELLA------KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPEL 179
Query: 959 DALIQKTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+ TIR +E + TM+I+ H ++ D DR + +D GR++E + L ++
Sbjct: 180 VGEVLNTIRQLAQEKR--TMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234
|
Length = 250 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 53/214 (24%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
++ RNG+ + L + + +P GS+ A+VG G GK++L A++G + S
Sbjct: 14 VTWRNGHTA---------LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64
Query: 223 AVI---------RGTVAYVPQ---VSWIFNATVRDNILFG-----------SAFEPARYE 259
+++ + VAYVPQ V W F V D ++ G +
Sbjct: 65 SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVT 124
Query: 260 KA---IDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316
A +D+ +H +IGE +SGGQK+RV +ARA+ V + D+P
Sbjct: 125 AALARVDMVEFRH----------RQIGE----LSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 317 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 348
+ +D ++ R +R E GKT ++ T+ L
Sbjct: 171 TGVDVKTEARIISLLRELRDE--GKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 41/218 (18%)
Query: 819 IVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI-AKF-GLMDLRKILGIIPQSP 871
I+G +G GKS+ L + R+ +L G ++ DG DI KF + LRK +G++ Q P
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 872 VLFSGTVRFN---------------LDPFSEHS--DADLWEALERAHLKDAIRRNSLGLD 914
F ++ N L+ E S A LW+ + D + +N+LGL
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-----EVSDRLDKNALGL- 183
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 974
S GQ+Q L ++R L +IL+LDE T+A+D + A I+ I+E S T
Sbjct: 184 ----------SGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYT 233
Query: 975 MLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
++I+ H + D + G ++E+ +L +N
Sbjct: 234 IMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/228 (24%), Positives = 106/228 (46%), Gaps = 40/228 (17%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------- 224
+ L +++L I G VA++G +G GK++L+ + G + P S + +
Sbjct: 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL 73
Query: 225 --IRGTVAYVPQ-VSWIFNATVRDNILFGSA------------FEPARYEKAIDVTSLQH 269
+R + + Q + I +V +N+L G F ++A+
Sbjct: 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL------A 127
Query: 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
L+ + G + + +R +SGGQ+QRV++ARA+ + + D+P+++LD RQV D
Sbjct: 128 ALERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 330 --RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDL 374
+ I E G T ++ +Q+ DRI+ + +G + +G +L
Sbjct: 186 LLKRINREE-GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 242
++ I G + +VG +G GK++L +LG P S G + +F
Sbjct: 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS-------GEI--------LFEG- 74
Query: 243 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMAR 301
+D R + ++ L E R + +SGGQ+QR+ +AR
Sbjct: 75 -KDITKLSKEERRERVLELLEKVGLP-----------EEFLYRYPHELSGGQRQRIGIAR 122
Query: 302 AVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRII 358
A+ N + + D+P+SALD V Q+ + + ++ EL G T + +++ L + + DRI
Sbjct: 123 ALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIA 181
Query: 359 LVHEGMVKEEGTFEDLSNN 377
+++ G + E G E++ +N
Sbjct: 182 VMYLGKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 41/215 (19%)
Query: 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-----TVAYVPQVSWIF 239
+L +P G +VAI+G +G GK++L++ + G P S +I G + VS +F
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS-GEILINGVDHTASPPAERPVSMLF 77
Query: 240 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
+ TV NI G +A + + E A L L LPG
Sbjct: 78 QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG--------- 128
Query: 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ-----VFDRCIRGELSGKT 340
+SGGQ+QRV++AR + + + D+P SALD + R V C T
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPAL-RAEMLALVSQLCDE---RKMT 182
Query: 341 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
++VT+ +++ DR++ + G + +G+ ++L
Sbjct: 183 LLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 222
+ L ++L + GSLV +VG G GKT+L+ A+ G L P V S
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 223 AVIRG-TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKA--IDVTSLQHDLDLLPGGD 278
A VA VPQ S F VR + G +R++ D +++ ++
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME---RTG 128
Query: 279 VTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337
V + +R V ++SGG++QRV +ARA+ + V + D+P ++LD + + + R
Sbjct: 129 VAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 338 GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374
GKT V + L ++ D ++L+ +G V+ G D+
Sbjct: 189 GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 65/268 (24%), Positives = 116/268 (43%), Gaps = 36/268 (13%)
Query: 745 ASLAENSLNAVERVGNYIEL--PSEAPLVIESNRPPPGWPSSGS-IKFEDVVLRYRPELP 801
A A++ + +E++ + P E + PPPG ++FE+V Y
Sbjct: 277 AKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGY-DGGR 335
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+L LSF I D++ IVG GAGKS++L L + G + K G
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV--------KVGE---T 384
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDA--DLWEALERAHLKDAIRRNSLGLDA-QVS 918
+G Q + + E S+ D E RA+L G
Sbjct: 385 VKIGYFDQH----RDELDPDKTVLEELSEGFPDGDEQEVRAYLGR------FGFTGEDQE 434
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978
+ S G++ L L++ LL+ +L+LDE T +D+ + +++ + +F+ T+L++
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEG-TVLLV 492
Query: 979 AH-R--LNTIIDCDRILLLDSGRVLEYD 1003
+H R L+ + RI L++ +V E++
Sbjct: 493 SHDRYFLDRV--ATRIWLVE-DKVEEFE 517
|
Length = 530 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 45/225 (20%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 226
+++LD+ G + I+G +G GK++L+ + + P S + + R
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRR 101
Query: 227 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 278
++ V Q + + TV +N+ FG A R +A+++ L+ P
Sbjct: 102 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-- 159
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GEL 336
+SGG +QRV +ARA+ + D+ + D+ SALD + R++ D +R EL
Sbjct: 160 ---------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAEL 210
Query: 337 SGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 377
KT V +T H L + DRI ++ +G + + GT E++ N
Sbjct: 211 -QKTIVFIT---HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG- 849
D+ RY+ E PVL GL+ S G+VG G GKS++ L ++ ++G +L G
Sbjct: 6 DLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGK 63
Query: 850 -FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDA--I 906
D +K GL+ LR+ + + Q P F D+D+ +L + +A
Sbjct: 64 PLDYSKRGLLALRQQVATVFQDP---------EQQIFYTDIDSDIAFSLRNLGVPEAEIT 114
Query: 907 RR--NSLGL-DAQ--VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
RR +L L DAQ + + S GQ++ ++++ AL+ +++ L+LDE TA +D
Sbjct: 115 RRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 962 IQKTIREEFKSCTMLII-AHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
+ IR +II +H ++ I + D + +L G++L + P E+ +
Sbjct: 175 MIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224
E + ++N + G AIVG TG GK++LI + L P + V
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 225 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID-VTSLQHDLDLLPGG 277
+R + V Q S +F TV I+FG P ++ +D V + H L + G
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFG----PKNFKMNLDEVKNYAHRLLMDLGF 134
Query: 278 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL- 336
+ + +SGGQ +++++ + N D+ + D+P + LD RQV +
Sbjct: 135 SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD 194
Query: 337 SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379
KT +LV++ ++ +++ D +I++ EG + + + ++L + +
Sbjct: 195 ENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 794 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFD 851
L +L G++ TI + ++G G+GKS++ T+ E+ G IL G D
Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65
Query: 852 IAKFGLMDLRKILGII--PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909
I + R LGI Q P G V+ D +R
Sbjct: 66 ITDL-PPEERARLGIFLAFQYPPEIPG-VK----------------------NADFLR-- 99
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969
E FS G+++ + + LL + +LDE + +D+ L+ + I +
Sbjct: 100 ---------YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI-NK 149
Query: 970 FKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLE 1001
+ ++LII H RL I DR+ +L GR+++
Sbjct: 150 LREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 39/182 (21%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236
R ++ + G + + G G GKT+L+ + G LPP + GT+
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA-------GTIKLDGGDI 66
Query: 237 WIF------------NA-----TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPG 276
NA TV +N+ F +AF E A++ L L P
Sbjct: 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHL-PF 125
Query: 277 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 336
G +S GQK+RV++AR + SN ++I D+P +ALDA +F IR L
Sbjct: 126 G----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA-AVALFAELIRAHL 174
Query: 337 SG 338
+
Sbjct: 175 AQ 176
|
Length = 207 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 3e-12
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 860
L ++ IP IVG+ G GKSS+L + ++ G++ + ++
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 861 ---RKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
R + Q P L + TV N+ PF++ + +A L+ I G
Sbjct: 75 SRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDA---CSLQPDIDLLPFGDQ 131
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQKTIREEFK-- 971
++ E G N S GQRQ + ++RAL + + I+ LD+ +A+D+ +D L+Q+ I + +
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 972 SCTMLIIAHRLNTIIDCDRILLLDSG 997
T++++ H+L + D I+ + G
Sbjct: 192 KRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 47/229 (20%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 229
+++ + G + ++G G GKT+L + + G L P S + R +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 230 AYVPQVSWIF-NATVRDNILFG--------------SAFEPARYEKA---IDVTSLQHDL 271
Q+ +F TV +N++ E E+A ++ L
Sbjct: 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLA 137
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
D G +S GQ++R+ +ARA+ ++ + + D+P + L +
Sbjct: 138 DRPAG-----------ELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAEL 185
Query: 332 IRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
IR EL G T +LV + + + + DR+ ++ +G V EGT +++ NN
Sbjct: 186 IR-ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-12
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 26/129 (20%)
Query: 205 TSLISAMLGELPPVS-------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFG 250
++L+ + G L P S + ++R + V Q +F TVR+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 251 SAFEP--ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308
+ AR E+A++ L LD P G +SGGQKQRV++ARA+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 309 VFIFDDPLS 317
+ + D+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 3e-12
Identities = 41/193 (21%), Positives = 74/193 (38%), Gaps = 60/193 (31%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 242
++L + G + A++G G GK++L+ + G P S G +
Sbjct: 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS-------GEI------------- 57
Query: 243 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVS 298
++ G A A G+ + S G++Q V
Sbjct: 58 ----LVDGKEVSFASPRDARR---------------------AGIAMVYQLSVGERQMVE 92
Query: 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-- 354
+ARA+ N+ + I D+P +AL ++F IR L G + ++ H L +V
Sbjct: 93 IARALARNARLLILDEPTAALTPAEVERLFKV-IR-RLRAQGVAVIFIS---HRLDEVFE 147
Query: 355 --DRIILVHEGMV 365
DR+ ++ +G V
Sbjct: 148 IADRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 16/181 (8%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+ GLSFT+ + + + G G+GK+++L + ++ G I +DG DI + +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGLDAQVS 918
LG ++ + + TV NL+ W A E + A+ ++GL
Sbjct: 76 HYLG--HRNAMKPALTVAENLE---------FWAAFLGGEELDIAAAL--EAVGLAPLAH 122
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978
S GQ++ ++L+R L+ I +LDE TAA+D AL + IR ++I
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182
Query: 979 A 979
A
Sbjct: 183 A 183
|
Length = 207 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
L G+SFTI + VG +G GAGK++ L L +++ G + + G K LR
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 862 KILGIIPQS-------PVLFSGTVR---FNLDPFSEHSDAD-LWEALERAHLKDAIRRNS 910
+I + Q PV+ S + ++L P D L E L+ L
Sbjct: 95 RIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------- 146
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 970
LD V S+GQR ++ ALL +IL LDE T +DV I+ ++E
Sbjct: 147 --LDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 971 K--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003
+ T+L+ +H + I R+L++D GR+L YD
Sbjct: 201 RERGTTVLLTSHYMKDIEALARRVLVIDKGRLL-YD 235
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 29/157 (18%)
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVI----- 225
L +NL +P + AI G +G GKTSLI+A+ G P + DA I
Sbjct: 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE 74
Query: 226 RGTVAYVPQVSWIF-NATVRDNILFG-SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+ + YV Q + +F + VR N+ +G + A+++K + + ++ LD PG
Sbjct: 75 KRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG------- 127
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
++SGG+KQRV++ RA+ + ++ + D+PL++LD
Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-12
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+K D+ Y LP + T+ ++V I+G +GAGKS++LN + + G +
Sbjct: 2 LKLTDITWLYH-HLP--MR-FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLT 57
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFN----LDPFSEHSDADLWEALERAH 901
++G D R+ + ++ Q LFS TV N L+P + + A +R
Sbjct: 58 LNGQDHTT--TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAA------QREK 109
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD 959
L R+ +G++ ++ S GQRQ ++L+R L+R IL+LDE +A+D +R +
Sbjct: 110 LHAIARQ--MGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
Query: 960 --ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI----LLLDSGRVLEYDTP-EELLSNE 1012
L+ + +E + T+L+++H L D RI L++ GR+ +D P +ELLS +
Sbjct: 168 MLTLVSQVCQE--RQLTLLMVSHSLE---DAARIAPRSLVVADGRIA-WDGPTDELLSGK 221
Query: 1013 GS 1014
S
Sbjct: 222 AS 223
|
Length = 232 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 18/219 (8%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ + + Y E P +H T + IVG +G+GKS++LN + + GR+L
Sbjct: 1 VRLDKIRFSYG-EQP--MH-FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 905
I+G D+ D + + ++ Q LF+ TV N+ S A +R ++ A
Sbjct: 57 INGVDVTAAPPAD--RPVSMLFQENNLFAHLTVEQNVG--LGLSPGLKLTAEDRQAIEVA 112
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTD--AL 961
+ R +GL S G+RQ ++L+R L+R +L+LDE AA+D +R + L
Sbjct: 113 LAR--VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRV 999
+ E T+L++ H+ R++ LD+GR+
Sbjct: 171 VLDLHAE--TKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E+V Y + L G+S I + ++G +G GK+++L + G IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAH 901
+DG DI L ++ + + Q+ LF + F L L +A +
Sbjct: 59 LDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGL------RLKKLPKAEIKER 110
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
+ +A+ + L+ + S GQ+Q ++++RAL+ K+L+LDE A+D++
Sbjct: 111 VAEALDL--VQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK---- 164
Query: 962 IQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1014
++K ++ E K T + + H + + DRI +++ G++ + TPEE+ +
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPAN 224
Query: 1015 SF 1016
F
Sbjct: 225 RF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 4e-12
Identities = 66/253 (26%), Positives = 117/253 (46%), Gaps = 42/253 (16%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
+IK +D+ Y + G+S I + I+G +G GKS+ + TL RI ELE G +
Sbjct: 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 846 LIDGFDIAKFG---------LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDAD 892
++G + FG + LR+ +G++ Q P F + V + + ++ AD
Sbjct: 64 KVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQAD 122
Query: 893 LWEALERA--------HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944
L E +E A +KD + +++LGL S GQ+Q L ++RAL + K+
Sbjct: 123 LDEIVESALKGAALWQEVKDKLNKSALGL-----------SGGQQQRLCIARALAIKPKV 171
Query: 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRV-- 999
L++DE +A+D +++ I T+ I+ H + + D D R+
Sbjct: 172 LLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQ 231
Query: 1000 -LEYDTPEELLSN 1011
+E+ ++ SN
Sbjct: 232 MVEFGVTTQIFSN 244
|
Length = 259 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 32/201 (15%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------R 226
R L +++L I G LV ++G +G GKT+L++ + G + P S S + R
Sbjct: 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-SRGSIQLNGRRIEGPGAER 76
Query: 227 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
G V A +P W+ V DN+ FG EKA L L+
Sbjct: 77 GVVFQNEALLP---WL---NVIDNVAFGLQL--RGIEKAQRREIAHQMLALVGLEGAEH- 127
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTR 341
+ +SGG +QRV +ARA+ + + D+P ALDA Q+ + + + +GK
Sbjct: 128 -KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQV 186
Query: 342 VLVTNQLH---FLSQVDRIIL 359
+L+T+ + FL+ R+++
Sbjct: 187 LLITHDIEEALFLA--TRLVV 205
|
Length = 259 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 861
LH +S I + V ++G GAGK+++L TL GRI+ DG DI + +R
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSE 919
+ + I+P+ +FS TV NL ++ D + E ++ + + R + ++
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVY--ELFPRL---HERRIQR 134
Query: 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI---REEFKSCTML 976
AG S G++Q+L++ RAL+ + ++L+LDE + + I TI RE+ T+
Sbjct: 135 AG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIF 191
Query: 977 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
++ N + DR +L++G V+ DT + LL+NE
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLANE 228
|
Length = 237 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 4e-12
Identities = 56/213 (26%), Positives = 105/213 (49%), Gaps = 32/213 (15%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IR 226
RP + +N+ + A +G G GKT+ +S + G LPP S V +R
Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002
Query: 227 GTVAYVPQVSWIFN-ATVRDNILF-----GSAFEPAR--YEKAIDVTSLQHDLDLLPGGD 278
++ PQ + +F+ TV ++ILF G ++E A+ E ++ T L H +
Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN------ 1056
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
E ++SGG ++++S+A A ++ V + D+P S +D + R ++D ++ SG
Sbjct: 1057 -----EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SG 1110
Query: 339 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 370
+T ++ T+ + + DRI ++ +G + GT
Sbjct: 1111 RTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-12
Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 856
L+ +S P++ ++G +G+GKS++L ++ R+ +L G I+ +G +I +
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 857 LMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERA--------HLKD 904
+DLRK +G++ Q P F + V + L L EA+E++ +KD
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ ++LGL S GQ+Q + ++R L KI++LDE T+A+D + I++
Sbjct: 141 RLHDSALGL-----------SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 965 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
T+ TML++ + DR G ++EY+ +++ N
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 5e-12
Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 32/244 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---- 842
IK E++ L Y + L +S IP + ++G +G GKS+ + L R+ +L +
Sbjct: 13 IKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70
Query: 843 -GRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER 899
G++ I+G DI + + ++LRK +G++ Q P F P S + + +
Sbjct: 71 EGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF---------PMSIYDNVAYGPRIHG 121
Query: 900 AHLKD--AIRRNSLGLDAQVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEA 950
A+ KD + N+L A E + + S GQ+Q L ++R L + KI++ DE
Sbjct: 122 ANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 951 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEE 1007
T+A+D + A I+ I K T++I+ H + I D L+ G ++E+ +
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM--GELIEFGQTRQ 239
Query: 1008 LLSN 1011
+ N
Sbjct: 240 IFHN 243
|
Length = 258 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 31/160 (19%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-----------V 229
L N++L++ G I+G TG GK+ L+ + G + P S ++ G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS-GKILLNGKDITNLPPEKRDI 73
Query: 230 AYVPQVSWIF-NATVRDNILFG----SAFEPARYEKAIDVTSL---QHDLDLLPGGDVTE 281
+YVPQ +F + TV NI +G + K +++ + H L+ P
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE----- 128
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+SGG++QRV++ARA+ N + + D+P SALD
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DASA 223
L IN+ I G V +VG +G GK++L+ + E P S A
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 224 VIRGTVAYVPQVS-WIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 273
+R + V Q + + V +N+ F A E R A+++ L H
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAF--ALEVTGVPPREIRKRVPAALELVGLSHKHRA 132
Query: 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
LP +SGG++QRV++ARA+ ++ + I D+P LD ++ + +
Sbjct: 133 LPAE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 334 GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMV 365
+G T V+ T H VD R+I + G +
Sbjct: 182 INKAGTTVVVAT---HAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 7e-12
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 26/196 (13%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 855
V+ G+ IP + ++G +G GKS++L T R++EL G + + G +I
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 856 GLMDLRKILGIIPQSPVLFSGT---------VRFN--LDPFSEHSDADLWEALERAHLKD 904
+++R+ +G++ Q P F V+ N + E + W AL++A L D
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW-ALKKAALWD 137
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
++ ++++ N S GQRQ L ++RAL + KIL++DE TA +D A I++
Sbjct: 138 EVKD-------RLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEE 190
Query: 965 TIREEFKSCTMLIIAH 980
+ E K T++++ H
Sbjct: 191 LLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-12
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 50/220 (22%)
Query: 791 DVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849
+ VL R + + +SF + + VGI G G G++ + LF + G I +DG
Sbjct: 2 EPVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG 61
Query: 850 FDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 907
+ + D + GI +P+ +R +
Sbjct: 62 KPVTRRSPRDAIR-AGIAYVPE----------------------------DR-------K 85
Query: 908 RNSLGLDAQVSEAGENFSVGQR------QLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
R L LD V EN ++ Q + L+R L R ++L+LDE T VDV A
Sbjct: 86 REGLVLDLSV---AENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAE 142
Query: 962 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 999
I + IRE + +L+I+ L+ ++ CDRIL++ GR+
Sbjct: 143 IYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 7e-12
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 40/233 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF-G 856
VL +S P ++G TG+GK++ L TL R+ + G +L+ G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 857 LMDLRKILGIIPQSPVLF---------SGTVRFNLDPFSEH--------SDADLWEALER 899
+++ R+ +G++ Q P F +G L P E ++ LW+A+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-- 153
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
KD ++S++ S GQ+QLL L+R L ++L+LDE T+A+D T
Sbjct: 154 ---KD-----------RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTT 199
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
I++ IR T++I+ H L DR L GR++E E+L S+
Sbjct: 200 EKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 8e-12
Identities = 56/220 (25%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLI-----------------SAMLGELPPVSDASAVI 225
+ +L I G + I+G +G GK++ + + + PV + V
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV-ELREVR 69
Query: 226 RGTVAYVPQVSWIF-NATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVT 280
R + V Q +F + T+ N G E R EKA L+LL +
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKA---------LELLKLVGLE 120
Query: 281 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-G 338
E R + +SGG +QRV +ARA+ + D+ + D+ SALD + + D + + +
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 339 KTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
KT V +T+ L + DRI+++ G + + GT +++ N
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 28/160 (17%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----------PVSDASAVIR 226
+P L +INL + G L+ ++G +G GKT+L++ + G +P PV A R
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE-R 72
Query: 227 GTV----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
G V +P W V+DN+ FG + A EK + L + +
Sbjct: 73 GVVFQNEGLLP---W---RNVQDNVAFG--LQLAGVEKMQRLEIAHQMLKKV---GLEGA 121
Query: 283 GERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+R + +SGGQ+QRV +ARA+ +N + + D+P ALDA
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 154 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213
P+ P I ++N + + L +++ + G AIVG G GKT+L+S + G
Sbjct: 23 HPIEINEPLIELKNVSVR---RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79
Query: 214 ELPPVSDASAV-------------IRGTVAYV-PQVSWIF--NATVRDNILFGSAFEPAR 257
E PP S + +R + V ++ F TVRD +L G
Sbjct: 80 EHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGI 139
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPL 316
Y++ + L LL + +R ++S G+++RV +ARA+ + ++ I D+P
Sbjct: 140 YQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 317 SALD 320
LD
Sbjct: 200 QGLD 203
|
Length = 257 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 9e-12
Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 856
L ++ I ++ I+G +G GKS+ + TL R+VEL G+IL +I +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 899
+ +LR +G++ Q P F ++ N LD E S A +W+
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD---- 155
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
LKD + N+ GL S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 156 -ELKDRLHDNAYGL-----------SGGQQQRLCIARCLAIEPDVILMDEPTSALDPIST 203
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+++ ++E K +++I+ H + D+ +G V EYD +++ SN
Sbjct: 204 LKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSN 256
|
Length = 271 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 35/210 (16%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 229
L ++L + G + ++G G GKT+L+ + PP S + +R +
Sbjct: 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 230 AYVPQ-VSWIFNATVR---DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
Y+PQ N TVR D I + + +D L+L+ ++ + ++
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEV-----LELV---NLGDRAKK 126
Query: 286 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVL 343
+ +SGG ++RV +A+A+ + + I D+P + LD R F R + EL + +L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRF-RNLLSELGEDRIVIL 184
Query: 344 VTNQLHFLSQV----DRIILVHEGMVKEEG 369
T H + V +++ ++++G + EG
Sbjct: 185 ST---HIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 62/217 (28%), Positives = 107/217 (49%), Gaps = 30/217 (13%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 855
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 856 GLMDLRKILGIIPQSPVLFSG-TVRFNL--DPF------SEHSDADLWEALERAHLKDAI 906
+ DLR+ +G++ Q L+ TV+ NL P + + A + L+R LK
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A I I
Sbjct: 136 DRYPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 967 RE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001
+E T +I+ H + R++ +++G ++E
Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 54/223 (24%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 856
L +S IP + ++G +G GKS+ L + R+ ++ R G + G ++ A
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 910
+ LR+ +G++ Q P F ++ N + + D + E+L RA L D ++
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-- 172
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 970
Q+ +G + S GQ+Q L ++RA+ +++++DE +A+D + I+ I E
Sbjct: 173 -----QLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 971 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSN 1011
+ T++I+ H + I + L G ++E+D +++ N
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 24/218 (11%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMD 859
+L G++ T+ + I+G G+GKS++ T+ E+ G IL G D+ + D
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL-EPD 72
Query: 860 LRKILGII--PQSPVLFSG--TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN--SLGL 913
R G+ Q P G + F + A E L+ ++ LG+
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 914 DAQVSEAGEN--FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL------IQKT 965
D + N FS G+++ + + L K+ +LDE + +D+ DAL I +
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI--DALKIVAEGINR- 189
Query: 966 IREEFKSCTMLIIAH--RLNTIIDCDRILLLDSGRVLE 1001
+RE +S LII H RL I D + +L GR+++
Sbjct: 190 LREPDRSF--LIITHYQRLLNYIKPDYVHVLLDGRIVK 225
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 856
LH +S + ++G +G GKS+ L L R+ +L G IL+DG +I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 857 LMDLRKILGIIPQSPVLFSGTV--------RFN-------LDPFSEHS--DADLWEALER 899
+++LR+ +G++ Q P F ++ R N L E S A LW+
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD---- 137
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD + ++LGL S GQ+Q L ++RAL ++L++DE +A+D
Sbjct: 138 -EVKDRLHESALGL-----------SGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
I++ I E T++I+ H + D G+++E E++ +
Sbjct: 186 QKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 60/232 (25%), Positives = 107/232 (46%), Gaps = 40/232 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI-AKFGL 857
L ++ IP ++G +G GKS++L L R+ +L G ++ +DG DI +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 858 MDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALERA 900
DLR +G++ Q P F ++ N LD E S A LW+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD----- 133
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
+KD ++ ++ GL S GQ+Q L ++R + ++++DE T+A+D
Sbjct: 134 EVKDRLKSHAFGL-----------SGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATH 182
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
I++ + E K+ T++I+ H + DR G ++E+D + + SN
Sbjct: 183 KIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 37/231 (16%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSML------NTLFRIVELERGRILIDGFDI--AKF 855
L+ ++ I + ++G +G GKS+ L N L V++E G +L+DG +I
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE-GEVLLDGKNIYDKDV 78
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDAD--LWEALERAHL----K 903
+++LRK +G++ Q P F ++ N + + + D + AL++A L K
Sbjct: 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK 138
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
D +++++L L S GQ+Q L ++R + + ++++DE T+A+D + I+
Sbjct: 139 DDLKKSALKL-----------SGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 964 KTIREEFKSCTMLIIAHRL---NTIIDCDRILLLDSGRVLEYDTPEELLSN 1011
+ E K T++I+ H + + + D L+ G ++E++ E++
Sbjct: 188 DLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 41/238 (17%)
Query: 787 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
+K E++ RY+ VL G+S +I + V IVG +G+GKS++L+ L + G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 845 ILIDGFDIAKFG---LMDLR-KILGIIPQ---------------SPVLFSGTVRFNLDPF 885
+L +G ++K LR K LG I Q P+L
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSV------ 115
Query: 886 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945
+ + +E LE+ L+ I + + SE S G+RQ ++++RAL+ + ++
Sbjct: 116 -KEAKERAYEMLEKVGLEHRI-------NHRPSE----LSGGERQRVAIARALVNQPSLV 163
Query: 946 VLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
+ DE T +D +I + E + + L++ H L DR+L + G++
Sbjct: 164 LADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 2e-11
Identities = 60/266 (22%), Positives = 125/266 (46%), Gaps = 15/266 (5%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GELP--PVSDASAVI 225
++A R L +++ + G V ++G TG GK++L+SA+L GE+ VS S +
Sbjct: 1228 TEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTL 1287
Query: 226 ---RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
R +PQ +IF+ T R N+ + K + L+ ++ P +
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 342
+ G +S G KQ + +AR++ S + + + D+P + LD V Q+ + ++ S T +
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDP-VTLQIIRKTLKQSFSNCTVI 1406
Query: 343 LVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGE 402
L +++ L + + +++ VK+ + + L N LF++ M A +++ + + +
Sbjct: 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRLKLFPLHRRNSS 1466
Query: 403 TVDNKTSKPAANGVDNDLPKEASDTR 428
+ +P + + +E +TR
Sbjct: 1467 ---KRKPQPKITALREEAEEEVQNTR 1489
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-11
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 63/234 (26%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------------VSDASAVIR 226
++L + G + A++G G GK++L+ + G PP DA A
Sbjct: 26 GVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA--A 83
Query: 227 GTVAYVPQ-VSWIFNATVRDNILFGSAFEP-------------ARYEKAIDVTSLQHDLD 272
G +A V Q +S + N +V +NI G EP R + + L D D
Sbjct: 84 G-IATVHQELSLVPNLSVAENIFLGR--EPTRRFGLIDRKAMRRRARELLARLGLDIDPD 140
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
L G ++S Q+Q V +ARA+ ++ V I D+P +AL ++FD I
Sbjct: 141 TLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-I 188
Query: 333 RGEL--SGKTRVLVTNQLHFLSQV----DRII------LVHEGMVKEEGTFEDL 374
R L G + ++ H L +V DRI +V E + ++L
Sbjct: 189 R-RLKAQGVAIIYIS---HRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDEL 238
|
Length = 500 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 42/237 (17%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224
E+ L N+N++I G V ++G TG GK++LI + G L P S +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78
Query: 225 --IRGTVAYVPQVS--WIFNATVRDNILFG------SAFE-PARYEKAIDVTSLQHD--L 271
IR V V Q +F T+ +I FG S E R ++A+++ L ++
Sbjct: 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK 138
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
D P +SGGQK+RV++A V + I D+P + LD GR
Sbjct: 139 DKSP-----------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK-GRDEILNK 186
Query: 332 IRGELSGK---TRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
I+ EL + T +LV++ + +++ DRII++++G + +GT ++ E + +
Sbjct: 187 IK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESI 242
|
Length = 287 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 2e-11
Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 9/271 (3%)
Query: 749 ENSLNAVERVGNYIELPSEAPLVIES--NRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 806
E +L E + +E P + +S R PG +K ++V + P P +
Sbjct: 891 ERALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVK--NLVKIFEPSGRPAVDR 948
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866
L+ T + +G GAGK++ L+ L ++ G +L+ G DI + L +R+ LG+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926
PQ +LF F WE A L+ GL + +E ++ S
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDTGLHHKRNEEAQDLSG 1064
Query: 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI- 985
G ++ LS++ A + +K++VLDE T+ VD + I + + T+++ H ++
Sbjct: 1065 GMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEAD 1124
Query: 986 IDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
+ DRI ++ GR+ TP L + G+ F
Sbjct: 1125 LLGDRIAIISQGRLYCSGTPLFLKNCFGTGF 1155
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 61/223 (27%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 173 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------- 219
+ E L + L + G VAIVG +G GK++L++ + G P S
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77
Query: 220 --DASAVIRG-TVAYVPQ-VSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQ 268
DA A +R V +V Q I N T +N+ SA A + ++ L
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG 137
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
L P +SGG++QRV++ARA DV D+P LD G ++
Sbjct: 138 KRLTHYPA-----------QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 329 DRCIRGELS---GKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368
D + L+ G T VLVT+ ++ DR + + G + E+
Sbjct: 187 D--LLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 43/223 (19%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLM 858
+L G+ + + V IVG +G+GKS++L L + + G + + G + K
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 859 DLR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALER----AHLKDAIRRNS--- 910
LR + +G + QS F+L P ALE L+ +S
Sbjct: 84 ALRARHVGFVFQS---------FHLIPN--------LTALENVALPLELRGESSADSRAG 126
Query: 911 -------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----- 958
+GL +++ S G++Q ++L+RA R +L DE T +D T
Sbjct: 127 AKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIA 186
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
D L RE + T++++ H CDR L L SGR++E
Sbjct: 187 DLLFALN-RE--RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 32/232 (13%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELP---- 216
+I + + + L +I LD P G + ++G +G GK+SL+ + L E+P
Sbjct: 2 SIQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
Query: 217 -------------PVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAI 262
P A +R V V Q ++ + TV+ N++ P R
Sbjct: 59 LNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEA----PCRVLGLS 114
Query: 263 DVTSLQHDLDLLPGGDVTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+L LL + +R +++SGGQ+QRV++ARA+ V +FD+P +ALD
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 322 HVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGT 370
+ Q+ I EL+ G T+V+VT+++ + R++ + G + E+G
Sbjct: 175 EITAQIVS--IIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
|
Length = 242 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 31/221 (14%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 225
R + ++L + G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMH 70
Query: 226 ---RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
R + Y+PQ + IF TV +NIL + E K L+ L+ +T
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENIL--AVLEIRGLSKKEREEKLEELLEEF---HITH 125
Query: 282 IGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGELSGK 339
+ + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L +
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA---VQDIQKIIKILKDR 182
Query: 340 -TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
VL+T N LS DR +++EG V EGT E+++ N
Sbjct: 183 GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 42/213 (19%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236
E L +++ ++P G + ++G G GK++L+ + G PP S GTV +VS
Sbjct: 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS-------GTVTVRGRVS 86
Query: 237 WIF--------NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+ T R+NI E I + +E+
Sbjct: 87 SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII--------------EFSEL 132
Query: 283 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 337
G+ S G K R++ A A D+ + D+ L+ DA + R +R L
Sbjct: 133 GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR-LRELLKQ 191
Query: 338 GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 369
GKT +LV++ + ++ DR +++ +G ++ +G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 47/230 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAML------------------------GELP 216
L +N + G VA++G +G GK++++ ++ G L
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 217 PVSDAS-AVIRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARYEKA----IDVTS 266
P + +R + V Q +F + TV DN+ A EK +D+
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
L D +P +SGGQ+QRV++ARA+ V +FD+ SALD + +
Sbjct: 136 LADKADHMP-----------AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 327 VFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
V + R T +LVT+++ F + DR+ +G + E+G +++
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 38/269 (14%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I ++N F + E+ TL +++ + G ++I+G G GK++ + + G L S
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 223 AV------------IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268
+ IR + V Q + ATV D++ FG + +E+ +
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEM--KERVN 122
Query: 269 HDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
L+L+ + + ER +SGGQKQRV++A AV + I D+ S LD GR
Sbjct: 123 EALELV---GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLE 178
Query: 328 FDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE------ 379
+ I+G + T + +T+ L ++ DR++++ G V+ T +L + G
Sbjct: 179 LIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLG 238
Query: 380 --------LFQKLMENAGKMEE-YVEEKE 399
L Q L +N + E Y+ EKE
Sbjct: 239 LDIPFTTSLVQSLRQNGYDLPEGYLTEKE 267
|
Length = 279 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-11
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 22/201 (10%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVIRGTV----------AYVPQVSWI 238
G L+A++G +G GKT+L++A+ P S ++ G AYV Q
Sbjct: 51 GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLF 110
Query: 239 FNA-TVRDNILFGSAFE-PARY---EKAIDVTSLQHDLDLLPGGDVTEIGERGV--NISG 291
TVR++++F + P R EK V + L L + T IG G +SG
Sbjct: 111 IPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSG 169
Query: 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ--LH 349
G+++R++ A + ++ + D+P S LD+ + V GKT + +Q
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229
Query: 350 FLSQVDRIILVHEGMVKEEGT 370
D+IIL+ EG V G+
Sbjct: 230 LFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-11
Identities = 73/277 (26%), Positives = 122/277 (44%), Gaps = 33/277 (11%)
Query: 108 SLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRN 167
SL+L LR PL + +++A V+ ++ + LA K P P + +RN
Sbjct: 269 SLTLL-FLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPDWQTLELRN 327
Query: 168 GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML--GELPPVS-----D 220
F++ ++ INL I G L+ ++GG G GK++L AML G P S D
Sbjct: 328 VTFAYQ--DNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--AMLLTGLYQPQSGEILLD 383
Query: 221 ASAVIRGT-VAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLD 272
V Y S +F D LF G PA EK ++ + H L+
Sbjct: 384 GKPVTAEQPEDYRKLFSAVFT----DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE 439
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
L G ++ + +S GQK+R+++ A+ D+ + D+ + D H R+ F + +
Sbjct: 440 -LEDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDEWAADQDPHF-RREFYQVL 492
Query: 333 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 367
L GKT +++ H+ DR++ + G + E
Sbjct: 493 LPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 33/224 (14%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 225
+R + +++L++ G +V ++G G GKT+ ++G + P D+ ++
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPM 73
Query: 226 ----RGTVAYVPQVSWIF-NATVRDNI-LFGSAFEPARY--EKAIDVTSLQHDLDLLPGG 277
R + Y+PQ + IF TV DNI E E+ ++ +L + +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR 133
Query: 278 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-RCIRGEL 336
D + ++SGG+++RV +ARA+ +N + D+P + +D V D + I L
Sbjct: 134 D-----SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA---VIDIQRIIKHL 185
Query: 337 SGK-TRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
+ VL+T N L DR ++ +G V EG+ E++ NN
Sbjct: 186 KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 4e-11
Identities = 105/515 (20%), Positives = 196/515 (38%), Gaps = 41/515 (7%)
Query: 509 SLLSFGQV-LVTLANSYWLIISSLYAAKR----LHDAMLHSILRAPMVFFHTNPLGRIIN 563
SL SFG + L+ L I YA L A+ IL AP+ +I
Sbjct: 55 SLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIP 114
Query: 564 RFAKDLGDIDR------NVAVFVNMFMGQVSQL--LSTFVLIGIVSTMSLWAIMPLLLLF 615
D+ I+ +A+ + +F ++ L LS + +S + + LL F
Sbjct: 115 LLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA-QLLAF 173
Query: 616 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 675
+ ++ + E + T + + ++G+ R A+ + + D +I
Sbjct: 174 MGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIR--RLSFAHGAIQESANNIADLHI 231
Query: 676 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT 735
L+ + A + + ++ G ++ A FA + + A + LL Y
Sbjct: 232 IEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAIS-----AFVLALL--YIKGPL 284
Query: 736 SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP--SSGSIKFEDVV 793
+L + L + + A+ + + G P + +++ S SI+ +DV
Sbjct: 285 EMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDV- 343
Query: 794 LRYRPELPP-----VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848
P+ P L + I D V IVG G GKS++ + + G IL+D
Sbjct: 344 -HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402
Query: 849 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 908
G ++ D R + I LF + + + +A + L+R + D ++
Sbjct: 403 GAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQY--LQRLEIADKVKI 460
Query: 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968
G + S GQ++ L+L A L IL+ DE A D + +
Sbjct: 461 EDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 969 EFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
+ K T++II+H D+I+ L +G +++
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 37/227 (16%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRI----LIDGFDIAKFGLMDL 860
L+F++ + +GIVG +G+GKS T F ++ L GRI +G +I +L
Sbjct: 35 LNFSLRAGETLGIVGESGSGKS---QTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91
Query: 861 RKI----LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEAL---ERAHLKDAIRRNSLGL 913
K+ + +I Q P+ +L+P+ + L E L + +A + L
Sbjct: 92 NKLRAEQISMIFQDPMT-------SLNPYMRVGE-QLMEVLMLHKGMSKAEAFEESVRML 143
Query: 914 DA-QVSEAGE-------NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
DA ++ EA + FS G RQ + ++ ALL R K+L+ DE T A+DV A I
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 966 IRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+ E EF + +++I H L + CD++L++ +GR +EY ++
Sbjct: 204 LNELKREFNT-AIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249
|
Length = 330 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 63/238 (26%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLI-----------SAMLGELPPVSDASA----VI 225
L NINL+I G VAI+G +G GK++L+ ++L E ++ +
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 226 RGTVAYVPQ-VSWIFNATVRDNILFG------------SAFEPARYEKAIDVTSLQHDLD 272
R + + Q + I TV +N+L G F E+A+ L+
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA------LE 131
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--R 330
+ G + +R +SGGQ+QRV++ARA+ D+ + D+P+++LD +QV D +
Sbjct: 132 RV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 331 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
I E G T V++ LH + DRI+ + G + +G +L + E+ + +
Sbjct: 190 RINKED-GIT-VIIN--LHQVDLAKKYADRIVGLKAGEIVFDGAPSELDD--EVLRHI 241
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 41/221 (18%)
Query: 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 868
+ + +G++G GAGK+++L + ++ +G + + G K + +G +P
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 869 QS-------PVLFSGTVRFN----LDPFSEHSDAD---LWEALERAHLKDAIRRNSLGLD 914
Q P+ + TV + AD + +AL R L + R
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADR------ 109
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 973
GE S GQRQ + ++RAL R +L+LDE +D+ T Q+ + E F
Sbjct: 110 ----PVGE-LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELA 160
Query: 974 ----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009
+L+ H L + CDR++LL+ GRV+ TP++L
Sbjct: 161 GAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 52/226 (23%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDG--FDIAKFGL 857
+L+ +S + + I+G +G+GK+++L+ + VE G+IL +G +F
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF-- 79
Query: 858 MDLRKILGIIPQSPVLFSG-TVRFNL---------DPFSEHSDADLWEALERAHLKDAIR 907
+K + + Q +L G TVR L S+ E + L
Sbjct: 80 ---QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI 136
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
+L + S G+R+ +S++ LL K+L+LDE T+ +D T + T+
Sbjct: 137 GGNLV---------KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 968 EEFKSCTMLIIAHRLNTIIDC-------------DRILLLDSGRVL 1000
+ +A R N I+ DRILLL SG ++
Sbjct: 188 Q---------LARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 5e-11
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDI--AKFG 856
L+ ++ I + ++G +G GKS+ L TL R+ +L G ++ +G +I F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 899
+++LR+ +G++ Q+P F ++ N LD E S + LW
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN---- 138
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD + N+L L S GQ+Q L ++R L ++++DE T+A+D +
Sbjct: 139 -EVKDKLNTNALSL-----------SGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST 186
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
I++ I +S T++I+ H + DR +G + E + +EL N
Sbjct: 187 GKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
|
Length = 254 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 5e-11
Identities = 60/214 (28%), Positives = 109/214 (50%), Gaps = 35/214 (16%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTV-------- 229
N+NL I G++V ++G +G GKT+++ + G P D V ++
Sbjct: 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83
Query: 230 ----AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
A P +S + +N+ +G + K ++ L+L+ D+ +R
Sbjct: 84 FQSYALFPHMS------LGENVGYG--LKMLGVPKEERKQRVKEALELV---DLAGFEDR 132
Query: 286 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---GKTR 341
V+ ISGGQ+QRV++ARA+ V +FD+PLS LDA++ R + ++ IR EL T
Sbjct: 133 YVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK-IR-ELQQQFNITS 190
Query: 342 VLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+ VT +Q + D +I++++G + + G+ ++L
Sbjct: 191 LYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 6e-11
Identities = 53/225 (23%), Positives = 103/225 (45%), Gaps = 16/225 (7%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I I + +++ +P L ++ I G V I G TG GK+SL A + + D
Sbjct: 20 IKIHDLCVRYENNL-KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGK 77
Query: 223 AVI-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
VI R ++ + Q +F+ ++R N+ R +A+++ L++
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
+ LPGG + E G N S GQ+Q +ARA S + I D+ +++D +
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT-ENILQ 196
Query: 330 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+ + + +T V + +++ + D ++++ G++ E T E+L
Sbjct: 197 KVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 30/232 (12%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--FRIVELERGRILIDGFDIAKFGLMD 859
+L G++ T+ + I+G G+GKS++ T+ E+ G IL DG DI +
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL-----E 72
Query: 860 L------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS--L 911
L R + + Q PV G V N D +A ++ + L
Sbjct: 73 LSPDERARAGIFLAFQYPVEIPG-VT-NSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 912 GLDAQVSE--AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL--IQKTIR 967
GLD + E E FS G+++ + + LL K+ +LDE + +D+ DAL + + I
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI--DALKIVAEGI- 187
Query: 968 EEFKS--CTMLIIAH--RLNTIIDCDRILLLDSGRVLEYDTPE--ELLSNEG 1013
+ +LII H RL I D++ +L GR+++ PE E L +G
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEEKG 239
|
Length = 251 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 64/251 (25%), Positives = 117/251 (46%), Gaps = 51/251 (20%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I+I N S+ +K L +++LDIP G + +I+G G GK++L+S M L
Sbjct: 2 ITIENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM-SRLLKKDSGE 57
Query: 223 AVIRG-------------TVAYVPQVSWI-FNATVRDNILFGSAFEPARY---------- 258
I G ++ + Q + I TVRD + FG R+
Sbjct: 58 ITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFG------RFPYSQGRLTKE 111
Query: 259 -EKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPL 316
+ I+ ++ L + ++ +R ++ +SGGQ+QR +A + ++D + D+PL
Sbjct: 112 DRRIINEA-----IEYL---HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163
Query: 317 SALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373
+ LD Q+ R + EL GKT V+V + ++F S D I+ + G V ++G+ ++
Sbjct: 164 NNLDMKHSVQIMKILRRLADEL-GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDE 222
Query: 374 L---SNNGELF 381
+ E++
Sbjct: 223 IIQPEILSEIY 233
|
Length = 252 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 7e-11
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 12/178 (6%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+ GLSFT+ + + + G G+GK+++L L + GR+L++G + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 863 ILGIIPQSPVLFSGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+L + + + +V NL + ++HSD + EAL R GL+
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV-----------GLNGFEDRPV 123
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 979
S GQ++ ++L+R LL + +LDE T A+D A + + M+++
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLT 181
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 49/214 (22%), Positives = 105/214 (49%), Gaps = 11/214 (5%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+ +SF +PP + G++G GAGK++ + ++E G I +G +++ +++
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKN 72
Query: 863 ILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+G +P+ L+ TV L +E E + L+ + R L + + ++
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEI--QKKLQAWLER--LEIVGKKTKKI 128
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIREEFKSCTMLIIAH 980
+ S G +Q + A++ ++L+LDE + +D V + L + + T++ +H
Sbjct: 129 KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSH 188
Query: 981 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013
R+ + + CDR+L+L G+ + Y T E++ + G
Sbjct: 189 RMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 7e-11
Identities = 50/196 (25%), Positives = 99/196 (50%), Gaps = 31/196 (15%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 859
+S P + I+G +G GKS++L ++ R+ +L G+IL+D DI G+ +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 860 LRKILGIIPQSPVLFSG-------TVRFNLDPFSEHSDAD--LWEALERAHL----KDAI 906
+R+ +G++ Q P F + L+ S+AD + +L+R L KD +
Sbjct: 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL 142
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
+ N++ L S GQ+Q L ++R + + +++++DE +A+D + I++ I
Sbjct: 143 KSNAMEL-----------SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELI 191
Query: 967 REEFKSCTMLIIAHRL 982
E + T++I+ H +
Sbjct: 192 EELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-11
Identities = 56/228 (24%), Positives = 103/228 (45%), Gaps = 34/228 (14%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E+V R+ L L+ I + V ++G +G GK++ L + + E GRI
Sbjct: 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL-KD 904
I G D+ D R I ++ Q+ L+ TV N+ F L+ + KD
Sbjct: 59 IGGRDVTDLPPKD-RDI-AMVFQNYALYPHMTVYDNI-AF----------GLKLRKVPKD 105
Query: 905 AIRR------NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
I L ++ + + S GQRQ ++L RA++R K+ ++DE + +
Sbjct: 106 EIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL---- 161
Query: 959 DALIQKTIREEFKS------CTMLIIAH-RLNTIIDCDRILLLDSGRV 999
DA ++ +R E K T + + H ++ + DRI +++ G++
Sbjct: 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 8e-11
Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYV 232
+N + G + +G G GKT+ I + L P S + V +R ++ V
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIV 71
Query: 233 PQ-VSWIFNATVRDNILFGSAF----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287
PQ S + T R+N+ + E+A + LL ++ E +R V
Sbjct: 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEE---------LLELFELGEAADRPV 122
Query: 288 -NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTN 346
SGG ++R+ +A ++ DV D+P + LD R ++D IR +L+T
Sbjct: 123 GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY-IRALKEEGVTILLTT 181
Query: 347 QLHFLSQV----DRIILVHEGMVKEEGTFEDL 374
H++ + DRI ++ G + EGT E+L
Sbjct: 182 --HYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-11
Identities = 52/188 (27%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 245
+I G ++ I+G G GKT+ + + G + P + ++ V+Y PQ +S ++ TV D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK--VSYKPQYISPDYDGTVED 420
Query: 246 NILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVY 304
+ + + + T + L+L + ER V +SGG+ QRV++A A+
Sbjct: 421 ---LLRSAIRSAFGSSYFKTEIVKPLNLED------LLERPVDELSGGELQRVAIAAALS 471
Query: 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVH 361
+D+++ D+P + LD R + + IR E + KT ++V + ++ + V DR+I V
Sbjct: 472 READLYLLDEPSAYLDVE-QRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI-VF 529
Query: 362 EGMVKEEG 369
EG + G
Sbjct: 530 EGEPGKHG 537
|
Length = 591 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 43/199 (21%)
Query: 152 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI-- 208
+ + I +RN F + A L NINLDI + A +G +G GK++L+
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYGKFHA----LKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 209 ---------------SAML-GE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 250
+L GE L P D A++R V V Q F ++ DNI FG
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDI-ALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 251 -SAFEP-------ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMAR 301
FE R E A+ +L +++ D L + G ++SGGQ+QR+ +AR
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKL--------HQSGYSLSGGQQQRLCIAR 169
Query: 302 AVYSNSDVFIFDDPLSALD 320
+ +V + D+P SALD
Sbjct: 170 GIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (156), Expect = 1e-10
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 12/190 (6%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 855
VLH L+ I + +G +G GKS+ L L ++ +L G I G + K
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS---DADLWEALERAHLKDAIRRNSLG 912
++LR +G++ Q P F ++ N+ ++ D + E + LK A + +
Sbjct: 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK 216
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972
D + +AG S GQ+Q L ++RA+ ++L++DE T+A+D A I++ I E K
Sbjct: 217 DD--LDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKK 274
Query: 973 CTMLIIAHRL 982
+++I+ H +
Sbjct: 275 YSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 45/210 (21%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231
++ + G + ++G G GKT+ I + L P S + V +R +
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77
Query: 232 VPQVSWIFNA-TVRDNI-LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 288
V Q + + T +N+ + + E+ + +LL + E +R V
Sbjct: 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERR------ERIDELLDFVGLLEAADRLVKT 131
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348
SGG ++R+ +AR++ +V D+P LD V++ + + +L+T
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTT-- 189
Query: 349 HFLSQV----DRIILVHEGMVKEEGTFEDL 374
H++ + DR+ ++ G + EGT E+L
Sbjct: 190 HYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 61/243 (25%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG------- 213
I +N F + S A TL +++ +IP G +IVG G GK+++ M+G
Sbjct: 6 SIIVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 214 -----ELPPVSDASAVIR---GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID-V 264
D +R G V P ++ + V+ ++ FG Y++ V
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRV 123
Query: 265 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
+ +D+L D +SGGQKQRV++A + N V I D+ S LD
Sbjct: 124 SEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-A 177
Query: 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF 381
RQ +R ++ + + + + H LS+ D +I++++G V +EGT ++ ++ E
Sbjct: 178 RQNLLDLVR-KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
Query: 382 QKL 384
++
Sbjct: 237 TRI 239
|
Length = 269 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 794 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---F 850
L +R L +FT+P + G +G+GK+S++N + + + GRI ++G
Sbjct: 4 LNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLV 63
Query: 851 DIAK--FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIR 907
D K F + R+I G + Q LF TVR NL S RA +
Sbjct: 64 DAEKGIFLPPEKRRI-GYVFQDARLFPHYTVRGNLRYGMWKSM--------RAQFDQLVA 114
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--K 964
LG++ + S G++Q +++ RALL ++L++DE A++D+ R ++ +
Sbjct: 115 --LLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172
Query: 965 TIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+R+E +L ++H L+ ++ DR+++L++G+V EE+ +
Sbjct: 173 RLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 22/194 (11%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQV 235
I+ + G + ++G G GKT+ I +LG + P S R + Y+P+
Sbjct: 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEE 78
Query: 236 SWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGG 292
++ V D ++ + E + L+L +E + V +S G
Sbjct: 79 RGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLEL------SEYANKRVEELSKG 132
Query: 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHF 350
+Q+V AV + ++ I D+P S LD V ++ IR EL +GKT +L T+Q+
Sbjct: 133 NQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIR-ELARAGKTVILSTHQMEL 190
Query: 351 LSQV-DRIILVHEG 363
+ ++ DR++L+++G
Sbjct: 191 VEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 36/233 (15%)
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------- 227
+ L NIN P S +A++G G GK++L G L P S S +IRG
Sbjct: 14 SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS-GSVLIRGEPITKEN 72
Query: 228 ------TVAYVPQVS--WIFNATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLD 272
V V Q IF+ TV +I FG R A+ + L+ D
Sbjct: 73 IREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD 132
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
+P ++SGG+K+RV++A + V + D+P + LD +++ D
Sbjct: 133 RVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181
Query: 333 R-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQK 383
E G T + T+QL + ++ D I ++ +G + GT E++ +L +
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
|
Length = 277 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-10
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 55/240 (22%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+ ++ S+D K + I+LD+ G + +VG +G GK++L+ M+ L ++
Sbjct: 3 GLKLQAVRKSYDGKT--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLR-MVAGLERITSG 59
Query: 222 SAVIRGTV-----------AYVPQVSWIFN------ATVRDNILFG-------SAFEPAR 257
I G V A V Q N +VR+N+ +G A R
Sbjct: 60 EIWIGGRVVNELEPADRDIAMVFQ-----NYALYPHMSVRENMAYGLKIRGMPKAEIEER 114
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
+A + L+ LD P R +SGGQ+QRV+M RA+ VF+FD+PLS
Sbjct: 115 VAEAARILELEPLLDRKP---------R--ELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 318 ALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 370
LDA + Q +R E+ T + VT +Q+ ++ DR+++++ G+ ++ GT
Sbjct: 164 NLDAKLRVQ-----MRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGT 218
|
Length = 356 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 32/229 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---------FDIAK 854
L+ LSF++ P + ++G GAGK+++++ + + G +L DG IA+
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 855 FGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN---- 909
G+ RK Q P +F TVR NL+ + + D ++ +L A L+ RR
Sbjct: 81 AGIG--RKF-----QKPTVFENLTVRENLE-LALNRDKSVFASL-FARLRAEERRRIDEL 131
Query: 910 --SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-- 965
++GL + S GQ+Q L + L + K+L+LDE A + TDA +KT
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM---TDAETEKTAE 188
Query: 966 -IREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
++ ++L++ H + + + D++ +L G VL + +E+ ++
Sbjct: 189 LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 48/212 (22%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 855
+L G+S I S I+G +G GKS+ L L R+ ELE GR+ +I +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 856 GLMDLRKILGIIPQSPVLFSGTV---------------RFNLDPFSEHS--DADLWEALE 898
L LR+ + ++ P LF +V + +D E + DADLW+
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWD--- 138
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--- 955
+K I +++L L S GQ+Q L ++RAL + K+L++DE +D
Sbjct: 139 --EIKHKIHKSALDL-----------SGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 956 -VRTDALIQK-TIREEFKSCTMLIIAHRLNTI 985
++ ++LIQ +R E TM+I++H L+ +
Sbjct: 186 SMKVESLIQSLRLRSEL---TMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 23/230 (10%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 865
+SFT+ + I+G G+GKS++ L ++E G ILI+ + FG R K +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLH-FGDYSFRSKRIR 90
Query: 866 IIPQSPVLFSGTVRFN--------LD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 916
+I Q P N LD P ++D + + ++ + + +R L L
Sbjct: 91 MIFQDP-----NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQ--IFETLRMVGL-LPDH 142
Query: 917 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRTDALIQKTIREEFKSCT 974
+ + GQ+Q ++L+RAL+ R KI++ DEA A++D +R+ + +E + +
Sbjct: 143 ANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGIS 202
Query: 975 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK-MVQS 1022
+ + + I D++L++ G V+E + ++L++ +K +++S
Sbjct: 203 YIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIES 252
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 46/185 (24%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 863
IP ++G +G GKS++L +L R+ +L +GR+L DG D+ + +++R+
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 864 LGIIPQSPVLFSGTVRFNL------DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 917
+G++ Q P F ++ N+ + ++ D + +L +A + D + ++
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-------KL 148
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 977
+E+G + S GQ+Q L ++R + +++++DE +A+D + I++T+ E K+ T++I
Sbjct: 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208
Query: 978 IAHRL 982
+ H +
Sbjct: 209 VTHNM 213
|
Length = 269 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 52/225 (23%), Positives = 102/225 (45%), Gaps = 25/225 (11%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863
L+ LS + P + I+G GAGK++M++ + + G +L G D+ + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG---LPEHQI 74
Query: 864 --LGIIP--QSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR------NSLG 912
GI Q P +F TV NL+ + D ++ +L L + ++G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLE-LALPRDKSVFASL-FFRLSAEEKDRIEEVLETIG 132
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT---IREE 969
L + S GQ+Q L + L++ K+L+LDE A + TD +KT ++
Sbjct: 133 LADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSL 189
Query: 970 FKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNE 1012
+++++ H + + I ++ +L G VL + +++ ++
Sbjct: 190 AGKHSVVVVEHDMEFVRSIAD-KVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 3e-10
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 27/196 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI----DGFDIAKFG- 856
PVL +S T+ + V + G +GAGKS++L +L+ + GRIL+ D+A+
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 857 --LMDLRK--------ILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
++++R+ L +IP+ + +P E A RA ++ +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVS-----ALEVVAEPLLERGVPRE-AARARA--RELL 133
Query: 907 RRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
R L + ++ FS G++Q ++++R + IL+LDE TA++D ++ +
Sbjct: 134 AR--LNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 966 IREEFKS-CTMLIIAH 980
I E ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 30/199 (15%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKF 855
+L ++ IP + ++G +G GKS+ + TL R+ +L G I +DG DI
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFNL------------DPFSEHSDADLWEALERAHLK 903
+++LRK +G++ Q P F ++ N+ D E + L A +K
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK 137
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
D + +++LGL S GQ+Q L ++R + +++++DE +A+D + I+
Sbjct: 138 DKLDKSALGL-----------SGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIE 186
Query: 964 KTIREEFKSCTMLIIAHRL 982
I + + T++I+ H +
Sbjct: 187 DLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 3e-10
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 22/222 (9%)
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--M 858
++ + ++G +G GK++ L + R+ +L GRIL+DG DI + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG------ 912
+R+ +G++ Q P F F+ + + L +R HL + R+ G
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFD----NVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972
+ ++ S GQ+Q L ++RAL +IL++DE T+A+D + A I+ + + K
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 973 CTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSN 1011
T++I+ H ++ + D L+ G ++E+ ++L +N
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLV--GDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 50/233 (21%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLMD-- 859
L+ +S+T + I+G +G+GKS+++ +++ + G I + I K +
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 860 -------------LRKILGIIPQSP--VLFSGTVRFNL--DPFSEHSDADLWEALERAHL 902
LR+ + ++ Q P LF T+ ++ P + L A
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA------LGVKKSEAKK 154
Query: 903 KDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
N +GLD E S GQ++ ++++ L + +IL+ DE TA +D + +
Sbjct: 155 LAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214
Query: 962 IQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ + I + + T+ +I H + +++ D ++++D G++L+ TP E+ +++
Sbjct: 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 29/236 (12%)
Query: 805 HGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860
L+ ++ + + +VG +G+GKS ++L L + G IL+DG + L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL--PLSIR 60
Query: 861 RKILGIIPQSPV-----LFS------GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909
+ + I Q+P LF+ T+R +L S+ + A + EALE L D
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLR-SLGKLSKQARALILEALEAVGLPDPEEV- 118
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 968
L + S G Q + ++ ALL L+ DE T +DV A + K +RE
Sbjct: 119 ---LKKYPFQ----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 969 -EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+ +L+I H L + D + ++D GR++E T +E+ N ++ + S
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 35/243 (14%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM-LGELPPVSDASAVIRGT----------V 229
L N++L +P G + ++G +G GK++LI + L E P + S ++ G
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLTTLSNSELT 78
Query: 230 AYVPQVSWIF-------NATVRDNILFGSAFEPARYEKA-IDVTSLQHDLDLLPGGDVTE 281
Q+ IF + TV N+ + ++ VT L L L+ GD +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTEL---LALVGLGDKHD 135
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGK 339
N+SGGQKQRV++ARA+ SN V + D+ SALD + + + + I L G
Sbjct: 136 --SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GL 192
Query: 340 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKM---EE 393
T +L+T+++ + ++ D + ++ G + E+GT ++ ++ L QK + + + E+
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLHLSIPED 252
Query: 394 YVE 396
Y E
Sbjct: 253 YQE 255
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 59/205 (28%), Positives = 101/205 (49%), Gaps = 18/205 (8%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
VL G+ FT+ + ++G GAGKS+++ + IV + G + I G A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 862 KILGI--IPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 917
+ LGI +PQ P+LF +V+ N L + + +++ A L LD+
Sbjct: 85 Q-LGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----MQKMKQLLAALGCQLDLDSSA 138
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD-VRTDALIQKTIRE-EFKSCTM 975
+ V RQ++ + R L+R S+IL+LDE TA++ T+ L + IRE + +
Sbjct: 139 G----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGI 193
Query: 976 LIIAHRLNTIID-CDRILLLDSGRV 999
+ I+H+L I DRI ++ G +
Sbjct: 194 VFISHKLPEIRQLADRISVMRDGTI 218
|
Length = 510 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 152 PNPP-LTSGLPAI--SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 208
N L G P + ++ Y ER L ++L IP G VA+VG +G GK++L+
Sbjct: 2 MNTARLNQGTPLLLNAVSKRY------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL 55
Query: 209 SAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR---YEKAIDVT 265
+ G P A ++ GT A R++ F+ AR ++K ID
Sbjct: 56 RLLAGLETP--SAGELLAGTAPL---------AEAREDTRL--MFQDARLLPWKKVIDNV 102
Query: 266 SL-------QHDLDLLPG-GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
L L L G E +SGGQKQRV++ARA+ + + D+PL
Sbjct: 103 GLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG 162
Query: 318 ALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQ----VDRIILVHEGMV 365
ALDA + R I + G T +LVT H +S+ DR++L+ EG +
Sbjct: 163 ALDA-LTRIEMQDLIESLWQQHGFTVLLVT---HDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-10
Identities = 69/279 (24%), Positives = 116/279 (41%), Gaps = 34/279 (12%)
Query: 719 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE-LPSEAPLVIESNRP 777
A +G L+ ++T L R+ +L L+ V+ GN+ E E R
Sbjct: 378 KAADALGRLMLAGRDMTRLAGFTARVDTLL-QVLDDVKS-GNFKRPRVEEIESGREGGRN 435
Query: 778 PPGWPSSGS-------IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSM 830
P G IKFE++ L P ++ LSF +P + + I G G GKSS+
Sbjct: 436 SNLVPGRGIVEYQDNGIKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSL 494
Query: 831 LNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL------DP 884
L + + GR+ + L +PQ P + GT+R + +
Sbjct: 495 FRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543
Query: 885 FSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942
SD DL + L+ L + R G A V + + S G++Q ++++R +
Sbjct: 544 MKRRGLSDKDLEQILDNVQLTHILERE-GGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 981
+ +LDE T+AV V + + + RE T+ ++HR
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 4e-10
Identities = 56/224 (25%), Positives = 108/224 (48%), Gaps = 23/224 (10%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 855
VL ++ P I+G +G GKS++L L R+ ++ G +L+D +I
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 856 GLMDLRKILGIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALER----AHLKDAIR 907
+++LRK +G++ Q P F + V F + + L E +E+ A L D ++
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK 138
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
N + ++G S GQ+Q L ++R L +++++DE +A+D + I++ ++
Sbjct: 139 DN-------LHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
Query: 968 EEFKSCTMLIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELLS 1010
E ++ T+ I+ H + D L +G ++EY E+ S
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235
|
Length = 251 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 57/244 (23%), Positives = 114/244 (46%), Gaps = 29/244 (11%)
Query: 162 AISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
+ ++ F++ DSK +P L +I+ IP GS A++G G GK+++ + G L P +
Sbjct: 5 IVEFKHVSFTYPDSK--KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 221 ASAVI---------------RGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAID 263
++ I R V V Q + ATV D++ FG + I
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK 122
Query: 264 VTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
+ D+L + + I N+SGGQKQRV++A + + I D+ S LD
Sbjct: 123 IVR-----DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 323 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 380
Q+ R ++ + + T + +T+ + + D+++++ +G + +G+ ++ + E+
Sbjct: 178 GKEQILKLIRKLKKK-NNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
Query: 381 FQKL 384
+++
Sbjct: 237 LKEI 240
|
Length = 282 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 49/185 (26%), Positives = 78/185 (42%), Gaps = 28/185 (15%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226
L +N G ++A++G G GK++L+ + G L P S A + R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 227 GTVAYVPQ--VSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
V V Q +F A V ++ FG A E+ + + L +
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR--------EALTAVGASG 119
Query: 282 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340
+ ER + +SGG+K+RV++A AV DV + D+P + LD Q+ R G T
Sbjct: 120 LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMT 179
Query: 341 RVLVT 345
V+ T
Sbjct: 180 VVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 37/221 (16%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------------DASAVIR 226
+ +LD+ G + I+G +G GK++L+ + + P + + R
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRR 105
Query: 227 GTVAYVPQVSWIF-NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGD 278
++ V Q + + TV +N+ FG A R +A+++ L+ D P
Sbjct: 106 KKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN-- 163
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS- 337
+SGG +QRV +ARA+ ++ D+ + D+ SALD + ++ D + +
Sbjct: 164 ---------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 338 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
KT V +T+ L L DRI ++ +G + + GT E++ N
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
|
Length = 386 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-10
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 33/249 (13%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-----VEL 840
+I+ V R + + V++ +S I + + +VG +G+GKS ++ R+ V
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 841 ERGRILIDGFDIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSEHS-DADLWE 895
G I G + LR + G +I Q P++ +L+P H+ + L+E
Sbjct: 67 PSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPL--HTLEKQLYE 117
Query: 896 --ALERAHLKDAIRRNSLG-LD--------AQVSEAGENFSVGQRQLLSLSRALLRRSKI 944
+L R ++A R L LD ++++ S G+RQ + ++ ALL R ++
Sbjct: 118 VLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPEL 177
Query: 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLE 1001
L+ DE T A+DV A I + +RE + M L I H L+ + DR+ ++ +GR +E
Sbjct: 178 LIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237
Query: 1002 YDTPEELLS 1010
+ L S
Sbjct: 238 QNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-10
Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 45/225 (20%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
V+ +SFT+ P + +G+VG +G+GKS+ L R++ +G I DG + + R+
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL---NRRQ 356
Query: 863 ILGIIPQSPVLFSGTVRFNLDPFSE-----HSDADLWEALE--RAHLKDAIRR------- 908
+L + + V+F DP S + + E L + L A R
Sbjct: 357 LLPVRHRIQVVFQ-------DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVM 409
Query: 909 NSLGLDAQV-----SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
+GLD + +E FS GQRQ ++++RAL+ + +++LDE T+++D +T +Q
Sbjct: 410 EEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLD-KT---VQ 461
Query: 964 KTIREEFKS------CTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001
I KS L I+H L+ + C ++++L G V+E
Sbjct: 462 AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 69/249 (27%), Positives = 117/249 (46%), Gaps = 39/249 (15%)
Query: 787 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
I F+ V RY+ + P L+ ++ +IP V I+G TG+GKS++L L +++ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 844 RILIDGFDIAKFG-----LMDLRKILGIIPQSP--VLFSGTVR----FNLDPF--SEHSD 890
+ I G + G L LRK +GI+ Q P LF TV F F SE
Sbjct: 63 TVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE-- 119
Query: 891 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDE 949
+A ++A ++ I +GL ++ S GQ + ++++ L ++LVLDE
Sbjct: 120 ----DAKQKA--REMIEL--VGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 950 ATAAVDVRTDALIQKTIREEF------KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002
TA +D + +K + E F K T +++ H + D+I+++ G V
Sbjct: 172 PTAGLDPKG----RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQ 227
Query: 1003 DTPEELLSN 1011
TP E+ ++
Sbjct: 228 GTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 61.5 bits (149), Expect = 6e-10
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 23/189 (12%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 231
+++ I G ++G G GK+++ +LG + P V + + R +
Sbjct: 22 DLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81
Query: 232 VPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289
VPQ + TVR+N+L FG F + E + SL L DV R +
Sbjct: 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADV-----RVALL 136
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQL 348
SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GKT +L T
Sbjct: 137 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTT--- 192
Query: 349 HFLSQVDRI 357
HF+ + +R+
Sbjct: 193 HFMEEAERL 201
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 6e-10
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 45/237 (18%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFG-- 856
L+ ++ +IP + ++G +G GKS++L R+ +L G IL +G +I G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALER 899
++ LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD---- 137
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD + ++L L S GQ+Q L ++R L +++++DE +A+D
Sbjct: 138 -EVKDRLHDSALSL-----------SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
A I+ I + K T++I+ H + + D + L G+++E+D ++ N
Sbjct: 186 AKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYL--GKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 45/213 (21%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQ-----VSW 237
++ + G + ++G G GKT+ + + G L P A + G V P + +
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-DAGFATVDGFDVVKEPAEARRRLGF 82
Query: 238 IFNA-------TVRDNILF--------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+ ++ T R+N+ + G AR E+ D ++ LD
Sbjct: 83 VSDSTGLYDRLTARENLEYFAGLYGLKGDELT-ARLEELADRLGMEELLD---------- 131
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 340
R S G +Q+V++ARA+ + V + D+P + LD R + + R +R GK
Sbjct: 132 -RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKC 188
Query: 341 RVLVTNQLHFLSQV----DRIILVHEGMVKEEG 369
+ T H + +V DR++++H G V EG
Sbjct: 189 ILFST---HIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 8e-10
Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 29/188 (15%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-------------VSDASAVIRGTV 229
+++L + G + A++G G GK++L+ + G P + IR +
Sbjct: 22 DVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81
Query: 230 AYVPQ-VSWIFNATVRDNILFGSA------FEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
V Q + TV +NI+ G + + I S ++ L + P V ++
Sbjct: 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADL 141
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTR 341
S G++QRV + +A+Y + + I D+P + L ++F+ R GKT
Sbjct: 142 -------SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA-DELFEILRRLAAEGKTI 193
Query: 342 VLVTNQLH 349
+ +T++L
Sbjct: 194 IFITHKLK 201
|
Length = 501 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 8e-10
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 24/214 (11%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG------------- 227
L ++L I G +V ++G G GKT+L+ + G+ P + V G
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-PRATSGRIVFDGKDITDWQTAKIMR 79
Query: 228 -TVAYVPQVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
VA VP+ +F+ TV +N+ G F E ++++ I +L P I +
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWV-----YELFPRLHERRI-Q 133
Query: 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 344
R +SGG++Q +++ RA+ S + + D+P L + +Q+FD + G T LV
Sbjct: 134 RAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLV 193
Query: 345 -TNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
N L DR ++ G V E T + L N
Sbjct: 194 EQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 9e-10
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 51/236 (21%)
Query: 153 NPPLTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS----- 206
+P +SG I R+ F D +A L ++++DIP + A++G +G GK++
Sbjct: 30 DPAASSGETVIEARDLNVFYGDEQA----LDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
Query: 207 -----LISA--MLGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFG-- 250
LI A + GEL V DA +R + V Q F ++ DN+ +G
Sbjct: 86 NRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLK 145
Query: 251 ----SAFEPARYEKAIDVTSL----QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302
R E+++ +L + LD G+++SGGQ+QR+ +ARA
Sbjct: 146 IQGYDGDIDERVEESLRRAALWDEVKDQLD-----------SSGLDLSGGQQQRLCIARA 194
Query: 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 357
+ + +V + D+P SALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 195 IAPDPEVILMDEPASALDPVATSKIED--LIEELAEEYTVVIVT---HNMQQAARI 245
|
Length = 285 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 9e-10
Identities = 71/326 (21%), Positives = 122/326 (37%), Gaps = 59/326 (18%)
Query: 86 TVVSFGMFTLLGGDLTPARAFTSL-------SLFAVLRF--PLFMLPNMITQVVNANVSL 136
F L+G L A F S+ + A+L PL ML + + + A ++
Sbjct: 242 NFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIAC 301
Query: 137 KRMEEFLLAEEKILLPNP-PLTSGLPAISIRNGYFSWDSKAERPTLLN------------ 183
+R+ +F E+ P P S + + S DS + +N
Sbjct: 302 QRLADF---GERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFAL 358
Query: 184 --INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQVS 236
I+L I G +V IVG G GK++L G P D +AV +
Sbjct: 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD-- 416
Query: 237 WIFNATVRDNILFGSAFEPARYEKA--------IDVTSLQHDLDLLPGGDVTEIGERGVN 288
+F+A D LF P E A + + + + GG T
Sbjct: 417 -LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL------SGKTRV 342
+S GQ++R+++ A + + +FD+ + D F R EL GKT +
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDP-----AFKRFFYEELLPDLKRQGKTII 525
Query: 343 LVTNQLHFLSQVDRIILVHEGMVKEE 368
++++ + D+II + G + ++
Sbjct: 526 IISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 45/224 (20%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---------------DAS 222
R L +++L + G +VAI+G G GK++L+ A+ GEL P S
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL 74
Query: 223 AVIRGTVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
A R A +PQ S + F TV + + G A P +A D + L + D+
Sbjct: 75 ARRR---AVLPQHSSLSFPFTVEEVVAMGRA--PHGLSRAEDDALVAAALAQV---DLAH 126
Query: 282 IGERGV-NISGGQKQRVSMARA---VYSNSD---VFIFDDPLSALD-AH---VGRQVFDR 330
+ R +SGG++QRV +AR ++ + D+P SALD AH V R
Sbjct: 127 LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQL 186
Query: 331 CIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 370
L+ V+V LH L+ DRI+L+H+G + +GT
Sbjct: 187 AHERGLA----VIVV--LHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 25/201 (12%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP----------PVSDASAVIRGTVAY 231
++ + G ++G G GKT+ + +LG P PV + R V
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 232 VPQVSWIF-NATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289
VPQ + + TVR+N+L FG F + V L L D ++GE +
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGE----L 139
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQL 348
SGG K+R+++ARA+ ++ DV + D+P + LD +++R +R L GKT +L T
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTT--- 195
Query: 349 HFLSQVDRIILVHEGMVKEEG 369
HF+ + +R L V EEG
Sbjct: 196 HFMEEAER--LCDRLCVIEEG 214
|
Length = 306 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 28/227 (12%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKFGLM 858
L +S ++ + V ++G +G GK+ TL RI+ G I G DI + L
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKT----TLLRIIAGLERQTAGTIYQGGRDITR--LP 72
Query: 859 DLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAH-LKDAIRRNSLGLDAQ 916
++ GI+ QS LF TV N+ ++ E ER L D + GL
Sbjct: 73 PQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGS 127
Query: 917 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK----- 971
+ S GQ+Q ++L+RAL +L+LDE +A+ DA +++ +R E +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL----DARVREHLRTEIRQLQRR 183
Query: 972 -SCTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
T +++ H + + DRI++++ G + + TP+E+ + + F
Sbjct: 184 LGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 61/227 (26%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP 217
+PAI + N F +D++ L ++++I + AI+G +G GK++ + + + EL
Sbjct: 5 IPAIKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL-- 59
Query: 218 VSDASAVIRGTVAYVPQ---------------VSWI------FNATVRDNILFGSAFEPA 256
++ + G V + Q VS + F +V DN+ +G
Sbjct: 60 --ESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 257 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314
R + ID V S D DL +I + +++SGGQ+QR+ +ARA+ V + D+
Sbjct: 118 RPKLEIDDIVESALKDADLWDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 315 PLSALDAHVGRQV----FDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357
P LD +V +R EL T V+V++ LH QV R+
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHNLH---QVSRL 217
|
Length = 261 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 24/221 (10%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
V++ LSFTI + G++G GAGKS++ L ++ +RG+I + G + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARL-ARV 77
Query: 863 ILGIIPQSPVL-FSGTVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVS 918
+G++PQ L TVR NL F + S ++ + L + R S D +V+
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI--PSLLEFARLESKA-DVRVA 134
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLI 977
S G ++ L+L+RAL+ ++L+LDE T +D LI + +R + T+L+
Sbjct: 135 L----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILL 190
Query: 978 IAH------RLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
H RL CDR+ +L+SGR + P L+ +
Sbjct: 191 TTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALIDEQ 226
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
++ +S T+P + G++G GAGKS++L + I+ G I+ DG + DL K
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTR---KDLHK 71
Query: 863 ILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLGL 913
I G + +SP L+ T R NL P S + E L L + ++ +
Sbjct: 72 I-GSLIESPPLYENLTARENLKVHTTLLGLPDSR-----IDEVLNIVDLTNTGKKKA--- 122
Query: 914 DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
+ FS+G +Q L ++ ALL K+L+LDE T +D
Sbjct: 123 --------KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 32/200 (16%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--------------VSDA--- 221
L++++L IP ++A +G +G GK++L+ + +L P + D+
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 222 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT---SLQHDLDLLPGGD 278
S +R V V Q F ++ +NI F Y+ +D SL+ D
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAP--RANGYKGNLDELVEDSLRRAAIWEEVKD 153
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
++ E+G +SGGQ+QR+ +ARA+ DV + D+P SALD RQV + C+ EL
Sbjct: 154 --KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCL--ELKE 209
Query: 339 K-TRVLVTNQLHFLSQVDRI 357
+ T ++VT H + Q R+
Sbjct: 210 QYTIIMVT---HNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 40/202 (19%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKF 855
L +S IP + +G +G GKS++L R+ +L G I +DG +I K
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 856 GLMDLRKILGIIPQSPVLFSGTVRFN---------------LDPFSEHS--DADLWEALE 898
+ +LR+ +G++ Q P F ++ N LD E S A LW+
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD--- 156
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
+KD + N+ GL S GQ+Q L ++RA+ ++L+LDE T+A+D +
Sbjct: 157 --EVKDRLHENAFGL-----------SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIS 203
Query: 959 DALIQKTIREEFKSCTMLIIAH 980
I++ I E T++I+ H
Sbjct: 204 TLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-09
Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 59/252 (23%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAM----LGELPPVSDASAV-------------IR 226
++L+I G +VA++G +G GK++L+ + G+ S + IR
Sbjct: 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82
Query: 227 GTVAYVPQVSWIFNA----TVRDNILFG------------SAFEPARYEKAIDVTSLQHD 270
+ A + FN +V +N+L G S F + ++A+
Sbjct: 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA------ 136
Query: 271 LDLLPGGDVTEIG------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
+T +G +R +SGGQ+QRV++ARA+ + V + D+P+++LD
Sbjct: 137 --------LTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 325 RQVFD--RCIRGELSGKTRVLVTNQLHF-LSQVDRIILVHEGMVKEEGTFEDLSNNGELF 381
R V D R I + G T V+ +Q+ + L +RI+ + +G V +G+ + N E F
Sbjct: 189 RIVMDTLRDI-NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDN--ERF 245
Query: 382 QKLMENAGKMEE 393
L + ++EE
Sbjct: 246 DHLYRSINRVEE 257
|
Length = 262 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 31/225 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
PVL ++ I + + I G TG+GK+S+L + +E G+I G
Sbjct: 51 PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----------- 99
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 920
+ Q + GT++ N+ F D ++++ +A L++ I + + + E
Sbjct: 100 --ISFSSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 973
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE-------KEIFESCVCKLMAN 209
Query: 974 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
T +++ ++ + D+IL+L G Y T E L + FS
Sbjct: 210 KTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFS 253
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 31/231 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+ +SF + + VGI G G G+S ++ + + + GRIL++G D+ R
Sbjct: 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331
Query: 862 KILGI--IPQSP-----VLFSGTVRFNL-------DPFSEHSDADLWEALERAHLKDAIR 907
+ LG+ +P+ VL ++ NL PFS D A+ R ++ I
Sbjct: 332 RRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLD-RRAI-RKFARELIE 388
Query: 908 RNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ DA + S G +Q L L+R L RR +L+ + T +DV I +
Sbjct: 389 EFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHE 444
Query: 965 TIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVL-----EYDTPEEL 1008
+ E + +L+I+ L+ I++ DRI ++ GR++ E T EE+
Sbjct: 445 RLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEATREEI 495
|
Length = 501 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 47/228 (20%)
Query: 160 LPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGEL 215
P I I N + + KA + N+ + I + AI+G +G GKT+L I+ M +
Sbjct: 1 EPIIEIENFSAYYGEKKAVK----NVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI 56
Query: 216 P-----------------PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR- 257
P P D + R V V Q F ++ DN+ FG +
Sbjct: 57 PGFRVEGKIYFKGQDIYDPQLDVT-EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS 115
Query: 258 -------YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310
E+++ +L ++ +E+ + G +SGGQ+QR+ +ARA+ +V
Sbjct: 116 KHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVI 168
Query: 311 IFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 357
+ D+P SALD + Q ++ + ELS T V+VT H + Q RI
Sbjct: 169 LLDEPTSALDP-IATQRIEKLLE-ELSENYTIVIVT---HNIGQAIRI 211
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 38/242 (15%)
Query: 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA------------M 211
S++N + SK L +INLDI + A +G +G GK++ + +
Sbjct: 7 SVKNLNLWYGSKQ---ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV 63
Query: 212 LGEL-----PPVSDASAVI--RGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEKAID 263
GEL S + V+ R V V Q F ++ DN+ +G A+ +K +D
Sbjct: 64 KGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLD 123
Query: 264 VTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 319
+ L G E+G+R +SGGQ+QR+ +ARA+ + + D+P SAL
Sbjct: 124 EIV---EKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 320 DAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLS 375
D V V + I+ T ++VT H + Q DR+ G + E T +++
Sbjct: 181 DP-VATNVIENLIQELKKNFTIIVVT---HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236
Query: 376 NN 377
N
Sbjct: 237 KN 238
|
Length = 251 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 41/189 (21%), Positives = 75/189 (39%), Gaps = 41/189 (21%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQV 235
R L +++ +I G + I G +G GK+SL A L L P + + ++PQ
Sbjct: 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRA-LAGLWPWGSGRIGMPEGEDLLFLPQR 72
Query: 236 SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295
++ T+R+ +++ P DV +SGG++Q
Sbjct: 73 PYLPLGTLREQLIY-------------------------PWDDV---------LSGGEQQ 98
Query: 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVD 355
R++ AR + D+ SALD +++ + T + V ++ D
Sbjct: 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KELGI--TVISVGHRPSLWKFHD 155
Query: 356 RII-LVHEG 363
R++ L EG
Sbjct: 156 RVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 69/252 (27%), Positives = 115/252 (45%), Gaps = 51/252 (20%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDG--FDIAKF---- 855
L ++ P + + ++G +GAGKSS+L L ++E+ R G + I G FD +K
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 856 GLMDLRKILGIIPQS----PVLFSGTVRFNL----------DPFSEHSDADLWEALERAH 901
+ +LR+ +G++ Q P L TV+ NL + A+ + LER
Sbjct: 76 AIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKDQALARAE--KLLERLR 130
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
LK R L L S GQ+Q ++++RAL+ ++L+ DE TAA+D A
Sbjct: 131 LKPYADRFPLHL-----------SGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 962 IQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
I IRE ++ T +I+ H + R++ +++G ++E S F+
Sbjct: 180 IVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD--------ASCFT-- 229
Query: 1020 VQSTGAANAQYL 1031
Q A YL
Sbjct: 230 -QPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 34/240 (14%)
Query: 157 TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216
T+ P + R+ + L I+ + G + A++GG G GK++L+ + G +P
Sbjct: 6 TTAPPLLCARS---ISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62
Query: 217 PVSDASAVIRGTVAY---------------VPQVSWIF-NATVRDNILFGSAFEPARYEK 260
P D+ + G VPQ +F N +V++NILFG A +K
Sbjct: 63 P--DSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQK 120
Query: 261 AID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 319
+ +L LDL E+ +R Q V + R + +S + I D+P ++L
Sbjct: 121 MKQLLAALGCQLDLDSSAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASL 171
Query: 320 DAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
++F R IR L+ G V ++++L + Q+ DRI ++ +G + G DLS +
Sbjct: 172 TPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD 230
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 42/208 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ------ 234
L +NL I G ++++G +G GK++L++ + G P + ++ G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-TSGGVILEGKQITEPGPDRMVV 59
Query: 235 ------VSWIFNATVRDNILFG------SAFEPAR---YEKAIDVTSLQHDLDLLPGGDV 279
+ W+ TVR+NI + R E+ I + L D PG
Sbjct: 60 FQNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG--- 113
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSG 338
+SGG KQRV++ARA+ V + D+P ALDA + + ++ E
Sbjct: 114 --------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 339 KTRVLVTNQLH---FLSQVDRIILVHEG 363
T ++VT+ + LS DR++++ G
Sbjct: 166 VTVLMVTHDVDEALLLS--DRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 48/237 (20%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKFGL--MD 859
++ I P +G +G GKS++L TL R+ E+ G +L+DG D+ G+ +
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 860 LRKILGIIPQSPVLFS---------GTVRFN-------LDPFSEHS--DADLWEALERAH 901
+R+ +G++ Q P F ++ N LD E S A+LW
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-----E 137
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
+KD + + GL S GQ+Q L ++RA+ +L++DE +A+D +
Sbjct: 138 VKDRLDKPGGGL-----------SGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186
Query: 962 IQKTIREEFKSCTMLIIAHRLNT---IIDCDRILLLDS----GRVLEYDTPEELLSN 1011
I+ I E + T++I+ H + + D L++ GR++E D E++ SN
Sbjct: 187 IEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSN 243
|
Length = 258 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 55/198 (27%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI------------ 225
L NINL IP + AI+G +G GK++ I M+ +P V +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 226 ----RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
R + V Q F ++ DN+ +G + +K + + D+ +V +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 282 -IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 339
+ + +++SGGQ+QR+ +ARA+ +N DV + D+P SALD R++ + + +L K
Sbjct: 148 RLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL--KLKEKY 205
Query: 340 TRVLVTNQLHFLSQVDRI 357
T V+VT H + Q R+
Sbjct: 206 TIVIVT---HNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-09
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
PVL +SF + + + G TG+GKSS+L + +E G+I G
Sbjct: 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----------- 488
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERA-HLKDAIRRNSLGLDAQVSEA 920
+ PQ+ + GT++ N+ F D + ++ +A L++ I + E
Sbjct: 489 --ISFSPQTSWIMPGTIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545
Query: 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC------- 973
G S GQR +SL+RA+ + + + +LD +DV T+ +E F+SC
Sbjct: 546 GITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTE-------KEIFESCLCKLMSN 598
Query: 974 -TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
T +++ +L + D+ILLL G Y T E L + FS ++
Sbjct: 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLL 645
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 23/198 (11%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDAS 222
S ++ + ++ + G ++G G GK+++ +LG P V +
Sbjct: 50 SYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA 109
Query: 223 AVIRGTVAYVPQVSWI-FNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
+ R + VPQ + TVR+N+L FG F + E + SL L D
Sbjct: 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA- 168
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GK 339
R ++SGG K+R+++ARA+ ++ + I D+P + LD H +++R +R L+ GK
Sbjct: 169 ----RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGK 223
Query: 340 TRVLVTNQLHFLSQVDRI 357
T +L T HF+ + +R+
Sbjct: 224 TILLTT---HFMEEAERL 238
|
Length = 340 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 64/252 (25%), Positives = 114/252 (45%), Gaps = 44/252 (17%)
Query: 162 AISIRNGYFSW--DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 219
I + + +F + +KA L ++L IP GS A++G G GK++L+ + G P
Sbjct: 4 IIEVEDLHFRYKDGTKA----LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 220 DASAV------------IRGTVAYVPQV--SWIFNATVRDNILFG------SAFE-PARY 258
V +R V V Q +F++TV D++ FG E R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV 119
Query: 259 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
E+A+ + D P ++S GQK+RV++A + + DV + D+P++
Sbjct: 120 EEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY 168
Query: 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377
LD + + R GKT ++ T+ + ++ D++I++ EG V EG L++
Sbjct: 169 LDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD- 227
Query: 378 GELFQKLMENAG 389
+ ++E AG
Sbjct: 228 ----EDIVEQAG 235
|
Length = 274 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 29/217 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
L +S TI + V ++G +G GK+++LN + V RG I ++G I G
Sbjct: 19 SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER-- 76
Query: 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRR---NSLGLDAQV 917
G++ Q+ L V N+ L+ ++ A RR + + +
Sbjct: 77 ---GVVFQNEALLPWLNVIDNVA-----------FGLQLRGIEKAQRREIAHQMLALVGL 122
Query: 918 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 973
A + S G RQ + ++RAL ++L+LDE A+D T +Q+ + + ++
Sbjct: 123 EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 974 --TMLIIAHRLN-TIIDCDRILLLDS--GRVLEYDTP 1005
+L+I H + + R+++L GRV+E
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219
|
Length = 259 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 48/178 (26%), Positives = 72/178 (40%), Gaps = 48/178 (26%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA---MLGELPPVSDASAVI-------- 225
E L NINLDI + AI+G +G GK++ I M+ +P V ++
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 226 --------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 277
R V V Q F ++ DN+ +G + +K +D
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD-------------- 141
Query: 278 DVTEIGERGVNI---------------SGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
++ E RG I SGGQ+QR+ +AR + DV + D+P SALD
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 3e-09
Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 19/222 (8%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFG 856
L G+ ++ ++G +G GKS+ L TL R+ +L G + + G +I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNS 910
++ LRK +G++ Q P F ++ N L + + D EA+E + + AI
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD--EAVETSLKQAAIWDE- 137
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF 970
+ + E+ + S GQ+Q + ++R L + +++LDE T+A+D + I+ + E
Sbjct: 138 --VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 971 KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
T++++ H ++ D+ +G ++E+ +++ N
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 4e-09
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 31/216 (14%)
Query: 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDAS--AVIRGT 228
+L I G + I+G +G GK++++ + + P +SDA V R
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 229 VAYVPQ-VSWIFNATVRDNILFGSAFE--PA--RYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+A V Q + + + TV DN FG A R EKA+D Q L+ E+
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPDEL- 165
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRV 342
SGG +QRV +ARA+ N D+ + D+ SALD + ++ D ++ + +T V
Sbjct: 166 ------SGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 343 LVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+++ L ++ DRI ++ G V + GT +++ NN
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDI--AKFG 856
L ++ +IP ++ I+G +G GKS+ + TL ++++ G + +G +I K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 857 LMDLRKILGII-------PQS--------PVLFSGTVRFNLDPFSEHS--DADLWEALER 899
L++LRK +G++ PQS P + + L E S D LW+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD---- 143
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+KD + +L L S GQ+Q L ++RAL +L++DE T+A+D +
Sbjct: 144 -EVKDRLHTQALSL-----------SGGQQQRLCIARALATNPDVLLMDEPTSALDPVST 191
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
I++ I + + T++I+ H + D+ G ++E + ++ SN
Sbjct: 192 RKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 42/206 (20%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
VL +S + P + ++G GAGKS+++ + +V + G I +G LR
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------KLR- 68
Query: 863 ILGIIPQS----PVLFSGTVRF-NLDPFSEHSDADLWEALER---AHLKDAIRRNSLGLD 914
+G +PQ L RF L P ++ D+ AL+R HL DA
Sbjct: 69 -IGYVPQKLYLDTTLPLTVNRFLRLRPGTK--KEDILPALKRVQAGHLIDA--------P 117
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 970
Q GE QR LL+ RALL R ++LVLDE T VDV LI + +R E
Sbjct: 118 MQKLSGGET----QRVLLA--RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL 170
Query: 971 KSCTMLIIAHRLNTII-DCDRILLLD 995
C +L+++H L+ ++ D +L L+
Sbjct: 171 -DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 61/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 862
G++ + + +G+VG +G GKS+ + +V+ G + G D+ +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 863 ILGIIPQSPVLFSGTVRFNL-----DPFSEHSDADLWEALERAHLKDAIRRNSLG---LD 914
+ +I Q P L S R + +P + L R +KD ++ L L
Sbjct: 99 DIQMIFQDP-LASLNPRMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLLP 152
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTIREEF 970
++ FS GQ Q + ++RAL+ K+++ DE +A+DV A L+Q+ RE
Sbjct: 153 NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMG 212
Query: 971 KSCTMLIIAHRLNTI--IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
S ++ IAH L + I DR+L++ G +E T +E+ N ++K + S
Sbjct: 213 LS--LIFIAHDLAVVKHIS-DRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263
|
Length = 331 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKT-------SLISAMLGEL----PPVSDASAV 224
+ L NI+ + G I G +G GK+ SLIS G L +S
Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77
Query: 225 I-RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL--LPGGDVTE 281
I R V+Y Q +F TV DN++F + D DL+ LP
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERFALP----DT 129
Query: 282 IGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
I + + +SGG+KQR+S+ R + V + D+ SALD V +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNE 178
|
Length = 225 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 152 PNPPLTSGLPAISIRNGYFSW-DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 210
S IS++N S+ +A + N+ DIP G + A++G +G GK++++ +
Sbjct: 3 KTNKKISKNIIISLQNVTISYGTFEAVK----NVFCDIPRGKVTALIGPSGCGKSTVLRS 58
Query: 211 ---MLGELPPVSDASAVI-RGTVAYVPQVSWI---------------FNATVRDNILFGS 251
M + S V+ GT Y P+V + F ++ +NI FG
Sbjct: 59 LNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG- 117
Query: 252 AFEPARYEKAIDVTSLQHDLDLLPGGDVTE----------IGERGVNISGGQKQRVSMAR 301
AR + D+D L + + + E G ++SGGQ+QR+ +AR
Sbjct: 118 ----AR------INGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167
Query: 302 AVYSNSDVFIFDDPLSALD 320
+ +V + D+P SALD
Sbjct: 168 TIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 30/237 (12%)
Query: 169 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----------- 217
Y S + E+ L ++NL++ G + I+G G GK+++ M L P
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 218 VSDASAV--IRGTVAYVPQV--SWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQHD 270
SD + IR V Q + I V +++ FG P + +D
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVD------- 126
Query: 271 LDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
+ L + E + +SGGQKQRV++A + + IFD+P + LD R+V +
Sbjct: 127 -ESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVN 185
Query: 330 RCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
I+ + G T +L+T+ + + DRII++ G V EGT +++ E+ +K+
Sbjct: 186 -TIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEVEMMKKI 241
|
Length = 280 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 27/243 (11%)
Query: 786 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
+I+F++V Y+ P +H ++ IVG+TG+GKS+++ + +++
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT 61
Query: 843 GRILIDGFDIA-----KFGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWE 895
G + +D I K+ + +RK +G++ Q P LF TV + ++ +L E
Sbjct: 62 GTVTVDDITITHKTKDKY-IRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120
Query: 896 ALERAH---LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
AH + R+ + S++ S GQ + +++ L I+VLDE TA
Sbjct: 121 VKNYAHRLLMDLGFSRDVM------SQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174
Query: 953 AVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007
+D ++ L++ +E K T+++++H +N + D ++++ G ++ +P+E
Sbjct: 175 GLDPQSKRQVMRLLKSLQTDENK--TIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232
Query: 1008 LLS 1010
L
Sbjct: 233 LFK 235
|
Length = 286 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--RGTVAYVPQVSWIFNA 241
++ ++P G+ + I G G GK+SL +LGEL PV +G + YVPQ ++
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529
Query: 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN----------ISG 291
T+RD I++ + E + + + L+ LD + +T I ER +SG
Sbjct: 530 TLRDQIIYPDSSEDMK-RRGLSDKDLEQILDNV---QLTHILEREGGWSAVQDWMDVLSG 585
Query: 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
G+KQR++MAR Y I D+ SA+ V ++ C
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 6e-09
Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 74/209 (35%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I + N ++ + L +I+L I G + +VG G GK++L+ + GEL P
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE--- 54
Query: 223 AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
G V +GS + +E+
Sbjct: 55 ----GIVT------------------WGSTVKIGYFEQ---------------------- 70
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV-------FDRCIRGE 335
+SGG+K R+++A+ + N ++ + D+P + LD + + +
Sbjct: 71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-SIEALEEALKEYPGTV--- 120
Query: 336 LSGKTRVLVTNQLHFLSQV-DRIILVHEG 363
+LV++ +FL QV +II + +G
Sbjct: 121 ------ILVSHDRYFLDQVATKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 26/223 (11%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866
+S TI + ++G +G GKS++L L + G+I++DG D++ + ++ + +
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSH--VPPYQRPINM 95
Query: 867 IPQSPVLFSG-TVRFNLDPFSEHSD--------ADLWEALERAHLKDAIRRNSLGLDAQV 917
+ QS LF TV N+ F D + + E L H+++ +R L
Sbjct: 96 MFQSYALFPHMTVEQNI-AFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQL---- 150
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTM 975
S GQRQ ++L+R+L +R K+L+LDE A+D + +Q + + E T
Sbjct: 151 -------SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 976 LIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
+++ H + + RI +++ G+ ++ PEE+ + + +S
Sbjct: 204 VMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 29/228 (12%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+FE V Y L G++F + P + + G +GAGKS++L + I G+I
Sbjct: 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 847 IDGFDIAKFGLMD---LRKILGIIPQS-PVLFSGTVRFNLD-PFSEHSDADLWEALERAH 901
G DI + + LR+ +G+I Q +L TV N+ P + A
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPL----------IIAGAS 110
Query: 902 LKDAIRRNSLGLD-AQVSEAGENFSV----GQRQLLSLSRALLRRSKILVLDEATAAVDV 956
D RR S LD + + +NF + G++Q + ++RA++ + +L+ DE T +D
Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD- 169
Query: 957 RTDALIQKTIR--EEFK--SCTMLIIAHRLNTIIDCD-RILLLDSGRV 999
DAL + +R EEF T+L+ H + I R+L L G +
Sbjct: 170 --DALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHL 215
|
Length = 222 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 8e-09
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 56/269 (20%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGR 844
I+ +++ ++ + VL +SFTI + +GI+GR+GAGKS +++ L + + E GR
Sbjct: 1 IEVKNLTKKF--DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 845 IL---------------------------------IDGFDIAKFGLMDLRKILGIIPQSP 871
I+ +D ++++ +RK + I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 872 VLFSGTVRFNLDPFSEHSDADLWEALERAHL--KDAIRR-----NSLGLDAQVSEAGENF 924
G LD ++ EALE K+A+ R + L +++ +
Sbjct: 119 FALYGDDTV-LD--------NVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDL 169
Query: 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRL 982
S G++Q + L+R L + + + DE T +D +T L+ + E K+ +M++ +H
Sbjct: 170 SGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
Query: 983 NTIID-CDRILLLDSGRVLEYDTPEELLS 1010
I D D+ + L++G + E TP+E+++
Sbjct: 230 EVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 861
L G++ TI + + ++G +G GKS++LN LI G G +++ +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLN-------------LISGLAQPTSGGVILEGK 47
Query: 862 KILGIIPQSPVLFSG-------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
+I P V+F TVR N+ + DL ++ RA +++ I +GL
Sbjct: 48 QITEPGPDRMVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI--ALVGLT 105
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 972
+ S G +Q ++++RAL R K+L+LDE A+D T +Q+ + + E
Sbjct: 106 EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 973 CTMLIIAHRLN-TIIDCDRILLLDS------GRVLEYDTP 1005
T+L++ H ++ ++ DR+++L + G++LE P
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVPFP 205
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (140), Expect = 8e-09
Identities = 59/262 (22%), Positives = 116/262 (44%), Gaps = 28/262 (10%)
Query: 787 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
IKFE V Y+P P L + + ++G TG+GKS++L L +++ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 844 RILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEAL 897
++ + ++ + +RK +G++ Q P LF TV ++ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDV----AFGPQNFGIPK 117
Query: 898 ERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
E+A A + +GL + E S GQ + ++++ L ++LVLDE TA +D
Sbjct: 118 EKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDP 177
Query: 957 RTDALIQKTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN--- 1011
+ + + +S T++++ H ++ + D D + LL+ G ++ TP ++
Sbjct: 178 KARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDF 237
Query: 1012 ---------EGSSFSKMVQSTG 1024
+ + F+ +Q TG
Sbjct: 238 LKAHELGVPKATHFADQLQKTG 259
|
Length = 288 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (139), Expect = 8e-09
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 30/217 (13%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 224
L +I+L++ GS A++G TG GK++L+ + G L P V
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+R V V Q S +F TV ++ FG EKA + + L+++ G E
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAA--EKLEMV--GLADEF 137
Query: 283 GERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR 341
E+ +SGGQ +RV++A + +V + D+P + LD ++ SG+T
Sbjct: 138 WEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTV 197
Query: 342 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 374
VLVT H + V D + L+ +G + GT D+
Sbjct: 198 VLVT---HLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
V L+ IP I+G G GKS++L TL R++ G + +DG I + ++ +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 863 ILGIIPQSPVLFSGTVRFNLDPFSEHSDADL---WEALERAHLKDAIRRNSLGLDAQVSE 919
+G++ Q+ L + L W + + A++ + G+ +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQ--ATGITHLADQ 139
Query: 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTM 975
+ + S GQRQ ++ L + + I++LDE T +D+ L+ + RE K T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE--KGYTL 197
Query: 976 LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ H LN ++ L G+++ P+E+++ E
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 40/241 (16%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 219
+ +R F+ + R NI+L +P G + AI+G +G GKT+L+ + G++ P
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 220 -----DASAVIRGTVAYV-PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTS 266
+ A+ R + V ++S +F + V DN+ + E + + ++
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY-PLREHTQLPAPLLHST 123
Query: 267 LQHDLDLLPGGDVTEIGERGV------NISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+ L+ +G RG +SGG +R ++ARA+ D+ +FD+P D
Sbjct: 124 VMMKLE--------AVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175
Query: 321 AHVGRQVFDRCIRGELS---GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSN 376
+ V + I EL+ G T V+V++ + LS D +V + + G+ + L
Sbjct: 176 P-ITMGVLVKLI-SELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 377 N 377
N
Sbjct: 234 N 234
|
Length = 269 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 67/235 (28%), Positives = 117/235 (49%), Gaps = 24/235 (10%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELER---GRILIDGFDIAKF--- 855
VL+ +S ++ + V ++GR+G GKS TL R+ V LE G + G +AK
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKS----TLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 856 GLMDLRKILGIIPQ---SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 912
R+ + ++ Q S V TVR + H L +A ER + R ++
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-LSLDKA-ERLARASEMLR-AVD 139
Query: 913 LDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA-LIQ--KTIRE 968
LD V + S GQ Q + L+RAL K+L+LDEA + +D+ A +I+ K +++
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199
Query: 969 EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+F + L I H L + C R++++D+G+++E + L+ S +++Q+
Sbjct: 200 QFGT-ACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFS-SPAGRVLQN 252
|
Length = 268 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 42/247 (17%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224
E L ++NL I GS A +G TG GK++++ + G P + V
Sbjct: 19 EGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78
Query: 225 ----IRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 278
IR V V Q S +F TV ++ FG E+A +L + L G
Sbjct: 79 DIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA---EALAREKLALVGIS 135
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
+ + +SGGQ +RV++A + + + D+P + LD +++ + SG
Sbjct: 136 ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSG 195
Query: 339 KTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 394
T VLVT H + V D + ++ +G + G +D +FQ + ++
Sbjct: 196 MTIVLVT---HLMDDVANYADFVYVLEKGKLVLSGKPKD------IFQDV--------DF 238
Query: 395 VEEKEDG 401
+EEK+ G
Sbjct: 239 LEEKQLG 245
|
Length = 280 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 1e-08
Identities = 42/160 (26%), Positives = 85/160 (53%), Gaps = 13/160 (8%)
Query: 225 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE---KAIDVTSLQHDLDLLPGGDVTE 281
+R + V Q +FN ++ +NI FG E A E +A ++ ++ LP T
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFGK--EDATREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGK 339
+G G ++SGGQKQR+++ARA+ + + D+ S+LD++ ++ ++ I + + K
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSN-SEKLIEKTIVDIKDKADK 1410
Query: 340 TRVLVTNQLHFLSQVDRIILVHE-----GMVKEEGTFEDL 374
T + + +++ + + D+I++ + V+ GT E+L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450
|
Length = 1466 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 33/235 (14%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 853
VL G+S D + I+G +G+GKS+ L + + + G I ++G +I
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 854 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERA-HLK 903
K L LR LG++ Q L+S TV N+ H S A EA+ERA
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA---EAIERAEKYL 137
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
+ G+ + + S GQ+Q ++++RAL ++++ DE T+A+D +
Sbjct: 138 AKV-----GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 964 KTIR---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014
K ++ EE + TM+++ H + D ++ L G++ E PE++ N S
Sbjct: 193 KVMQDLAEEGR--TMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 23/195 (11%)
Query: 196 IVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSWIFNA-------TV 243
++G +G GKT+L+ +L S ++ G V VP ++ +F + TV
Sbjct: 1 LLGPSGCGKTTLLR-LLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59
Query: 244 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG-VNISGGQKQRVSMARA 302
+N+ F + K L+ L + E +R +SGGQ+QRV++ARA
Sbjct: 60 EENVAF-----GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARA 114
Query: 303 VYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT-NQLHFLSQVDRIIL 359
+ + + D+PLSALD + Q+ + I+ +L G T V VT +Q ++ DRI +
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAI 173
Query: 360 VHEGMVKEEGTFEDL 374
+ +G + + GT E++
Sbjct: 174 MRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ 234
ER L N+NL+I G +VA+VG +G GKT+L+ +LG RG Y P
Sbjct: 393 VIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA--------QKGRGEEKYRPD 444
Query: 235 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG---GDVTEIGERGVN--- 288
+ V SA P YE ++ L G V + G++
Sbjct: 445 -----SGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAV 499
Query: 289 --------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS- 337
+S GQK+R +A+ + +V + D+ AH+ R R EL+
Sbjct: 500 LYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE----FAAHLDELTAVRVARKISELAR 555
Query: 338 --GKTRVLVTNQLHFLSQV--DRIILVHEGMVKEE 368
G T ++VT++ + + D +ILV G V
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
|
Length = 593 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 30/222 (13%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 228
+++L++ G +V ++G G GKT+L + + G P S + + RG
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-SSGTVIFRGRDITGLPPHRIARLG 80
Query: 229 VAYVPQVSWIF-NATVRDNIL--------FGSAFEPARYEKAIDVTSLQHDLDLLPGGDV 279
+A Q++ +F TV +N+ R K + + +LL +
Sbjct: 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE-ARERARELLEFVGL 139
Query: 280 TE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--EL 336
E N+S GQ++R+ +ARA+ + + + D+P + L+ ++ + IR +
Sbjct: 140 GELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAEL-IRELRDR 198
Query: 337 SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
G T +L+ + + + + DRI++++ G V EGT E++ NN
Sbjct: 199 GGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN 240
|
Length = 250 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 89/374 (23%), Positives = 150/374 (40%), Gaps = 76/374 (20%)
Query: 655 RAYKAYDRMADINGKSMDKNI-RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 713
RA ++ + + + +I R ++ A W I + GL+ ++ + G
Sbjct: 205 RAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL-----GW 259
Query: 714 AENQEAFASTMGLLLSYALNI----TSLLTAV-----LRLASLAENSLNAVERVGNYIEL 764
A+ A+T Y+L + T LL+AV L A +A N LN +
Sbjct: 260 ADTN--VAAT------YSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA------ 305
Query: 765 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVG 821
P +A + P W + ++ +V Y+ + P+ + TI + + ++G
Sbjct: 306 PYKAEF--PRPQAFPDWQT---LELRNVTFAYQDNGFSVGPI----NLTIKRGELLFLIG 356
Query: 822 RTGAGKS--SMLNT-LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 878
G+GKS +ML T L++ G IL+DG + D RK+ + LF
Sbjct: 357 GNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL- 412
Query: 879 RFNLDPFSEHSDADLWEA-LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937
L P + ++ L E LER + + D ++S S GQ++ L+L A
Sbjct: 413 ---LGPEGKPANPALVEKWLERLKMAHKLELE----DGRISNL--KLSKGQKKRLALLLA 463
Query: 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNTIID 987
L IL+LDE A D R EF T+ I+H + I
Sbjct: 464 LAEERDILLLDEWAADQD--------PHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH 515
Query: 988 CDRILLLDSGRVLE 1001
DR+L + +G++ E
Sbjct: 516 ADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 36/268 (13%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAVIRGTVAYVPQ 234
NI+ ++P G + ++G G GKT+ +LG L P S I+ + Y+P+
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPE 79
Query: 235 VSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGG 292
++ TV D + + + E KA LQ L ++ + + +S G
Sbjct: 80 ERGLYPKMTVEDQLKYLA--ELKGMPKAEIQKKLQ---AWLERLEIVGKKTKKIKELSKG 134
Query: 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 352
+Q++ AV ++ I D+P S LD + D + G T + + H +
Sbjct: 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS---HRME 191
Query: 353 QV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN-- 406
V DR++++ +G GT ED+ + GK +E E + N
Sbjct: 192 HVEELCDRLLMLKKGQTVLYGTVEDIRR----------SFGKKRLVIESDLSLEELANIP 241
Query: 407 --KTSKPAANGVDNDLPKEASDTRKTKE 432
+G + + R+ +
Sbjct: 242 GILKITETKDGSWRIQIENETVAREIFQ 269
|
Length = 300 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 37/223 (16%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASA---VIR-----GTV 229
G +AI+G G GK++L + G + P S D S IR
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 230 AYVP--QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287
+ P ++ I + +R N R ++ + + + LLP D
Sbjct: 99 SLNPRLRIGQILDFPLRLNT---DLEPEQRRKQIFETLRM---VGLLP--DHANYYPH-- 148
Query: 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTN 346
++ GQKQRV++ARA+ + I D+ L++LD + Q+ + + E G + + VT
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQ 208
Query: 347 QLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQKLME 386
+ + + D+++++HEG V E G+ D+ S EL ++L+E
Sbjct: 209 HIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIE 251
|
Length = 267 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 40/235 (17%)
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI-- 863
++ + + V ++G GAGK+++ N L + G IL+ G I GL +I
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPG-HQIAR 79
Query: 864 LGIIP--QSPVLF-SGTVRFNL------------------DPFSEHSDADLWEALERAHL 902
+G++ Q LF TV NL P +++ EAL+RA
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAES---EALDRA-- 134
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT---- 958
A +GL + N + GQ++ L ++R ++ + +IL+LDE A ++ +
Sbjct: 135 --ATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKEL 192
Query: 959 DALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
D LI + +R E T+L+I H + ++ DRI +++ G L TPEE+ +N
Sbjct: 193 DELIAE-LRNEHN-VTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (136), Expect = 2e-08
Identities = 46/182 (25%), Positives = 92/182 (50%), Gaps = 20/182 (10%)
Query: 818 GIVGRTGAGKSSMLNTLFRIVELERG-----RILIDGFDIAKFGL--MDLRKILGIIPQS 870
G +G +G GKS++L +L R+ +L +G + G D+ G+ + +R+ +G++ Q
Sbjct: 38 GFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97
Query: 871 PVLFSGTVRFN------LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924
P FS ++ N L+ + + AL+ A L D ++ ++ +G +
Sbjct: 98 PNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSL 150
Query: 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 984
S GQ+Q L ++RA+ ++L+LDE +A+D +++ + E K T+ ++ H +
Sbjct: 151 SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210
Query: 985 II 986
I
Sbjct: 211 AI 212
|
Length = 261 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 73/308 (23%), Positives = 137/308 (44%), Gaps = 42/308 (13%)
Query: 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DG---FDIAKFGLMDL 860
H S I + ++G +G+GKS++L + + + RG +L+ DG D+A L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 861 RKI-----------LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909
R++ ++P V V F L+ A E +R + +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVE--ENVAFGLE-MQGMPKA---ERRKRVDEQLEL--- 151
Query: 910 SLGLDA-QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD--VRT---DALI- 962
+GL + GE S G +Q + L+RA + IL++DE +A+D +RT D L+
Sbjct: 152 -VGLAQWADRKPGE-LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLE 209
Query: 963 -QKTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSK-M 1019
Q +++ T++ ++H L+ + +RI +++ GR++++ TPEE++ N + +
Sbjct: 210 LQSKLKK-----TIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF 264
Query: 1020 VQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAA-AQYALAVSLTSS 1078
V T N R L+ K+ E WL ++ A L V+ ++
Sbjct: 265 VAHTNPLNVLTARDLMRPLTTLEKVDGEWCVSKRYDTWLKTADKQVRRAAAGLPVAAWAA 324
Query: 1079 HNDLQRLE 1086
+++ LE
Sbjct: 325 EQEVESLE 332
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 23/229 (10%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-- 860
VL G+S I + V IVG +G+GKS+++N L + + G + G D+A L
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 861 --RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 917
R+ G I Q L S T N++ + ++ + + L RA + ++R LGL+ +V
Sbjct: 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQ--ELLQR--LGLEDRV 138
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA---LIQKTIREEFKSCT 974
S GQ+Q +S++RAL+ ++++ DE T A+D + I +R+ + T
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD--RGHT 196
Query: 975 MLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023
++I+ H +R++ + G E++ N + V
Sbjct: 197 VIIVTHDPQVAAQAERVIEIRDG---------EIVRNPPAQEKVNVAGG 236
|
Length = 648 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 58/277 (20%), Positives = 105/277 (37%), Gaps = 66/277 (23%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWI 238
L NI+ I G ++ I+G +G GK+ L+ + G + P + +I VA + ++
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP--TSGRIIY-HVALCEKCGYV 72
Query: 239 --------------------------------FNATVRDNILFGSAFEPARYEKAID--- 263
R I+ F + +D
Sbjct: 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132
Query: 264 ----------VTSLQHDLDLLPGGDVTEIGERGVNI----SGGQKQRVSMARAVYSNSDV 309
++ +DL+ ++ ++ R +I SGG+KQRV +AR + +
Sbjct: 133 EALEEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189
Query: 310 FIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKE 367
F+ D+P LD + V + + SG + VL ++ + + D+ I + G +KE
Sbjct: 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKE 249
Query: 368 EGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETV 404
EGT +++ ME E E E GE +
Sbjct: 250 EGTPDEVVA------VFMEGV-SEVEKECEVEVGEPI 279
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGEL----PPVSD 220
E+ L +I + IP + A++G +G GK++L+ G++ + D
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 221 ASA---VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 274
+ A +R + V Q F ++ +N+ +G + +K +D SL+
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
D + + +++SGGQ+QR+ +AR + N +V + D+P SALD
Sbjct: 138 EVKD--RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
|
Length = 253 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 801 PPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858
PV L ++ T+ P + ++G GAGKS+++ L I E +G I I+ + K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 859 DLRKI-LGIIPQS-PVLFSGTVRFNLDPFSEHSDADLW--------EALERAHLKDAIRR 908
++ +GII Q V+ TV NL H + E RA A+
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRA----AMML 130
Query: 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDAL--IQKT 965
+GL + E N S+ +Q+L +++ L+ +K++++DE T+++ + D L I
Sbjct: 131 LRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 966 IREEFKSCTMLIIAHRLNTIID-CDRILLLDSG 997
+R+E + ++ I+H+L I CDR ++ G
Sbjct: 191 LRKEGTA--IVYISHKLAEIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 3e-08
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL------------FRIVELERGRILIDGF 850
+L LS I P ++GR GAGKS++L L R+ G + ++G
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV----TGDVTLNGE 71
Query: 851 DIAKFGLMDLRKILGIIPQS--PVL-FSGTVRFNLDPF--------SEHSDADL-WEALE 898
+A L ++ ++PQ+ P FS L + H D ++ W+AL
Sbjct: 72 PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALA 131
Query: 899 RAHLKDAIRRN----SLGLDAQVSEAGENFSVGQRQLLSL--SRALLRRSKILVLDEATA 952
A + R+ S G A+V A R L L + + L+LDE TA
Sbjct: 132 LAGATALVGRDVTTLSGGELARVQFA--------RVLAQLWPPHDAAQPPRYLLLDEPTA 183
Query: 953 AVDVRTDALIQKTIREEFKSCTM--LIIAHRLNTII-DCDRILLLDSGRVLEYDTPEELL 1009
A+D+ + T+R + + L I H N DRI +L G ++ + P ++L
Sbjct: 184 ALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
Query: 1010 SNE 1012
+
Sbjct: 244 TPA 246
|
Length = 272 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 24/183 (13%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------DASAVIRGTV 229
ER +++ + G + I G G GKT+L+ + G L P + + +R +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 230 AYVPQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+ ++ + T +N+ F F + I + L D+ +
Sbjct: 74 H--QALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW--EALAQVGLAGLEDL-PV 128
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 342
G +S GQ++RV++AR S + ++I D+P +ALD G + + + V
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTALMAAHAAQGGIV 183
Query: 343 LVT 345
L+T
Sbjct: 184 LLT 186
|
Length = 209 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-08
Identities = 56/225 (24%), Positives = 88/225 (39%), Gaps = 33/225 (14%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849
E +R R VL L+ I P D V +VG++GAGK+ TL R++ G G
Sbjct: 385 ESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKT----TLLRMIL---GAQKGRG 437
Query: 850 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP--FSEH-----SDADLWEA-LERAH 901
+ + D K+ L G EH D + L RA
Sbjct: 438 EEKYR---PDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAG 494
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
L DA+ S GQ++ L++ L R +L++DE A +D T
Sbjct: 495 LSDAVLYRR---------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545
Query: 962 IQKTIRE---EFKSCTMLIIAHRLNTI--IDCDRILLLDSGRVLE 1001
+ + I E E T++++ HR + D ++L+ G+V
Sbjct: 546 VARKISELAREAGI-TLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---------- 232
N +LDI G + ++G +G GK++L+ A+ G L PVS S +++ V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNG-LNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 233 -----PQVSWIFNA-------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
+VS +F TV +N+ FG E KA + L+L+ +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFG--LEMQGMPKAERRKRVDEQLELV---GLA 155
Query: 281 EIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR--GELS 337
+ +R +SGG +QRV +ARA + + + + D+P SALD + Q+ D + +L
Sbjct: 156 QWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLK 215
Query: 338 GKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDL 374
KT V V++ L L +RI ++ G + + GT E++
Sbjct: 216 -KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEI 252
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 4e-08
Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 50/247 (20%)
Query: 148 KILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTS 206
K P P G P IS + F + P L N+N I + S +A+VG G GK++
Sbjct: 494 KFEFPTPDDRPGPPIISFSDASFGYPGG---PLLFKNLNFGIDLDSRIAMVGPNGIGKST 550
Query: 207 LISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 265
++ + GEL P S GTV +V +F+ D + S
Sbjct: 551 ILKLISGELQPSS-------GTVFRSAKVRMAVFSQHHVDGLDLSS-------------N 590
Query: 266 SLQHDLDLLPGGDVTE------IGERGVN----------ISGGQKQRVSMARAVYSNSDV 309
L + + PG V E +G GV +SGGQK RV+ A+ + +
Sbjct: 591 PLLYMMRCFPG--VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI 648
Query: 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL-VTNQLHFLS-QVDRIILVHEGMVKE 367
+ D+P + LD + I+G + + VL V++ H +S VD + +V EG V
Sbjct: 649 LLLDEPSNHLDL----DAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704
Query: 368 -EGTFED 373
GTF D
Sbjct: 705 FHGTFHD 711
|
Length = 718 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 5e-08
Identities = 59/229 (25%), Positives = 105/229 (45%), Gaps = 48/229 (20%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASA 223
+ L +++L +P G + A++G G GK++L+ L P S +S
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 224 VIRGTVAYVPQVSWIFNA-TVRDNILFG-----------SAFEPARYEKAIDVTSLQHDL 271
+ +A +PQ TVR+ + +G SA + AR +A++ T
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT------ 126
Query: 272 DLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
+ + +R + ++SGGQ+QR +A + ++ V + D+P + LD + QV
Sbjct: 127 ------RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD--INHQVELM 178
Query: 331 CIRGELS--GKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFED 373
+ EL+ GKT V V LH L+Q D ++++ G V +GT E+
Sbjct: 179 RLMRELNTQGKTVVTV---LHDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
Length = 255 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 35/229 (15%)
Query: 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI 225
R G +K P L N++L I G V ++G +G GK++L +LG P
Sbjct: 13 RTGGLFG-AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ------ 65
Query: 226 RGTVAYVPQVSWIFN-----ATVRD-NILFG---SAFEPARYEKAIDVTSLQHDLDL--- 273
GTV++ Q + + A RD ++F SA P + I L+H L
Sbjct: 66 -GTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDES 124
Query: 274 -----------LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
+ G + + +SGGQ QR+++ARA+ + + D+ +S LD
Sbjct: 125 EQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMV 184
Query: 323 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 368
+ + + R ++ G + +T+ L + R+ ++ +G + EE
Sbjct: 185 LQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 61/279 (21%), Positives = 116/279 (41%), Gaps = 54/279 (19%)
Query: 146 EEKILLPNPPLTSGLPAISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEG 203
++K+ +PNP S + ++N Y +D K E L NI+ + I+G +G G
Sbjct: 7 KKKLKVPNP--LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSG 64
Query: 204 KTSLISAMLGELPP----------------------VSDASAVI------RGTVAYVPQV 235
K++L++ G + + S I R V+ V Q
Sbjct: 65 KSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124
Query: 236 S--WIFNATVRDNILFGS-AFEPARYEKA------IDVTSLQHD-LDLLPGGDVTEIGER 285
+F T+ +I+FG A + E ++ L L+ P G
Sbjct: 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFG-------- 176
Query: 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 345
+SGGQK+RV++A + ++ IFD+P + LD ++ + + + KT ++T
Sbjct: 177 ---LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT 233
Query: 346 NQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 383
+ + H L D +I++ +G + + GT ++ + +
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINS 272
|
Length = 320 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 30/200 (15%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPP--VSDASAVIRGTVAYVP--- 233
L I+LD + A++G +G GK++ + + + +L P + +RG Y P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 234 ------QVSWIFNA------TVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 278
QV +F ++ +N+++G + + +D TSL+ D
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
+ E +++SGGQ+QRV +AR + DV + D+P SALD Q+ + + EL
Sbjct: 141 --HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL--ELRD 196
Query: 339 K-TRVLVTNQLHFLSQVDRI 357
+ T +LVT H + Q RI
Sbjct: 197 QYTIILVT---HSMHQASRI 213
|
Length = 252 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VELER--GRILIDGFDI--AKFG 856
L + IP +G +G GKS+ L L R+ ++ R G+I +DG DI +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 857 LMDLRKILGIIPQSPVLFSGTVRFNL--DPFSE---HSDADLWE----ALERAHLKDAIR 907
+++LR +G++ Q P F ++ N+ P S A+L E +L +A L + ++
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
++ E G S GQ+Q L ++RA+ +++++DE +A+D A +++ I
Sbjct: 155 D-------RLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 968 EEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSN 1011
E ++ T++I+ H + R G ++E E++ +N
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 5e-08
Identities = 60/256 (23%), Positives = 106/256 (41%), Gaps = 31/256 (12%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------------------AMLGEL 215
E L N +L + ++G TG GK+++I A L ++
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 216 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 275
V I G V P+ +F T+ +I FG ++A L LP
Sbjct: 83 KEVKRLRKEI-GLVFQFPEYQ-LFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 276 GGDVTEIGERG-VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR- 333
+ +R +SGGQK+RV++A + + + + D+P LD + R
Sbjct: 141 ----EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 334 GELSGKTRVLVTNQL-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKME 392
+ K ++VT+ + L D +I++HEG V G+ ++ +N EL K+ + K+
Sbjct: 197 NKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQELLTKIEIDPPKLY 256
Query: 393 EYVEE-KEDGETVDNK 407
+ + + K G + NK
Sbjct: 257 QLMYKLKNKGIDLLNK 272
|
Length = 289 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 67/249 (26%), Positives = 104/249 (41%), Gaps = 53/249 (21%)
Query: 752 LNAVERVG--NYIELPSEAPLVIESNRPPPGWPSSGS---------IKFEDVVLRYRPEL 800
L AV ++G ++ P PL I P P ++ ++V R+
Sbjct: 269 LAAVPQLGAMKGLDYPRRFPL-ISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRF---- 323
Query: 801 PPVLHGL--------------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
P+ GL SF + P + + +VG +G+GKS+ L R+VE + G I+
Sbjct: 324 -PLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII 382
Query: 847 IDGFDI---AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAH-- 901
+G I + L LR+ + I Q P +LDP D+ + E L R H
Sbjct: 383 FNGQRIDTLSPGKLQALRRDIQFIFQDPYA-------SLDPRQTVGDS-IMEPL-RVHGL 433
Query: 902 -LKDAIRRNSLGLDAQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAA 953
A L +V E+ FS GQRQ + ++RAL K+++ DEA +A
Sbjct: 434 LPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493
Query: 954 VDVRTDALI 962
+DV I
Sbjct: 494 LDVSIRGQI 502
|
Length = 623 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 37/217 (17%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224
E+ L NI+ ++ GS VA+VG TG GK++L+ L P S +
Sbjct: 19 EKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78
Query: 225 ----IRGTVAYVPQV--SWIFNATVRDNILFG----SAFEPARYEKA---IDVTSLQHDL 271
+R V+ V Q + +F TV ++ FG E EKA + L DL
Sbjct: 79 NLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL 138
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
I + +SGGQ +RV++A + ++ D+P + LD +++
Sbjct: 139 ----------ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLF 188
Query: 332 IRGELSGKTRVLVTNQLHFLSQV--DRIILVHEGMVK 366
+ +G T +LVT+ + +++ D ++L H ++K
Sbjct: 189 KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
Length = 287 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 47/230 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP------- 233
L +++ + G L ++G G GKT+L+ + G+ P + + G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIA 79
Query: 234 --------QVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQH 269
Q +F N TVR+N+ +F S F E R ++ + L
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
+ D L +S GQKQ + + + + + + D+P++ + + +
Sbjct: 140 ERDRLAA-----------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 330 RCIRGELSGKTRVLVTNQ-LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+ L+GK +LV + F+ ++ D++ ++HEG V EG+ +++ N+
Sbjct: 189 --LLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236
|
Length = 249 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-08
Identities = 70/234 (29%), Positives = 104/234 (44%), Gaps = 38/234 (16%)
Query: 151 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 210
LPNP L + GY +R L +I L++ GS + ++G G GK++LI
Sbjct: 308 LPNPLLKME----KVSAGY------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKL 357
Query: 211 MLGELPPVSDASAVIRGT-VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
+ GEL PVS + +G + Y Q F + + P E Q
Sbjct: 358 LAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELE--------QK 409
Query: 270 DLDLLPG----GD-VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
D L G GD VTE R SGG+K R+ +A V+ ++ + D+P + LD +
Sbjct: 410 LRDYLGGFGFQGDKVTEETRR---FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM- 465
Query: 325 RQVFDRCI---RGELSGKTRVLVTNQLHFL-SQVDRIILVHEGMVKE-EGTFED 373
RQ + G L V+V++ H L S D + LVH+G V+ +G ED
Sbjct: 466 RQALTEALIDFEGAL-----VVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLED 514
|
Length = 638 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 25/212 (11%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIR----- 226
E+ L ++L+I G V ++G G GK++L++A+ G+L P S D V +
Sbjct: 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAK 77
Query: 227 --GTVAYV---PQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQHDLDLLP 275
+A V P T+ +N+ A E+ S + L L
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLG 135
Query: 276 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335
G + +R +SGGQ+Q +S+ A + + D+ +ALD V + +
Sbjct: 136 LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIV 195
Query: 336 LSGK-TRVLVTNQL-HFLSQVDRIILVHEGMV 365
K T ++VT+ + L +R+I++H G +
Sbjct: 196 EEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 26/163 (15%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 228
S+ ER ++ + G + + G G GKT+L+ + G L P S + +A+
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 229 VAYVPQVSWIFNA-------TVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGD 278
+ ++ + + +N+ F +A E A+ L DL
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA-- 126
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+S GQ++R+++AR S + ++I D+P +ALD
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK 160
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 35/210 (16%)
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 236
++ +L G + AIVG +G GK++L++ + G P S +I G V P VS
Sbjct: 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVS 73
Query: 237 WIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
+F + TV N+ G +A + E A+ L LPG
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG------ 127
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKT 340
+SGG++QRV++AR + + V + D+P +ALD + ++ D + E + T
Sbjct: 128 -----ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMT 181
Query: 341 RVLVTNQLHFLSQV-DRIILVHEGMVKEEG 369
++VT+Q ++ R++ + G + +G
Sbjct: 182 VLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 173 DSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV 232
+ K + L ++L I G +VAIVG +G GK++L+ + G P S G V +
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-------GEVLFN 65
Query: 233 PQVSWIFNATVRD---NILFGSAFEPARYEKAIDVTSLQH-DLDLLPGG-DVTEIGERGV 287
Q ++ R N G ++ + D T+L++ + LL G V E ER
Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQ--FHHLLPDFTALENVAMPLLIGKKSVKEAKERAY 123
Query: 288 N-----------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
+SGG++QRV++ARA+ + + + D+P LD + + +FD
Sbjct: 124 EMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD- 182
Query: 331 CIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 367
+ EL + ++VT+ L ++DR++ + +G +
Sbjct: 183 -LMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 37/230 (16%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAMLGELP-------------PVSD 220
E+ L +++LDIP ++ A +G +G GK++ ++ M + + D
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90
Query: 221 AS---AVIRGTVAYVPQVSWIFNATVRDNILFGS---AFEPARYE-KAIDVTSLQHDLDL 273
+R V V Q F ++ +N+ +G ++ E I TSL+
Sbjct: 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRK---- 146
Query: 274 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
G E+ +R G +SGGQ+QR+ +ARA+ + +V + D+P SALD +V +
Sbjct: 147 --AGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-E 203
Query: 330 RCIRGELSGK-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
I EL T V+VT+ + ++V R H G + E G E + N
Sbjct: 204 ELID-ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252
|
Length = 267 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 7e-08
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAY 231
++P L I+ +P G L+ + G G GKT+L+ + G L P + ++ + Y
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 232 VPQVSWIF-------NATVRDNILFGSAFEPARYE--KAIDVTSLQHDLDLLPGGDVTEI 282
Q+ ++ T+R+N L+ F P + + SL+H +D P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID-YPCG----- 126
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+S GQK++V++ R S + +++ D+PL ALD
Sbjct: 127 -----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 8e-08
Identities = 45/183 (24%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDI--AKFGLMDLRKI 863
IP + +G +G GKS++L R+ +L GR+L +I ++ + LR+
Sbjct: 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQ 102
Query: 864 LGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSE 919
+G++ Q P F ++ N+ P + +L E +E D++RR ++ + ++ E
Sbjct: 103 VGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVE-----DSLRRAAIWEEVKDKLKE 157
Query: 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA 979
G S GQ+Q L ++RA+ + +L++DE +A+D + +++ E + T++++
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 980 HRL 982
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 8e-08
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDL 860
L G+SFT+ + +VG +G GKS++ L I G + G D+ K L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 861 RKILGIIPQSPVLFSG-----TVRFNL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
R+ + I+ Q+P + V L +P ++ A ER R +L +
Sbjct: 91 RQKIQIVFQNP--YGSLNPRKKVGQILEEPLLINTSLS---AAER-------REKALAMM 138
Query: 915 AQVSEAGEN-------FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
A+V E+ FS GQRQ ++++RAL+ ++V DE +A+DV
Sbjct: 139 AKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-07
Identities = 42/188 (22%), Positives = 80/188 (42%), Gaps = 12/188 (6%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG--TVAYVP 233
+ L +N ++ G + I G +G GKTSL+ A L L P + + ++P
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRA-LAGLWPWGSGRISMPADSALLFLP 462
Query: 234 QVSWIFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 290
Q ++ T+R+ + + +A F A + L + L E +S
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLS 517
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 350
GG++QR++ AR + D+ SALD +++ + ++ EL T + V ++
Sbjct: 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLY-QLLKEELPDATVISVGHRPTL 576
Query: 351 LSQVDRII 358
+ R +
Sbjct: 577 WNFHSRQL 584
|
Length = 604 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Query: 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVT 345
+SGGQKQRV++ARA+ SN V + D+ SALD R + + + I EL G T VL+T
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLIT 198
Query: 346 NQLHFLSQV-DRIILVHEGMVKEEGTFED 373
+++ + ++ DR+ ++ G + E+GT +
Sbjct: 199 HEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 48/227 (21%)
Query: 180 TLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---------- 228
TLL+ ++L P G + ++G G GK++L+ MLG P S+ ++
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 229 ---VAYVPQ-VSWIFNATVRDNILFG-----------SAFEPARYEKAIDVTSLQHDLDL 273
VAY+PQ + TVR+ + G A + + E+AI + L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL------ 137
Query: 274 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALD-AHVGRQVFDRC 331
+ R V+ +SGG++QR +A V +S + D+P SALD AH QV
Sbjct: 138 ------KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH---QVDVLA 188
Query: 332 IRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 374
+ LS + + V LH ++ D ++ + G + +GT +L
Sbjct: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
Length = 265 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 1e-07
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 54/199 (27%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 229
+++ ++ G +V I G G G+T L A+ G PP S IR +
Sbjct: 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77
Query: 230 AYVP----QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
AYVP + + + +V +NI S LL
Sbjct: 78 AYVPEDRKREGLVLDLSVAENIALSS---------------------LL----------- 105
Query: 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVT 345
SGG +Q+V +AR + + V I D+P +D +++ +GK +L++
Sbjct: 106 ----SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
Query: 346 NQLHFLSQV-DRIILVHEG 363
++L L + DRI++++EG
Sbjct: 162 SELDELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 26/217 (11%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP---VSDASAVIRGTVAYVPQVSWIF 239
++NL + G ++A+VG +G GK+ A+LG LPP + ++ G +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 240 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------- 289
AT+ N +AF P AI+ L + E E V +
Sbjct: 64 IATIMQNPR--TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEA-VGLPDPEEVLK 120
Query: 290 ------SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 341
SGG QRV +A A+ I D+P + LD +V R +R +L G
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR-QLFGTGI 179
Query: 342 VLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+L+T+ L ++++ D + ++ +G + E GT +++ N
Sbjct: 180 LLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 1e-07
Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 20/244 (8%)
Query: 784 SGSIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840
S I ++V Y + P L+ S T + ++G TG+GKS+M+ ++
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 841 ERGRILIDGFDIAKF-----GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADL 893
E G+ ++ + I + LRK +G++ Q P LF T+ ++ + +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 894 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953
EA ++ + + ++ L D V + S GQ++ ++L+ + LVLDE T
Sbjct: 124 QEAYKK--VPELLKLVQLPED-YVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 954 VDVRTDA----LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+D + + L ++ +E K M + H ++ ++ D ++++ G+V+ +P E+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIM--VTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 1009 LSNE 1012
SN+
Sbjct: 239 FSNQ 242
|
Length = 289 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------- 225
L N+N I G +V ++G +G GK++L+S M+G L + +
Sbjct: 14 GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73
Query: 226 --RGTVAYVPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLP 275
+ + + Q + +F + +V N+LF G+A A A++ + L P
Sbjct: 74 AAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANA-ALERSGLDGAFHQDP 132
Query: 276 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335
+SGGQ+ RV++ RA+ + + D+P S LD + R F + + E
Sbjct: 133 A-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLDVAL-RDQFRQWVFSE 180
Query: 336 L--SGKTRVLVTNQL 348
+ +G V VT+ L
Sbjct: 181 VRAAGIPTVQVTHDL 195
|
Length = 213 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 35/188 (18%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVP 233
S A L N+++ IP+ LV + G +G GK++L++ L
Sbjct: 4 SGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA------------------- 44
Query: 234 QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293
+ I F F K I + LQ +D+ G +G++ +SGG+
Sbjct: 45 -------SGKARLISFLPKFS---RNKLIFIDQLQFLIDV--GLGYLTLGQKLSTLSGGE 92
Query: 294 KQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHF 350
QRV +A ++S +FI D+P + L Q+ + I+G + G T +L+ + L
Sbjct: 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLIDLGNTVILIEHNLDV 151
Query: 351 LSQVDRII 358
LS D II
Sbjct: 152 LSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 59/224 (26%)
Query: 778 PPGWPSSGS--IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835
PPG P G I+ E++ + +L ++ LSF +PP VG++G GAGKS TLF
Sbjct: 313 PPG-PRLGDKVIEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKS----TLF 365
Query: 836 RIV----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP----FSE 887
R++ + + G I I + K +D QS R LDP + E
Sbjct: 366 RMITGQEQPDSGTIKIG--ETVKLAYVD---------QS--------RDALDPNKTVWEE 406
Query: 888 HSD-ADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941
S D+ E RA++ R N G D Q + G+ S G+R + L++ L
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVG---RFNFKGSDQQ-KKVGQ-LSGGERNRVHLAKTLKSG 461
Query: 942 SKILVLDEATAAVDVRT-----DALIQKTIREEFKSCTMLIIAH 980
+L+LDE T +DV T +AL EF C + +I+H
Sbjct: 462 GNVLLLDEPTNDLDVETLRALEEAL------LEFAGCAV-VISH 498
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 62/261 (23%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----------DASAV----IR 226
L IN++I G + AI+GG G GK++L + G L P S D S +R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 227 GTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
+V V Q + +F+A+V ++ FG +L+ LP +V + +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG-------------AVNLK-----LPEDEVRKRVD 123
Query: 285 RGVNISG--------------GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
+ +G GQK+RV++A + V + D+P + LD +G +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP-MGVSEIMK 182
Query: 331 CIRGELS--GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGELFQKL--- 384
+ G T ++ T+ + + D + ++ EG V +G +++ E+ +K+
Sbjct: 183 LLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLR 242
Query: 385 MENAGKMEEYVEEKEDGETVD 405
+ G + E ++EK DG D
Sbjct: 243 LPRIGHLMEILKEK-DGFVFD 262
|
Length = 283 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 171 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIR 226
SW S R + +++ P GSL ++G G GK++L+ + G L P V A +
Sbjct: 8 SW-SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH 66
Query: 227 G--------TVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---- 273
G VA V Q TVRD + G P R A D HD +
Sbjct: 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRI--PHRSLWAGDSP---HDAAVVDRA 121
Query: 274 LPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
L +++ + +R ++ +SGG++QRV +ARA+ + + D+P + LD V Q+ +
Sbjct: 122 LARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD--VRAQLETLAL 179
Query: 333 RGELSGKTRVLVTNQLHFL----SQVDRIILVHEGMVKEEGT 370
EL+ T V V LH L S D ++++ G V G
Sbjct: 180 VRELAA-TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--VAYVPQ---VSWIF 239
+L + G VAI+G +G GK++L++ + G L P S S + G P VS +F
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS-GSLTLNGQDHTTTPPSRRPVSMLF 77
Query: 240 -------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285
+ TV NI G +A + + ++ L LPG
Sbjct: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG--------- 128
Query: 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+SGGQ+QRV++AR + + + D+P SALD
Sbjct: 129 --QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--------------- 218
E+ L +INL I + A++G +G GK++ + + + +L
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 219 -SDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID--------VTSLQ 268
D V +R V V Q F ++ DN+ +G + +K +D +L
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW 134
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
++ ++ + + +SGGQ+QR+ +AR + DV + D+P SALD ++
Sbjct: 135 DEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIE 187
Query: 329 DRCIRGELSGK-TRVLVTNQLHFLSQVDRI 357
D + EL + T V+VT H + Q R+
Sbjct: 188 DLMV--ELKKEYTIVIVT---HNMQQASRV 212
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 55/236 (23%), Positives = 105/236 (44%), Gaps = 43/236 (18%)
Query: 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI------------SAML 212
IRN F W + L ++NLDI + A +G +G GK++ + ++
Sbjct: 83 IRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHE 141
Query: 213 GELPPVSD-------ASAVIRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPAR 257
GE+ + +S +R + V Q F ++ DN+ +G
Sbjct: 142 GEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKI 201
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
EK++ +L ++ ++ + G +SGGQ+QR+ +ARA+ +V + D+P S
Sbjct: 202 VEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254
Query: 318 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI----ILVHEGMVKEEG 369
ALD ++ + + EL K +++ H ++Q RI + ++G ++E G
Sbjct: 255 ALDPIATAKIEELIL--ELKKKYSIIIVT--HSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 39/181 (21%)
Query: 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV------ 218
N YF + L N+NLDIP S+ A++G +G GK++ I + + +L P
Sbjct: 10 NTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64
Query: 219 ---------SDASAVI--RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYE 259
A V+ R V V Q F ++ DN+ +G F R E
Sbjct: 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVE 124
Query: 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL 319
+++ +L ++ ++ + + +SGGQ+QR+ +AR + + +V + D+P SAL
Sbjct: 125 ESLKAAALWDEVK-------DKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSAL 177
Query: 320 D 320
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 31/184 (16%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
P I IR F + + L NIN+D P + AI+G +G GK++L+ A+ VS
Sbjct: 3 PKIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG 59
Query: 221 AS-------------------AVIRGTVAYVPQVSWIFNATVRDNILFGSAF----EPAR 257
A +R V V Q F ++ DN+ FG +R
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTE-IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316
++ ++ + Q L +V + + + G+ +SGGQ+QR+ +AR + +V + D+P
Sbjct: 120 LDEVVEKSLRQAAL----WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPC 175
Query: 317 SALD 320
SALD
Sbjct: 176 SALD 179
|
Length = 251 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 2e-07
Identities = 62/244 (25%), Positives = 118/244 (48%), Gaps = 31/244 (12%)
Query: 151 LPNPPLTSG---LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 207
+P P + P + IRN S+D + + +++L I G + A++G +G GK++L
Sbjct: 5 IPRPQAKTRKALTPLLEIRNLTKSFDGQ---HAVDDVSLTIYKGEIFALLGASGCGKSTL 61
Query: 208 ISAMLGELPPVSDASAVIRGTVAYVPQ----VSWIFNA-------TVRDNILFGSAFEPA 256
+ + G P + + +++VP ++ +F + TV NI FG +
Sbjct: 62 LRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG--LKQD 119
Query: 257 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDP 315
+ KA + + L L+ + E +R + +SGGQ+QRV++AR++ + + D+P
Sbjct: 120 KLPKAEIASRVNEMLGLV---HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
Query: 316 LSALDA----HVGRQVFDRCIRGELSGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGT 370
+ ALD + +V D E G T V+VT +Q ++ RI +++ G + G
Sbjct: 177 MGALDKKLRDRMQLEVVDIL---ERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233
Query: 371 FEDL 374
E++
Sbjct: 234 PEEI 237
|
Length = 377 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 54/238 (22%), Positives = 108/238 (45%), Gaps = 29/238 (12%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RK 862
+SF + P + +GIVG +G+GKS++L L + + G A+ L L R+
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 863 IL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS 910
L G + Q+P V + L ++ RA +D +
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RATAQDWLEEVE 136
Query: 911 LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKTI 966
+ ++ + FS G +Q L ++R L+ R +++ +DE T +DV A L++ +
Sbjct: 137 IDPT-RIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 967 REEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023
R+ ++I+ H L + R+L++ GRV+E +++L + +++++ S+
Sbjct: 196 RD--LGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 50/204 (24%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGFDIAKFGLMDL- 860
L +S + + V + G GAGKS+++ L + G I+ +G ++ + D
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 861 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQV 917
R + II Q L +V N+ +E + + ++A+ +L+ L LD
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAM---YLRAQKLLAQLKLDINP 137
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTM 975
+ N +GQ+QL+ +++AL +++++L+LDE TA++ ++ + I + K+
Sbjct: 138 ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHGIAC 196
Query: 976 LIIAHRLNTIID-CDRILLLDSGR 998
+ I+H+LN + D I ++ GR
Sbjct: 197 IYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRD 245
I ++ I+G G GKT+ I + G L P + TV+Y PQ + + TVRD
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 246 NILFGSAFEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAV 303
+ D T ++ + +I +R V +SGG+ QRV++A +
Sbjct: 81 LL----------SSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACL 130
Query: 304 YSNSDVFIFDDPLSALD 320
++D+++ D+P + LD
Sbjct: 131 SKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 42/236 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 858
VL+ +S IP V ++G +G+GK+ TL RI+ LE G I G D+++
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKT----TLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 859 DLRKILGIIPQSPVLF-----SGTVRFNLD--PFSEHSDAD--------LWEALERAHLK 903
D RK+ G + Q LF + F L P E +A L E ++ AHL
Sbjct: 73 D-RKV-GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
D AQ+S GQ+Q ++L+RAL +IL+LDE A+D + ++
Sbjct: 131 DR-------YPAQLSG-------GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELR 176
Query: 964 KTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
+ +R EE K ++ + + + DR++++ G + + TP+++ + F
Sbjct: 177 RWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 3e-07
Identities = 43/162 (26%), Positives = 74/162 (45%), Gaps = 19/162 (11%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMD 859
+L ++FTI + V ++G +G GKS++L+ + + + G + ++ + L
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM--LPA 74
Query: 860 LRKILGIIPQSPVLFS-----GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
++ +GI+ Q +LF + F L L R A+ R GLD
Sbjct: 75 AQRQIGILFQDALLFPHLSVGQNLLFALPA-------TLKGNARRNAANAALER--SGLD 125
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
+ S GQR ++L RALL + K L+LDE + +DV
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 4e-07
Identities = 84/312 (26%), Positives = 135/312 (43%), Gaps = 83/312 (26%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LM 858
+L +S + P K+G++G GAGKS TL RI + G D G
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFNGEARPA 65
Query: 859 DLRKILGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--E 898
K+ G +PQ P L + TVR N LD F+E S DAD+ +AL E
Sbjct: 66 PGIKV-GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM-DALLAE 123
Query: 899 RAHLKDAIR-RNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKIL 945
+A L++ I ++ LD ++ A + S G+R+ ++L R LL + +L
Sbjct: 124 QAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDML 183
Query: 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDS 996
+LDE T +D + A +++ ++ E+ T++ + H DR IL LD
Sbjct: 184 LLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH--------DRYFLDNVAGWILELDR 233
Query: 997 GRVLEY--------DTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLR--- 1045
GR + + + E+ L E S Q +++RS +A++K R
Sbjct: 234 GRGIPWEGNYSSWLEQKEKRLEQEEKEESAR-QKALKRELEWVRSSPKARQAKSKARLAR 292
Query: 1046 -EENKQIDGQRR 1056
EE + Q+R
Sbjct: 293 YEELLSQEFQKR 304
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 40/167 (23%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPV--SDASAVIRGTVAYVPQVSWI 238
N+ LDIP + A +G +G GK++++ L +L P + G Y P V +
Sbjct: 28 NVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87
Query: 239 ---------------FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE-- 281
F ++ DNI +G AR + + D+D L + +
Sbjct: 88 EVRRRIGMVFQKPNPFPKSIYDNIAYG-----AR------INGYKGDMDELVERSLRQAA 136
Query: 282 --------IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+ + G+++SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 137 LWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L N++ I G ++AIVG +G GK++L+ +LG L + + G + ++S
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQP--MSKLSSAAK 81
Query: 241 ATVRDNILFGSAFEPARYEKAIDVTSLQH-DLDLLPGGD------------VTEIG---- 283
A +R+ L F + D T+L++ + LL G + +G
Sbjct: 82 AELRNQKL---GFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 284 --ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS---G 338
R +SGG++QRV++ARA+ +N + + D+P LDA +F + GEL+ G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ--LLGELNRLQG 196
Query: 339 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370
++VT+ L ++ R + + +G + E +
Sbjct: 197 TAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228
|
Length = 233 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 40/170 (23%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIRGTV------AYV 232
L INLDI + A++G +G GK++ + + + +L P S I G V Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP----SVKIEGEVLLDGQDIYK 74
Query: 233 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 274
+ F ++ DN+ +G + +K +D SL+
Sbjct: 75 SDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG----- 129
Query: 275 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
E+ +R + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 130 -AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 64/232 (27%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--------- 853
VL G+S D + I+G +G+GKS+ L + + + G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 854 ----KFGLMDLRKILGIIPQSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKDAIR 907
K L LR L ++ Q L+S TV N ++ + EA ERA
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA----VKY 135
Query: 908 RNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 963
+G+D + + S GQ+Q +S++RAL ++L+ DE T+A+D V I
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 964 KTIREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGS 1014
+ + EE K TM+++ H + ++ L G++ E PE+L N S
Sbjct: 196 QQLAEEGK--TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 34/167 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVPQVS 236
L +I+L+ + A++G +G GK++ + + + +L P + I G Y P V
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 237 WI---------------FNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 273
+ F ++ +N+ +G A+ R E+++ +L ++
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK- 140
Query: 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+ E + +SGGQ+QR+ +ARA+ +V + D+P SALD
Sbjct: 141 ------DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-07
Identities = 57/212 (26%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---- 859
L G + + P + +VG GAGKS+M+ L I + G IL G ++ G
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 860 ----LRKILGIIPQSPV---LFSG---TVRFNLDPFSE-HSDADLWEALERAHLKDAIRR 908
+ + L +IPQ + +F G RF + + +++AD + L R +L+ + +
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEAD--KLLARLNLRFSSDK 137
Query: 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV-DVRTDALIQKTIR 967
V E S+G++Q++ +++ L SK++++DE T A+ D T++L + IR
Sbjct: 138 -------LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF-RVIR 185
Query: 968 E-EFKSCTMLIIAHRLNTIID-CDRILLLDSG 997
E + + ++ I+HRL I + CD + + G
Sbjct: 186 ELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 58/234 (24%), Positives = 105/234 (44%), Gaps = 25/234 (10%)
Query: 797 RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF------ 850
+ ++ V + LSF++ + + IVG +G+GKS L R++E G + D
Sbjct: 26 QQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRS 84
Query: 851 ----DIAKFGLMDLRKILG----IIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALE 898
++++ +R + G +I Q P+ V + +E H A EA+
Sbjct: 85 RQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV 144
Query: 899 RA-HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957
A + D +R +S S G RQ + ++ AL R +L+ DE T A+DV
Sbjct: 145 EAKRMLDQVRIPEA--QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 958 TDALIQKTIREEFKSCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
A I + I+ K +M + I H + + + DR+L++ G +E + E++
Sbjct: 203 IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPP 217
E+ L N+++ IP S+ A++G +G GK++ I ++ GE
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 218 VSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPG 276
D V +R V V Q F ++ DN+ +G A +K +D L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGAN-KKDLDGVVENA---LRSA 138
Query: 277 GDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
E +R +++SGGQ+QR+ +AR + + +FD+P SALD
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
|
Length = 258 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 7e-07
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 9/203 (4%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERGRILIDGFDIAKFGLMDL- 860
L G+ + P + VG+ G GAGKS+++ L + G I G + + D
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 861 RKILGIIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQV 917
R + II Q L +V N+ +E + K+ +R L D
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTML 976
G+ + GQ+QL+ +++AL +++++L+LDE ++++ + ++ IR+ + +
Sbjct: 137 RPVGD-YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 977 IIAHRLNTIID-CDRILLLDSGR 998
I+H+LN + CD I ++ G+
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 33/205 (16%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS------------------AMLGELPPV 218
E L +INL IP + A++G +G GK++L+ M GE
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 219 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGD 278
+ A +R V V Q F ++ +N+ +G + + +K +D + L G
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERS----LRGAA 130
Query: 279 V-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
+ E+ +R +SGGQ+QR+ +AR + DV + D+P SALD ++ + +
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE--LM 188
Query: 334 GELSGK-TRVLVTNQLHFLSQVDRI 357
EL T V+VT H + Q RI
Sbjct: 189 EELKKNYTIVIVT---HSMQQARRI 210
|
Length = 249 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 46/218 (21%), Positives = 104/218 (47%), Gaps = 40/218 (18%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----E 841
++ E++ + Y L + + IP + +G +G GKS++L R+ +L
Sbjct: 11 LRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68
Query: 842 RGRILIDGFDIAKFGL--MDLRKILGIIPQSPVLFSGTV-------------RFNLDPFS 886
G++ G ++ + +++R+ +G++ Q P F ++ + ++D
Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELV 128
Query: 887 EHS--DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944
E S A LW+ +KD ++++ L L S GQ+Q L ++RA+ + ++
Sbjct: 129 ERSLRQAALWD-----EVKDKLKQSGLSL-----------SGGQQQRLCIARAIAVQPEV 172
Query: 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 982
+++DE +A+D + I++ + E + T++I+ H +
Sbjct: 173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 16/178 (8%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL- 860
PVL +S ++ + V + G +G+GKS++L +L+ + G+IL+ +DL
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEG----EWVDLV 80
Query: 861 ----RKILGIIPQSPVLFSGTVRF-----NLDPFSEHSDADLWEALERAHLKDAIRRNSL 911
R++L + + S +R LD +E A E A K A L
Sbjct: 81 TAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR-EVARAKAADLLTRL 139
Query: 912 GLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968
L ++ S A FS G++Q ++++R + IL+LDE TA++D A++ + IRE
Sbjct: 140 NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 33/108 (30%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 347
SGGQ+QR+++ARA+ ++ + D+P SALD V QV D R ++ + G + + +++
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKH-GLSYLFISHD 486
Query: 348 LHFLSQV-DRIILVHEGMVKEEGTFEDLSNN--GELFQKLMENAGKME 392
L + + R+I++ +G + E+G E + N E + L+ A +E
Sbjct: 487 LAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLAAAFDIE 534
|
Length = 534 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 59/239 (24%), Positives = 106/239 (44%), Gaps = 30/239 (12%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTS----------LISAMLGELPPVSDASAV------ 224
L NIN+ I S+ A++G +G GK++ L+ + E + + +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
+R + V Q F ++ DNI +G + +K +D Q +V +
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 282 -IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340
+ +++SGGQ+QR+ +AR + +V + D+P SALD ++ + I + S T
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES-YT 201
Query: 341 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEK 398
++VT+ + ++ DR G ++EE S+ ELF K EEY+ K
Sbjct: 202 IIIVTHNMQQAGRISDRTAFFLNGCIEEE------SSTDELF--FNPKNTKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 9e-07
Identities = 54/241 (22%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI----------VEL------ERGRILI 847
LH + I + V ++G +G+GKS++L L + +EL GR+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 848 D--------GFDIAKFGLMDLRKIL-----GIIPQSPVLFSGTVRFNLDPFSEHSDADLW 894
D G+ +F L++ +L G + +P R F+
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW-----RTCFSWFTREQKQRAL 134
Query: 895 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 954
+AL R +G+ + S GQ+Q ++++RAL++++K+++ DE A++
Sbjct: 135 QALTR-----------VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183
Query: 955 DVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
D + ++ T+R+ + T+++ H+++ + C+RI+ L G V YD + N
Sbjct: 184 DPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQQFDN 242
Query: 1012 E 1012
E
Sbjct: 243 E 243
|
Length = 262 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
I+ E++ Y +L +S TI P D++G+VGR GAGKS++L + +E + G +
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDL----- 860
+SF++ + +G+ G GAG++ ++ LF + G + I+G +
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338
Query: 861 ------RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
RK GI+P V + T+ L F D A E + AI+R +
Sbjct: 339 AMVPEDRKRHGIVPILGVGKNITLS-VLKSFCFKMRID--AAAELQIIGSAIQRLKVKTA 395
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSC 973
+ G S G +Q L++ LL ++L+LDE T VDV I K I + +
Sbjct: 396 SPFLPIG-RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 974 TMLIIAHRLNTIID-CDRILLLDSGRV 999
+++++ L ++ DR+L++ G++
Sbjct: 455 AIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KILG 865
LSFT+ + I+G G+GKS++ L ++E G +LID + FG R + +
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQRIR 90
Query: 866 IIPQSPV-----------LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
+I Q P + +R N D E + + E L + L L
Sbjct: 91 MIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGL----------LP 140
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKS 972
S + GQ+Q L L+RAL+ R K+++ DEA A++D+ + + + E E +
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 973 CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
+ + + L + D++L++ G V+E + ++L+
Sbjct: 201 ISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 57/209 (27%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IR 226
ER L + G ++A++G +G GK++L++A+ G + + + I
Sbjct: 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQIL 139
Query: 227 GTVAYVPQVSWIF-NATVRDNILFGSAFE-P---ARYEKAIDVTSLQHDLDLLPGGDVTE 281
+V Q ++ + TVR+ ++F S P + EK + S+ +L L + T
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TI 198
Query: 282 IGE---RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
IG RG ISGG+++RVS+A + N + I D+P S LDA ++ G L+
Sbjct: 199 IGNSFIRG--ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTL--GSLAQ 254
Query: 339 KTRVLVTNQLHFLSQV----DRIILVHEG 363
K + +VT+ S+V D ++++ EG
Sbjct: 255 KGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 38/237 (16%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYV---- 232
++ L +I + IP S+ I+G +G GK++L+ +L L + D+ + G V Y
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLK-VLNRLIEIYDSKIKVDGKVLYFGKDI 80
Query: 233 ---------PQVSWIFNA-------TVRDNILF---GSAFEPARYEKAIDVTSLQHDLDL 273
+V +F ++ DNI + + R K I L+
Sbjct: 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKV--- 137
Query: 274 LPGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
G E+ +R +SGGQ+QR+++ARA+ V + D+P S +D V Q +
Sbjct: 138 ---GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI-VNSQAIE 193
Query: 330 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL--SNNGELFQK 383
+ I + V+V++ +++V D + ++ G + E G+ ++ S EL +K
Sbjct: 194 KLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
Length = 257 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 36/224 (16%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------ 225
R + +++L + G +V ++G G GKT+ ++G +P DA +I
Sbjct: 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLH 73
Query: 226 ---RGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHD---LDLLPGGD 278
R + Y+PQ + IF +V DN++ A + D+++ Q + +L+
Sbjct: 74 ARARRGIGYLPQEASIFRRLSVYDNLM-------AVLQIRDDLSAEQREDRANELMEEFH 126
Query: 279 VTEIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGE 335
+ + + G ++SGG+++RV +ARA+ +N + D+P + +D V D R I
Sbjct: 127 IEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDP---ISVIDIKRIIEHL 183
Query: 336 LSGKTRVLVT--NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
VL+T N L+ +R +V +G + GT ++ +
Sbjct: 184 RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 63/286 (22%), Positives = 123/286 (43%), Gaps = 55/286 (19%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF 239
G +V +G G GK++ + + G LPP S + V ++ + Y+P+ + ++
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLY 87
Query: 240 -NATVRDNILFGSAF-------EPARYEKAIDVTSL---QHDLDLLPGGDVTEIGERGVN 288
+ VR+ + F + R E+ I++ L QH +IG+
Sbjct: 88 LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH----------KKIGQ---- 133
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 346
+S G +QRV +A+A+ + V I D+P + LD + Q+ + I+ KT +L T
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN---QLVEIRNVIKNIGKDKTIILST- 189
Query: 347 QLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG- 401
H + +V DR+I++++G + + ++LS + +E +++ + E +
Sbjct: 190 --HIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQIDLQLFETLEEI 247
Query: 402 ----ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 443
T N ND E + K K + ++Q E+
Sbjct: 248 SSVKNTGGNTWKLTFET--PNDTRPEIFKLAQQKGLKLISLQQNEK 291
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 57/213 (26%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG---FDIAK--FGLMDLRKIL 864
T+P I GR+GAGK+S++N + + ++GRI+++G FD K + R+I
Sbjct: 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI- 78
Query: 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923
G + Q LF VR NL S ++ + LG++ + +
Sbjct: 79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVAL----------LGIEPLLDRYPGS 128
Query: 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ--KTIREEFKSCTMLIIAH 980
S G++Q +++ RALL ++L++DE A++D+ R L+ + + E +L ++H
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREIN-IPILYVSH 187
Query: 981 RLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
L+ I+ DR+++L+ G+V + EE+ ++
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220
|
Length = 352 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 47/208 (22%), Positives = 100/208 (48%), Gaps = 38/208 (18%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGEL-PPVSDASAVI-RGTVAYV 232
++ L +++LD + A++G +G GK++L+ ++ + +L P V+ +++ G Y
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 233 PQVSWI---------------FNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLL 274
P+ + F ++ +N+++G + + ++ +D SL+
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLK------ 130
Query: 275 PGGDV-TEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
G + E+ +R + +SGGQ+QRV +AR + ++ + + D+P SALD ++ +
Sbjct: 131 -GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI-E 188
Query: 330 RCIRGELSGKTRVLVTNQLHFLSQVDRI 357
+ G T +LVT + Q RI
Sbjct: 189 ETLLGLKDDYTMLLVT---RSMQQASRI 213
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 32/205 (15%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS--DASAVIRGTVAY 231
++ + N+NLD+ G++ A++G +G GKT+ + A+ + +L P + ++ G Y
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 232 VP---------QVSWIFNA-------TVRDNILFGSAFEPARYEKAI-DVTSLQHDLDLL 274
P +V +F +V DN++ G R + +V + L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVA----ERSLR 130
Query: 275 PGGDVTEIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
E+ +R +SGGQ+QR+ +ARA+ ++ + D+P SALD ++ D
Sbjct: 131 GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIED- 189
Query: 331 CIRGELSGKTR-VLVTNQLHFLSQV 354
+ +L T ++VT+ +H ++V
Sbjct: 190 -LMTDLKKVTTIIIVTHNMHQAARV 213
|
Length = 252 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 31/164 (18%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVS------------------DAS 222
++NL+I S+ A +G +G GK++++ + + E+ P + D
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 223 AVIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDV-T 280
AV R T+ V Q F ++RDN++ G R +K +D + L G ++
Sbjct: 82 AV-RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKS----LRGANLWN 136
Query: 281 EIGER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
E+ +R G +SGGQ+QR+ +ARA+ DV + D+P SALD
Sbjct: 137 EVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 44/221 (19%)
Query: 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 869
TI P KVG+VG+ G GKS++L L + I DG + ++ + +
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALL-------KNEISADG---GSYTFPGNWQLAWVNQE 72
Query: 870 SPVLFSGTVRFNLDPFSEHS--DADLWEALER------AHLK---DAI-------RRNSL 911
+P L + + +D E+ +A L +A ER A + DAI R SL
Sbjct: 73 TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 912 --GL---DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI--QK 964
GL + Q+ +FS G R L+L++AL+ RS +L+LDE T +D+ DA+I +K
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL--DAVIWLEK 190
Query: 965 TIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLEY 1002
++ T+++I+H L+ I+ D+I+ ++ + EY
Sbjct: 191 WLKS--YQGTLILISHDRDFLDPIV--DKIIHIEQQSLFEY 227
|
Length = 638 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 30/224 (13%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866
LS + + + +VG GAGKS++L + ++ G I G + + +L +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS-GSIQFAGQPLEAWSAAELARHRAY 73
Query: 867 IPQ--SPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG 921
+ Q +P F + F + H + L + LGLD ++ +
Sbjct: 74 LSQQQTPP-------FAMPVFQYLTLHQPDKTRTEAVASALNEVAEA--LGLDDKLGRSV 124
Query: 922 ENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSC- 973
S G+ Q + L+ +L+ ++L+LDE ++DV A + + + E C
Sbjct: 125 NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE---LCQ 181
Query: 974 ---TMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
+++ +H LN T+ DR+ LL G++L +E+L+ E
Sbjct: 182 QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-06
Identities = 62/199 (31%), Positives = 86/199 (43%), Gaps = 64/199 (32%)
Query: 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR-IVELER---GRILIDGFDIAKFGLMDLR 861
LSF++PP VGI+G GAGKS TLF+ I E+ G I I G + K +D
Sbjct: 342 DLSFSLPPGGIVGIIGPNGAGKS----TLFKMITGQEQPDSGTIKI-G-ETVKLAYVD-- 393
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------------RAHLKDAI 906
QS R LDP + +WE + RA++
Sbjct: 394 -------QS--------RDALDP-----NKTVWEEISGGLDIIKVGNREIPSRAYVG--- 430
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-----DAL 961
R N G D Q + G S G+R L L++ L + +L+LDE T +DV T +AL
Sbjct: 431 RFNFKGGDQQ-KKVG-VLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488
Query: 962 IQKTIREEFKSCTMLIIAH 980
EF C + +I+H
Sbjct: 489 ------LEFPGCAV-VISH 500
|
Length = 556 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 52/217 (23%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-FRIVELER--GRILIDGFDIAKFGLM 858
P+L S + P + V ++GR G+G S++L L R G I +G +F
Sbjct: 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE- 79
Query: 859 DLRKILGIIPQSPVLFSG---------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909
+++ TVR LD F+
Sbjct: 80 --------KYPGEIIYVSEEDVHFPTLTVRETLD-FA----------------------- 107
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE- 968
L + +E S G+R+ +S++ AL+ R+ +L D +T +D T I K IR
Sbjct: 108 ---LRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 969 --EFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEY 1002
K+ T + + + I D D++L+L GR + Y
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 32/232 (13%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240
L NI+ ++P G +V I+G G GK++L + + G P + + I+G+ A + S +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-NKGTVDIKGSAALIAISSGLNG 98
Query: 241 A-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI-------SGG 292
T +NI EK ++ ++ E + G I S G
Sbjct: 99 QLTGIENIELKGLMMGLTKEKIKEIIP-----------EIIEFADIGKFIYQPVKTYSSG 147
Query: 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 352
K R+ A +V+ N D+ + D+ LS D ++ D+ + GKT ++ H LS
Sbjct: 148 MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFIS---HSLS 204
Query: 353 QVD----RIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKED 400
QV + + +H G VKE G +++ ++ + + ++ +M VEE++D
Sbjct: 205 QVKSFCTKALWLHYGQVKEYGDIKEVVDH---YDEFLKKYNQMS--VEERKD 251
|
Length = 549 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 63/278 (22%), Positives = 116/278 (41%), Gaps = 55/278 (19%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 219
+ R+ +S+ E L IN G +VA++G G GK++L G L P S
Sbjct: 2 LETRDLKYSYPDGTE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 220 ---------DASAVI--RGTVAYVPQVS--WIFNATVRDNILFGSAFEPARYEKAIDVTS 266
D +++ R TV V Q +F TV +++ FG
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP--------------- 104
Query: 267 LQHDLDL-LPGGDVTE--------IGERGV------NISGGQKQRVSMARAVYSNSDVFI 311
L+L L +V + +G G ++SGGQK+RV++A + ++ +
Sbjct: 105 ----LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160
Query: 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGT 370
D+P S LD Q+ G T ++ T+ + + D++ ++ +G + +EGT
Sbjct: 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
Query: 371 FEDLSNNGELFQKLMENAGKMEEYVE--EKEDGETVDN 406
+++ ++ E +K ++ +E KED +
Sbjct: 221 PKEVFSDIETIRKANLRLPRVAHLIEILNKEDNLPIKM 258
|
Length = 275 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA-----------------V 224
+N DI + AI+G +G GK++ + A+ + +L P + +
Sbjct: 58 VNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117
Query: 225 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
+R + V Q F ++ DNI +G +K ++ + L E+ +
Sbjct: 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK---SLRKAALWDEVSD 174
Query: 285 R----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK- 339
R + +SGGQ+QR+ +AR + ++ + D+P SALD ++ D + EL G
Sbjct: 175 RLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIED--LIQELRGSY 232
Query: 340 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
T ++VT+ + S+V D + +EG++ E L N
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 51/244 (20%)
Query: 162 AISIRNGYFSWDSKAERPTLLN-INLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELP--- 216
+S + K + T+LN ++L + G VA++G +G GK++L ++G E P
Sbjct: 8 GLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG 67
Query: 217 -------PVS----DASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 265
P++ R + V Q D+I SA P + + I
Sbjct: 68 NVSWRGEPLAKLNRAQRKAFRRDIQMVFQ----------DSI---SAVNPRKTVREIIRE 114
Query: 266 SLQHDLDLLPGGDVTEIGE--------------RGVNISGGQKQRVSMARAVYSNSDVFI 311
L+H L L + E R +SGGQ QRV +ARA+ + I
Sbjct: 115 PLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLI 174
Query: 312 FDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVD----RIILVHEGMVK 366
D+ +S LD + V + + G + +T H L V+ R++++ G +
Sbjct: 175 LDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFIT---HDLRLVERFCQRVMVMDNGQIV 231
Query: 367 EEGT 370
E
Sbjct: 232 ETQP 235
|
Length = 268 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 791 DVVLR------YRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LE 841
+V+L + P P + +SF++ + +GI G GAG++ ++ LF
Sbjct: 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW 316
Query: 842 RGRILIDGFDIA--------KFGLMDL---RKILGIIPQSPVLFSGTVRFNLDPFSEHSD 890
G I IDG + G+ + RK GI+P V + T+ LD F+ S
Sbjct: 317 EGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLA-ALDRFTGGSR 375
Query: 891 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950
D +A E + ++I+R + A A S G +Q L++ LL KIL+LDE
Sbjct: 376 ID--DAAELKTILESIQRLKVKT-ASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEP 432
Query: 951 TAAVDVRTDALIQKTIREEFKSCTMLI-IAHRLNTIID-CDRILLLDSGRV 999
T +DV I K I + + +I I+ L ++ DR+L++ G++
Sbjct: 433 TRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 27/235 (11%)
Query: 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKS----SMLNTLFRIVELERGRILIDGFDIAKFG 856
P++HG+S T+ + +VG +G+GKS + L L V GR+L+DG +A
Sbjct: 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
Query: 857 LMDLRKILGII--PQS---PVLFSGT-VRFNLDPFSEHS-DADLWEALERAHLKDAIRRN 909
L RKI I+ P+S P+ T R + + DA L ALE L++A R
Sbjct: 76 LRG-RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARV- 133
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQKT 965
L E S G Q + ++ ALL + ++ DE T +DV A L++
Sbjct: 134 ---LKLYPFE----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESI 186
Query: 966 IREEFKSCTMLIIAHRLNTIIDC-DRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
+++ ++ ML++ H + + D + ++ GR++E E L + + ++
Sbjct: 187 VQK--RALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRS 239
|
Length = 254 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRK 862
L +SF ++G GAGKS++L L + + G ILIDG ++ L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 863 ILGIIPQ----SPVLFSGTVRFNLD----PFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
+ II Q P + TV NL P H + L ++ + LG+D
Sbjct: 80 GVAIIYQELHLVPEM---TVAENLYLGQLP---HKGGIVNRRLLNYEAREQLEH--LGVD 131
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDAL--IQKTIREEFK 971
+ S+GQRQ++ +++AL R ++++ DE T+++ R + L + + +R E +
Sbjct: 132 IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGR 191
Query: 972 SCTMLIIAHRLNTIID-CDRILLLDSGR 998
+L ++HR+ I CD I + GR
Sbjct: 192 --VILYVSHRMEEIFALCDAITVFKDGR 217
|
Length = 501 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS---LISAMLGELPPV- 218
+ + N F ++ +++ L ++ I G V+I+G G GK++ LI + E
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 219 --------SDASAVIRGTVAYVPQV--SWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268
++ +R + V Q + ATV D++ FG + E+ I +
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIK----R 120
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
D LL + +SGGQKQRV++A + ++ I D+ S LD GRQ
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP-TGRQEI 179
Query: 329 DRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEE-------GTFEDLSNNG 378
R I E+ K ++ V + H L + DRI+++ G + +E T ED+ G
Sbjct: 180 MRVIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIG 238
Query: 379 -------ELFQKLMENAGKM-EEYVEEKEDGETVDNK 407
L + L +N + E+Y+ E E E + +K
Sbjct: 239 LDVPFSSNLMKDLRKNGFDLPEKYLSEDELVELLADK 275
|
Length = 277 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 55/219 (25%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
VL+ L IP V +VGR+G GKS TL R L+ G + G
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKS----TLLR---------LLAGLETPSAG------ 67
Query: 863 ILGIIPQSPVLFSGTVRFNLDPFSE--------HSDADL--WEAL-------ERAHLKDA 905
L +GT P +E DA L W+ + + +DA
Sbjct: 68 ---------ELLAGTA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA 113
Query: 906 IRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
+ ++GL + +E S GQ+Q ++L+RAL+ R +L+LDE A+D T +Q
Sbjct: 114 ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 964 KTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSGRV 999
I ++ T+L++ H ++ + DR+LL++ G++
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-06
Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 35/230 (15%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 865
+SF++ + +G G G+G++ ++N LF + + G I ++G DI+ +D ++K +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 866 IIPQS-------------------PVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906
I +S L G + + F E + E +R L A+
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAEN-QRELL--AL 398
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
+ +S+ + ++E S G +Q + +S+ L ++++ DE T +DV A I K +
Sbjct: 399 KCHSV--NQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452
Query: 967 R---EEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
R ++ K +L+++ L II CDRI + GR+ + T + +S E
Sbjct: 453 RQLADDGK--VILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEE 500
|
Length = 510 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 4e-06
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 23/129 (17%)
Query: 256 ARYEKAIDVTSL------QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309
R ++AID+ + LD+ P +SGG QRV +A A+ +
Sbjct: 126 TRRQRAIDLLNQVGIPDPASRLDVYPH-----------QLSGGMSQRVMIAMAIACRPKL 174
Query: 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTR---VLVTNQLHFLSQV-DRIILVHEGMV 365
I D+P +ALD + Q+ + + EL K VL+T+ L +++ +II+++ G V
Sbjct: 175 LIADEPTTALDVTIQAQIIELLL--ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232
Query: 366 KEEGTFEDL 374
E G D+
Sbjct: 233 VETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 27/174 (15%)
Query: 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864
GLSFT+ + V I G GAGK+S+L L + + G +L G I + + +L
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 865 ------GIIPQSPVLFSGT----VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD 914
GI L T +RF D LWEAL + L D
Sbjct: 78 YLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEALAQVGLA---GF----ED 124
Query: 915 AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968
V S GQ++ ++L+R L R+ + +LDE A+D + A ++ + +
Sbjct: 125 VPVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 43/224 (19%)
Query: 799 ELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG----FDI 852
P V L ++ + P ++G GAGKS++L LF I + + G IL G F
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 853 AKFGLMD----LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK----- 903
+K L + + + L ++ Q V+ ++W L R K
Sbjct: 67 SKEALENGISMVHQELNLVLQRSVM-----------------DNMW--LGRYPTKGMFVD 107
Query: 904 -DAIRRNS------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
D + R++ L +D SV Q Q++ +++A +KI+++DE T+++
Sbjct: 108 QDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
Query: 957 RTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGR 998
+ + IR+ + + C ++ I+H++ I CD I +L G+
Sbjct: 168 KEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 46/235 (19%), Positives = 89/235 (37%), Gaps = 38/235 (16%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
A+ + F + R L +++ + G VA++G G GK++L S +
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 220 ----------DASAVIRGTVAYVPQVSWIFNATVRDNILF-------GSAFEPARYEKAI 262
A + Q + + +VR N+ + A AR + +
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
L D ++ ++GG ++RV +ARA+ + + D+P LD
Sbjct: 118 ARLGLAERAD-----------DKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 323 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 374
R +R L+ + V H + ++ DR++++H G V +G +L
Sbjct: 167 -SRAAITAHVR-ALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
SGGQ+QR+++ARA+ + DV + D+P+SALD V QV
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQV 193
|
Length = 327 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 7e-06
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 160 LPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELP 216
+PAI +++ F ++ SKA + I++DI + AI+G +G GK++ I + + EL
Sbjct: 5 IPAIKVKDLSFYYNTSKA----IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE 60
Query: 217 -PVSDASAV-IRGTVAYVP---------QVSWIFNATVRDNILFGSAFEPARYEKAIDVT 265
PV V G Y P Q+ +F R N S +E Y I
Sbjct: 61 GPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQ---RPNPFPMSIYENVAYGVRISAK 117
Query: 266 SLQHDLD-----LLPGGDV-----TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315
Q DLD L G + ++ + + +SGGQ+QR+ +ARA+ V + D+P
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 316 LSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRI 357
SALD +V + +R EL T +VT H + Q R+
Sbjct: 178 CSALDPIATMKVEELIHSLRSEL---TIAIVT---HNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 8e-06
Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 39/228 (17%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASA 223
A + L +++ P ++ +++G TG GKT+ + + G++ +
Sbjct: 32 AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIF 91
Query: 224 VIRGTVAYVPQVSWIFN------ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGG 277
R + + +V +F ++ DN+L G R K + + + +
Sbjct: 92 NYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG-----VRAHKLVP----RKEFRGVAQA 142
Query: 278 DVTEIG----------ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
+TE+G + +SGGQ+Q + +AR + N +V + D+P SALD ++
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 328 FDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
+ IR T ++VT+ L +++ DR L +G + EEG E L
Sbjct: 203 -EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249
|
Length = 276 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 48/192 (25%)
Query: 185 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 228
L P G +V I+G G GK++ + + GEL P VI RGT
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNY 152
Query: 229 --------------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 274
YV + + V + L E ++++ ++ L++ LD
Sbjct: 153 FKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLENVLD-- 208
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCI 332
++ E +SGG+ QRV++A A+ ++DV+ FD+P S LD RQ + R I
Sbjct: 209 -----RDVSE----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDI---RQRLNAARVI 256
Query: 333 RGELSGKTRVLV 344
R V+V
Sbjct: 257 RELAEDGKYVIV 268
|
Length = 591 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 35/206 (16%)
Query: 194 VAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGTVAYVPQ-------------- 234
+AI+G G GK++L + G + P S D + G +Y Q
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 235 ----VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNIS 290
+S I + +R N + EP + EK I T Q + LLP ++
Sbjct: 102 PRQRISQILDFPLRLN----TDLEPEQREKQIIETLRQ--VGLLP----DHASYYPHMLA 151
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLH 349
GQKQR+ +ARA+ V I D+ L++LD + Q+ + + E G + + VT L
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG 211
Query: 350 FLSQV-DRIILVHEGMVKEEGTFEDL 374
+ + D+++++H+G V E G+ D+
Sbjct: 212 MMKHISDQVLVMHQGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 40/191 (20%)
Query: 163 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
I++ N ++ + LL N++L + G + +VG G GK++L+ + GEL P D+
Sbjct: 4 ITLENLSLAYGDR----PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DS 57
Query: 222 SAVIRG---TVAYVPQVSWIF-NATVRDNILFGSAFEP-----ARYEKAID--------- 263
V R V Y+ Q + TV D ++ F A E+A
Sbjct: 58 GEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI--EGFGELRELLAELEEAYALLADPDDEL 115
Query: 264 VTSLQHDLDLLPGGDV-TEIGE--RGVNI----------SGGQKQRVSMARAVYSNSDVF 310
+ L+ L+ L G + E G+ SGG ++RV++ARA+ D+
Sbjct: 116 LAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLL 175
Query: 311 IFDDPLSALDA 321
+ D+P + LD
Sbjct: 176 LLDEPTNHLDL 186
|
Length = 530 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 9e-06
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 43/255 (16%)
Query: 151 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 210
+ PP T G + + + S + + +++ ++ G +V I G G G++ L+ A
Sbjct: 246 VVKPPSTPGEVVLEVED--LSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEA 303
Query: 211 MLGELPPVS--------------DASAVIRGTVAYVP----QVSWIFNATVRDNILFGSA 252
+ G P S R +AYVP + + ++ +N++ G
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 253 FEPARYEKAI--------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304
+ L + D+ ++SGG +Q++ +AR +
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQLHFLSQV-DRII 358
D+ I P LD VG F I L +GK +L++ L + ++ DRI
Sbjct: 420 RRPDLLIAAQPTRGLD--VGAIEF---IHERLLELRDAGKAVLLISEDLDEILELSDRIA 474
Query: 359 LVHEGMVKEEGTFED 373
+++EG + E+
Sbjct: 475 VIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 32/218 (14%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNAT 242
NI+L +P S+ ++G G GK++L+ + G L P S + G W T
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGH-------PW----T 65
Query: 243 VRDNILFGSAFE-PARYEK--AID----VTSLQH-----DLDLLPGGDVTEIGERGV-NI 289
+D GS E P YE A + T+L ++L D+T G++
Sbjct: 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQF 125
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349
S G KQR+ +A A+ ++ + I D+P + LD +G Q IR V++++ H
Sbjct: 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-IGIQELRELIRSFPEQGITVILSS--H 182
Query: 350 FLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQK 383
LS+V D I ++ EG++ +G N +LF +
Sbjct: 183 ILSEVQQLADHIGIISEGVLGYQGKINKSENLEKLFVE 220
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 1e-05
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 52/272 (19%)
Query: 147 EKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTS 206
E + P G P + +RN S K +++ + G ++ I G G G+T
Sbjct: 248 EDLFPEPPEEGIGEPVLEVRN--LSGGGKVR-----DVSFTVRAGEILGIAGLVGAGRTE 300
Query: 207 LISAMLGELPPVSDASAVIRGT--------------VAYVP---QVSWIF-NATVRDNIL 248
L A+ G P S ++ G +AYVP + + + ++ +NI
Sbjct: 301 LARALFG-ARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359
Query: 249 FGS-------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301
S R E+A+ L + IG +SGG +Q+V +AR
Sbjct: 360 LASLRRFSRRGLIDRRKERAL-AERYIRRLRIKTPSPEQPIG----TLSGGNQQKVVLAR 414
Query: 302 AVYSNSDVFIFDDPLSALDAHVG--RQVFDRCIRGELS--GKTRVLVTNQLHFLSQV-DR 356
+ ++ V I D+P +D VG +++ R IR EL+ GK ++++++L L + DR
Sbjct: 415 WLATDPKVLILDEPTRGID--VGAKAEIY-RLIR-ELAAEGKAILMISSELPELLGLSDR 470
Query: 357 IILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388
I+++ EG + E E+ + + +M A
Sbjct: 471 ILVMREGRIVGELDREEAT-----EEAIMAAA 497
|
Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 347
SGGQ+QRV +A A+ + D+ I D+P +ALD V Q+ D + ++ EL G + +T+
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHD 217
Query: 348 LHFLSQV-DRIILVHEGMVKEEGTFEDL 374
L + + DR+ ++ G + E GT E L
Sbjct: 218 LGIVRKFADRVYVMQHGEIVETGTTETL 245
|
Length = 534 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 60/221 (27%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--ASAVIRGTVA------YV 232
L +++DIP S+ A++G +G GK S L L ++D +A I G+V Y
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGK----STFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 233 PQVSWI---------------FNATVRDNI-----------------LFGSAFEPAR--- 257
V+ + F ++R+NI L G + A
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
E+++ +L +++ + + + +SGGQ+QR+ +AR + + +V + D+P S
Sbjct: 177 VERSLRQAALWDEVN-------DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPAS 229
Query: 318 ALDAHVGRQVFDRCIRGELSGK-TRVLVTNQLHFLSQVDRI 357
ALD ++ D + EL+ + T V+VT H + Q RI
Sbjct: 230 ALDPIATSKIED--LIEELAEEYTVVVVT---HNMQQAARI 265
|
Length = 305 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-05
Identities = 58/262 (22%), Positives = 115/262 (43%), Gaps = 44/262 (16%)
Query: 787 IKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSM---LNTLF----- 835
IK +++V + +LP L +S I + + I+G+TG+GK++ LN L
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 836 ---------------RIVELERGRILIDGFDIAKF-GLMDLRKILGIIPQ--SPVLFSGT 877
+ E +++I K + ++R+ +G++ Q LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 878 VRFNL--DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSL 934
+ ++ P S + EA +RA I +GLD + S GQ++ ++L
Sbjct: 123 IEKDIIFGPVSMGVSKE--EAKKRA--AKYIEL--VGLDESYLQRSPFELSGGQKRRVAL 176
Query: 935 SRALLRRSKILVLDEATAAVD---VRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDR 990
+ L LV DE TA +D V+ I + ++ K T++++ H L+ +++ R
Sbjct: 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHDLDNVLEWTKR 234
Query: 991 ILLLDSGRVLEYDTPEELLSNE 1012
+ G++++ ++LS+
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
P L ++ T+ + + ++G +G GK+++LN + V + G I +DG + G R
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAE--R 72
Query: 862 KIL----GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV 917
++ G++P V V F L + + + + LE AH +++ L
Sbjct: 73 GVVFQNEGLLPWRNVQ--DNVAFGL----QLAGVEKMQRLEIAH--QMLKKVGL------ 118
Query: 918 SEAGENF----SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT----DALIQKTIREE 969
A + + S GQRQ + ++RAL ++L+LDE A+D T L+ K +E
Sbjct: 119 EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET 178
Query: 970 FKSCTMLIIAHRLNTIIDCDRILLLDS---GRVLE 1001
K +L+I H + + L+L S GRV+E
Sbjct: 179 GKQ--VLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-05
Identities = 51/259 (19%), Positives = 111/259 (42%), Gaps = 22/259 (8%)
Query: 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 825
+ + + ++ R R L L +S P + + ++G +GA
Sbjct: 6 RNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHL---LKNVSGVAKPGELLAVMGSSGA 62
Query: 826 GKSSMLNTL-FRIVE-LER-GRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFN 881
GK++++N L FR + ++ G +L++G ++R I + Q + + TVR +
Sbjct: 63 GKTTLMNALAFRSPKGVKGSGSVLLNG---MPIDAKEMRAISAYVQQDDLFIPTLTVREH 119
Query: 882 LDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-----ENFSVGQRQLLSL 934
L F H + + +R + + ++ L + G + S G+R+ L+
Sbjct: 120 LM-FQAHLRMPRRVTKKEKRERVDEVLQALGL-RKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIIDC--DRI 991
+ LL +L DE T+ +D + + ++ K T++ H+ ++ + D+I
Sbjct: 178 ASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKI 237
Query: 992 LLLDSGRVLEYDTPEELLS 1010
+L+ GRV +P++ +
Sbjct: 238 ILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 10/154 (6%)
Query: 174 SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAVIRGT 228
+ R ++ + G + + G G GKT+L+ + G PP++ + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 288
+ + ++ +A L S E R+ A + L + +R V
Sbjct: 69 DSIARGLLYLGHAPGIKTTL--SVLENLRFWHADHSDE--QVEEALARVGLNGFEDRPVA 124
Query: 289 -ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
+S GQ++RV++AR + S ++I D+P +ALD
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 224 VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
V+R + V Q F+ ++ DN+ FG RY K ++H L D E+
Sbjct: 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLN--RY-KGDLGDRVKHALQGAALWD--EVK 140
Query: 284 ER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
++ G+++SGGQ+QR+ +ARA+ + +V + D+P SALD R+V
Sbjct: 141 DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188
|
Length = 261 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 47/187 (25%), Positives = 68/187 (36%), Gaps = 54/187 (28%)
Query: 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN 246
+ G ++ IVG G GKT+ + + G+L P D T Y PQ
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQ------------ 68
Query: 247 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306
ID L GG++ QRV++A A+ N
Sbjct: 69 --------------YID----------LSGGEL---------------QRVAIAAALLRN 89
Query: 307 SDVFIFDDPLSALDAHVGRQVFDRCIR--GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364
+ ++FD+P + LD R R IR E KT ++V + L L + I V EG
Sbjct: 90 ATFYLFDEPSAYLDIE-QRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGE 148
Query: 365 VKEEGTF 371
G
Sbjct: 149 PGVYGIA 155
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 33/227 (14%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS---------AMLGELPPVSDASA--- 223
++ L +IN+ I + A++G +G GK++ + A + L +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 224 ---VIRGTVAYVPQVSWIFNATVRDNILFGSAF---------EPARYEKAIDVTSLQHDL 271
+R V V Q +F ++ +NI + E A + L ++
Sbjct: 73 DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV 132
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331
++ + + +SGGQ+QR+ +ARA+ + + D+P SALD + V +
Sbjct: 133 K-------DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP-ISSGVIEEL 184
Query: 332 IRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
++ + ++VT+ + +V D H G + E G ++ N
Sbjct: 185 LKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA----------------- 223
++++D P S+ AI+G +G GK++++ ++ + +L P + +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 224 VIRGTVAYVPQVSWIFNA-TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
IR V V Q F A ++ DN++ G R ++ ++ L + D E+
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN-GRVNRSEADEIVESSLKRVALWD--EV 138
Query: 283 GER----GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+R + +SGGQ+QR+ +AR + +V + D+P SALD
Sbjct: 139 KDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 46/227 (20%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------------- 228
+++L + G L I+G G GKT+++ + G+ P + S + GT
Sbjct: 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-DEGSVLFGGTDLTGLPEHQIARAG 78
Query: 229 VAYVPQVSWIF-NATVRDNI---------LFGSAF------EPARYEKAIDVTSLQHDLD 272
+ Q +F N TV +N+ +F S F E R E+ ++ L + D
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD 138
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
L G +S GQKQ + + + + + + D+P++ + + +
Sbjct: 139 RLAG-----------LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 333 RGELSGKTRVLVTNQ-LHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 377
L+GK V+V + F+ + + V H+G V EG+ + + +
Sbjct: 188 S--LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQAD 232
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 156 LTSGLPAISIRN-GYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL---ISAM 211
L+ A+ +RN F D +A L +I++ IP + A +G +G GK++L + M
Sbjct: 19 LSDEQTALEVRNLNLFYGDKQA----LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74
Query: 212 ---------LGEL----PPVSDAS---AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP 255
GE+ + D A +R V V Q F ++ +N+++G +
Sbjct: 75 NDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQG 134
Query: 256 ARYEKAIDVT--------SLQHDL-DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306
+ +D +L ++ D L E +SGGQ+QR+ +ARA+
Sbjct: 135 INNRRVLDEAVERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIE 186
Query: 307 SDVFIFDDPLSALD 320
+V + D+P SALD
Sbjct: 187 PEVLLLDEPTSALD 200
|
Length = 272 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 859
VLH +SF+I + + IVG +G+GKS++L+ L + G ++ +G ++K +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 860 LR-KILGIIPQ---------------SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK 903
LR + LG I Q P+L E RA
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPA--------------EINSRALEM 129
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALI 962
A ++GL+ + + S G+RQ ++++RAL+ ++++ DE T +D R D++
Sbjct: 130 LA----AVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 963 Q 963
Q
Sbjct: 186 Q 186
|
Length = 233 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 51/204 (25%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLR 861
L+ +S + P ++G +GAGK+++L+ L + + G ILI+G + K + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK----NFQ 78
Query: 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEA 920
+ G + Q V TVR EAL +R GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVR---------------EALR---FSALLR----GL------- 109
Query: 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-----CTM 975
SV QR+ L++ L + IL LDE T+ +D + I + +++ S CT+
Sbjct: 110 ----SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165
Query: 976 LIIAHRLNTII--DCDRILLLDSG 997
H+ + I DR+LLL G
Sbjct: 166 ----HQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 36/169 (21%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM------------LGELPPVSDASAV---- 224
L NIN+ + + A++G +G GK++ + GE+ D +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 225 -----IRGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDL 271
+R ++ V Q F ++ +N+ +G + R E A+ +L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
+G+ N+SGGQ+QR+ +ARA+ ++ ++ +FD+P SALD
Sbjct: 152 K-------DRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
|
Length = 265 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 43/223 (19%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID----GFDIAKFGLMDL-- 860
+SF + P + +GIVG +G+GK+++L + GR+ D + + DL
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCI-------SGRLTPDAGTVTYRMRDGQPRDLYT 77
Query: 861 -----RKIL-----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLK 903
R+ L G + Q+P V G + L ++ RA +
Sbjct: 78 MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNI-----RAEAQ 132
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA--- 960
D + + LD ++ + FS G +Q L ++R L+ R +++ +DE T +DV A
Sbjct: 133 DWLEEVEIDLD-RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 191
Query: 961 -LIQKTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 1001
L++ +RE ++I+ H L + DR++++ G+V+E
Sbjct: 192 DLLRGLVRE--LGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232
|
Length = 258 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 31/208 (14%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV------A 230
E L I+ I G +V +G G GKT+ + + G L P S + G V
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS-GEVRVAGLVPWKRRKK 91
Query: 231 YVPQVSWIF--------NATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDV 279
++ ++ +F + V D+ +A PAR++K +D S +LL ++
Sbjct: 92 FLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELS-----ELLDLEEL 146
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339
+ R +S GQ+ R +A A+ ++ D+P LD + +
Sbjct: 147 LDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 340 TRVLVTNQLHFLSQV----DRIILVHEG 363
T VL+T+ H++ + R++++ +G
Sbjct: 205 TTVLLTS--HYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 40/243 (16%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LER---GRILIDGFDIAKFGLM 858
V+ L+ TI V ++G +G GK+ T+ R+V LE+ G+I IDG D+ +
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76
Query: 859 DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL 913
R I ++ QS LF V + L + E +R +K+A+
Sbjct: 77 Q-RDIC-MVFQSYALFPHMSLGENVGYGLKMLGVPKE----ERKQR--VKEAL------- 121
Query: 914 DAQVSEAG------ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
V AG + S GQ+Q ++L+RAL+ + K+L+ DE + +D +++ IR
Sbjct: 122 -ELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180
Query: 968 EEFKS--CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024
E + T L + H + D +++++ G++++ +P+EL S F M G
Sbjct: 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF--MASFMG 238
Query: 1025 AAN 1027
AN
Sbjct: 239 DAN 241
|
Length = 351 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 53/260 (20%), Positives = 101/260 (38%), Gaps = 48/260 (18%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT--------VAYV 232
L ++NL + G + A++G G GK++L+ + G P + I +A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK-GTITINNINYNKLDHKLAAQ 79
Query: 233 PQVSWIFNA-------TVRDNILFGS--------------AFEPARYEKAIDVTSLQHDL 271
+ I+ TV +N+ G R + L+ DL
Sbjct: 80 LGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL 139
Query: 272 DLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD-- 329
D N+S KQ + +A+ + ++ V I D+P S+L +F
Sbjct: 140 DEKVA-----------NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188
Query: 330 RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388
+R E G V ++++L + ++ DR ++ +G G D+SN+ + +LM
Sbjct: 189 NQLRKE--GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIV--RLMVGR 244
Query: 389 GKMEEYVEEKEDGETVDNKT 408
+ KE+ + ++T
Sbjct: 245 ELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 46/236 (19%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAVIRGTV------- 229
R L +++L I G + A++G G GK++L+ A+ G+L + A + G V
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 230 ------------AYVPQVSW-IFNATVRDNILFG------SAFEPARYEKAIDVTSLQH- 269
A +PQ + F + R+ +L G A + I +L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV---------YSNSDVFIFDDPLSALD 320
L G DVT +SGG+ RV AR + + D+P +ALD
Sbjct: 134 GATALVGRDVT-------TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
Query: 321 AHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
++ D R + + + +V + DRI ++ +G + G D+
Sbjct: 187 LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADV 242
|
Length = 272 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 38/223 (17%)
Query: 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA------- 853
P + +SF++ + VG+ G GAG+S ++ L+ G++ +DG I
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 854 -KFGLM----DLRKILGIIPQSPV----------LFSGTVRFNLDPFSEHSDADLWEALE 898
+ G+M D RK GIIP V ++ E +AD + +
Sbjct: 326 IRAGIMLCPED-RKAEGIIPVHSVADNINISARRHHL-RAGCLINNRWEAENADRF--IR 381
Query: 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
++K R + N S G +Q L R L K+++LDE T +DV
Sbjct: 382 SLNIKTPSREQLIM----------NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGA 431
Query: 959 DALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRV 999
I I E +L ++ L ++ DRI+++ GR+
Sbjct: 432 KHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------- 854
P + +SF + + +GI G GA ++ ++ TLF I E G I + G I
Sbjct: 262 PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321
Query: 855 ---FGLM-DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLK------- 903
F L+ + R+ GI + F+ + N+ + L+ + +K
Sbjct: 322 NHGFALVTEERRSTGIYAYLDIGFNSLIS-NIRNYKNK-----VGLLDNSRMKSDTQWVI 375
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
D++R + G Q+ + S G +Q + + R LL + +IL+LDE T +DV I
Sbjct: 376 DSMRVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIY 431
Query: 964 KTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRV 999
+ I E K ++II+ + ++ DRIL++ +G V
Sbjct: 432 QLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
Length = 491 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 34/167 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVI------------- 225
L I+++I S+VA +G +G GK++ + + +L P + I
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 226 ----RGTVAYVPQVSWIFNATVRDNILFG--------SAFEPARYEKAIDVTSLQHDLDL 273
R V V Q F ++ +N+ +G +AF R E+ + +L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
++ E +SGGQ+QR+ +ARA+ + V + D+P SALD
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 12/176 (6%)
Query: 818 GIVGRTGAGKSSMLNTLFRIVELE-----RGRILI--DGFDIAKFGL--MDLRKILGIIP 868
++G +G GKS+ L R+ +L G I++ D +I + +++R + ++
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 869 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL--GLDAQVSEAGENFSV 926
Q P F ++ N+ + ++ +++A+R +L + ++ + N S
Sbjct: 106 QKPNPFPKSIFENV-AYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164
Query: 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 982
GQ+Q L ++RAL +IL+ DE T+A+D A I++ I + T+LI+ H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 41/203 (20%)
Query: 819 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--LRKILGIIPQSPV-LFS 875
++G +GAGK+++LN L E ++ G + +D ++ +G + Q + L +
Sbjct: 794 LMGASGAGKTTLLNVL---AERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPT 850
Query: 876 GTVRFNLD-----------PFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGE 922
TVR +L SE + ++ + LE DA+ V GE
Sbjct: 851 STVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAV----------VGVPGE 900
Query: 923 NFSVGQRQLLSLSRALLRRSKILV-LDEATAAVDVRTDALIQKTIREEFKS-----CTML 976
+V QR+ L++ L+ + K+L+ LDE T+ +D +T I K +R+ CT+
Sbjct: 901 GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTI- 959
Query: 977 IIAHRLNTII--DCDRILLLDSG 997
H+ + I+ + DR+LLL G
Sbjct: 960 ---HQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 5e-05
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 267 LQHD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
L HD + LP T +G +SGGQKQR+S+ARA+ N + I D+ S+LD
Sbjct: 557 LIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-05
Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 13/203 (6%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 865
+S + + +G+ G GAG++ + TL+ + GRI+++G +I L + L
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 866 IIP---QSPVLF-SGTVRFNLDPFSEHSDADLW--EALERAHLKDAIRRNSLGLD-AQVS 918
+P QS L+ + +N+ + H+ W A E A L + RR +L +
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALT-HNRRGFWIKPARENAVL-ERYRR-ALNIKFNHAE 398
Query: 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT-MLI 977
+A S G +Q + +++ L ++L++DE T VDV I + IR +L
Sbjct: 399 QAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF 458
Query: 978 IAHRLNTIID-CDRILLLDSGRV 999
I+ L I DR+L++ G +
Sbjct: 459 ISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 786 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
I ++V Y+ P L ++ TI +G TG+GKS+++ L + +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 843 GRILIDGFDIAKFG----LMDLRKILGIIPQSP--VLFSGTVRFNLDPFSEHSDADLWEA 896
G + +D I + +RK +G++ Q P LF TV ++ ++ EA
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGE-NFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
A K A+ +G+ + E S GQ + ++++ L KILVLDE TA +D
Sbjct: 122 EALAREKLAL----VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 956 VRTDALIQKTIREEFKSC-----TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+ +K + FK T++++ H ++ + + D + +L+ G+++ P+++
Sbjct: 178 PKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 46/189 (24%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------------ 849
P+L I +++V +VGR GAGKS+++ L V L+ GRI+ +
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 850 -------FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD------ADLWEA 896
+D G+ + + L L ++ S+ A L E
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVE----------TDPSEKNLNELAKLQEQ 126
Query: 897 LERA---HLKDAIRRN--SLGLDA--QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
L+ L++ I LGLD +S S G + +L RAL+ +L+LDE
Sbjct: 127 LDHHNLWQLENRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 950 ATAAVDVRT 958
T +D+ T
Sbjct: 183 PTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 6e-05
Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 872
P + + IVG G+GK+++ L R + G +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGV--------------------------- 33
Query: 873 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932
+ + + E L + V + S R L
Sbjct: 34 -----IYIDGEDILEEVLDQLLLII-------------------VGGKKASGSGELRLRL 69
Query: 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR-------EEFKSCTMLIIAHRLNTI 985
+L+ A + +L+LDE T+ +D +AL+ + K+ T+++ + +
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
Query: 986 IDCDRILLLDSGRVLEYDTPE 1006
+L R +
Sbjct: 130 G--PALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 7e-05
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 51/193 (26%)
Query: 185 NLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT----- 228
L IP G + I+G G GKT+ + + GEL P V+ RGT
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY 151
Query: 229 ----------VA----YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 274
V YV + +F VR+ L E + ++ ++ L++ LD
Sbjct: 152 FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRE--LLKKVDERGKLDEVVERLGLENILD-- 207
Query: 275 PGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RC 331
R + +SGG+ QRV++A A+ ++D + FD+P S LD RQ + R
Sbjct: 208 ----------RDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI---RQRLNVARL 254
Query: 332 IRGELSGKTRVLV 344
IR EL+ VLV
Sbjct: 255 IR-ELAEGKYVLV 266
|
Length = 590 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 34/222 (15%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
V+ L TI + + ++G +G GK+++L + + GRI++DG DI +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAEN 85
Query: 862 KILGIIPQSPVLFSG-TVRFNLD--------PFSEHSDADLWEALERAHLKDAIRRNSLG 912
+ + + QS LF TV N+ P +E + EAL L++ +R
Sbjct: 86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAE-ITPRVMEALRMVQLEEFAQRKPHQ 144
Query: 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972
L S GQ+Q ++++RA++ + K+L+LDE+ +A+D + ++K ++ E K+
Sbjct: 145 L-----------SGGQQQRVAIARAVVNKPKVLLLDESLSALDYK----LRKQMQNELKA 189
Query: 973 ------CTMLIIAH-RLNTIIDCDRILLLDSGRVLEYDTPEE 1007
T + + H + + DRI+++ GR+ + TP E
Sbjct: 190 LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-05
Identities = 58/237 (24%), Positives = 97/237 (40%), Gaps = 45/237 (18%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-------------- 835
E+VV RY L+ L T P VGI+G G GKS+ L L
Sbjct: 78 EEVVHRYGVN-GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPP 135
Query: 836 ---RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHSD 890
+++ RG L + F G +LR + + P + G V
Sbjct: 136 SWDEVIKRFRGTELQNYFKKLYEG--ELRAVHKPQYVDLIPKVVKGKVG----------- 182
Query: 891 ADLWEAL-ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
+L + + ER + + R LGL+ + S G+ Q ++++ ALLR + + DE
Sbjct: 183 -ELLKKVDERGKFDEVVER--LGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDE 239
Query: 950 ATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005
++ +D+R + IRE + ++++ H L ++D L D +L Y P
Sbjct: 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLD----YLSDFVHIL-YGEP 290
|
Length = 591 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLI---SAMLGELPPVSDASAV------------- 224
L I+LD L A++G +G GK++ + + M ++ + +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV---TSLQHDLDLLPGGD 278
+R V V Q F +V DN+ +G + ++ ID SL+ D
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKD 139
Query: 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
+ SGGQ+QR+ +ARA+ V + D+P SALD ++ + + EL
Sbjct: 140 --NLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLM--ELKH 195
Query: 339 K-TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
+ T ++VT+ L ++ D+ + G + E G E++
Sbjct: 196 QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 9e-05
Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 35/206 (16%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 235
+ L +NL I G + A++G G GK++L ++G P V G + + +
Sbjct: 11 GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG-HPKYE----VTEGEILFKGED 65
Query: 236 SWIFNATVRDNILFG--SAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--IS 290
I + + G AF P V + D L R VN S
Sbjct: 66 --ITDLPPEERARLGIFLAFQYPPEIP---GVKNA----DFL----------RYVNEGFS 106
Query: 291 GGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQL 348
GG+K+R + + + D+ I D+P S LD R V + +R E GK+ +++T+
Sbjct: 107 GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQ 164
Query: 349 HFLSQV--DRIILVHEGMVKEEGTFE 372
L + DR+ ++++G + + G E
Sbjct: 165 RLLDYIKPDRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 51/197 (25%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGELPP-------VSDASAVI---RGT------------ 228
G ++ +VG G GK++ + + G+L P D ++ RG+
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEG 85
Query: 229 -------VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
YV + V + L E + ++ +D L+H LD
Sbjct: 86 DVKVIVKPQYVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD--------- 134
Query: 282 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSG 338
R + +SGG+ QRV++A A+ ++D + FD+P S LD +Q + R IR
Sbjct: 135 ---RNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI---KQRLNAARLIRELAED 188
Query: 339 KTRVLVTNQLHFLSQVD 355
VLV H L+ +D
Sbjct: 189 DNYVLVVE--HDLAVLD 203
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 9e-05
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGE--------------LPPVSDASAVIRG----TVAYV 232
G L A++G +G GKT+L+ + G P + A I G +
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 233 PQVSWIFNATVRDNILFGSAF-----EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287
PQV TVR+++++ SAF E ++ EK + V + ++L D +G GV
Sbjct: 966 PQV------TVRESLIY-SAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAI-VGLPGV 1017
Query: 288 N-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 345
+S Q++R+++A + +N + D+P S LDA V R +R + +G+T V
Sbjct: 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTI 1076
Query: 346 NQ 347
+Q
Sbjct: 1077 HQ 1078
|
Length = 1470 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKV-GIVGRTGAGKSSMLNTLF------------- 835
E+ V RY L+GL IP KV GI+G G GK++ + L
Sbjct: 77 EEPVHRYGVN-GFKLYGLP--IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEE 133
Query: 836 ----RIVELERGRILIDGFDIAKFGLMDLRKILGI--IPQSPVLFSGTVRFNLDPFSEHS 889
+++ RG L + F G +++ + + P +F G VR
Sbjct: 134 PSWDEVLKRFRGTELQNYFKKLYNG--EIKVVHKPQYVDLIPKVFKGKVR---------- 181
Query: 890 DADLWE-ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948
+L + ER L + + R LGL+ + S G+ Q ++++ ALLR + D
Sbjct: 182 --ELLKKVDERGKLDEVVER--LGLENILDRDISELSGGELQRVAIAAALLRDADFYFFD 237
Query: 949 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 987
E T+ +D+R + + IRE + +L++ H L ++D
Sbjct: 238 EPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL-AVLD 275
|
Length = 590 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 44/229 (19%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASA--------------- 223
L +NL+IP ++ A++G +G GK++L+ L EL P + S
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 224 VIRGTVAYVPQV-SWIFNATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDL 273
+R V V Q+ + I N ++ +N+ G R A++ L ++
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK- 137
Query: 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
+ +SGGQ+QR+ +ARA+ +V + D+P + LD ++ +
Sbjct: 138 ------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI--ESLF 189
Query: 334 GELSGK-TRVLVTNQLHFLSQVDRI----ILVHEGMVKEEGTFEDLSNN 377
EL T VLVT HF Q RI +++G + E G ++ N
Sbjct: 190 LELKKDMTIVLVT---HFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 38/226 (16%)
Query: 184 INLDIPVGSLVAIVGGTGEGKTSLISAM--LGELPPVSDASAVIR--GTVAYVP------ 233
++L IP + A++G +G GK++L+ L EL + +R G Y P
Sbjct: 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82
Query: 234 ---QVSWIF-------NATVRDNILFGSAFE---------PARYEKAIDVTSLQHDLDLL 274
+V +F + T+ DN+ G R E A+ +L ++
Sbjct: 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-- 140
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334
+ + N+SGGQ+QR+ +ARA+ + + D+P + +D VG + +
Sbjct: 141 -----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDP-VGTAKIEELLFE 194
Query: 335 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGE 379
T VLVT+ ++V D + ++ G + E G + N E
Sbjct: 195 LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 78/229 (34%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TV--AYVPQVSWIF 239
+++ +P G +V ++G G GK++L + G+ P D+ + G TV AYV Q
Sbjct: 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGETVKLAYVDQ----- 392
Query: 240 NATVRDNILFGSAFEPAR--YEKAIDVTSLQHDLDLLPGGDVTEIGERGVN--------- 288
RD + +P + +E+ G D+ ++G+R V
Sbjct: 393 ---SRDAL------DPNKTVWEEISG------------GLDIIQLGKREVPSRAYVGRFN 431
Query: 289 ------------ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR------QVFDR 330
+SGG++ RV +A+ + S +V + D+P + LD R F
Sbjct: 432 FKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAG 491
Query: 331 CIRGELSGKTRVLVTNQLHFLSQVDRI---ILVHEG---MVKEEGTFED 373
C V++++ FL DRI IL EG + EG + +
Sbjct: 492 CA---------VVISHDRWFL---DRIATHILAFEGDSHVEWFEGNYSE 528
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 42/160 (26%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--------------PVSDAS 222
+ P L + + + G +V ++G G G ++L+ A+ P + +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 223 AVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
G + YV + F TVR+ + F + G +
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDF--------------ALRCK-------GNEFV- 116
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
RG ISGG+++RVS+A A+ S + V +D+ LD+
Sbjct: 117 ---RG--ISGGERKRVSIAEALVSRASVLCWDNSTRGLDS 151
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Query: 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDN 246
I G ++ IVG G GKT+ + G L P ++Y PQ + ++ TV D
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE-GEVDPELKISYKPQYIKPDYDGTVED- 419
Query: 247 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYS 305
L S D+ S + +++ + + ++ V +SGG+ QRV++A +
Sbjct: 420 -LLRSI--------TDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSR 470
Query: 306 NSDVFIFDDPLSALD 320
++D+++ D+P + LD
Sbjct: 471 DADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 347
+SGG++QRV++ARA DV D+P LD G ++ D G T +LVT+
Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
Query: 348 LHFLSQVDRIILVHEGMVKEE 368
L ++ DR + + G ++EE
Sbjct: 207 LQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 55/267 (20%), Positives = 108/267 (40%), Gaps = 40/267 (14%)
Query: 150 LLPNPPLTSGLPAISIRNGYFSWD-SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 208
L P+ P G + RN WD R + +++ + G ++ + G G G+T L+
Sbjct: 245 LYPHEPHEIGDVILEARN-LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV 303
Query: 209 SAMLGELPPVSDASA--------------VIRGTVAYVPQ------------VSWIFNAT 242
A+ G P + + IR +A VP+ V +
Sbjct: 304 QALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLS 363
Query: 243 VRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302
V + F + A + I +++Q L + IG +SGG +Q+ +A+
Sbjct: 364 VLKSFCFKMRIDAAAELQIIG-SAIQR-LKVKTASPFLPIG----RLSGGNQQKAVLAKM 417
Query: 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL-HFLSQVDRIILVH 361
+ +N V I D+P +D +++ + G ++V+++L L DR++++
Sbjct: 418 LLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIG 477
Query: 362 EGMVKEEGTFEDLSNNGELFQKLMENA 388
EG +K D N+ ++++ A
Sbjct: 478 EGKLK-----GDFVNHALTQEQVLAAA 499
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 39/220 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---GLMD 859
+L G+ + + + ++G +G+GKS++L L + + G + + G + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 860 LR-KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNS-------- 910
LR K +G + QS F L P ALE L +R S
Sbjct: 85 LRAKHVGFVFQS---------FMLIP--------TLNALENVELPALLRGESSRQSRNGA 127
Query: 911 ------LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
LGL ++ S G++Q ++L+RA R +L DE T +D +T I
Sbjct: 128 KALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIAD 187
Query: 965 ---TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
++ E + T++++ H L CDR L L +G++ E
Sbjct: 188 LLFSLNREHGT-TLILVTHDLQLAARCDRRLRLVNGQLQE 226
|
Length = 228 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-04
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQ 347
SGGQ QR+ +ARA+ + I D+P+SALD + QV + + ++ E+ G + + +
Sbjct: 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIA-- 219
Query: 348 LHFLSQV----DRIILVHEGMVKEEGTFEDLSNN 377
H L+ V DR+++++ G E GT++++ +N
Sbjct: 220 -HDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252
|
Length = 331 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 23/81 (28%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
Query: 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAH 980
E S G++ L+L++ LL +L+LDE T +D+ + +AL + ++ E+ T+++++H
Sbjct: 69 EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE-ALK-EYP-GTVILVSH 125
Query: 981 -R--LNTIIDCDRILLLDSGR 998
R L+ + +I+ L+ G+
Sbjct: 126 DRYFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 48/209 (22%), Positives = 89/209 (42%), Gaps = 29/209 (13%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD------------ASAVIRGTVA 230
N+ ++IP G AI+G G GK++L+ + + P AS + +
Sbjct: 25 NLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84
Query: 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHDLDLLPGG----DVTEIGER 285
+ Q NAT +I RY T + D + + +T + ++
Sbjct: 85 LLAQ-----NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ 139
Query: 286 GVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLV 344
V+ +SGGQ+QR +A + + + + D+P + LD + Q+ + EL+ + +
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD--ISHQIDLLELLSELNREKGYTL 197
Query: 345 TNQLHFLSQVDR----IILVHEGMVKEEG 369
LH L+Q R +I + EG + +G
Sbjct: 198 AAVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 32/210 (15%)
Query: 819 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 878
+VG GAGKS++L + + G I G + + +L + + Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQ-------- 80
Query: 879 RFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931
PF+ +W L R L + + +L LD ++ + S G+ Q
Sbjct: 81 --QTPPFAMP----VWHYLTLHQPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQR 133
Query: 932 LSLSRALLR-------RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIA-HRLN 983
+ L+ +L+ ++L+LDE ++DV + + + + + ++++ H LN
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
Query: 984 -TIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
T+ R LL G++L EE+L+
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 49/185 (26%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS 236
+ L +I+L G+ + ++G G GK++L+ M G + +A V Y+PQ
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEP 77
Query: 237 WI-FNATVRDNILFG---------------SAF------------EPARYEKAIDVTSLQ 268
+ TVR+N+ G + F E A ++ ID
Sbjct: 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA- 136
Query: 269 HDLDL----------LPGGD--VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316
DLD P D VT +SGG+++RV++ R + S D+ + D+P
Sbjct: 137 WDLDRKLEIAMDALRCPPWDADVT-------KLSGGERRRVALCRLLLSKPDMLLLDEPT 189
Query: 317 SALDA 321
+ LDA
Sbjct: 190 NHLDA 194
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 869
+I S+ +GI+G G GK++ + L +++ + G I I+ ++ K I
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQYIKAD 73
Query: 870 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929
+ GTVR D S + + + ++ + LD +V E S G+
Sbjct: 74 ----YEGTVR---DLLSSITKDFYTHPYFKTEIAKPLQIEQI-LDREVPE----LSGGEL 121
Query: 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAH 980
Q ++++ L + + I +LDE +A +DV + K IR E T ++ H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVP 233
A +P + ++L + G ++A+VGG+G GK+ +A LG LP +A V+ P
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 234 -QVSWIFNATVRDNILFGSAFEPAR------------YEKAIDVTSLQHDLDLLPGGDVT 280
+ AT+ N SAF P K D +L L+ + +
Sbjct: 74 CALRGRKIATIMQNPR--SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA 131
Query: 281 EIGER-GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
+ + +SGG QR+ +A A+ + I D+P + LD ++ D
Sbjct: 132 RVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILD 181
|
Length = 254 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 53/219 (24%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG-----FDIAKFGLM 858
+SF + P + +GIVG +G+GK+++LN L + + G + D+
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 859 DLRKIL----GIIPQSP-------VLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIR 907
+ R++L G + Q P V G + L D+ RA D +
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI-----RATAGDWLE 136
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA----LIQ 963
R + ++ + FS G +Q L ++R L+ +++ +DE T +DV A L++
Sbjct: 137 RVEIDAA-RIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 964 KTIREEFKSCTMLIIAHRLNTI-IDCDRILLLDSGRVLE 1001
+RE ++I+ H L + R+L++ GRV+E
Sbjct: 196 GLVRE--LGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232
|
Length = 258 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK-TRVLVTNQ 347
+SGGQ+QR+ +ARA+ D+ + D+P SALD Q+ + EL T ++VT
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMF--ELKKNYTIIIVT-- 219
Query: 348 LHFLSQVDRI 357
H + Q R
Sbjct: 220 -HNMQQAARA 228
|
Length = 267 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 6e-04
Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 44/163 (26%)
Query: 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFG 250
G ++ IVG G GKT+L A+ EL P I G + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL---------- 51
Query: 251 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310
+G + + SG + R+++A A DV
Sbjct: 52 -----------------------------IIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 311 IFDDPLSALDAHVGRQVFDRCIRGEL-----SGKTRVLVTNQL 348
I D+ S LDA + L V++T
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 36/172 (20%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM---------------LGELPPVSDA 221
P L N++L + G VA+ G +G GK++L+ ++ G ++ A
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 222 S-----AVIRGTVAYV-------PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
S V R T+ YV P+VS + + G E AR + L
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSAL-EVVAEPLLERGVPREAARARARELLARLNI 138
Query: 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321
L T SGG++QRV++AR ++ + + D+P ++LDA
Sbjct: 139 PERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 26/183 (14%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT----VAYV 232
+R L +++L++ G ++ ++G G GK++L+ +LG + P VI+ + YV
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNGKLRIGYV 72
Query: 233 PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE----IGERGVN 288
PQ ++ + T+ P + + + D+LP + I
Sbjct: 73 PQKLYL-DTTL-----------PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQK 120
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC--IRGELSGKTRVLVTN 346
+SGG+ QRV +ARA+ + + + D+P +D + ++D +R EL ++V++
Sbjct: 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL-DCAVLMVSH 179
Query: 347 QLH 349
LH
Sbjct: 180 DLH 182
|
Length = 251 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 7e-04
Identities = 64/264 (24%), Positives = 105/264 (39%), Gaps = 69/264 (26%)
Query: 719 AFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP-SEAPLVIESNRP 777
F G+L L T +L+ A +A+ L E++ ++LP + P
Sbjct: 200 DFVQFAGVLADCTLAETGEREEILQQALVAQ--LAHSEQLEG-VQLPEPDEPSARH--AL 254
Query: 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 837
P P I + V+ Y P+LH LS+ + P + IVG GAGKS++L+
Sbjct: 255 PANEPR---IVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLS----- 304
Query: 838 VELERGRILIDG-------FDIAKFG--------LMDLRKILGIIPQSPVL---FSGTVR 879
LI G D+ FG + D++K +G + S L S +VR
Sbjct: 305 --------LITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVR 356
Query: 880 -------------FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG-ENFS 925
+ + A W + LG+D + ++A + S
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQKLAQQWLDI-------------LGIDKRTADAPFHSLS 403
Query: 926 VGQRQLLSLSRALLRRSKILVLDE 949
GQ++L + RAL++ +L+LDE
Sbjct: 404 WGQQRLALIVRALVKHPTLLILDE 427
|
Length = 490 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 25/89 (28%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTN 346
+SGG +QRV +A A+ V I D+P +ALD + Q+ + ++ E+S + +T+
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGV-IFITH 227
Query: 347 QLHFLSQV-DRIILVHEGMVKEEGTFEDL 374
+ ++++ DR++++++G E G+ E +
Sbjct: 228 DMGVVAEIADRVLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI----AKFGL 857
P ++ +SFT+ + +G+ G GAG++ ++ L+ + G + +DG ++ + GL
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325
Query: 858 M-------DLRK----ILGIIPQSPVLFSGTVRFN-----LDPFSEHSDADLWEALERAH 901
+ RK +LG+ +V+ N L FS + L A E+
Sbjct: 326 ANGIVYISEDRKRDGLVLGM----------SVKENMSLTALRYFS-RAGGSLKHADEQQA 374
Query: 902 LKDAIRRNSL---GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958
+ D IR ++ ++ + S G +Q ++++R L+ R K+L+LDE T VDV
Sbjct: 375 VSDFIRLFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA 430
Query: 959 DALIQKTIREEFKSCTMLII--AHRLNTIID-CDRILLLDSGRV 999
I + I +FK+ + II + + ++ DRIL++ GR+
Sbjct: 431 KKEIYQLI-NQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-04
Identities = 69/237 (29%), Positives = 103/237 (43%), Gaps = 72/237 (30%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 863
LSF P K+G++G GAGKS TL RI + G D G K+
Sbjct: 28 LSFF--PGAKIGVLGLNGAGKS----TLLRI---------MAGVDKEFEGEARPAPGIKV 72
Query: 864 LGIIPQSPVL-FSGTVRFN-----------LDPFSEHS------DADLWEAL--ERAHLK 903
G +PQ P L TVR N LD F+E DAD +AL E+ L+
Sbjct: 73 -GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADF-DALAAEQGELQ 130
Query: 904 DAI-RRNSLGLDAQVSEAGE------------NFSVGQRQLLSLSRALLRRSKILVLDEA 950
+ I ++ LD+Q+ A + S G+R+ ++L R LL + +L+LDE
Sbjct: 131 EIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
Query: 951 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILLLDSGR 998
T +D + A +++ + ++ T++ + H DR IL LD GR
Sbjct: 191 TNHLDAESVAWLEQFLH-DYPG-TVVAVTH--------DRYFLDNVAGWILELDRGR 237
|
Length = 556 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 9e-04
Identities = 48/219 (21%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI---AKFGLM 858
+ +S T+P I+G +G GK+++L + + + G IL DG +I ++ L
Sbjct: 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80
Query: 859 DLRKILGIIPQSPVLFSG-TVRFNLD-PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ 916
+RK + ++ QS LF+ V N+ P EH+ L L + + ++ ++GL
Sbjct: 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTV--MMKLEAVGLRGA 136
Query: 917 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CT 974
S G + +L+RA+ +++ DE D T ++ K I E + T
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVT 196
Query: 975 MLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
++++H + ++ D ++ +++ + + + L +N
Sbjct: 197 CVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 37/227 (16%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-------------------ELP 216
++ L +NL + G + AI+G G GK++L + G EL
Sbjct: 11 EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE 70
Query: 217 PVSDASAVIRGTVAYVPQVSWIFNAT-VRDNILFGSAFEPARYEKAIDV----TSLQHDL 271
P A A + Y ++ + N +R + +A AR E+ +D+ L+ L
Sbjct: 71 PDERARAGLFLAFQYPEEIPGVSNLEFLRSAL---NARRSARGEEPLDLLDFLKLLKAKL 127
Query: 272 DLLPGGDVTEIGERGVNI--SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
LL G E R VN SGG+K+R + + + I D+ S LD + V +
Sbjct: 128 ALL--GMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 330 RCIRGELSGKTR--VLVTNQLHFLSQV--DRIILVHEGMVKEEGTFE 372
I L R +++T+ L+ + D + ++ +G + + G E
Sbjct: 186 -GI-NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 143 LLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGE 202
++ E+ + P P + + + Y+ E+ + +I++DI ++ A++G +G
Sbjct: 4 MVREKIEIAPFPEAKEHILEVKDLSIYY-----GEKRAVNDISMDIEKHAVTALIGPSGC 58
Query: 203 GKTSLISAM--LGELPPVSDASAVI-----------------RGTVAYVPQVSWIFNATV 243
GK++ + ++ + +L P + + I R + V Q F ++
Sbjct: 59 GKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSI 118
Query: 244 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER----GVNISGGQKQRVSM 299
+NI + R + +D ++ L D E+ +R +++SGGQ+QR+ +
Sbjct: 119 YNNITHALKYAGERRKSVLD-EIVEESLTKAALWD--EVKDRLHSSALSLSGGQQQRLCI 175
Query: 300 ARAVYSNSDVFIFDDPLSALD 320
AR + V + D+P SALD
Sbjct: 176 ARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 31/105 (29%), Positives = 58/105 (55%), Gaps = 7/105 (6%)
Query: 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 347
+SGG +Q+V++AR + + V I D+P +D ++++ + + G + +LV+++
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSE 454
Query: 348 L-HFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA-GK 390
+ L DRI+++HEG + E T E + +KLM A GK
Sbjct: 455 MPEVLGMSDRILVMHEGRISGEFTREQATQ-----EKLMAAAVGK 494
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 31/176 (17%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
PV L F + + + + G GAGK+++L L ++ +E G+I IDG + D
Sbjct: 25 PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATR---GDRS 81
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAI--RR------NSL-- 911
+ + + P L ADL LE H + RR ++L
Sbjct: 82 RFMAYLGHLPGL----------------KADL-STLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 912 -GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966
GL S GQ++ L+L+R L + + +LDE A +D+ L+ + I
Sbjct: 125 VGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180
|
Length = 214 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 60/239 (25%), Positives = 100/239 (41%), Gaps = 58/239 (24%)
Query: 745 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPP--PGWPSSGSIKFEDVVLRYRPELPP 802
ASL ++ + A++R+G+ + ++ E P PG P I F D Y P P
Sbjct: 468 ASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPI---ISFSDASFGY-PGGPL 523
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+ L+F I ++ +VG G GKS++L LI G +L+
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILK-------------LISG---------ELQP 561
Query: 863 ILGIIPQSPVLFSGTVRFNLDPFSEH--------SDADLW---------EALERAHLKDA 905
G + +S VR + FS+H S+ L+ E RAHL
Sbjct: 562 SSGTVFRSA-----KVRMAV--FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF 614
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV-RTDALIQ 963
+L L + +G GQ+ ++ ++ ++ IL+LDE + +D+ +ALIQ
Sbjct: 615 GVTGNLALQPMYTLSG-----GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329
SGGQ+QR+ +ARA+ N V I D+ +SALD + Q+ +
Sbjct: 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
|
Length = 623 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDAS--- 222
A L ++ ++ G ++ +VG G GK++L++ M G LP P+ S
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAE 66
Query: 223 -AVIRGTVAYVPQVSWIFNATVRDNI-LFGSA-FEPARYEKAI-DVTSLQHDLDLLPGGD 278
A R ++ Q + F V + L A+ +V D L
Sbjct: 67 LARHRAYLS--QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLG--- 121
Query: 279 VTEIGERGVN-ISGGQKQRVSMA-------RAVYSNSDVFIFDDPLSALDAHVGRQV-FD 329
R VN +SGG+ QRV +A + + + D+P+++LD V +Q D
Sbjct: 122 ------RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD--VAQQAALD 173
Query: 330 RCIRGELSGKTR-VLVTNQ-L-HFLSQVDRIILVHEG 363
R + EL + V++++ L H L DR+ L+ +G
Sbjct: 174 RLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 51/239 (21%), Positives = 87/239 (36%), Gaps = 39/239 (16%)
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS------------DASAVIR 226
+ +I+ +IP G +V +G G GK++ + + G L P S +R
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 227 --GTVAYVPQVSWIFNATVRDNILFGSAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEI 282
G V W + + +E + + +D L LDL +
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLD--FLTEILDLEG-----FL 150
Query: 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRV 342
+S GQ+ R +A A+ V D+P LD V Q R E + + +
Sbjct: 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD--VNAQANIREFLKEYNEERQA 208
Query: 343 LVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 397
V H + DR++L+ +G + +GT +L E G +E+ E
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLA----------QLQEQFGPYKEFSVE 257
|
Length = 325 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
SGGQ+QR+++ARA+ + I D+P S+LD V Q+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
|
Length = 529 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1171 | |||
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-171 Score=1698.45 Aligned_cols=1169 Identities=87% Similarity=1.310 Sum_probs=1016.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++++.+++.++.+|+|.+.++|+++||++||+|+||+.+.+++++.|++|++..++..++..+..++...+
T Consensus 454 ~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1622)
T PLN03130 454 FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI 533 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP 161 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~ 161 (1171)
+.++.+++||+|.+.+|.+|++.+|++++++..+..|+..+|..+..+.++++|++||++|+..++....++++......
T Consensus 534 ~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~ 613 (1622)
T PLN03130 534 PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLP 613 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCC
Confidence 77777888999999999999999999999999999999999999999999999999999999876542222222112234
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+.+.++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+...+++.|+||+|+||+|++
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfng 693 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNA 693 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCC
Confidence 69999999999854457899999999999999999999999999999999999999984445578899999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+|||.||.++++++|+++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||||++|+|||||||||+||+
T Consensus 694 TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 694 TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhccccC
Q 001055 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG 401 (1171)
Q Consensus 322 ~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1171)
++.+++++.+++...+++|+|+|||+++.++.+|+|++|++|+++++|+++++.+..+.|..+..+.+..++..++..+.
T Consensus 774 ~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~ 853 (1622)
T PLN03130 774 HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEE 853 (1622)
T ss_pred HHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccc
Confidence 99999998887655678999999999999999999999999999999999999988777887776543221111100000
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001055 402 ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRV 481 (1171)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (1171)
. .......+.........+.........+..+......+.++.|.+++.+|++|+++.++.+.++++++++++.+.+..
T Consensus 854 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~ 932 (1622)
T PLN03130 854 E-DDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRV 932 (1622)
T ss_pred c-ccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000000000000000000111122334566678889999999999998877777777777778888888
Q ss_pred hHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHH
Q 001055 482 SSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561 (1171)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~i 561 (1171)
..++|+++|.+..........++..+|++++++..++.+++.++....+.+++.++|++++++++++|+.||+++++|++
T Consensus 933 ~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~I 1012 (1622)
T PLN03130 933 SSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRI 1012 (1622)
T ss_pred HHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHH
Confidence 99999999988654333345667778888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 001055 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 641 (1171)
Q Consensus 562 i~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 641 (1171)
+||+++|++.+|..++..+..++..++.++..+++++++.++.+++++|++++++..+.++.+..++.++.....+++++
T Consensus 1013 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~ 1092 (1622)
T PLN03130 1013 INRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVY 1092 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999888999888888888888888888777888888777777777888888999999999999999
Q ss_pred HHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 001055 642 AQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721 (1171)
Q Consensus 642 ~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 721 (1171)
+++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....++|+.+.+.+++.+++++++.+.+...+.......+.
T Consensus 1093 ~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 1172 (1622)
T PLN03130 1093 AQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFA 1172 (1622)
T ss_pred HHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhh
Confidence 99999999999999999999999999999999988888888889999998888888777777666665544333334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCC
Q 001055 722 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801 (1171)
Q Consensus 722 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~ 801 (1171)
..+|.++++...+..++.++.+.....++.+.+++|+.++.+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+
T Consensus 1173 ~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~ 1252 (1622)
T PLN03130 1173 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC
Confidence 78899999999999999999999999999999999999999988776543333344556888899999999999976656
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
++|+|+||+|+|||+||||||||||||||+++|+|+++|++|+|.+||+|+++++++++|++|++|||||.+|++|||+|
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
|+++.+++|++++++++.++++++++++|.|+||.++++|.+|||||||||||||||+++|+|||||||||+||++|++.
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhchhhHHHHHHHhhcccch
Q 001055 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAE 1041 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1171)
|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.++..+.+++.....+.+.+
T Consensus 1413 Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a~~~~~~ 1492 (1622)
T PLN03130 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDED 1492 (1622)
T ss_pred HHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHHhccccc
Confidence 99999999899999999999999999999999999999999999999998778999999988877666665554222222
Q ss_pred hhhhhhhhhhcccchhhccchhhHHhhhhhhhhcccccccchhchhhhhhhHHHhhhhhHHHHHhhcccCchhHHHHhhh
Q 001055 1042 NKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLN 1121 (1171)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1171)
.....+....+.+.++....+|+..++++++.++++++++++.+++++.+++++++|+++.++++|.+|+||+.+.+.+.
T Consensus 1493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1572 (1622)
T PLN03130 1493 RLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLN 1572 (1622)
T ss_pred cccccchhcccchhhHHHhhhcccchhhhhhhhccccccchhccccCCchhhhhhhhhhHhHHHHhhccccccccchhhh
Confidence 22233344567788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCchhHHHHHHHHHhhhhhhhHhhhhccccCCCCCCCccccccccCC
Q 001055 1122 QHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171 (1171)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1171)
++++++|+||+++|+|+||+++|+|+++||.||++|++|+.++|||++||
T Consensus 1573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1622 (1622)
T PLN03130 1573 QRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGKSIDWDNVEM 1622 (1622)
T ss_pred hccCCcccchHHHHHHHhccccchhHHHHhhccCcccccCCcCChhhhcC
Confidence 99999999999999999999999999999999999999999999999997
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-171 Score=1610.10 Aligned_cols=1013 Identities=52% Similarity=0.873 Sum_probs=919.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNS 80 (1171)
Q Consensus 1 ~~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~ 80 (1171)
++|+|.++++++++++++.|+.+|+|+++++|+|+|||+||+|+||+.|.+++++.|++|++++||..++.++..+++.+
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~ 433 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFF 433 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCC
Q 001055 81 IPVLVTVVSFGMFT-LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLT 157 (1171)
Q Consensus 81 ~~~~~~~~~~g~~~-~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~ 157 (1171)
+|+++.+++|++|. ..++.+++..+|+++++|+.++.|+.++|..+..+.++.+|++|+++||..+|......+ +..
T Consensus 434 ~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~ 513 (1381)
T KOG0054|consen 434 SPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDE 513 (1381)
T ss_pred HHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCC
Confidence 99999999999998 667889999999999999999999999999999999999999999999998875433332 334
Q ss_pred CCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 158 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 158 ~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
++...|+++|.+|+|++....+.|+||||+|++|+.+||||+.|||||+||.+|+|+++..+|.+. .++.++||||.||
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~-v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA-VNGSVAYVPQQPW 592 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE-EcCeEEEeccccH
Confidence 455679999999999875556799999999999999999999999999999999999999987554 5667999999999
Q ss_pred CCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001055 238 IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317 (1171)
Q Consensus 238 l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts 317 (1171)
++++||||||+||.++++++|++++++|+|.+|++.+|.||.|.|||+|.+|||||||||+||||+|+|+||++||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhc
Q 001055 318 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 397 (1171)
Q Consensus 318 ~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 397 (1171)
++|+++.++|++.|++...++||+|+|||.++++++||+|++|++|+|.++|+++|+++.+..+.++..+....... +
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~-~- 750 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEE-E- 750 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcc-c-
Confidence 99999999999999988888999999999999999999999999999999999999998887777763322111100 0
Q ss_pred cccCccccCCCCCCCCC-CCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001055 398 KEDGETVDNKTSKPAAN-GVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 476 (1171)
Q Consensus 398 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~ 476 (1171)
...........+.... ................+.........++++.|.++|++|++|+++.++++.+++++++.++.
T Consensus 751 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~ 829 (1381)
T KOG0054|consen 751 -ASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLT 829 (1381)
T ss_pred -cccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 0000000000000000 00000000000001111112334456677899999999999999977777777788888899
Q ss_pred HHHHHhHHhhhhhhccccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 001055 477 ETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 553 (1171)
Q Consensus 477 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f 553 (1171)
+.+...+.+|+++|++...... ....+|.++|++++++..++.+++++++...+.++++++|+.++++++++||.||
T Consensus 830 ~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 830 QVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 9999999999999998865433 4678899999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 554 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 633 (1171)
Q Consensus 554 ~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 633 (1171)
+++|+|+|+|||++|++.+|..++..+..++..++.++++++++.+..|+.+++++|+.+++|....+|.+++|+++|++
T Consensus 910 dtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe 989 (1381)
T KOG0054|consen 910 DTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE 989 (1381)
T ss_pred CCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001055 634 SITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 713 (1171)
Q Consensus 634 ~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 713 (1171)
+.+|||+++|+.|++.|+.|||||+.+++|...+....|.+.+..+.....++|+++++++++++++++.+.++++....
T Consensus 990 sitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~ 1069 (1381)
T KOG0054|consen 990 SITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSG 1069 (1381)
T ss_pred hcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877654
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeE
Q 001055 714 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 793 (1171)
Q Consensus 714 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs 793 (1171)
. ...+.+|+.++|++.++.+++++.+.....|+.+.++||+.+|.+.|+|.|...+...+++.||..|.|+|+|++
T Consensus 1070 ~----~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~ 1145 (1381)
T KOG0054|consen 1070 L----ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLS 1145 (1381)
T ss_pred C----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeE
Confidence 2 115789999999999999999999999999999999999999999998866555555588999999999999999
Q ss_pred EEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccc
Q 001055 794 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 873 (1171)
Q Consensus 794 ~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 873 (1171)
.+|+++.++||+||||+|+|||+|||||++|||||||+++|.|+.+|.+|+|.|||+||++++++++|++++++||||.|
T Consensus 1146 ~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1146 LRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcC
Q 001055 874 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953 (1171)
Q Consensus 874 f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~ 953 (1171)
|+||+|.||||+.+++|+++|+||++|++++++.++|.|+|+.+.|+|.++|-||||.+||||||+++++||+|||+|++
T Consensus 1226 FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 954 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 954 LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+|++|...|+++|++.+++||||.|+||++++.+||||+||++|+|+|+|+|.+|++++++.|+++..
T Consensus 1306 VD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred CChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988875443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-150 Score=1496.63 Aligned_cols=1028 Identities=76% Similarity=1.184 Sum_probs=880.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++++.+++.++.+|+|.+.++|+++||++||+|+||+.+.+++++.|++|++..++.....++..++....
T Consensus 454 ~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1495)
T PLN03232 454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI 533 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999988888877777666666
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP 161 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~ 161 (1171)
+.++.+++||++.+.+|.+|++.+|++++++..+..|+..+|..+..+.++++|++||++|++.+++...+++.......
T Consensus 534 ~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~ 613 (1495)
T PLN03232 534 PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCC
Confidence 77777788999999999999999999999999999999999999999999999999999999876532211221112234
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+.+.++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+....++.|+||+|+||+|++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 69999999999854457899999999999999999999999999999999999999999888889999999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+|||.||.++++++++++++.|++.++++.+|+||+|.+|++|.+|||||||||+||||||++|+|||||||||+||+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhccccC
Q 001055 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG 401 (1171)
Q Consensus 322 ~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1171)
++++++++.+++...+++|+|+|||+++.+..+|+|++|++|+++++|+++++.++.+.|..+.......++..++....
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~ 853 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTND 853 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccc
Confidence 99999999887765678999999999999999999999999999999999999988888887766543211110000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001055 402 ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRV 481 (1171)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (1171)
+..... .+.. .. +..........+.+..+.....+++++.|.+++.+|++|+++.++.+.++++++++++.+++..
T Consensus 854 ~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1495)
T PLN03232 854 ENILKL--GPTV-TI-DVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRV 929 (1495)
T ss_pred cccccc--cccc-cc-cccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 00 0000000000001111112334566678889999999999998877777777777777888888
Q ss_pred hHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHH
Q 001055 482 SSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561 (1171)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~i 561 (1171)
...+|++.|.+..........+|..+|++++++..++.+++.++....+.+++.++|++++++++++|+.||+++++|++
T Consensus 930 ~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~i 1009 (1495)
T PLN03232 930 SSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRV 1009 (1495)
T ss_pred HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHH
Confidence 88999999987543222335677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 001055 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 641 (1171)
Q Consensus 562 i~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 641 (1171)
+||+++|++.+|..++..+..++..++.++..++++.++.++.+++++|++++++..+.++.+..++.++....+++++.
T Consensus 1010 lnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~ 1089 (1495)
T PLN03232 1010 INRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIY 1089 (1495)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 99999999999999988888888887777777777766667777777777777777777788888889999999999999
Q ss_pred HHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 001055 642 AQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721 (1171)
Q Consensus 642 ~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 721 (1171)
+++.|+++|+.+||+|+.++++.+.+.+..+...+..........|+.+.+..++.+++++++.+.+...+..+....+.
T Consensus 1090 ~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 1169 (1495)
T PLN03232 1090 AQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFA 1169 (1495)
T ss_pred HHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch
Confidence 99999999999999999999999999999998888888777788898888877776666665555554433322223345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCC
Q 001055 722 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801 (1171)
Q Consensus 722 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~ 801 (1171)
..+|+++.+...+..++..+.+.+..++..+.+++|+.++.+.++|.+...+...+++.||..|.|+|+||+|+|+++.+
T Consensus 1170 ~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~ 1249 (1495)
T PLN03232 1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP 1249 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC
Confidence 66778888888888888899999999999999999999999888775432222234456788889999999999976556
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|.+|++|||+|
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
|+++.+++|++++++++.++++++++++|.|+||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~ 1409 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhchhhHHHHHH
Q 001055 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 1033 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1171)
|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.++..+.+.++.
T Consensus 1410 Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~~~~ 1481 (1495)
T PLN03232 1410 IQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481 (1495)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhHHHHH
Confidence 999999998999999999999999999999999999999999999999988789999998877665554443
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-140 Score=1407.89 Aligned_cols=1013 Identities=41% Similarity=0.703 Sum_probs=850.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++++.++++++.+|+|.+.++|++++|++||+|+||+.+.+++++.|++|++..++..++..+..++....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 550 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT 550 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999888888777766666666
Q ss_pred HHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC--CCCCC
Q 001055 82 PVLVTVVSFGMFTLLG--GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP--NPPLT 157 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~--~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~--~~~~~ 157 (1171)
+.++.+++|++|.+.. +.++++.+|++++++..+..|+..+|..+..+.++.+|++||++|++.++..... .....
T Consensus 551 ~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 630 (1522)
T TIGR00957 551 PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIK 630 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccC
Confidence 7777777888887763 5799999999999999999999999999999999999999999999876532111 01111
Q ss_pred -CCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 158 -SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 158 -~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
.....|+++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+. ..+.||||||+|
T Consensus 631 ~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-~~g~i~yv~Q~~ 708 (1522)
T TIGR00957 631 PGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-MKGSVAYVPQQA 708 (1522)
T ss_pred CCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-ECCEEEEEcCCc
Confidence 11136999999999974 246799999999999999999999999999999999999999987654 567899999999
Q ss_pred CCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 237 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 237 ~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
|++++||+|||.||.+.+++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||||++|+++||||||
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhh
Q 001055 317 SALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 394 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~--~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 394 (1171)
|+||+++.+++++.+.+. ..+++|+|+|||+++++..||+|++|++|+++++|+++++.+..+.+..+.......+..
T Consensus 789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~ 868 (1522)
T TIGR00957 789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQ 868 (1522)
T ss_pred cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccc
Confidence 999999999999988742 346899999999999999999999999999999999999988766677665432211100
Q ss_pred h--hcc-c---cCccccC----C--C-----CCCCCCC---CCCCCCC---c---c-c-cccccccccchhhhhhhhccc
Q 001055 395 V--EEK-E---DGETVDN----K--T-----SKPAANG---VDNDLPK---E---A-S-DTRKTKEGKSVLIKQEERETG 446 (1171)
Q Consensus 395 ~--~~~-~---~~~~~~~----~--~-----~~~~~~~---~~~~~~~---~---~-~-~~~~~~~~~~~~~~~~~~~~g 446 (1171)
. ++. . ..+.... . . ....... ....... . . . .....+........++.+..|
T Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 948 (1522)
T TIGR00957 869 GHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTG 948 (1522)
T ss_pred ccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcC
Confidence 0 000 0 0000000 0 0 0000000 0000000 0 0 0 000000000112234556678
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhcccccc--CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001055 447 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTIYSLLSFGQVLVTLANSY 524 (1171)
Q Consensus 447 ~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 524 (1171)
.+++.+|+.|+++.|.. ..+++++++++...+....++|+++|.+.... ......++..+|++++++..++.++..+
T Consensus 949 ~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~ 1027 (1522)
T TIGR00957 949 QVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSM 1027 (1522)
T ss_pred cccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988754 33444455556667778889999999875421 1122345666888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 525 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604 (1171)
Q Consensus 525 ~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1171)
+....+.+++.++|+.++++++++|+.||+++++|+++||+++|++.+|..++..+..++..++.+++.++++++..++.
T Consensus 1028 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~ 1107 (1522)
T TIGR00957 1028 AVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIA 1107 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 605 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 684 (1171)
Q Consensus 605 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1171)
.++++|++++++.+..+|.+..++.++.....++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~ 1187 (1522)
T TIGR00957 1108 AVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777788888889999999999999999999999999999999999999999999999998888887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001055 685 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 764 (1171)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~ 764 (1171)
..|+.+.+++++.+++++++.+.+...+..+ .+.+|+++.+...+..++..+.+.+..++..+.+++|+.++.+.
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~ 1262 (1522)
T TIGR00957 1188 NRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSET 1262 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999998888776655555555544332222 45577788888888888899999999999999999999999988
Q ss_pred CCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 765 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 765 ~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
++|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+
T Consensus 1263 ~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1263 EKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred CCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 77654222233344568888999999999999865557999999999999999999999999999999999999999999
Q ss_pred EEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 845 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
|.+||+|+++++++++|++|++|||||.+|++|||+||+++++++|++++++++.++++++++++|.||||.++++|.+|
T Consensus 1343 I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1422 (1522)
T TIGR00957 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422 (1522)
T ss_pred EEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
|||||||+||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||||+||++|+|+|.|+
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hhHHhhcCCChHHHHHHhh
Q 001055 1005 PEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 1005 ~~el~~~~~~~~~~~~~~~ 1023 (1171)
|+||+++ ++.|+++++..
T Consensus 1503 ~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1503 PSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHHHHhC-CCHHHHHHHHc
Confidence 9999987 57898887753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-137 Score=1376.36 Aligned_cols=1016 Identities=35% Similarity=0.592 Sum_probs=834.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++.+.+++.++.+|+|++.++|++++||+||+|+||+.|.+++.+.|++|++..++..++..+..++...+
T Consensus 400 ~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~ 479 (1560)
T PTZ00243 400 LPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNAT 479 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------C---
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-------L--- 151 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-------~--- 151 (1171)
|.++.+++|++|.+.++.+|++.+|+++++++.+..|+.++|..+..+.++.+|++||++||..++... .
T Consensus 480 p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 559 (1560)
T PTZ00243 480 PTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWR 559 (1560)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcc
Confidence 888888899999999999999999999999999999999999999999999999999999997654100 0
Q ss_pred ------C---------C-------C-------C---------------------CCCCCCcEEEEeeEEEcCC-------
Q 001055 152 ------P---------N-------P-------P---------------------LTSGLPAISIRNGYFSWDS------- 174 (1171)
Q Consensus 152 ------~---------~-------~-------~---------------------~~~~~~~i~~~~~s~~~~~------- 174 (1171)
+ + | . .....+.+.++|+++.|+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1560)
T PTZ00243 560 EQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIV 639 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 0001124667777776531
Q ss_pred ------------------------------CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce
Q 001055 175 ------------------------------KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 224 (1171)
Q Consensus 175 ------------------------------~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~ 224 (1171)
..++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~- 718 (1560)
T PTZ00243 640 EGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW- 718 (1560)
T ss_pred cccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-
Confidence 0135689999999999999999999999999999999999999988765
Q ss_pred ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 225 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
.++.||||||+||++++||+|||.|+.+.+.+++.++++.|++.++++.+|+|+.|.+|++|.+|||||||||+|||||+
T Consensus 719 ~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~ 798 (1560)
T PTZ00243 719 AERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVY 798 (1560)
T ss_pred ECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999998777777888999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 384 (1171)
.+|++|||||||++||+++.+++++.++....+|+|+|+|||+++++..+|+|++|++|+++++|+++++.+.+ .+..+
T Consensus 799 ~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~-~~~~~ 877 (1560)
T PTZ00243 799 ANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATL 877 (1560)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhCh-HHHHH
Confidence 99999999999999999999999887665445689999999999999999999999999999999999998654 35544
Q ss_pred HHHhchhhhhhhccccCc--cccCCCCCCCCCCC--CCCCCCccccc-cccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 385 MENAGKMEEYVEEKEDGE--TVDNKTSKPAANGV--DNDLPKEASDT-RKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
........+..+.....+ ........+..... ........... .........+...+.+..|.++|.+|++|+++
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~ 957 (1560)
T PTZ00243 878 AAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRF 957 (1560)
T ss_pred HHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHH
Confidence 432110000000000000 00000000000000 00000000000 00000011222344556788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
.|+....+++++++++.+.+.....+|++.|.+.... .....|+.+|.++.++..+..+++.+.......+.+.++|+
T Consensus 958 ~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 1035 (1560)
T PTZ00243 958 CGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHR 1035 (1560)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766666666777788888889999999865321 22345666777776666666667777777777888899999
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
.++++++++|+.||++++.|+++|||++|++.+|..++..+..++..++.+++.++++++..++.+++++|++++++.+.
T Consensus 1036 ~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~ 1115 (1560)
T PTZ00243 1036 DLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLM 1115 (1560)
T ss_pred HHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888888777777777777777766666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
.+|.+..++.++.....++++++++.|+++|+.+||+|+.++.+.+.+.+..+...+..+.......|..+.+.++..++
T Consensus 1116 ~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~ 1195 (1560)
T PTZ00243 1116 QFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIV 1195 (1560)
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999999999999888887777778889988887776554
Q ss_pred HHHHHHHHHHh----cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCccc--
Q 001055 700 IWLTATFAVVQ----NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL-PSEAPLVI-- 772 (1171)
Q Consensus 700 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~-~~e~~~~~-- 772 (1171)
..+++.+.+.. .+.. ..+.+++++.++..+..++..+.+.+..++..+.+++|+.++.+. ++|+....
T Consensus 1196 ~~~~~~~~~~~~~~~~~~~-----~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1196 VTVIALIGVIGTMLRATSQ-----EIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 43332222211 1111 134567777777888888888899999999999999999999863 33211000
Q ss_pred ---------------------CCCCCC---CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHH
Q 001055 773 ---------------------ESNRPP---PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 828 (1171)
Q Consensus 773 ---------------------~~~~~~---~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKS 828 (1171)
+...++ +.|+..|.|+|+||+|+|+++.+++|+||||+|+|||+|||||+||||||
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHH
Confidence 001111 12345678999999999987656799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHH
Q 001055 829 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 908 (1171)
Q Consensus 829 TLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~ 908 (1171)
||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|.||++|||+||+++.+.+|++++++++.+++++++.+
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccCCcchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q 001055 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 987 (1171)
Q Consensus 909 lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~-p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 987 (1171)
+|.|+||.++++|.+|||||||||||||||+++ |+|||||||||+||+++++.|++.|++.++++|+|+||||++++.+
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~ 1510 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ 1510 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh
Confidence 999999999999999999999999999999995 8999999999999999999999999998899999999999999999
Q ss_pred cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhchh
Q 001055 988 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 1026 (1171)
Q Consensus 988 ~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~ 1026 (1171)
||+|+||++|+|+|.|+|+||+++.++.|+++++..+..
T Consensus 1511 ~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1511 YDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999987778999998876543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-136 Score=1359.63 Aligned_cols=1014 Identities=30% Similarity=0.526 Sum_probs=835.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++++++.++++++++.+|+|++.++|++++|++||+|+||+.|.+++++.|++|++..++..++..+..++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 314 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFS 314 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999888877766666677
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL 160 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~-~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 160 (1171)
+.++.+++|++|.+.++ ++++.+|++++++..+..|+. .+|..+..+.++.+|++||++||..++....+.. ...
T Consensus 315 ~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~---~~~ 390 (1490)
T TIGR01271 315 GFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN---LTT 390 (1490)
T ss_pred HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc---CCC
Confidence 77788888998887755 789999999999999999985 7999999999999999999999987653221111 112
Q ss_pred CcEEEEeeEEEcCCC-------------------------------CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHH
Q 001055 161 PAISIRNGYFSWDSK-------------------------------AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS 209 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~-------------------------------~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~ 209 (1171)
..++++|++|.|+.. ..+++|+|+||+|++|++++|+|||||||||||+
T Consensus 391 ~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~ 470 (1490)
T TIGR01271 391 TEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLM 470 (1490)
T ss_pred CceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHH
Confidence 359999999999631 0246899999999999999999999999999999
Q ss_pred HHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCcc
Q 001055 210 AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289 (1171)
Q Consensus 210 ~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~L 289 (1171)
+|+|+++|++|.+. +.+.|+||+|+||+|++||+|||.||.+++.+++.++++.|++.++++.+|.|+.|.+|++|.+|
T Consensus 471 ~l~G~~~~~~G~i~-~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~L 549 (1490)
T TIGR01271 471 MIMGELEPSEGKIK-HSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549 (1490)
T ss_pred HHhCCCCCCCceEE-ECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCc
Confidence 99999999988665 56789999999999999999999999877778899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 290 SGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
||||||||+||||||++|+++||||||++||+++++++++.++....+++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYG 629 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999987655444689999999999999999999999999999999
Q ss_pred ChhHHhhcchHHHHHHHHhchhhh----------------------h-----hhcc------ccCcc-c-----------
Q 001055 370 TFEDLSNNGELFQKLMENAGKMEE----------------------Y-----VEEK------EDGET-V----------- 404 (1171)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~----------------------~-----~~~~------~~~~~-~----------- 404 (1171)
+++++....+.|...........+ . .++. +.... .
T Consensus 630 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1490)
T TIGR01271 630 TFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPI 709 (1490)
T ss_pred CHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999998765545444321000000 0 0000 00000 0
Q ss_pred ---------------------cCCCCCCCCCC---------CCCCCC-----------------------Ccc--c----
Q 001055 405 ---------------------DNKTSKPAANG---------VDNDLP-----------------------KEA--S---- 425 (1171)
Q Consensus 405 ---------------------~~~~~~~~~~~---------~~~~~~-----------------------~~~--~---- 425 (1171)
......+.... .....+ ... .
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1490)
T TIGR01271 710 ASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRR 789 (1490)
T ss_pred ccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 00000000000 000000 000 0
Q ss_pred -----ccc--------------------c-ccc-----------c--cchhhhhhhhccccchHHHHHHHHHHhhhHHHH
Q 001055 426 -----DTR--------------------K-TKE-----------G--KSVLIKQEERETGVVSFKVLSRYKDALGGLWVV 466 (1171)
Q Consensus 426 -----~~~--------------------~-~~~-----------~--~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~ 466 (1171)
... . ... . .......+.+..|.+.|++|++|+++.|+++.+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~ 869 (1490)
T TIGR01271 790 EQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFV 869 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHH
Confidence 000 0 000 0 001122344567889999999999988766666
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhcccc-------cc-C-----------CCCchHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQS-------SL-K-----------THGPLFY-NTIYSLLSFGQVLVTLANSYWL 526 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------~~-~-----------~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 526 (1171)
+++++++++.+++.....+|+..|.... .. . .....+| .++|..+.++..++.+++.+++
T Consensus 870 ~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1490)
T TIGR01271 870 LIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPL 949 (1490)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777888888999998886421 00 0 0011222 3445555555667778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+++.++|+.++++++++|+.||+++++|+++|||++|++.+|..++..+..++..++.+++.++++++..++..+
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+++|++++++.+..+|.+..++.++.....++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+......+
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888888999999999999999999999999999999999999999999998887777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001055 687 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766 (1171)
Q Consensus 687 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~ 766 (1171)
|+.+.+.+++.+++..++.+.+... .. ....+|++++++..+...+..+.+.+..++..+.+++|+.++.+.++
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l~~~~~-~~-----~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~ 1183 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFIAIGTN-QD-----GEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQ 1183 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9988887766554433333322211 11 12346777778888888888888888889999999999999998877
Q ss_pred CCCcccC--------------CCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHH
Q 001055 767 EAPLVIE--------------SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 832 (1171)
Q Consensus 767 e~~~~~~--------------~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~ 832 (1171)
|.+...+ ...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||++
T Consensus 1184 e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1184 EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred ccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 6432111 11233468888999999999999876568999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCC
Q 001055 833 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 912 (1171)
Q Consensus 833 ~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~g 912 (1171)
+|+|+++ ++|+|.+||+|+++++++++|++|+||||+|.+|++|||+||+++...+|++++++++.+++++++.++|.|
T Consensus 1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 9999997 799999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred cchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEE
Q 001055 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 992 (1171)
Q Consensus 913 l~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~ 992 (1171)
+|+.+++.|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++||||+||||++++.+||+|+
T Consensus 1343 Ldt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1343 LDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred cccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred EEeCcEEEEecChhHHhhcCCChHHHHHHhhchhhH
Q 001055 993 LLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 1028 (1171)
Q Consensus 993 vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~ 1028 (1171)
||++|+|+|.|+|++|++. ++.|+++++..+..+.
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~~~ 1457 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRLKL 1457 (1490)
T ss_pred EEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChhcc
Confidence 9999999999999999974 6889999887665443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-132 Score=1226.20 Aligned_cols=996 Identities=24% Similarity=0.326 Sum_probs=750.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PVLV 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~ 85 (1171)
+.+.+.+...+.+....+.-+.+.|+++++|||-+|+.|+....++.+.-+...+...+..+..++...+..++ ....
T Consensus 191 ~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a 270 (1228)
T KOG0055|consen 191 LARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYA 270 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456778888888889999999999999999999999999999988877777777666666655543333222 2334
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--C-CCCCCCCc
Q 001055 86 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSGLPA 162 (1171)
Q Consensus 86 ~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~-~~~~~~~~ 162 (1171)
..+|||..++..+..+++.+++++..+......|....+.+..+..|++|+.+|.+.++..+.....+ . ........
T Consensus 271 ~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ 350 (1228)
T KOG0055|consen 271 LAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGE 350 (1228)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccc
Confidence 56889988899999999999999987777788888999999999999999999999998765433221 1 11222346
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~ 230 (1171)
|+++||+|+||.+++.++|+|+||.|++|+.++|||||||||||++++|.|+|+|++|.+. ++|.+||
T Consensus 351 ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred eEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence 9999999999988888999999999999999999999999999999999999999998753 3567899
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
.|.|+|.||++||+|||.||++ .+.+++.++++.++..+++..+|+|++|.+|++|.+|||||||||||||||+++|+|
T Consensus 431 lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 431 LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999999985 467889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 389 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 389 (1171)
||||||||+||+++++.+.+.| +...+|+|.|+|+||++.+.++|+|++|++|+|++.|+++||.+.++.|..+++.+.
T Consensus 511 LLLDEaTSaLD~~se~~Vq~AL-d~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEAL-DKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHH-HHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 9999999999999999887754 556689999999999999999999999999999999999999999899999987553
Q ss_pred hhhhhhh-ccccCcc-ccCCCC--CCCCCCCCCC-CCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHH
Q 001055 390 KMEEYVE-EKEDGET-VDNKTS--KPAANGVDND-LPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLW 464 (1171)
Q Consensus 390 ~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~ 464 (1171)
....... +..+... ....+. +......... ............+....... .+....++..+..+.+ ..++
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~s~~~i~k~~~--pe~~ 664 (1228)
T KOG0055|consen 590 LEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVS---EEDEKVSFWRIFKLNK--PEWP 664 (1228)
T ss_pred hhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccc---cccccccHHHHHHhcc--chhH
Confidence 2221110 0000000 000000 0000000000 00000000000000000000 0001222222222222 2344
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhh----c-cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYW----T-DQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~----~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
++++..++.++...........++.. . .+..........|..+|.++++...+..+++.|++.+.+.+...++|.
T Consensus 665 ~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~ 744 (1228)
T KOG0055|consen 665 YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRS 744 (1228)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333222222221 1 111111112334888899999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccccc--CChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW---AIMPLLLL 614 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~--~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~ 614 (1171)
.+|++++++++.|||. |. |.+.+|+.+|...+...+...+..++..+..++..+++.++.+|-..+ ++.|++++
T Consensus 745 ~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~ 823 (1228)
T KOG0055|consen 745 MMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLIL 823 (1228)
T ss_pred HHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 56 999999999999999888888888888888877777777666654333 44555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---
Q 001055 615 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR-WLAI--- 690 (1171)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 690 (1171)
....+..+.... ................|++.+++||++|..++++.+.+.+.++...+.......... .+++
T Consensus 824 ~~~~~~~~~~~~---~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs 900 (1228)
T KOG0055|consen 824 SGYLQKKFLKGF---SKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQS 900 (1228)
T ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333322211 111122222344577899999999999999999999999988877766555433221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 001055 691 RLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPL 770 (1171)
Q Consensus 691 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~ 770 (1171)
.+.+..++..|+++. ++..+..+....+.....+.++ ...+.........+..+..|+.++.++++.++..+.
T Consensus 901 ~~~~~~A~~f~~G~~--Li~~g~~~~~~~~~vf~~l~~t-----a~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~ 973 (1228)
T KOG0055|consen 901 LLFFVYALSFWYGAR--LISNGEMTFEDVFRVFMALSFT-----AMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDP 973 (1228)
T ss_pred HHHHHHHHHHHHhHH--HHhcCCcCHHHHHHHHHHHHHH-----HHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 111222222333222 2233333333333222221111 112222333344556677888999999877653222
Q ss_pred ccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 771 VIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 771 ~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
..+.. ....+.+|.|+++||+|+||.+ ..++|+|+||+|++|+.+||||||||||||++.+|.|+|+|++|.|.|||
T Consensus 974 ~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg 1051 (1228)
T KOG0055|consen 974 DSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG 1051 (1228)
T ss_pred CCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 11111 1122457899999999999743 23699999999999999999999999999999999999999999999999
Q ss_pred EecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 850 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 850 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.|+++++++++|++||+|.|+|.||++||||||.++. +.+.+++.+|++.+++++||..||+||||.++++|.+|||||
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQ 1131 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQ 1131 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchH
Confidence 9999999999999999999999999999999999873 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el 1008 (1171)
|||+|||||++|||+||||||+||+||.++++.++++|++...++|+|+|+||++++++||.|.|+++|+|+|+|+|++|
T Consensus 1132 KQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1132 KQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred HHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHhh
Q 001055 1009 LSNEGSSFSKMVQST 1023 (1171)
Q Consensus 1009 ~~~~~~~~~~~~~~~ 1023 (1171)
++ ..+.|.++++.+
T Consensus 1212 ~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1212 LA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred Hh-CCCchHHHhhhc
Confidence 98 567899888754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-120 Score=1197.28 Aligned_cols=1008 Identities=19% Similarity=0.277 Sum_probs=717.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VL 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 84 (1171)
++.+++++..++.++..++..+.+.|.++||++||.|+.|+.+..++.+..+...+...+.....++...+...+. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 295 (1466)
T PTZ00265 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASY 295 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788999999999999999999999999999987766666655555555544333333222 22
Q ss_pred HHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC-C
Q 001055 85 VTVVSFGMFTLLGG--------DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-P 155 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~--------~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~ 155 (1171)
+.++++|.+++..| .++++.+++++........++..+.+.+..+..+..|++||.++++.+++...... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~ 375 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGK 375 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc
Confidence 45567888888765 57888888776665555556666667789999999999999999987553221111 1
Q ss_pred CCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------
Q 001055 156 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 224 (1171)
Q Consensus 156 ~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------- 224 (1171)
..+....|+++|++|+|+...++++|+|+||+|++||++||+||||||||||+++|+|+++|++|.+..
T Consensus 376 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 376 KLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH
Confidence 111123699999999998544457999999999999999999999999999999999999999886543
Q ss_pred --ecCcEEEEecCCCCCcccHHHHHhcCCC--------------------------------------------------
Q 001055 225 --IRGTVAYVPQVSWIFNATVRDNILFGSA-------------------------------------------------- 252 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-------------------------------------------------- 252 (1171)
+++.||||+|+|.+|++||+|||.+|..
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 2346999999999999999999998731
Q ss_pred --------CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001055 253 --------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324 (1171)
Q Consensus 253 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~ 324 (1171)
.+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 134567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCC----------------------------------------
Q 001055 325 RQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG---------------------------------------- 363 (1171)
Q Consensus 325 ~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G---------------------------------------- 363 (1171)
+.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNN 695 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccccc
Confidence 999988766543 589999999999999999999999986
Q ss_pred -------EEEEecChhHHhh-cchHHHHHHHHhchhhhhhh-ccccCcc---ccCCCCCC-CC--CCCC-----CCCC-C
Q 001055 364 -------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVE-EKEDGET---VDNKTSKP-AA--NGVD-----NDLP-K 422 (1171)
Q Consensus 364 -------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~-~~--~~~~-----~~~~-~ 422 (1171)
+|+++|+++++++ ..+.|..++..+........ +..+... ........ .. .... .... .
T Consensus 696 ~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1466)
T PTZ00265 696 KINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESAS 775 (1466)
T ss_pred ccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57888888865432211100 0000000 00000000 00 0000 0000 0
Q ss_pred --ccccc--c--ccccc--cchhhhhh--hhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc
Q 001055 423 --EASDT--R--KTKEG--KSVLIKQE--ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 492 (1171)
Q Consensus 423 --~~~~~--~--~~~~~--~~~~~~~~--~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 492 (1171)
..... . ..... +.....+. ........+..+.++.... .+.+++.+++.++...+....+..++.+++
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 853 (1466)
T PTZ00265 776 NKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSY--KKDVTIIALSILVAGGLYPVFALLYAKYVS 853 (1466)
T ss_pred cccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00000 00000000 0000000111111111111 111333333444444555555555555544
Q ss_pred ccccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHHh
Q 001055 493 QSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAK 567 (1171)
Q Consensus 493 ~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~--~~~G~ii~r~s~ 567 (1171)
..... ......+..++++++++..++.+++.++....+.+...++|..+|++++++|+.||++ +++|++++|+++
T Consensus 854 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~ 933 (1466)
T PTZ00265 854 TLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933 (1466)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHH
Confidence 22111 1112345556666677778888999999999999999999999999999999999985 889999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHH-------------
Q 001055 568 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY-QS-TAREVKRL------------- 632 (1171)
Q Consensus 568 Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~-~~~~~~~~------------- 632 (1171)
|+..+...+...+..++..++.++..+++++++.+...++++|+++++...+... +. ..++.++.
T Consensus 934 Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1466)
T PTZ00265 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNS 1013 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Confidence 9999998777666666666666666655555555554444443332221111111 10 01111111
Q ss_pred HHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001055 633 DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWLTATFAVV 709 (1171)
Q Consensus 633 ~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 709 (1171)
..+..+.....+.|+++|+++||+|+.++++.+.+.+..+...+..........+....... ++.+++++++.+.+.
T Consensus 1014 ~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~ 1093 (1466)
T PTZ00265 1014 DDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIR 1093 (1466)
T ss_pred hHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223455778899999999999999999998888877766555444332222222222211 222222222233333
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC-CCCCCCccEE
Q 001055 710 QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP-PGWPSSGSIK 788 (1171)
Q Consensus 710 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~-~~~~~~g~i~ 788 (1171)
. +..+....+... .+.......+..+......++.+..+.+|+.++++.+++.+......... ......+.|+
T Consensus 1094 ~-g~it~g~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1167 (1466)
T PTZ00265 1094 R-GTILVDDFMKSL-----FTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIE 1167 (1466)
T ss_pred c-CCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEE
Confidence 2 222211111111 11111122334455666677888999999999987654321111111100 0112346799
Q ss_pred EEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------------
Q 001055 789 FEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--------------------------- 840 (1171)
Q Consensus 789 ~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--------------------------- 840 (1171)
|+||+|+|+++ ..++|+|+||+|+||+++|||||||||||||+++|+|+|+|
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 99999999743 24799999999999999999999999999999999999999
Q ss_pred ---------------------------CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHH
Q 001055 841 ---------------------------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDAD 892 (1171)
Q Consensus 841 ---------------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~ 892 (1171)
++|+|++||+|+++++..++|++||||||+|.||++||+|||.++. +.++++
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence 6999999999999999999999999999999999999999999874 468999
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--
Q 001055 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-- 970 (1171)
Q Consensus 893 i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-- 970 (1171)
+++|++.+++++||+++|.||||.++++|.+|||||||||||||||+++|+|||||||||+||+++++.|+++|.+..
T Consensus 1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCcEEEEEecChhhhhhcCEEEEEeC----cEEE-EecChhHHhhcCCChHHHHHHh
Q 001055 971 KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 971 ~~~tvi~vtH~~~~~~~~d~i~vl~~----G~i~-~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
+++|+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.++.|+++++.
T Consensus 1408 ~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred CCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 68999999999999999999999999 9955 8999999998556788888754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=720.85 Aligned_cols=548 Identities=26% Similarity=0.362 Sum_probs=444.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhcccccc-CCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 463 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-KTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
++.+.+.++++++.....+..|.+++..+|.... ..... .-...++.++.++..+...++.+++..++.+...++|.
T Consensus 146 ~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~ 225 (716)
T KOG0058|consen 146 WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRT 225 (716)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666677777777666554333 11111 11234556677788899999999999999999999999
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
.+|++++++.+.|||.+.+|++++|++.|...+.+.++..++..+...++.++.+..++++++-...+.+..+++...+.
T Consensus 226 ~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~ 305 (716)
T KOG0058|consen 226 DLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVA 305 (716)
T ss_pred HHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888887765554444444445555
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---G 696 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 696 (1171)
.+|.+..+++.+..+++-+...+...|.+++++|+|+|.+|....++|.+..+...+...........+....++. .
T Consensus 306 ~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~ 385 (716)
T KOG0058|consen 306 KIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLA 385 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHH
Confidence 6666666666666666667777888999999999999999998888888777766655544333322222222222 2
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccC
Q 001055 697 GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN---ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773 (1171)
Q Consensus 697 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 773 (1171)
.+.+++.+...+..+ .++.|.+++|.++ +...+..+...++.+.+...|.+|+.++++.++.-+..
T Consensus 386 ~~siL~~Gg~Lv~~g---------~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-- 454 (716)
T KOG0058|consen 386 VLSILFYGGHLVLTG---------SLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-- 454 (716)
T ss_pred HHHHHHhccchhhcC---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--
Confidence 222222222222221 2344555555554 44555566667777778889999999999876654322
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 774 SNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 774 ~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
....+. ...|.|+|+||+|+|+.+ ..++|+|+||+|+|||+||||||||+||||++++|.++|+|++|+|.+||+||
T Consensus 455 -G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 455 -GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPI 532 (716)
T ss_pred -Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeeh
Confidence 111122 457899999999999754 24699999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 853 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 853 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+++++..+|++||+|.|||.||++||+|||.++. ..+++++..|++.+++++||..+|+||+|.++|+|.+||||||||
T Consensus 533 ~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR 612 (716)
T KOG0058|consen 533 SDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR 612 (716)
T ss_pred hhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH
Confidence 9999999999999999999999999999998765 458999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+||||||++||.||||||+||+||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+|+|.|+|+||+++
T Consensus 613 IAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 613 IAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhh
Q 001055 1012 EGSSFSKMVQST 1023 (1171)
Q Consensus 1012 ~~~~~~~~~~~~ 1023 (1171)
.++.|+++++.+
T Consensus 693 ~~gly~~Lv~~q 704 (716)
T KOG0058|consen 693 PNGLYAKLVQRQ 704 (716)
T ss_pred cccHHHHHHHHh
Confidence 889999988764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-75 Score=713.47 Aligned_cols=543 Identities=29% Similarity=0.438 Sum_probs=443.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY--NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
.+.-+++..++.+++....|.+....+|...+........ ...+.++.++..++.+++.++....+.+....+-.+++
T Consensus 155 ~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~ 234 (709)
T COG2274 155 LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFF 234 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555666677788888888888888876554433332 33455566778899999999999999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
+|++++|+.||+++++|++++|+ +|++.|.+++...+...+..+...+..++++++.++...|+.+..++++......+
T Consensus 235 ~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~ 313 (709)
T COG2274 235 RHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313 (709)
T ss_pred HHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 46777777766666555555555555666666666666555555555555555555
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRY----TLVNMGANRWLAIRLEIVGGL 698 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l 698 (1171)
.+..++..+...+..+...+.+.|++.|+.++|+.+.|.++...+.+......+. .......+.+..+...+...+
T Consensus 314 ~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~ 393 (709)
T COG2274 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL 393 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556677899999999999999999998877777666655544 444444555555555555556
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 699 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYAL---NITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
++|+++...+-. ..++|.+++|.. ++..++..+...+..++....+.+|+.++++.|+|.+.. .
T Consensus 394 iL~~G~~lVl~~----------~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~ 460 (709)
T COG2274 394 ILWFGAILVLEG----------ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---K 460 (709)
T ss_pred HHHHHHHHHhcC----------CcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---c
Confidence 666665554422 245566666554 455666666777788889999999999999998875321 1
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
.....++..|.|+++||+|+|+++.+++|+|+|++|+|||+|||||+||||||||+|+|+|+|+|++|+|++||.|++++
T Consensus 461 ~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 461 TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12334456789999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 856 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
++..+|++|||||||+.+|++||+||+.+.++ .+++++.+|++.++++++|.++|.||+|.++|+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998765 47799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
||||+++|+|||||||||+||+++++.+.+.|.+...++|+|+||||+++++.||||+||++|+|+++|+|+|+++. ++
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 67
Q ss_pred hHHHHHHh
Q 001055 1015 SFSKMVQS 1022 (1171)
Q Consensus 1015 ~~~~~~~~ 1022 (1171)
.|.++++.
T Consensus 700 ~y~~l~~~ 707 (709)
T COG2274 700 LYARLYQQ 707 (709)
T ss_pred hHHHHHhc
Confidence 78877653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-72 Score=651.02 Aligned_cols=465 Identities=25% Similarity=0.396 Sum_probs=354.0
Q ss_pred cEEEEeeEEEcCCCCCC-CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC----CCccce------------
Q 001055 162 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAV------------ 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~-~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~----~g~~~~------------ 224 (1171)
.++++|++..|...++. ++++||||++.+||++||||+|||||||+.++|.|++++. +|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999999754322 5999999999999999999999999999999999999886 444311
Q ss_pred ----ecCcEEEEecCCCC-Cc--ccHHHHHhc----CCCCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCcc
Q 001055 225 ----IRGTVAYVPQVSWI-FN--ATVRDNILF----GSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l-~~--~Tv~eni~~----g~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~L 289 (1171)
..+.|+|+||+|.- +| .||.+.|.- ..... .++..+.++..++.+.... +...++|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 22359999999853 43 477766642 22111 1233445666666554433 2234689
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 001055 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 367 (1171)
Q Consensus 290 SGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~ 367 (1171)
||||||||.||+||+.+|++||+||||++||+.++..|.+.+.... ..|.++|+||||+..+.+ ||||++|++|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999887765 459999999999999876 79999999999999
Q ss_pred ecChhHHhhcch-HHHH-HHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhcc
Q 001055 368 EGTFEDLSNNGE-LFQK-LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 445 (1171)
Q Consensus 368 ~g~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (1171)
.|+.++++++.. .|.. +... .|..
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a--------------------------------~p~~---------------------- 261 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA--------------------------------VPRL---------------------- 261 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh--------------------------------CCCc----------------------
Confidence 999999875421 0000 0000 0000
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 446 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 525 (1171)
Q Consensus 446 g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 525 (1171)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 526 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 605 (1171)
Q Consensus 526 ~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1171)
+
T Consensus 262 -----------------------------------------------~-------------------------------- 262 (539)
T COG1123 262 -----------------------------------------------G-------------------------------- 262 (539)
T ss_pred -----------------------------------------------c--------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 606 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 685 (1171)
Q Consensus 606 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1171)
..
T Consensus 263 ----------------------------~~-------------------------------------------------- 264 (539)
T COG1123 263 ----------------------------DE-------------------------------------------------- 264 (539)
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 686 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 686 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
+....+
T Consensus 265 --------------------------------------------------------------------------~~~~~~ 270 (539)
T COG1123 265 --------------------------------------------------------------------------KIIRLP 270 (539)
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000000
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~---------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
...+ .+....++++|+++.|... ...+++||||++++||++||||+||||||||.++|+|
T Consensus 271 ~~~~-----------~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 271 RRGP-----------LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred cccc-----------cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000 0011248999999999731 2368999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEe--cCCCChHHHhhheEEEcCCcc--ccc-ccHHhhccC----CCCCC----HHHHHHHHHHhcHH
Q 001055 837 IVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LFS-GTVRFNLDP----FSEHS----DADLWEALERAHLK 903 (1171)
Q Consensus 837 ~~~p~~G~I~i~g~~--i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~~~~----~~~i~~~l~~~~~~ 903 (1171)
+.+|++|+|.++|.+ .+.-.....|+++-+|+|||. |-. .||.++|.. ..... .+.+.+.++.+++.
T Consensus 340 L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred CCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 999999999999987 232234457788999999996 333 499988741 11111 12233334444333
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecC
Q 001055 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHR 981 (1171)
Q Consensus 904 ~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~ 981 (1171)
. ...+..+.+||||||||+||||||..+|++||+|||||+||+-+.+.+.+.|+++.+ |.|.|+||||
T Consensus 420 ~----------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 420 P----------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred H----------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 1 146667789999999999999999999999999999999999999999999998764 6999999999
Q ss_pred hhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 982 LNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 982 ~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+..++. ||||+||.+|+|+|.|+.+++.+++...|.+...
T Consensus 490 l~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 490 LAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 999998 9999999999999999999999887777775443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-69 Score=675.09 Aligned_cols=550 Identities=19% Similarity=0.252 Sum_probs=404.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCC-C-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKT-H-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
++.+++.++...+....|..+...+|...... . . ...+..++.++.+...++.+++.++....+.+...++|..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 104 (588)
T PRK11174 25 NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLD 104 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666665555321111 1 1 1122333444555667778888889999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.+|+++++|++++|+++|++.++..+...+..++..++.++..++.++++++...++++..+++.+.....+.
T Consensus 105 ~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~ 184 (588)
T PRK11174 105 KLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVG 184 (588)
T ss_pred HHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776666666666666555555555555443333322222222233334
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW-- 701 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 701 (1171)
+..++..+......+.+.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (588)
T PRK11174 185 MGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALV 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455567788999999999999999999998888877666655444333222222222222222211111
Q ss_pred -HHHHHHHHhcCCcchh-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 702 -LTATFAVVQNGSAENQ-EAFA-STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 702 -~~~~~~~~~~~~~~~~-~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
+.+.+.+...-..+.. ..+. ......+.+...+..++..+............+.+|+.++++.+++.+.. .....
T Consensus 265 ~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~ 342 (588)
T PRK11174 265 AVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL 342 (588)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc
Confidence 1111111111111110 0000 00111112233445566666666677788889999999998776542211 11000
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
..+..+.|+++||+|.|.++ +++|+|+||+|+|||++|||||||||||||+++|+|++ |++|+|.+||+|+++++++
T Consensus 343 -~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 343 -ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPE 419 (588)
T ss_pred -CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHH
Confidence 11123469999999877544 47999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++++|+|++|.++++|.+|||||||||+||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred HHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999874 479999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+||+++. +.|.
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~-~~y~ 578 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFA 578 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc-hHHH
Confidence 999999999999999999999999999999988899999999999999999999999999999999999999764 5777
Q ss_pred HHHHh
Q 001055 1018 KMVQS 1022 (1171)
Q Consensus 1018 ~~~~~ 1022 (1171)
+++..
T Consensus 579 ~l~~~ 583 (588)
T PRK11174 579 TLLAH 583 (588)
T ss_pred HHHHH
Confidence 77654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-71 Score=689.72 Aligned_cols=485 Identities=21% Similarity=0.316 Sum_probs=352.6
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 161 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
+.|+++|++++|+... +.++|+||||++++||++||+|+||||||||+++|+|+++|++|.+..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4699999999996322 347999999999999999999999999999999999999998775421
Q ss_pred ----------e-cCcEEEEecCC--CCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCcccc
Q 001055 225 ----------I-RGTVAYVPQVS--WIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEI 282 (1171)
Q Consensus 225 ----------~-~~~i~~v~Q~~--~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i 282 (1171)
. +..||||+|+| .++ ..||.|||.++. ..+. +++.++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 1 13599999998 465 579999998752 1121 233444555555310 0112
Q ss_pred CCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEE
Q 001055 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILV 360 (1171)
Q Consensus 283 ~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l 360 (1171)
.....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++.. ||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3345689999999999999999999999999999999999999999977766544 8999999999999865 8999999
Q ss_pred eCCEEEEecChhHHhhcch-HHH-HHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhh
Q 001055 361 HEGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 438 (1171)
Q Consensus 361 ~~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1171)
++|++++.|+++++..... .|. .+.. ..+...
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~--------------------------------~~~~~~-------------- 276 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLA--------------------------------AVPQLG-------------- 276 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhh--------------------------------ccCccc--------------
Confidence 9999999888877642210 000 0000 000000
Q ss_pred hhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHH
Q 001055 439 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLV 518 (1171)
Q Consensus 439 ~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 518 (1171)
.+
T Consensus 277 --------------------------------------------------~~---------------------------- 278 (623)
T PRK10261 277 --------------------------------------------------AM---------------------------- 278 (623)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001055 519 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 598 (1171)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1171)
.|. . .
T Consensus 279 ---------------------------------------~~~-------~---~-------------------------- 283 (623)
T PRK10261 279 ---------------------------------------KGL-------D---Y-------------------------- 283 (623)
T ss_pred ---------------------------------------ccc-------c---C--------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001055 599 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYT 678 (1171)
Q Consensus 599 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~ 678 (1171)
..+.+.
T Consensus 284 ------------------------------------~~~~~~-------------------------------------- 289 (623)
T PRK10261 284 ------------------------------------PRRFPL-------------------------------------- 289 (623)
T ss_pred ------------------------------------Cccccc--------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 679 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERV 758 (1171)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~ 758 (1171)
.. ...++.
T Consensus 290 ---------------------------------------------------------------------~~---~~~~~~ 297 (623)
T PRK10261 290 ---------------------------------------------------------------------IS---LEHPAK 297 (623)
T ss_pred ---------------------------------------------------------------------cc---cccccc
Confidence 00 000000
Q ss_pred HhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------CCCcceeeeEEEcCCCEEEEECCCCCcHHH
Q 001055 759 GNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 829 (1171)
Q Consensus 759 ~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~---------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKST 829 (1171)
..+.... .. .. +....++++||++.|+.. ..++|+||||+|++||++||+|+|||||||
T Consensus 298 ----~~~~~~~----~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKST 365 (623)
T PRK10261 298 ----QEPPIEQ----DT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKST 365 (623)
T ss_pred ----cCccccc----cc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHH
Confidence 0000000 00 00 011249999999999621 135999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChH---HHhhheEEEcCCc--cccc-ccHHhhccCC---CCC-CHHHHHHHHHH
Q 001055 830 MLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFS-GTVRFNLDPF---SEH-SDADLWEALER 899 (1171)
Q Consensus 830 Ll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~i~~v~Q~~--~lf~-~tv~~nl~~~---~~~-~~~~i~~~l~~ 899 (1171)
|+++|+|+++|++|+|.++|.++...+.. .+|++|+||||++ .++. .||.+|+... ... ...+. .
T Consensus 366 Llk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~ 440 (623)
T PRK10261 366 TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA-----A 440 (623)
T ss_pred HHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH-----H
Confidence 99999999999999999999999876543 3567899999998 4665 4999998531 111 11111 1
Q ss_pred hcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEE
Q 001055 900 AHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTML 976 (1171)
Q Consensus 900 ~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi 976 (1171)
..+.++++.+ |++ ...+....+|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|+++.+ +.|||
T Consensus 441 ~~~~~~L~~~--gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi 518 (623)
T PRK10261 441 ARVAWLLERV--GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518 (623)
T ss_pred HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1233444442 553 345666788999999999999999999999999999999999999999999988753 68999
Q ss_pred EEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 977 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 977 ~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+||||++.+.. ||||++|++|+|++.|+++++...+...|.
T Consensus 519 ~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 519 FISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 99999999987 999999999999999999999865544444
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=666.85 Aligned_cols=543 Identities=31% Similarity=0.435 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
+.+..++.++...+....+.++...++...........+...+.++.+...++.+...++..+.+.+...++|.++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l 95 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKL 95 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555566665554443311111222233344444556667777778888888999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP-LLLLFYAAYLYYQS 624 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~~ 624 (1171)
++.|+.+|+++++|++++|+++|+..++..+......+...++.++..+++++...+...++++. +.++.+....+ .+
T Consensus 96 ~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~~ 174 (567)
T COG1132 96 LRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL-AR 174 (567)
T ss_pred HhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999999999999988776664444434455555555555555433333322 22223333333 22
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL----AIRLEIVGGLMI 700 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 700 (1171)
..++..+......+.+.+.+.|.++|++++|+|+.++...+.+....+...+............ .+...+...+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (567)
T COG1132 175 KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVL 254 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555556666788999999999999999999998766666555544444332222222222 222222222222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
+++ .+.+..+ ..+ .+.+..++.+...+..++..+.......+....+.+|+.++++.+++... .... .
T Consensus 255 ~~~-~~~~~~~-~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~ 322 (567)
T COG1132 255 ALG-GFLVLSG-SLT-----VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--L 322 (567)
T ss_pred HHH-HHHHHcC-CCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--C
Confidence 222 2222221 111 22233444455555666666677777778889999999999987554211 1111 1
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
....+.|+++||+|+|+++ +++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|.+||+|+++++..++
T Consensus 323 ~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 323 KDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 2344679999999999853 379999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|++|++|||++.+|++||++||.++.+ .++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998865 6999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+++++.+++.+.+..+++|+|+|+||++++.+||+|+||++|+|+|.|+|+||+++ ++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999988888999999999999999999999999999999999999987 6789988
Q ss_pred HHhh
Q 001055 1020 VQST 1023 (1171)
Q Consensus 1020 ~~~~ 1023 (1171)
+..+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 8754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=710.84 Aligned_cols=307 Identities=18% Similarity=0.280 Sum_probs=225.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533469999999999999999999999999999999999999999999999999865 455678889
Q ss_pred EEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|||||++.++.. |++|||.++.. ...+++.+. +.+.++. .|+....+....+|||||||||+|||||+.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~--lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQS--LGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH--cCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999988864 99999975321 122222111 2233333 255555666678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+|+||||||||+|||+.+++.+++.|++.. +++|||++||++++++. ||||++|++|++++.|+++++.++.+..|.-
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l 2167 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEE
Confidence 999999999999999999999999999864 57999999999999988 9999999999999999999998766533320
Q ss_pred HHHhhchhh-----HHHHHHHhhcccchhhhhhhhhhhcccchhhccchhhHHhhhhhhhhcccccccchhchhhhhhhH
Q 001055 1019 MVQSTGAAN-----AQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNI 1093 (1171)
Q Consensus 1019 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1171)
......... ........... .++.. ... . + .....+. +......+....
T Consensus 2168 ~i~~~~~~~~~~~~~~~v~~~i~~~------------fp~a~--~~e-~---~---~~~l~~~-----i~~~~~~~if~~ 2221 (2272)
T TIGR01257 2168 TMKIKSPKDDLLPDLNPVEQFFQGN------------FPGSV--QRE-R---H---YNMLQFQ-----VSSSSLARIFQL 2221 (2272)
T ss_pred EEEEcCcchhhhhHHHHHHHHHhhc------------Cccce--eec-c---c---cceEEEE-----eCcccHHHHHHH
Confidence 000000000 00000000000 00000 000 0 0 0000000 001145667788
Q ss_pred HHhhhhhH-HHHHhhcccCchhHHHHhhhcCcc
Q 001055 1094 LKKTKDAV-VTLQGVLEGKHDKEIEESLNQHEV 1125 (1171)
Q Consensus 1094 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1125 (1171)
|++.|..+ +..|++++++||+||++..++...
T Consensus 2222 L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2222 LISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHhcCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 99888777 899999999999999999977543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-68 Score=671.86 Aligned_cols=539 Identities=25% Similarity=0.323 Sum_probs=408.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
.+...+++.++...+....|.++...+|........... +...++++.++..++.+++.++....+.+...+++..++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (686)
T TIGR03797 137 DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVW 216 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666677777777766654322211111 233344555667788899999999999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
++++++|+.||+++++|++++|++ |+..+...+...+...+..+...+..++++++.++...++++.++++.+.+...+
T Consensus 217 ~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 295 (686)
T TIGR03797 217 DRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295 (686)
T ss_pred HHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 7888877665544444444444444444444445444443333333333333344
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLM 699 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ 699 (1171)
.+..++..+......+...+.+.|.++|+.++|+++.++++...+.+..+...+..........+....... +..++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (686)
T TIGR03797 296 GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAA 375 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555678899999999999999999999887777766665554444333333333332222 22222
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 776 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~ 776 (1171)
+++++.+.+.. +.. ++|.++++. ..+..++..+.......+....+.+|+.++++.++|.+.. ..
T Consensus 376 il~~g~~lv~~-g~l--------tiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~ 443 (686)
T TIGR03797 376 LFAAAISLLGG-AGL--------SLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KT 443 (686)
T ss_pred HHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cC
Confidence 33333333332 222 233333333 3344555566666677788899999999998876553211 11
Q ss_pred CCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001055 777 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 856 (1171)
Q Consensus 777 ~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~ 856 (1171)
. ..+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++
T Consensus 444 ~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 444 D--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred C--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1 11234579999999999755567999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+.++|++||||||+|.+|++||+|||.++.+.++++++++++.++++++++++|.|++|.++++|.+||||||||++|||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999987667899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
||+++|+|||||||||+||+++++.+.+.|++. ++|+|+||||++.+..||+|++|++|+|++.|+|+|++++ .+.|
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y 678 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999999985 6899999999999999999999999999999999999985 4677
Q ss_pred HHHHH
Q 001055 1017 SKMVQ 1021 (1171)
Q Consensus 1017 ~~~~~ 1021 (1171)
.+++.
T Consensus 679 ~~l~~ 683 (686)
T TIGR03797 679 AQLAR 683 (686)
T ss_pred HHHHH
Confidence 77664
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-68 Score=606.43 Aligned_cols=503 Identities=21% Similarity=0.323 Sum_probs=406.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 001055 510 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 589 (1171)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~ 589 (1171)
+++++..+..|+.-+..+....++-..+|.++|+++...+..-..+...|+++||+..|++.+|+.+-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999998776666666665555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHH
Q 001055 590 LLSTFVLIGIVSTM-SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 668 (1171)
Q Consensus 590 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 668 (1171)
+..+.+...++++. .+.+.+.++++.+.+...+++..+...+.....+..+.+++.+++.|...++.||+.+.+.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 55444444444433 33333333333444444555555556666667788899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001055 669 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLASL 747 (1171)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~ 747 (1171)
...+...+..........|..+.+.++.++++.....+.....+ .+....-...+++++. +.....+.++. .....
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~-~G~~~~~~aa~~ll~~--f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG-AGALAQPGAALALLVI--FAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCCcchhHHHHHHHHH--HHHHHHHhhhcchhHHH
Confidence 88888888777777778888888887776665533333222111 1111111222222222 22233333333 34455
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcH
Q 001055 748 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 827 (1171)
Q Consensus 748 ~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGK 827 (1171)
......+..|+.++.+.+++.... +.. .+ .....++++||+|+|+++.+++|+|+||++++||+|||+|+|||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~--~~--~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DEQ--TA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-ccc--cC--CccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 667778999999988766654321 011 11 1111699999999999887789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHH
Q 001055 828 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAI 906 (1171)
Q Consensus 828 STLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i 906 (1171)
|||+++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+.+|++|+|+||...+ +.+|++++++++++++.+++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765 46999999999999999999
Q ss_pred HHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 001055 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986 (1171)
Q Consensus 907 ~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 986 (1171)
+..|+|++|.+++.|..|||||||||+|||+|++|.+++||||||.|||+.|++.+++.|.+..+++|+|+||||+..++
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 987 DCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 987 ~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
.||||+||++|+++++|+|.+|+++ .+.|.++++
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999999985 567877664
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-71 Score=670.66 Aligned_cols=449 Identities=20% Similarity=0.311 Sum_probs=340.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCccce-------------e
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------I 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-------------~ 225 (1171)
+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+.. .
T Consensus 4 ~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 3699999999996 35799999999999999999999999999999999999986 6776432 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+..+||++|++.++ ..||+||+.++.. .+.+ ++.++++..++.+ .......+||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqk 149 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQ 149 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHH
Confidence 24599999999876 5799999987632 1111 2223333333321 12344578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|||+|||||+.+|++|||||||++||+.++.++++.+.+...+|+|+|+||||++++.. ||++++|++|+++..|+.++
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99999999999999999999999999999999999877765568999999999999875 89999999999987765432
Q ss_pred HhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHH
Q 001055 374 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVL 453 (1171)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 453 (1171)
+.... ..
T Consensus 230 ~~~~~-----~~-------------------------------------------------------------------- 236 (506)
T PRK13549 230 MTEDD-----II-------------------------------------------------------------------- 236 (506)
T ss_pred CCHHH-----HH--------------------------------------------------------------------
Confidence 21000 00
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 454 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 533 (1171)
Q Consensus 454 ~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 533 (1171)
T Consensus 237 -------------------------------------------------------------------------------- 236 (506)
T PRK13549 237 -------------------------------------------------------------------------------- 236 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 534 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 613 (1171)
Q Consensus 534 ~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 613 (1171)
.++
T Consensus 237 -----------------------------~~~------------------------------------------------ 239 (506)
T PRK13549 237 -----------------------------TMM------------------------------------------------ 239 (506)
T ss_pred -----------------------------HHh------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 614 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 693 (1171)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1171)
+
T Consensus 240 --------~----------------------------------------------------------------------- 240 (506)
T PRK13549 240 --------V----------------------------------------------------------------------- 240 (506)
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccC
Q 001055 694 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773 (1171)
Q Consensus 694 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 773 (1171)
+.. . . . ..+....
T Consensus 241 -----------------~~~-----------------------~------------------~---~--~~~~~~~---- 253 (506)
T PRK13549 241 -----------------GRE-----------------------L------------------T---A--LYPREPH---- 253 (506)
T ss_pred -----------------CcC-----------------------c------------------c---c--ccccccc----
Confidence 000 0 0 0 0000000
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCC-CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCEe
Q 001055 774 SNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFD 851 (1171)
Q Consensus 774 ~~~~~~~~~~~g~i~~~~vs~~y~~-~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p~~G~I~i~g~~ 851 (1171)
. +....++++||+++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 254 ----~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~ 326 (506)
T PRK13549 254 ----T---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326 (506)
T ss_pred ----C---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE
Confidence 0 01124899999999942 12369999999999999999999999999999999999999 599999999999
Q ss_pred cCCCCh-HHHhhheEEEcCCc---cccc-ccHHhhccCCC--CCCH-HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC
Q 001055 852 IAKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EHSD-ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 922 (1171)
Q Consensus 852 i~~~~~-~~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~--~~~~-~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~ 922 (1171)
+...+. ...++.++|+||++ .+|. .|+.+|+.+.. .... ..+........+.++++.+ +++ ...+....
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~ 404 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIA 404 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccc
Confidence 865443 34566799999996 3554 59999996421 1100 0000001112345566664 453 24566678
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
+|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++++.. ||++++|++|+++
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999865 47899999999999987 9999999999999
Q ss_pred EecChhHH
Q 001055 1001 EYDTPEEL 1008 (1171)
Q Consensus 1001 ~~g~~~el 1008 (1171)
..|+++++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 99988775
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=672.97 Aligned_cols=455 Identities=23% Similarity=0.381 Sum_probs=344.6
Q ss_pred CcEEEEeeEEEcCCC-CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCccce----------
Q 001055 161 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV---------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~-~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-----~~g~~~~---------- 224 (1171)
+.++++|++++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 369999999999632 135799999999999999999999999999999999999986 5665321
Q ss_pred -----e-cCcEEEEecCCC--CC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 225 -----I-RGTVAYVPQVSW--IF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 225 -----~-~~~i~~v~Q~~~--l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
. +..|||++|++. ++ ..|+.+|+.++. .... +++.++++..++.+... .......
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPH 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCc
Confidence 1 136999999985 44 469999986421 1111 23445566666543110 1123346
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.+...+ |+|+|+||||++++.. ||||++|++|++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999987775444 8999999999999875 799999999999
Q ss_pred EEecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhcc
Q 001055 366 KEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 445 (1171)
Q Consensus 366 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (1171)
++.|+++++..... . .
T Consensus 236 ~~~g~~~~~~~~~~-------------------------------------------~-----------~---------- 251 (529)
T PRK15134 236 VEQNRAATLFSAPT-------------------------------------------H-----------P---------- 251 (529)
T ss_pred EEeCCHHHHhhCCC-------------------------------------------C-----------H----------
Confidence 98887655421100 0 0
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 446 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 525 (1171)
Q Consensus 446 g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 525 (1171)
+.
T Consensus 252 ----------~~-------------------------------------------------------------------- 253 (529)
T PRK15134 252 ----------YT-------------------------------------------------------------------- 253 (529)
T ss_pred ----------HH--------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 526 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 605 (1171)
Q Consensus 526 ~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1171)
..+
T Consensus 254 -------------------------------------~~~---------------------------------------- 256 (529)
T PRK15134 254 -------------------------------------QKL---------------------------------------- 256 (529)
T ss_pred -------------------------------------HHH----------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 606 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 685 (1171)
Q Consensus 606 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1171)
+ . ..
T Consensus 257 ----------~------~----------~~-------------------------------------------------- 260 (529)
T PRK15134 257 ----------L------N----------SE-------------------------------------------------- 260 (529)
T ss_pred ----------H------H----------hC--------------------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 686 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 686 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
. +. . +
T Consensus 261 ---------------------------------------------------~-------------------~~----~-~ 265 (529)
T PRK15134 261 ---------------------------------------------------P-------------------SG----D-P 265 (529)
T ss_pred ---------------------------------------------------c-------------------cc----c-c
Confidence 0 00 0 0
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCC---------CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~---------~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
..+ . . +....++++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|
T Consensus 266 -~~~----~---~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 266 -VPL----P---E---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred -ccc----C---C---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 000 0 0 00113899999999952 12369999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEecCCCChHH---HhhheEEEcCCc--cccc-ccHHhhccCCC----C-CCHHHHHHHHHHhcHHHH
Q 001055 837 IVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPFS----E-HSDADLWEALERAHLKDA 905 (1171)
Q Consensus 837 ~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~--~lf~-~tv~~nl~~~~----~-~~~~~i~~~l~~~~~~~~ 905 (1171)
++ |++|+|.++|.++...+... +|++++|+||++ .++. .|+++|+.+.. . ....+. ...+.++
T Consensus 335 l~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~ 408 (529)
T PRK15134 335 LI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAV 408 (529)
T ss_pred cC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHH
Confidence 98 58999999999987665443 467899999998 3665 49999986421 0 111111 1123344
Q ss_pred HHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecCh
Q 001055 906 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRL 982 (1171)
Q Consensus 906 i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~ 982 (1171)
++.+ |+. ...+....+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.|+++.+ ++|||+||||+
T Consensus 409 l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 409 MEEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 5543 554 345667789999999999999999999999999999999999999999999998753 78999999999
Q ss_pred hhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 983 NTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 983 ~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+++.. ||+|++|++|+|++.|+++++++.+
T Consensus 487 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 487 HVVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 99887 9999999999999999999997654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=668.89 Aligned_cols=446 Identities=23% Similarity=0.340 Sum_probs=338.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 4 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 3699999999996 357999999999999999999999999999999999999999886532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC-----C-----CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA-----F-----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.|+|++|++.++ ..||+||+.++.. . +. +++.+.++..++.+. .+....+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG 149 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSIS 149 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHH
Confidence 599999999876 5799999987531 0 11 122233344333221 23445689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|++|||||||++||+.+++++++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|++
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999877765568999999999999875 799999999999887765
Q ss_pred hHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHH
Q 001055 372 EDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFK 451 (1171)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 451 (1171)
+++.... ...
T Consensus 230 ~~~~~~~-----~~~----------------------------------------------------------------- 239 (510)
T PRK09700 230 SDVSNDD-----IVR----------------------------------------------------------------- 239 (510)
T ss_pred hhCCHHH-----HHH-----------------------------------------------------------------
Confidence 5432100 000
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 452 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSL 531 (1171)
Q Consensus 452 ~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 531 (1171)
T Consensus 240 -------------------------------------------------------------------------------- 239 (510)
T PRK09700 240 -------------------------------------------------------------------------------- 239 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 532 YAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPL 611 (1171)
Q Consensus 532 ~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (1171)
++
T Consensus 240 --------------------------------~~---------------------------------------------- 241 (510)
T PRK09700 240 --------------------------------LM---------------------------------------------- 241 (510)
T ss_pred --------------------------------Hh----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 612 LLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR 691 (1171)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1171)
+ .+.
T Consensus 242 ----------~-------------~~~----------------------------------------------------- 245 (510)
T PRK09700 242 ----------V-------------GRE----------------------------------------------------- 245 (510)
T ss_pred ----------c-------------CCC-----------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 001055 692 LEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV 771 (1171)
Q Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~ 771 (1171)
. . .+ .......
T Consensus 246 ---------------------------------------------~---------------~--~~---~~~~~~~---- 256 (510)
T PRK09700 246 ---------------------------------------------L---------------Q--NR---FNAMKEN---- 256 (510)
T ss_pred ---------------------------------------------c---------------c--cc---ccccccc----
Confidence 0 0 00 0000000
Q ss_pred cCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 001055 772 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 851 (1171)
Q Consensus 772 ~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~ 851 (1171)
.. .. .....++++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 257 --~~-~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 257 --VS-NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred --cc-cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 00 00 0112499999999763 38999999999999999999999999999999999999999999999999
Q ss_pred cCCCCh-HHHhhheEEEcCCc---ccccc-cHHhhccCCCCCC----HH--HH-HHHHHHhcHHHHHHHccCCcc-hhhh
Q 001055 852 IAKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSEHS----DA--DL-WEALERAHLKDAIRRNSLGLD-AQVS 918 (1171)
Q Consensus 852 i~~~~~-~~~r~~i~~v~Q~~---~lf~~-tv~~nl~~~~~~~----~~--~i-~~~l~~~~~~~~i~~lp~gl~-~~~~ 918 (1171)
+...+. ..+|+.|||+||++ .+|.. |+++|+.+..... .. .. ........+.++++.+ |+. ...+
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~ 404 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVN 404 (510)
T ss_pred CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCcc
Confidence 865543 34567899999984 46654 9999986431100 00 00 0000112234555554 554 3456
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
....+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++.+.. ||++++|++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 6678899999999999999999999999999999999999999999998864 47899999999999877 999999999
Q ss_pred cEEEEecCh
Q 001055 997 GRVLEYDTP 1005 (1171)
Q Consensus 997 G~i~~~g~~ 1005 (1171)
|++++.++.
T Consensus 485 G~i~~~~~~ 493 (510)
T PRK09700 485 GRLTQILTN 493 (510)
T ss_pred CEEEEEecC
Confidence 999988765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=670.31 Aligned_cols=438 Identities=27% Similarity=0.435 Sum_probs=337.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCCcccee---------------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAVI--------------- 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~--~~~~g~~~~~--------------- 225 (1171)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|++ +|++|.+...
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 47899999995 257999999999999999999999999999999999997 6887754321
Q ss_pred ------------------------------cCcEEEEecC-CCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcC
Q 001055 226 ------------------------------RGTVAYVPQV-SWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTS 266 (1171)
Q Consensus 226 ------------------------------~~~i~~v~Q~-~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~ 266 (1171)
+..++|++|+ +.++ ..||+||+.++. ..+. +++.+.++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 2348999998 5666 579999998742 1221 23445566666
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEc
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 345 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vt 345 (1171)
+.+..+. ...+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6544333 3368999999999999999999999999999999999999999997776543 489999999
Q ss_pred CCcchhhh-cCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCcc
Q 001055 346 NQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 424 (1171)
Q Consensus 346 H~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1171)
||++++.. ||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 99999875 899999999998876654322100
Q ss_pred ccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHH
Q 001055 425 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 504 (1171)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 504 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (520)
T TIGR03269 260 -------------------------------------------------------------------------------- 259 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHH
Q 001055 505 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 584 (1171)
Q Consensus 505 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~ 584 (1171)
..
T Consensus 260 ------------------------------------------------------------~~------------------ 261 (520)
T TIGR03269 260 ------------------------------------------------------------FM------------------ 261 (520)
T ss_pred ------------------------------------------------------------HH------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHH
Q 001055 585 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 664 (1171)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~ 664 (1171)
....
T Consensus 262 ------------------------------------------~~~~---------------------------------- 265 (520)
T TIGR03269 262 ------------------------------------------EGVS---------------------------------- 265 (520)
T ss_pred ------------------------------------------hhch----------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 665 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 744 (1171)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 744 (1171)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCC---CCCCcceeeeEEEcCCCEEEEEC
Q 001055 745 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 821 (1171)
Q Consensus 745 ~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~---~~~~~l~~vs~~i~~Ge~v~ivG 821 (1171)
+.. . +...+ . ....++++||+++|++ +..++|+|+||+|++||++||+|
T Consensus 266 ------------~~~---~-~~~~~----~--------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 266 ------------EVE---K-ECEVE----V--------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred ------------hhc---c-ccccC----C--------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 000 0 00000 0 0124999999999952 22369999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEEC-CEe---cCCCCh---HHHhhheEEEcCCcccccc-cHHhhccCCC--CCCHH
Q 001055 822 RTGAGKSSMLNTLFRIVELERGRILID-GFD---IAKFGL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS--EHSDA 891 (1171)
Q Consensus 822 ~nGsGKSTLl~~l~g~~~p~~G~I~i~-g~~---i~~~~~---~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~ 891 (1171)
|||||||||+++|+|+++|++|+|.++ |.+ +...++ ..+|++|+|+||++.+|.. |+.+|+.+.. .....
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999995 643 333322 2456789999999988864 9999996311 11111
Q ss_pred HHHHHHHHhcHHHHHHHccCCcch-----hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 001055 892 DLWEALERAHLKDAIRRNSLGLDA-----QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966 (1171)
Q Consensus 892 ~i~~~l~~~~~~~~i~~lp~gl~~-----~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l 966 (1171)
+. ...+.++++.+ |+.. ..+....+|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|
T Consensus 398 ~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 398 LA-----RMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HH-----HHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 10 11233444443 3432 356667889999999999999999999999999999999999999999999
Q ss_pred HHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 967 REEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 967 ~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+++. .+.|||+||||++++.. ||+|++|++|++++.|+++++.+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8875 37899999999999987 99999999999999999988754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-68 Score=667.33 Aligned_cols=542 Identities=24% Similarity=0.359 Sum_probs=413.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
.+...+++.++...+....|.+....+|..........+ ...++.++.++..++.+++.++......+...++|..++
T Consensus 162 ~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 241 (711)
T TIGR00958 162 WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLF 241 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666667777777666653322211111 223344455566677788888889999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
++++++|+.||++++.|++++|+++|++.++..+...+..++..+..++..+++++.+++...++++..+++.+.+...+
T Consensus 242 ~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~ 321 (711)
T TIGR00958 242 RSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVF 321 (711)
T ss_pred HHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777777777777776666666666655444433333333344445
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA---NRWLAIRLEIVGGLM 699 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 699 (1171)
.+..++..+......+...+.+.|.++|+++||+|+.++++.+.+.+..+...+........ ..|....+..+..++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (711)
T TIGR00958 322 GKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVL 401 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455555555556667788999999999999999999988777776666544433222111 122222222222223
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
++..+.+.+.. +..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+.. .. ..
T Consensus 402 il~~g~~lv~~-g~it-----~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~ 471 (711)
T TIGR00958 402 VLYYGGQLVLT-GKVS-----SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LA 471 (711)
T ss_pred HHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CC
Confidence 33333333332 2221 122223334444566666667777778888899999999998776543211 11 11
Q ss_pred CCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 780 GWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
.++..+.|+++||+|+|++. .+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+
T Consensus 472 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 472 PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 12335679999999999753 24799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.+|++|+||||+|.+|++||+|||.+.. +.++++++++++.++++++++++|.|+||.+++.|.+|||||||||+||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764 467899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
++++|+|||||||||+||+++++.+++ . ...+++|+|+||||++++..||+|++|++|+|++.|+|+||+++. +.|.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchH
Confidence 999999999999999999999999999 3 334689999999999999999999999999999999999999864 4666
Q ss_pred HH
Q 001055 1018 KM 1019 (1171)
Q Consensus 1018 ~~ 1019 (1171)
++
T Consensus 709 ~l 710 (711)
T TIGR00958 709 HL 710 (711)
T ss_pred hc
Confidence 54
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=669.54 Aligned_cols=540 Identities=24% Similarity=0.348 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccccCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
..+++.++...+....|.++...+|.......... .+...+.++.++..++.+++.++....+.+...+++..+++++
T Consensus 158 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 237 (710)
T TIGR03796 158 YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHI 237 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566667777766665332222111 1223344445567788889999999999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 625 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 625 (1171)
+++|+.+|+++++|++++|+++| ..+.+.+...+...+..++.++..+++++++++...++++.++++.+.+...+.+.
T Consensus 238 l~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 316 (710)
T TIGR03796 238 LRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRR 316 (710)
T ss_pred HcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 56776665555555555555555555555555554444444443444444444444
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 626 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 702 (1171)
Q Consensus 626 ~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ 702 (1171)
.++..+......+...+.+.|.++|+.+||+++.++.+.+.+.+......+..........+......+ +..+++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 396 (710)
T TIGR03796 317 RVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV 396 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556678889999999999999999998887777665554444333322222222222222 22222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCC--C-C
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES--N-R 776 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~--~-~ 776 (1171)
++.+.+.. +.. ++|.++++ ...+..++..+......+.....+.+|+.++++.+++.+..... . .
T Consensus 397 ~g~~~v~~-g~l--------t~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~ 467 (710)
T TIGR03796 397 VGGLRVME-GQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG 467 (710)
T ss_pred HHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccc
Confidence 23333332 222 23333333 33444555666666777788899999999999877654321100 0 0
Q ss_pred CCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001055 777 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 856 (1171)
Q Consensus 777 ~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~ 856 (1171)
..+.++..+.|+++||+|+|++..+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||+|+++++
T Consensus 468 ~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 547 (710)
T TIGR03796 468 SEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP 547 (710)
T ss_pred cccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC
Confidence 00102235679999999999865567999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+.++|++||||||+|.+|++||+|||.++. +.++++++++++.++++++++++|.|++|.++++|.+|||||||||+||
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998765 4689999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
|||+++|+|||||||||+||+++++.+.+.|++ .++|+|+||||++++..||||++|++|+|++.|+|+||+++ .+.
T Consensus 628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~ 704 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGA 704 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCc
Confidence 999999999999999999999999999999987 58999999999999999999999999999999999999976 456
Q ss_pred HHHHH
Q 001055 1016 FSKMV 1020 (1171)
Q Consensus 1016 ~~~~~ 1020 (1171)
|.+++
T Consensus 705 y~~l~ 709 (710)
T TIGR03796 705 YARLI 709 (710)
T ss_pred HHHHh
Confidence 76654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=651.80 Aligned_cols=542 Identities=25% Similarity=0.388 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY----NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (1171)
+.+.+++.++...+....|.++...+|............ ..++.++.++..++.+++.++....+.+...++|..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 104 (592)
T PRK10790 25 LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDV 104 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666667777776666432211111111 1223333445566778888888999999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621 (1171)
Q Consensus 542 ~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 621 (1171)
++++++.|+.+|++.+.|++++|+++|++.++..+...+..++..+..++..+++++++.+...++++..+++.+.....
T Consensus 105 ~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~ 184 (592)
T PRK10790 105 MDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVI 184 (592)
T ss_pred HHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877776666666665555555555555544333322222222222333
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
Q 001055 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLM- 699 (1171)
Q Consensus 622 ~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~- 699 (1171)
+.+..+...+......+....++.|.++|+.++|+|+.++++.+.+.+..+...+..........+. .....++..++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (592)
T PRK10790 185 YQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALIL 264 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455667888999999999999999999888777766555444333222211111 11111111111
Q ss_pred --HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCC
Q 001055 700 --IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 777 (1171)
Q Consensus 700 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 777 (1171)
+++...+ + ..+..+ .+.+..++.+...+..++..+.......+....+.+|+.++++.+++.... ..
T Consensus 265 ~~~~~~~~~-~-~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~- 333 (592)
T PRK10790 265 CGLLMLFGF-S-ASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DD- 333 (592)
T ss_pred HHHHHHHHH-H-HCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---Cc-
Confidence 1111111 1 122111 112222333444556666677777778888999999999998765432111 11
Q ss_pred CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 778 ~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
.++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|++++++
T Consensus 334 --~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 334 --RPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH 410 (592)
T ss_pred --cCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH
Confidence 11234569999999999754 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+.+|++|+||||+|.+|++|+++||.++.+.++++++++++.++++++++++|.|+||.+++.|.+||||||||++||||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred HHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+||+++. +.|.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~ 569 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYW 569 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHH
Confidence 999999999999999999999999999999987889999999999999999999999999999999999999874 6788
Q ss_pred HHHHh
Q 001055 1018 KMVQS 1022 (1171)
Q Consensus 1018 ~~~~~ 1022 (1171)
+++..
T Consensus 570 ~l~~~ 574 (592)
T PRK10790 570 QMYQL 574 (592)
T ss_pred HHHHH
Confidence 77764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=648.94 Aligned_cols=497 Identities=24% Similarity=0.349 Sum_probs=390.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 001055 508 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 587 (1171)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~ 587 (1171)
+.++.++..++.++..++....+.+...++|.+++++++++|+.+|++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888889999999999999999999999999999999999999999999999988877777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHH
Q 001055 588 SQLLSTFVLIGIVSTMSLWAIMPLLL-LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 666 (1171)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~ 666 (1171)
+.++..++.++++.+...++++.+++ ++.....++.+..+...+......+.+.+.+.|.++|++++|+|+.++++.+.
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 66666666666665544443322222 22222233344444444444556677888999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH----HHHHHHH
Q 001055 667 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL----MIWLTATFAVVQNGSAENQEAFASTMGLLLSYA----LNITSLL 738 (1171)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~----~~~~~~~ 738 (1171)
+.+..+...+..........+......++..+ ++++++ +.+ .+.. +.|.++++. .....++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~-~~~--~g~~--------t~g~l~a~~~~~~~~~~~~~ 294 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAA-GGV--GGNA--------QPGALIALFVFAALAAFEAL 294 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--cccc--------chhHHHHHHHHHHHHHHHHH
Confidence 87776665554444333333333333322222 222222 212 1211 222222222 2223455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEE
Q 001055 739 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVG 818 (1171)
Q Consensus 739 ~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ 818 (1171)
.++............+.+|+.++++.+++.+.. ..... .+..+.|+++||+|+|+++.+++|+|+||+|+|||++|
T Consensus 295 ~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~a 370 (574)
T PRK11160 295 MPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA 370 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEE
Confidence 566666677778889999999998766542111 01111 12345799999999997643479999999999999999
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHH
Q 001055 819 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEAL 897 (1171)
Q Consensus 819 ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l 897 (1171)
|+||||||||||+++|+|+++|++|+|.+||+++++++..++|++|+||||+|.+|++|++|||.+.. +.+++++++++
T Consensus 371 ivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al 450 (574)
T PRK11160 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVL 450 (574)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998764 46889999999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEE
Q 001055 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 977 (1171)
Q Consensus 898 ~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~ 977 (1171)
+.+++++++++ |.|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|.+..+++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 978 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 978 vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
||||++++..||+|++|++|++++.|+|+||+++ ++.|.+++.
T Consensus 530 itHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred EecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999999999999999999999976 457877664
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=668.35 Aligned_cols=540 Identities=22% Similarity=0.340 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCC-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+..++++.++...+....|.++..+.|........ ... +...+.++.+...++.+++.++....+.+...+++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (708)
T TIGR01193 158 IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIK 237 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666677777887777754332211 111 2223334455567788889999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.||+++++|++++|++ |...+.+.+.......+..+...+..+++++++.+...++++.++++++.+...+.
T Consensus 238 ~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 316 (708)
T TIGR01193 238 HLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFK 316 (708)
T ss_pred HHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 88887766554444444444444444444444444443333333333333444455
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW---LAIRLEIVGGLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 700 (1171)
+..++..+......+...+.+.|+++|+.+||+++.++++.+.+.+......+..........+ ....+..+..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 396 (708)
T TIGR01193 317 RTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVI 396 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666677888999999999999999999888777766555444333322222111 1222222233333
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 777 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 777 (1171)
++++.+.+.. +.. ++|.++++. ..+..++..+.......+....+.+|+.++++.++|.+... ..
T Consensus 397 l~~g~~lv~~-g~l--------s~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~ 464 (708)
T TIGR01193 397 LWTGAYLVMR-GKL--------TLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KR 464 (708)
T ss_pred HHHHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cc
Confidence 3333343332 222 233333333 34445555666666777888899999999998776543211 10
Q ss_pred CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 778 ~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
...++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|++||+|++++++
T Consensus 465 ~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 543 (708)
T TIGR01193 465 TELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543 (708)
T ss_pred cCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCH
Confidence 1112335679999999999743 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCC--CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~--~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+++|++||||||+|.+|++||+|||.++ .+.++++++++++.++++++++++|.|++|.++++|.+||||||||++||
T Consensus 544 ~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623 (708)
T ss_pred HHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999976 34688999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
||++++|+|||||||||+||+++++.+++.|++. +++|+|+||||++.+..||+|++|++|++++.|+|+|++++ .+.
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~ 701 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGF 701 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCc
Confidence 9999999999999999999999999999999985 68999999999999999999999999999999999999986 456
Q ss_pred HHHHHH
Q 001055 1016 FSKMVQ 1021 (1171)
Q Consensus 1016 ~~~~~~ 1021 (1171)
|.++++
T Consensus 702 y~~l~~ 707 (708)
T TIGR01193 702 YASLIH 707 (708)
T ss_pred HHHHhh
Confidence 776653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-70 Score=663.33 Aligned_cols=441 Identities=21% Similarity=0.335 Sum_probs=337.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 57999999999999999999999999999999999999999886532 1245
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC-------CHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSAF-------EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
++|++|++.++ ..||+||+.++... +.. ++.+.++..++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 99999998776 57999999886321 111 22233333333221 233456899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
|+|||||+.+|++|||||||++||+.+++++++.+.+....|+|+|+||||++++.. ||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999998777665568999999999999875 7999999999998766543211
Q ss_pred hcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHH
Q 001055 376 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 455 (1171)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 455 (1171)
... ..
T Consensus 230 ~~~-----~~---------------------------------------------------------------------- 234 (501)
T PRK10762 230 EDS-----LI---------------------------------------------------------------------- 234 (501)
T ss_pred HHH-----HH----------------------------------------------------------------------
Confidence 000 00
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 456 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535 (1171)
Q Consensus 456 y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1171)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T PRK10762 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 615 (1171)
Q Consensus 536 ~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 615 (1171)
..+
T Consensus 235 ---------------------------~~~-------------------------------------------------- 237 (501)
T PRK10762 235 ---------------------------EMM-------------------------------------------------- 237 (501)
T ss_pred ---------------------------HHh--------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 616 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 695 (1171)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1171)
+
T Consensus 238 ~------------------------------------------------------------------------------- 238 (501)
T PRK10762 238 V------------------------------------------------------------------------------- 238 (501)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 696 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 696 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
.. +.. ..++..+
T Consensus 239 ---------------~~--------------------------------------------~~~---~~~~~~~------ 250 (501)
T PRK10762 239 ---------------GR--------------------------------------------KLE---DQYPRLD------ 250 (501)
T ss_pred ---------------CC--------------------------------------------Ccc---ccccccc------
Confidence 00 000 0000000
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
.+ +....++++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 251 -~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~ 319 (501)
T PRK10762 251 -KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR 319 (501)
T ss_pred -cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 00 0112489999984 379999999999999999999999999999999999999999999999998766
Q ss_pred ChH-HHhhheEEEcCCc---cccc-ccHHhhccCCCC--CCH--HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCC
Q 001055 856 GLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD--ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 925 (1171)
Q Consensus 856 ~~~-~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~~--~~~--~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LS 925 (1171)
++. .+|+++||+||++ .++. .|+++|+.+... ... ...........+.++++.+ |+. ...++...+||
T Consensus 320 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 397 (501)
T PRK10762 320 SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF--NIKTPSMEQAIGLLS 397 (501)
T ss_pred CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc--CCCCCCccCchhhCC
Confidence 543 3567899999997 3554 599999964210 000 0000000112244555553 453 34566778899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||||+|||||+.+|++|||||||++||+.+.+.+++.|+++. +++|||++|||++++.. ||+|++|++|+++..|
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999875 47899999999999887 9999999999999999
Q ss_pred ChhHH
Q 001055 1004 TPEEL 1008 (1171)
Q Consensus 1004 ~~~el 1008 (1171)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=660.25 Aligned_cols=450 Identities=23% Similarity=0.398 Sum_probs=343.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-------------cC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 227 (1171)
+.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 579999999999999999999999999999999999999998865321 13
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCC---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
.+||++|++.++ ..||+||+.++.... .++..+.++..++... ......+|||||||||+|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHH
Confidence 599999999876 579999999874322 1334445555554322 2334468999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcchHHH
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQ 382 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 382 (1171)
+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||+|++|++|++++.|+++++..... ..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~ 234 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDI-IQ 234 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHH-HH
Confidence 99999999999999999999999999877765568999999999999865 89999999999998887765432100 00
Q ss_pred HHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhh
Q 001055 383 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGG 462 (1171)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~ 462 (1171)
.+. . .. . .
T Consensus 235 ~~~----------~---~~--~-----~---------------------------------------------------- 242 (510)
T PRK15439 235 AIT----------P---AA--R-----E---------------------------------------------------- 242 (510)
T ss_pred HHh----------C---cc--c-----c----------------------------------------------------
Confidence 000 0 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 463 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
T Consensus 243 -------------------------------------------------------------------------------- 242 (510)
T PRK15439 243 -------------------------------------------------------------------------------- 242 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
. .+
T Consensus 243 ------------~---------------~~-------------------------------------------------- 245 (510)
T PRK15439 243 ------------K---------------SL-------------------------------------------------- 245 (510)
T ss_pred ------------c---------------cc--------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 702 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 702 (1171)
.
T Consensus 246 -------------~------------------------------------------------------------------ 246 (510)
T PRK15439 246 -------------S------------------------------------------------------------------ 246 (510)
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCC
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 782 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 782 (1171)
..++.. ...+...+ . .+ +
T Consensus 247 ---------------------------------------------------~~~~~~--~~~~~~~~----~--~~---~ 264 (510)
T PRK15439 247 ---------------------------------------------------ASQKLW--LELPGNRR----Q--QA---A 264 (510)
T ss_pred ---------------------------------------------------cccccc--cccccccc----c--cC---C
Confidence 000000 00000000 0 00 0
Q ss_pred CCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-Hh
Q 001055 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 861 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r 861 (1171)
.+..++++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 112489999983 2699999999999999999999999999999999999999999999999998766554 45
Q ss_pred hheEEEcCCc---cccc-ccHHhhccCC--C--CC--CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001055 862 KILGIIPQSP---VLFS-GTVRFNLDPF--S--EH--SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 862 ~~i~~v~Q~~---~lf~-~tv~~nl~~~--~--~~--~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkq 930 (1171)
+.|+|+||++ .+|. .|+.+|+... . .. .... ....+.++++.+ |+. ...+....+|||||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHc--CCCCCCccCccccCCcHHHH
Confidence 6799999985 3665 4999998421 0 00 1111 112244556554 554 4466777889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||+|||||+.+|+||||||||+|||+.+.+.+++.|+++. +++|||+||||++++.. ||++++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999875 47899999999999987 999999999999999988776
Q ss_pred h
Q 001055 1009 L 1009 (1171)
Q Consensus 1009 ~ 1009 (1171)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=643.59 Aligned_cols=487 Identities=25% Similarity=0.349 Sum_probs=342.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecC-cEEEEecCCCCC-
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIF- 239 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~-~i~~v~Q~~~l~- 239 (1171)
.|.++|++++|+ ++++|+++||++.+|+++||||+||||||||||+|+|...|++|.+....+ +|||++|++.+.
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 589999999995 478999999999999999999999999999999999999999988776655 799999999997
Q ss_pred cccHHHHHhcCCCCCH---HHHHHHHHH---------cCc-------------hHHHhcCCCCCccccCCCCCccChHHH
Q 001055 240 NATVRDNILFGSAFEP---ARYEKAIDV---------TSL-------------QHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 240 ~~Tv~eni~~g~~~~~---~~~~~~~~~---------~~l-------------~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
..||.+.+.-+...-. .+++.+... ..+ .+....+.+...+.......+||||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 5699999987632100 111111100 000 011111122222222455689999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE-EecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~ 372 (1171)
.||+|||||+.+||+|||||||||||.+++.|+.++|... +| |+|+||||++||+. |++|+.++.|++. +.|+++
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 9999999999999999999999999999999999988654 35 99999999999997 6999999999764 577777
Q ss_pred HHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHH
Q 001055 373 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 452 (1171)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 452 (1171)
.+....+..........
T Consensus 237 ~~~~~r~~~~~~~~~~~--------------------------------------------------------------- 253 (530)
T COG0488 237 SYLEQKAERLRQEAAAY--------------------------------------------------------------- 253 (530)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 66543221110000000
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 453 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 532 (1171)
Q Consensus 453 l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 532 (1171)
T Consensus 254 -------------------------------------------------------------------------------- 253 (530)
T COG0488 254 -------------------------------------------------------------------------------- 253 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 533 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 612 (1171)
Q Consensus 533 ~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 612 (1171)
T Consensus 254 -------------------------------------------------------------------------------- 253 (530)
T COG0488 254 -------------------------------------------------------------------------------- 253 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 613 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 692 (1171)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1171)
.+..++ ..+..++++....-+.-
T Consensus 254 ----------~~~~~~------------~~~~~~~i~r~~~~~~~----------------------------------- 276 (530)
T COG0488 254 ----------EKQQKE------------LAKEQEWIRRGKAAASK----------------------------------- 276 (530)
T ss_pred ----------HHHHHH------------HHHHHHHHHHHHhccch-----------------------------------
Confidence 000000 00000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCCc
Q 001055 693 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPSEAPL 770 (1171)
Q Consensus 693 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~--~~~~~e~~~ 770 (1171)
....+.....++++... ...+.....
T Consensus 277 ----------------------------------------------------~k~a~sr~k~l~k~~~~~~~~~~~~~~~ 304 (530)
T COG0488 277 ----------------------------------------------------AKKAKSRIKRLEKLEARLAEERPVEEGK 304 (530)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 00000001111122110 001110000
Q ss_pred ccCCCCCCCC-CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 771 VIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 771 ~~~~~~~~~~-~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
...-..+++. ...+..++++|++++|++. +++++++||.|.+|+++||+||||+|||||+++|+|...|.+|+|.++-
T Consensus 305 ~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~ 383 (530)
T COG0488 305 PLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE 383 (530)
T ss_pred cceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence 0000001111 1223469999999999765 4799999999999999999999999999999999999999999999872
Q ss_pred EecCCCChHHHhhheEEEcCCc-cccc-ccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001055 850 FDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926 (1171)
Q Consensus 850 ~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg 926 (1171)
.-++||++|+. .++. .|+.+++.... ...+.+++..|.+.++.. +. +......|||
T Consensus 384 -----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~---------~~-~~~~v~~LSG 442 (530)
T COG0488 384 -----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG---------ED-QEKPVGVLSG 442 (530)
T ss_pred -----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh---------HH-HhCchhhcCH
Confidence 13699999998 3443 38888886543 223555666666544432 22 2455678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe-cC
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DT 1004 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~ 1004 (1171)
|||.||.||+.++.+|++||||||||+||.++...+.++|.+ .++|||+||||.++++. |++|+++++ ++..+ |+
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999999999999999998 68899999999999999 999999999 88877 99
Q ss_pred hhHHhhc
Q 001055 1005 PEELLSN 1011 (1171)
Q Consensus 1005 ~~el~~~ 1011 (1171)
++++.+.
T Consensus 520 y~~y~~~ 526 (530)
T COG0488 520 YEDYLEQ 526 (530)
T ss_pred HHHHHHh
Confidence 9988754
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-69 Score=664.65 Aligned_cols=513 Identities=23% Similarity=0.343 Sum_probs=402.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHH
Q 001055 502 LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 581 (1171)
Q Consensus 502 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~ 581 (1171)
.-+.+.|..++++..+..++...++...+.|...++|++++..+||+++.|||.+..|++..|+++|+..+++.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 34555677777888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHH
Q 001055 582 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 661 (1171)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~ 661 (1171)
.++..+..++..+++.++..|....+++++.++....-..+.+........+....+..-+...|++.+++|+.+|+.++
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 88888888888888877776655544443333222221111111111222222233344567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Q 001055 662 RMADINGKSMDKNIRYTLVNMGANR----WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSL 737 (1171)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 737 (1171)
+..+++.+.+....+.......... +..+++....++.+|+++.+.... ..+....+....+. +.....
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~--~~~~g~v~~v~~~v-----l~g~~s 303 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNG--GYNGGDVITVFFSV-----LIGGMS 303 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCceEEEEEeeh-----hhhhhh
Confidence 9999999988888877665433221 122223333445555554444331 11111111111111 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCC-CCcceeeeEEEcCCCE
Q 001055 738 LTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDK 816 (1171)
Q Consensus 738 ~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~ 816 (1171)
++........+.++..+..++.+.++..+.......... ......|.|+|+||+|+|+.+. .++|+|+||+|++|+.
T Consensus 304 Lgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~ 381 (1228)
T KOG0055|consen 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT 381 (1228)
T ss_pred hhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCE
Confidence 222333334455667788888887765443211111111 1223468899999999998652 3799999999999999
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHH
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWE 895 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~ 895 (1171)
|||||||||||||++++|.|+|+|++|+|++||.|+++++.+++|++||+|.|+|.||++||+||+.+.. +.+++++.+
T Consensus 382 valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~ 461 (1228)
T KOG0055|consen 382 VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEE 461 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 468999999
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEE
Q 001055 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM 975 (1171)
Q Consensus 896 ~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tv 975 (1171)
+++.+++++|+..+|+|++|.++++|.+||||||||+||||||+++|+|||||||||+||+++++.++++|++..+|+|.
T Consensus 462 a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTT 541 (1228)
T KOG0055|consen 462 AAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541 (1228)
T ss_pred HHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhc
Q 001055 976 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 976 i~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
|+||||++++++||+|+||++|+|+|.|+|+||++.. +.|+++++.+.
T Consensus 542 ivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred EEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 9999999999999999999999999999999999987 89999987653
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-69 Score=656.61 Aligned_cols=201 Identities=17% Similarity=0.338 Sum_probs=169.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +++|
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 59999999999753 6999999999999999999999999999999999999999999999872 4799
Q ss_pred EEcCCcc--ccc-ccHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV--LFS-GTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~--lf~-~tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++. ++. .|+++|+..+.. ..++++.+.++..++. ....+....+||||||||++|||||+.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999974 443 599999864321 1233344444443331 123455667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~~ 1011 (1171)
+|+||||||||++||+.+...+++.|++. ++|||+||||++++.. ||+|++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999987 9999999999998 67999888754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=647.66 Aligned_cols=501 Identities=24% Similarity=0.353 Sum_probs=396.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 001055 509 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 588 (1171)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~ 588 (1171)
.++.++..++.+++.++....+.+....++..+++++++.|..+|++.+.|++++|+++|+..+...+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888888899999999999999999999999999999999999999999998877766666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHH
Q 001055 589 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 668 (1171)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 668 (1171)
.++..+++++++.+...++++.++++.+++.....+..++..+......+.+...+.|.++|+.++|+|+.++.+.+.+.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 66666666666655544443333333333344444444444444455567788899999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 669 KSMDKNIRYTLVNMGANRWLAIRLEIVGG---LMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 745 (1171)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 745 (1171)
+..+...+..........+......++.. +++++++.+.+.. +..+ .+.+..++.+...+..++..+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~-g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~ 305 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM-DTLT-----AGTITVVFSSMIALMRPLKSLTNVN 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655544433333333333333222 2222222233332 2221 1222233444445566666777777
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCC
Q 001055 746 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 825 (1171)
Q Consensus 746 ~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGs 825 (1171)
...+....+.+|+.++.+.+++.+.. ... ..+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+|||
T Consensus 306 ~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGs 380 (582)
T PRK11176 306 AQFQRGMAACQTLFAILDLEQEKDEG---KRV--IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGS 380 (582)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---CcC--CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCC
Confidence 77888889999999988766542211 111 1123456999999999976545799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHH
Q 001055 826 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLK 903 (1171)
Q Consensus 826 GKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~ 903 (1171)
|||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||++.+|++|+++||.++. ..++++++++++.++++
T Consensus 381 GKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~ 460 (582)
T PRK11176 381 GKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460 (582)
T ss_pred CHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999998753 36899999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChh
Q 001055 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 983 (1171)
Q Consensus 904 ~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~ 983 (1171)
++++++|.|+||.+++.|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++
T Consensus 461 ~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred hhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 984 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 984 ~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
.+..||+|++|++|+|++.|+|++++++. +.|++++.
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~ 577 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHK 577 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHH
Confidence 99999999999999999999999999874 56777765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-67 Score=603.76 Aligned_cols=508 Identities=24% Similarity=0.329 Sum_probs=407.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHH
Q 001055 505 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 584 (1171)
Q Consensus 505 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~ 584 (1171)
...+.++.+...++...+.......+.++...+|+.+++++.+++..+-...++|++.+.++..++.++.++..+++..+
T Consensus 43 ~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~ 122 (559)
T COG4988 43 LILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMF 122 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567777888888888899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHH
Q 001055 585 GQVSQLLSTFVLIGIVSTMS---LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 661 (1171)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~ 661 (1171)
...+..+..++.+++..+.. +++.+|++++++.+ .....+...+..-..-..+.++|.+.++|+.|+|.|+..+
T Consensus 123 ~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~ 199 (559)
T COG4988 123 LSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTE 199 (559)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccH
Confidence 87777766666666665543 34455665554433 2333333334444555678899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001055 662 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 741 (1171)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 741 (1171)
...+...+......+.++.........++.++++..+.+.+++.+..+.--..+....+.+.. ++..+.-+..++..+
T Consensus 200 ~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~--~LiLAPEff~PlR~l 277 (559)
T COG4988 200 ATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLF--VLILAPEFFQPLRDL 277 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHH--HHHHhHHHHHHHHHH
Confidence 888887777777777777666666667777777766655555444332211001111122111 122223345555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEEC
Q 001055 742 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 821 (1171)
Q Consensus 742 ~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG 821 (1171)
...+....+...+.+.+..+.+.|.+.+...+. ....+.....++++|++++|+++. ++++|+||++++|+++||||
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~--~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG 354 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGSGEK--AEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVG 354 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc--cccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEEC
Confidence 666666667778888888888776654322111 111122233466679999998764 79999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHh
Q 001055 822 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERA 900 (1171)
Q Consensus 822 ~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~ 900 (1171)
+||||||||+++|+|+++|++|+|.+||++..+++...+|+++++|||+|.+|++|+||||.++.+ .+++++.++++.+
T Consensus 355 ~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a 434 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434 (559)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998765 6899999999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEec
Q 001055 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 901 ~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH 980 (1171)
++.++++. |.|+|+.++++|..|||||+|||+|||||+++++++|+||||++||.+|++.|.+.|.++.+++|||+|||
T Consensus 435 ~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itH 513 (559)
T COG4988 435 GLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITH 513 (559)
T ss_pred cHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 981 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 981 ~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|++.+.+||+|+||++|++++.|+|++|.++ .+.|++++..
T Consensus 514 rl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~ 554 (559)
T COG4988 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ 554 (559)
T ss_pred ChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence 9999999999999999999999999999876 4578877765
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-68 Score=659.56 Aligned_cols=199 Identities=23% Similarity=0.374 Sum_probs=164.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 59999999999753 6999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCc--cccc-ccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSP--VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~--~lf~-~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++ .++. .|+.+++.... ...+..+. +++..+ ++. .........|||||||||+|||+|+.
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLR---------DYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHH---------HHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999985 2333 37777653211 11122233 344443 343 23455667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 1010 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~ 1010 (1171)
+|+||||||||++||+.+...+.+.|.++ ++|||+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 4699999999999987 9999999999998 6699999853
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=658.85 Aligned_cols=445 Identities=21% Similarity=0.304 Sum_probs=335.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 46999999999999999999999999999999999999999886532 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC------CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
.|+|++|++.++ ..||+||+.++.. .+. +++.+.++..++.. .......+||||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQM 148 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHH
Confidence 699999999887 5699999987531 111 12333344443321 1233456899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
|+|||||+.+|+++||||||++||+.+++++++.+.+...+|+|+|+||||++++.. ||||++|++|+++..++..+..
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV 228 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccC
Confidence 999999999999999999999999999999999887765568999999999999865 8999999999987543210000
Q ss_pred hcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHH
Q 001055 376 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 455 (1171)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 455 (1171)
. .+. +
T Consensus 229 ~---------------------------------------------------------------~~~----------~-- 233 (501)
T PRK11288 229 D---------------------------------------------------------------RDQ----------L-- 233 (501)
T ss_pred C---------------------------------------------------------------HHH----------H--
Confidence 0 000 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 456 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535 (1171)
Q Consensus 456 y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (501)
T PRK11288 234 -------------------------------------------------------------------------------- 233 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 615 (1171)
Q Consensus 536 ~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 615 (1171)
...+
T Consensus 234 --------------------------~~~~-------------------------------------------------- 237 (501)
T PRK11288 234 --------------------------VQAM-------------------------------------------------- 237 (501)
T ss_pred --------------------------HHHh--------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 616 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 695 (1171)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1171)
.
T Consensus 238 --------------------~----------------------------------------------------------- 238 (501)
T PRK11288 238 --------------------V----------------------------------------------------------- 238 (501)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 696 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 696 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
.... .+ ..... + .
T Consensus 239 ---------------~~~~-----------------------------------------~~---~~~~~---~-----~ 251 (501)
T PRK11288 239 ---------------GREI-----------------------------------------GD---IYGYR---P-----R 251 (501)
T ss_pred ---------------CCCc-----------------------------------------cc---ccccc---c-----c
Confidence 0000 00 00000 0 0
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
. +....++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 --~---~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 --P---LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred --C---CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 00124899999742 489999999999999999999999999999999999999999999999998654
Q ss_pred Ch-HHHhhheEEEcCCcc---ccc-ccHHhhccCCCCCC--HHH--HHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCC
Q 001055 856 GL-MDLRKILGIIPQSPV---LFS-GTVRFNLDPFSEHS--DAD--LWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 925 (1171)
Q Consensus 856 ~~-~~~r~~i~~v~Q~~~---lf~-~tv~~nl~~~~~~~--~~~--i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LS 925 (1171)
++ ...|+.++|+||++. +|. .|+.+|+.+..... ... .........+.++++.+ |++ ...+....+||
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 398 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLS 398 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCC
Confidence 43 345678999999973 554 69999986421100 000 00000112234555553 442 34566678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||||+|||||+.+|+||||||||+|||+.+.+.+++.|+++. .+.|||+||||++++.. ||++++|++|++++.|
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999998875 47899999999999987 9999999999999999
Q ss_pred ChhHHh
Q 001055 1004 TPEELL 1009 (1171)
Q Consensus 1004 ~~~el~ 1009 (1171)
+++++.
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 887654
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=658.87 Aligned_cols=530 Identities=25% Similarity=0.366 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP-LF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
...+++.++..++....|.++...+|......... .. +...++++.++..++.+++.++....+.+...+++..+++|
T Consensus 150 ~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (694)
T TIGR03375 150 RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFER 229 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666677777777766543222111 11 22233344555677888999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
++++|+.| +++++|++++|+ +|++.+.+.+...+...+..+..++..+++++++++...++.+..+++++++...+.+
T Consensus 230 ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 307 (694)
T TIGR03375 230 VLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQR 307 (694)
T ss_pred HhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 788999999999 7999998776655444444444444444444455544433333333333333344444
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA----NRWLAIRLEIVGGLMI 700 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~ 700 (1171)
..++..+......+...+.+.|+++|+++||+|+.++.+.+.+.+..+...+........ ..+..+...+...+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 387 (694)
T TIGR03375 308 PLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV 387 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556677889999999999999999999888777776665544433332222 2222222222222222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 777 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 777 (1171)
+ ++.+.+.. +.. ++|.++++ ...+..++..+......++....+.+|+.++++.+++.+.. . ..
T Consensus 388 ~-~g~~~v~~-g~l--------s~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~-~~ 454 (694)
T TIGR03375 388 V-VGVYLISD-GEL--------TMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--T-RF 454 (694)
T ss_pred H-HHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C-CC
Confidence 2 23333332 222 23333333 33445555666666677788899999999999877653211 1 10
Q ss_pred CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 778 ~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
....+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||+|++++++
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 11112346799999999997655579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
.++|++|+||||+|.+|++||+|||.++.+ .++++++++++.++++++++++|.|++|.+++.|.+||||||||++|||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998764 6899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||+++|+|||||||||+||+++++.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|+|+||++.
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999998889999999999999999999999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-69 Score=657.71 Aligned_cols=447 Identities=19% Similarity=0.292 Sum_probs=334.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCccce-------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-------------~~~ 227 (1171)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+.. .+.
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 5799999999999999999999999999999999999987 6775432 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC-------CHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF-------EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.|||+||++.++ ..||+||+.++... +.+ +..++++..++.+.. ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 599999999876 57999999876321 111 222333333332110 11234689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
||+|||||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999877665568999999999999875 899999999998865432110
Q ss_pred hhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHH
Q 001055 375 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 454 (1171)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 454 (1171)
... . .
T Consensus 229 ~~~---------------------------------------------------------------~----------~-- 233 (500)
T TIGR02633 229 SED---------------------------------------------------------------D----------I-- 233 (500)
T ss_pred CHH---------------------------------------------------------------H----------H--
Confidence 000 0 0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 455 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 534 (1171)
Q Consensus 455 ~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 534 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (500)
T TIGR02633 234 -------------------------------------------------------------------------------- 233 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 535 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 614 (1171)
Q Consensus 535 ~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 614 (1171)
+.++
T Consensus 234 ---------------------------~~~~------------------------------------------------- 237 (500)
T TIGR02633 234 ---------------------------ITMM------------------------------------------------- 237 (500)
T ss_pred ---------------------------HHHH-------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 615 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 694 (1171)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1171)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (500)
T TIGR02633 238 -------V------------------------------------------------------------------------ 238 (500)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCC
Q 001055 695 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 774 (1171)
Q Consensus 695 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~ 774 (1171)
+.. ... ..+... .
T Consensus 239 ----------------~~~--------------------------------------------~~~--~~~~~~-----~ 251 (500)
T TIGR02633 239 ----------------GRE--------------------------------------------ITS--LYPHEP-----H 251 (500)
T ss_pred ----------------Ccc--------------------------------------------ccc--cccccc-----c
Confidence 000 000 000000 0
Q ss_pred CCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEec
Q 001055 775 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDI 852 (1171)
Q Consensus 775 ~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i 852 (1171)
+ +....++++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 252 --~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 252 --E----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred --C----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 0 001248999999999421 23699999999999999999999999999999999999996 899999999998
Q ss_pred CCCCh-HHHhhheEEEcCCc---cccc-ccHHhhccCCCC--CCH-HHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCC
Q 001055 853 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD-ADLWEALERAHLKDAIRRNSLGLDA-QVSEAGEN 923 (1171)
Q Consensus 853 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~~--~~~-~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~ 923 (1171)
...+. ..+|++++|+||++ .+|. .|+++|+.+... ... ..+........+.++++.+ ++.. ..+.....
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGR 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCcccc
Confidence 65443 45678899999996 3665 499999965210 000 0000011112344555554 4432 34566678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. ++.|||+||||++++.. ||++++|++|+++.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998865 47899999999999987 99999999999998
Q ss_pred ecChhH
Q 001055 1002 YDTPEE 1007 (1171)
Q Consensus 1002 ~g~~~e 1007 (1171)
.++.++
T Consensus 484 ~~~~~~ 489 (500)
T TIGR02633 484 DFVNHA 489 (500)
T ss_pred EEcccc
Confidence 775543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=645.09 Aligned_cols=481 Identities=22% Similarity=0.255 Sum_probs=331.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-cCcEEEEecCCCCC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF 239 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~ 239 (1171)
+.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..||||+|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 46999999999962 3579999999999999999999999999999999999999999887543 34699999999987
Q ss_pred -cccHHHHHhcCCC-C----------------CHH----------HHHHHHHHcC-------chHHHhcCCCCCccccCC
Q 001055 240 -NATVRDNILFGSA-F----------------EPA----------RYEKAIDVTS-------LQHDLDLLPGGDVTEIGE 284 (1171)
Q Consensus 240 -~~Tv~eni~~g~~-~----------------~~~----------~~~~~~~~~~-------l~~~~~~~~~~~~~~i~~ 284 (1171)
..||.||+.++.. . ... .+.+.++.++ ....++.+.- .....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---~~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC---PPWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC---CcccC
Confidence 5699999987521 0 000 0000011000 0111121110 11344
Q ss_pred CCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCC
Q 001055 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEG 363 (1171)
Q Consensus 285 ~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G 363 (1171)
...+|||||||||+|||||+.+|++||||||||+||+.+.+++.+.+... +.|+|+||||++++.. ||+|++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 56789999999999999999999999999999999999999999876554 2599999999999986 7999999999
Q ss_pred EEE-EecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhh
Q 001055 364 MVK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 442 (1171)
Q Consensus 364 ~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1171)
+++ +.|+++++............. .
T Consensus 237 ~i~~~~g~~~~~~~~~~~~~~~~~~-----~------------------------------------------------- 262 (556)
T PRK11819 237 RGIPWEGNYSSWLEQKAKRLAQEEK-----Q------------------------------------------------- 262 (556)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHH-----H-------------------------------------------------
Confidence 986 778877654321100000000 0
Q ss_pred hccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 001055 443 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 522 (1171)
Q Consensus 443 ~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 522 (1171)
+.
T Consensus 263 -------------~~----------------------------------------------------------------- 264 (556)
T PRK11819 263 -------------EA----------------------------------------------------------------- 264 (556)
T ss_pred -------------HH-----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 523 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 602 (1171)
Q Consensus 523 ~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1171)
T Consensus 265 -------------------------------------------------------------------------------- 264 (556)
T PRK11819 265 -------------------------------------------------------------------------------- 264 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 603 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 682 (1171)
Q Consensus 603 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1171)
+...+.++ ..+++......+ ..
T Consensus 265 ---------------------~~~~~~~~------------~~~~~~~~~~~~------------~~------------- 286 (556)
T PRK11819 265 ---------------------ARQKALKR------------ELEWVRQSPKAR------------QA------------- 286 (556)
T ss_pred ---------------------HHHHHHHH------------HHHHHHHhhhhh------------HH-------------
Confidence 00000000 000000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001055 683 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 762 (1171)
Q Consensus 683 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~ 762 (1171)
..+......++..+.
T Consensus 287 ----------------------------------------------------------------~~~~~~~~~~~~~~~- 301 (556)
T PRK11819 287 ----------------------------------------------------------------KSKARLARYEELLSE- 301 (556)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHhhcc-
Confidence 000000000010000
Q ss_pred cCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 001055 763 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842 (1171)
Q Consensus 763 ~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~ 842 (1171)
.+.+.+.......+......+..++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++
T Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~ 378 (556)
T PRK11819 302 -EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS 378 (556)
T ss_pred -cccccCCCceeecCCCCCCCCeEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 000000000000000000112359999999999753 69999999999999999999999999999999999999999
Q ss_pred ceEEECCEecCCCChHHHhhheEEEcCCc-cccc-ccHHhhccCCCC---C--CHHHHHHHHHHhcHHHHHHHccCCcch
Q 001055 843 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFSE---H--SDADLWEALERAHLKDAIRRNSLGLDA 915 (1171)
Q Consensus 843 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~~nl~~~~~---~--~~~~i~~~l~~~~~~~~i~~lp~gl~~ 915 (1171)
|+|.+++ + ..|||+||++ .++. .|+++|+.+... . .+.+.. .+++.+ |+..
T Consensus 379 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~ 436 (556)
T PRK11819 379 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF--NFKG 436 (556)
T ss_pred eEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC--CCCh
Confidence 9999954 2 1599999997 5654 499999864321 1 111122 233432 4432
Q ss_pred -hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEE
Q 001055 916 -QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILL 993 (1171)
Q Consensus 916 -~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~v 993 (1171)
..+....+|||||||||+|||||+.+|++|||||||+|||+.+...+++.|++. .+|||+||||++++.. ||+|++
T Consensus 437 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vtHd~~~~~~~~d~i~~ 514 (556)
T PRK11819 437 GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PGCAVVISHDRWFLDRIATHILA 514 (556)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhCCEEEE
Confidence 345667789999999999999999999999999999999999999999999985 3599999999999987 999999
Q ss_pred EeC-cEEEE-ecChhHHhhc
Q 001055 994 LDS-GRVLE-YDTPEELLSN 1011 (1171)
Q Consensus 994 l~~-G~i~~-~g~~~el~~~ 1011 (1171)
|++ |++.+ .|+++++++.
T Consensus 515 l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 515 FEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EECCCeEEEecCCHHHHHHH
Confidence 985 88875 5888877643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=647.39 Aligned_cols=435 Identities=21% Similarity=0.338 Sum_probs=330.5
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTVAY 231 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i~~ 231 (1171)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 57999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 232 VPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
++|++.++ ..||+||+.++.. .+.. +..++++..++.. .......+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHH
Confidence 99999775 6799999987631 1111 1222233333221 22344578999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcch
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
|||+.+|++|||||||++||+.+++++++.+.+....|+|+|+||||++++.. ||++++|++|++++.|+.+++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 224 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-- 224 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH--
Confidence 99999999999999999999999999999877765568999999999999865 899999999999887654332100
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 380 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
...
T Consensus 225 ---~~~-------------------------------------------------------------------------- 227 (491)
T PRK10982 225 ---KII-------------------------------------------------------------------------- 227 (491)
T ss_pred ---HHH--------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
T Consensus 228 -------------------------------------------------------------------------------- 227 (491)
T PRK10982 228 -------------------------------------------------------------------------------- 227 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
.++
T Consensus 228 -----------------------~~~------------------------------------------------------ 230 (491)
T PRK10982 228 -----------------------AMM------------------------------------------------------ 230 (491)
T ss_pred -----------------------HHH------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
+
T Consensus 231 --~----------------------------------------------------------------------------- 231 (491)
T PRK10982 231 --V----------------------------------------------------------------------------- 231 (491)
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
+.. . .+ ..+... . .
T Consensus 232 -----------~~~-----------------------~------------------~~-----~~~~~~-----~---~- 245 (491)
T PRK10982 232 -----------GRS-----------------------L------------------TQ-----RFPDKE-----N---K- 245 (491)
T ss_pred -----------CCC-----------------------c------------------cc-----cccccc-----C---C-
Confidence 000 0 00 000000 0 0
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
+.+..|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...++..
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 011248999999975 25999999999999999999999999999999999999999999999999997766543
Q ss_pred -HhhheEEEcCCcc---ccc-ccHHhh-----ccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCC
Q 001055 860 -LRKILGIIPQSPV---LFS-GTVRFN-----LDPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 924 (1171)
Q Consensus 860 -~r~~i~~v~Q~~~---lf~-~tv~~n-----l~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~L 924 (1171)
+++.++|+||++. +|. .|+.+| +..+.. ....+. ...+.++++.+ ++. ...+....+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhc--CccCCCcccccccC
Confidence 4667999999963 554 377665 321111 011111 12234455554 332 2346677889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
||||||||+||||++.+|+||||||||+|||+.+.+.+++.|+++. +++|||+||||++++.. |||+++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998865 47999999999999987 999999999999988
Q ss_pred cChhH
Q 001055 1003 DTPEE 1007 (1171)
Q Consensus 1003 g~~~e 1007 (1171)
+++++
T Consensus 473 ~~~~~ 477 (491)
T PRK10982 473 VDTKT 477 (491)
T ss_pred Ecccc
Confidence 76643
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=645.61 Aligned_cols=539 Identities=23% Similarity=0.338 Sum_probs=406.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccccCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
.++++.++...+....|.++...+|....... ... .+...+.++.++..++.+++.++....+.+...+++..+++++
T Consensus 143 ~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 222 (694)
T TIGR01846 143 EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHL 222 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666777666665432211 111 2223344455567788899999999999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 625 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 625 (1171)
+++|+.||+++++|++++|+ +|++.+.+.+...+...+..+...+..+++++++.+...++++..+++++.+.....+.
T Consensus 223 ~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~ 301 (694)
T TIGR01846 223 LGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPI 301 (694)
T ss_pred HcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 69999887665544444444444443444444555544443333333333333333333
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001055 626 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 702 (1171)
Q Consensus 626 ~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~ 702 (1171)
.++..+......+...+.+.|+++|+++||+++.++.+.+.+.+..+...+..........+......++ ..+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 381 (694)
T TIGR01846 302 LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLW 381 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333444556778899999999999999999998888777766655544443333333333322222 2222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~---~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
++.+.+.. +.. ++|.+++ +...+..++..+.......+....+.+|+.++++.+++.+.. ....
T Consensus 382 ~g~~lv~~-g~i--------t~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~-- 448 (694)
T TIGR01846 382 FGAHLVIG-GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAA-- 448 (694)
T ss_pred HHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCC--
Confidence 23333332 222 2333333 333455556666666777888899999999999877653211 1001
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
.....+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++..+
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHH
Confidence 11224679999999999765457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|++|+||||++.+|++|++|||.+.. +.++++++++++.++++++++++|.|++|.+++.|.+||||||||++|||||
T Consensus 529 ~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal 608 (694)
T TIGR01846 529 LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL 608 (694)
T ss_pred HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998764 4688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+++++.. +.|.+
T Consensus 609 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~ 687 (694)
T TIGR01846 609 VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYAR 687 (694)
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHH
Confidence 99999999999999999999999999999987889999999999999999999999999999999999999864 67887
Q ss_pred HHH
Q 001055 1019 MVQ 1021 (1171)
Q Consensus 1019 ~~~ 1021 (1171)
++.
T Consensus 688 l~~ 690 (694)
T TIGR01846 688 LWQ 690 (694)
T ss_pred HHH
Confidence 765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-65 Score=632.61 Aligned_cols=543 Identities=24% Similarity=0.367 Sum_probs=420.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP-LF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+++.+++.++...+....+.++....+......... .. +..++.++.+...++.+++.++....+.+....+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 95 (571)
T TIGR02203 16 LVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFE 95 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555566666655554322211111 11 2234555666677888889999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
++++.|..+|++.+.|++++|+++|++.++..+...+..++..++.++..++++++..+...++++.++++.+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~ 175 (571)
T TIGR02203 96 KLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175 (571)
T ss_pred HHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777666666666655555555555454555555
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ 700 (1171)
+..++..+......++..+.+.|.++|+.++|+++.++++.+.+.+..+...+..........+......++. .+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (571)
T TIGR02203 176 KRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVV 255 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666778889999999999999999999988877777666655544433333333333222222 2222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
++++.+.+.. +..+ .+.+..++.+...+..++..+............+.+|+.++++.+++.+.. ..+.
T Consensus 256 ~~~g~~~~~~-g~lt-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~-- 324 (571)
T TIGR02203 256 LFIALFQAQA-GSLT-----AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI-- 324 (571)
T ss_pred HHHHHHHHHc-CCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--
Confidence 2223333322 2221 122222333444455666666667777888899999999998765543211 1111
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+..+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++++++.+++
T Consensus 325 ~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 325 ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 12345699999999997644579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|++|+||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|+||.+++.|.+||||||||++||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999775 4789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|+|++++++. +.|.+
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999998764 45554
Q ss_pred HH
Q 001055 1019 MV 1020 (1171)
Q Consensus 1019 ~~ 1020 (1171)
++
T Consensus 564 ~~ 565 (571)
T TIGR02203 564 LH 565 (571)
T ss_pred HH
Confidence 43
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=586.07 Aligned_cols=533 Identities=24% Similarity=0.321 Sum_probs=385.7
Q ss_pred HHHHHHhHHhhhhhhccccccCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001055 476 TETLRVSSSTWLSYWTDQSSLKT------HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 549 (1171)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p 549 (1171)
...+....|..+...+|...... ..+.-....|.+..++..++..++..++....+++-++...+.|.+++.+.
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555554444322111 112234556777888899999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001055 550 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA-RE 628 (1171)
Q Consensus 550 ~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~ 628 (1171)
+.+|.+..+|.+.+.+..-...+...+...+..++..++.+......+.+-......++....+..|.++..+.... .+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 99999999999988887777777666666666666665555444433333322222222223333444443322221 22
Q ss_pred HHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 629 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV 708 (1171)
Q Consensus 629 ~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 708 (1171)
.++....+.........+.+.+..+||+|+.|++..+++...+....+...........+.+....+..+....+..+..
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334445567788999999999999999999999988888777776665544444444444443222222111111
Q ss_pred HhcCCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCc
Q 001055 709 VQNGSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 785 (1171)
Q Consensus 709 ~~~~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g 785 (1171)
. +.. .-..+.|-++.+ ...+..++..+...+......+..+..+.... +.+ ....+. +.+....++
T Consensus 282 ~--gi~----~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~--~~~-~~i~~~--~~~i~~~~~ 350 (591)
T KOG0057|consen 282 N--GIA----AGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILL--EVD-EDIQEA--ALPIELFGG 350 (591)
T ss_pred h--hhh----hccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhh--hhh-hhhhhc--cCCcccCCC
Confidence 0 000 001122222222 22222223222222222222222222221111 111 000111 112223456
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+|+||+|.|+++ +++|+++||+|++||+|||+|+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.||
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 79999999999876 469999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||||..||++||.+||.+++ ..+++++.+++++++++|.+.++|+||+|.++++|..|||||||||+||||++++|+|
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 999999999999999998765 4689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
+++|||||+||.+||+.+.+.+.+...++|+|+|.||++++++||+|+++++|++.++|+|+||++ ..+.|..++..
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 999999999999999999999999888999999999999999999999999999999999999998 56667666543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-68 Score=645.37 Aligned_cols=442 Identities=25% Similarity=0.352 Sum_probs=332.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------cCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 229 (1171)
.|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +..+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4899999999963 469999999999999999999999999999999999999998865321 1248
Q ss_pred EEEecCCCC--C-------cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSWI--F-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~l--~-------~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|++.+ + ..||++|+.++. ...++..+.++..++.+..+. ...+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 999998643 1 458999987542 123455666777776554433 3358999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcch
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
|||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+|||+++++.. ||++++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999999887765568999999999999875 79999999999998877655421100
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 380 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
...+..
T Consensus 228 -~~~~~~------------------------------------------------------------------------- 233 (490)
T PRK10938 228 -VAQLAH------------------------------------------------------------------------- 233 (490)
T ss_pred -hhhhhh-------------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
.+ .+.
T Consensus 234 ------~~-------------------~~~-------------------------------------------------- 238 (490)
T PRK10938 234 ------SE-------------------QLE-------------------------------------------------- 238 (490)
T ss_pred ------hh-------------------ccC--------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCcccCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRPP 778 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e-~~~~~~~~~~~ 778 (1171)
. ...+.. .+.. ... ..
T Consensus 239 ------------------------------------------------------------~-~~~~~~~~~~~-~~~-~~ 255 (490)
T PRK10938 239 ------------------------------------------------------------G-VQLPEPDEPSA-RHA-LP 255 (490)
T ss_pred ------------------------------------------------------------c-cccCccccccc-ccc-cC
Confidence 0 000000 0000 000 00
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEecCC-CC
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-FG 856 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i~~-~~ 856 (1171)
.....++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. ..
T Consensus 256 ---~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ---CCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 011249999999999753 699999999999999999999999999999999998876 69999999987632 23
Q ss_pred hHHHhhheEEEcCCccccc---ccHHhhccC--CC------CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCC
Q 001055 857 LMDLRKILGIIPQSPVLFS---GTVRFNLDP--FS------EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENF 924 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~---~tv~~nl~~--~~------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~L 924 (1171)
....|++|+|+||++.++. .|+++++.. .. ..... . ...+.+.++. .|++. ..+....+|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~--~~l~~~~~~~~~~~L 402 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR-Q-----QKLAQQWLDI--LGIDKRTADAPFHSL 402 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH-H-----HHHHHHHHHH--cCCchhhccCchhhC
Confidence 3346778999999986542 367766532 11 01111 0 1112334444 25554 456666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-C-cEEEEEecChhhhhh--cCEEEEEeCcEEE
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDSGRVL 1000 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~--~d~i~vl~~G~i~ 1000 (1171)
||||||||+|||||+.+|+||||||||+|||+.+.+.+.+.|+++.+ + .|||+||||++++.. ||++++|++|+|+
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 99999999999999999999999999999999999999999998754 4 479999999999974 8999999999998
Q ss_pred Eec
Q 001055 1001 EYD 1003 (1171)
Q Consensus 1001 ~~g 1003 (1171)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 753
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-67 Score=641.02 Aligned_cols=480 Identities=22% Similarity=0.265 Sum_probs=331.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-cCcEEEEecCCCCC-
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF- 239 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~- 239 (1171)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 6899999999962 3579999999999999999999999999999999999999999876543 34699999999987
Q ss_pred cccHHHHHhcCCCC------------------CH---------HHHHHHHHHcCchH-------HHhcCCCCCccccCCC
Q 001055 240 NATVRDNILFGSAF------------------EP---------ARYEKAIDVTSLQH-------DLDLLPGGDVTEIGER 285 (1171)
Q Consensus 240 ~~Tv~eni~~g~~~------------------~~---------~~~~~~~~~~~l~~-------~~~~~~~~~~~~i~~~ 285 (1171)
+.||+|||.++... .. .++.++++.++... .++.+. ....+..
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---l~~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR---CPPWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC---CCcccCc
Confidence 57999999875210 00 11222333333221 122211 1113455
Q ss_pred CCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCE
Q 001055 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 286 g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 364 (1171)
..+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+.+. +.|+|+||||++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 6799999999999999999999999999999999999999999876543 3699999999999986 79999999999
Q ss_pred EE-EecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhh
Q 001055 365 VK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 443 (1171)
Q Consensus 365 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1171)
++ +.|+++++............
T Consensus 236 i~~~~g~~~~~~~~~~~~~~~~~--------------------------------------------------------- 258 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEKRLEQEE--------------------------------------------------------- 258 (552)
T ss_pred EEEecCCHHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 75 67888766432100000000
Q ss_pred ccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 001055 444 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 523 (1171)
Q Consensus 444 ~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 523 (1171)
..+.
T Consensus 259 ----------~~~~------------------------------------------------------------------ 262 (552)
T TIGR03719 259 ----------KEES------------------------------------------------------------------ 262 (552)
T ss_pred ----------HHHH------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 524 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 603 (1171)
Q Consensus 524 ~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (1171)
T Consensus 263 -------------------------------------------------------------------------------- 262 (552)
T TIGR03719 263 -------------------------------------------------------------------------------- 262 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 604 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 683 (1171)
Q Consensus 604 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1171)
+..++.++. .+++..... .... ..
T Consensus 263 --------------------~~~~~~~~~------------~~~~~~~~~----~~~~----~~---------------- 286 (552)
T TIGR03719 263 --------------------ARQKALKRE------------LEWVRSSPK----ARQA----KS---------------- 286 (552)
T ss_pred --------------------HHHHHHHHH------------HHHHHhhhh----hHHH----HH----------------
Confidence 000000000 000000000 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001055 684 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 763 (1171)
Q Consensus 684 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~ 763 (1171)
.......++..+ .
T Consensus 287 -----------------------------------------------------------------~~~~~~~~~~~~--~ 299 (552)
T TIGR03719 287 -----------------------------------------------------------------KARLARYEELLS--Q 299 (552)
T ss_pred -----------------------------------------------------------------HHHHHHHHhhhh--h
Confidence 000000000000 0
Q ss_pred CCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 001055 764 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843 (1171)
Q Consensus 764 ~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G 843 (1171)
.+...+.......+......+..++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G 377 (552)
T TIGR03719 300 EFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG 377 (552)
T ss_pred cccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 000000000000000000112359999999999753 699999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHHhhheEEEcCCcc-ccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch-hh
Q 001055 844 RILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA-QV 917 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~ 917 (1171)
+|.+++ + ..|||+||++. ++. .|+.+|+.+... ....+. ...++++.+ |+.. ..
T Consensus 378 ~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-------~~~~~l~~~--~l~~~~~ 437 (552)
T TIGR03719 378 TIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-------PSRAYVGRF--NFKGSDQ 437 (552)
T ss_pred EEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH-------HHHHHHHhC--CCChhHh
Confidence 999954 2 15999999973 554 499999965321 111110 112334443 4433 34
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 918 ~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
+....+|||||||||+|||||+.+|++|||||||++||+.+...+++.|+++ ++|||+||||++++.. ||+|++|++
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5666789999999999999999999999999999999999999999999986 3589999999999987 999999996
Q ss_pred -cEEEEe-cChhHHh
Q 001055 997 -GRVLEY-DTPEELL 1009 (1171)
Q Consensus 997 -G~i~~~-g~~~el~ 1009 (1171)
|++... |+++++.
T Consensus 516 ~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 516 DSHVEWFEGNYSEYE 530 (552)
T ss_pred CCeEEEeCCCHHHHH
Confidence 688744 7776664
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-67 Score=649.86 Aligned_cols=203 Identities=21% Similarity=0.325 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 49999999999753 6999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcCCc-ccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSP-VLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~-~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|++|++ .++.. ||.+|+..... ...... ...+.+++..+ ++. .........|||||||||+|||||+.+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGR-----PRHVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccch-----HHHHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999986 46544 99999864321 100000 01123344442 332 234556678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe-CcEEEEe-cChhHHhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLS 1010 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-~G~i~~~-g~~~el~~ 1010 (1171)
|++|||||||++||+.+...+.+.|++. ++|||+||||++++.. ||+|++|+ +|++..+ |++++++.
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999884 6799999999999987 99999998 8999887 99999864
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-65 Score=630.09 Aligned_cols=545 Identities=22% Similarity=0.299 Sum_probs=390.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
+.+++++.++...+....+.++....|..... .....+..++.++.+...+..++..+.......+...+++..+++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 99 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERI 99 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666677776666543221 11111122222223333333334444444445555556677999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 625 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 625 (1171)
+++|..+|.+.+.|++++|+++|++.+...+...+..++..++..+..+++++++.+...++++.++++++.+...+.+.
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~ 179 (588)
T PRK13657 100 IQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRK 179 (588)
T ss_pred HhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876555555454444444444444444445444333333333333444444555
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 626 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 702 (1171)
Q Consensus 626 ~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ 702 (1171)
.++..+......+.+.+.+.|.++|++++|+|+.++.+.+.+.+..+...+..........+......+ +..+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (588)
T PRK13657 180 TKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILV 259 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566788889999999999999999999887777766665554433322222222222222 22222333
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCC
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 782 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 782 (1171)
.+.+.+.. +..+. ..+..++.+...+..++..+............+.+|+.++.+.+++.+.. ..... ..+
T Consensus 260 ~g~~~v~~-g~lt~-----g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~-~~~ 330 (588)
T PRK13657 260 LGAALVQK-GQLRV-----GEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAID-LGR 330 (588)
T ss_pred HHHHHHHc-CCcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCC-cCC
Confidence 33333332 22221 11112222333344444555555555666777888888877654332111 01000 011
Q ss_pred CCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh
Q 001055 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
..+.|+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..++|+
T Consensus 331 ~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 331 VKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 23469999999999753 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred heEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 863 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+|+||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++|||||+++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4688999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+++++. .+.|.+++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 568 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLR 568 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHH
Confidence 9999999999999999999999999998778999999999999999999999999999999999999976 467777665
Q ss_pred h
Q 001055 1022 S 1022 (1171)
Q Consensus 1022 ~ 1022 (1171)
.
T Consensus 569 ~ 569 (588)
T PRK13657 569 A 569 (588)
T ss_pred H
Confidence 3
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=579.95 Aligned_cols=500 Identities=23% Similarity=0.386 Sum_probs=378.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001055 515 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 594 (1171)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~ 594 (1171)
..++.-+++++.....++..+.+..++|+|+..+++.|+-.+..|+++.-+......+. .+...+.++...+..+..++
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 35667788888889999999999999999999999999999999998877766555443 22233333333333333333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHH
Q 001055 595 VLIGI-VSTMSLWAIMPLLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD 672 (1171)
Q Consensus 595 ~~~~~-~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~ 672 (1171)
+..++ ...+..++++..+. .|+.. .....-.-+.+|....+-..-.+.-.+++-+.+|+|-|+++++..+.+.+...
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~-lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMML-LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHH-HHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 22221 11222222211111 12111 11111111112221112222234557889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 673 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 752 (1171)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1171)
+.++.....+..-..+....+.+.++....+..+.+. ..+.+....+-.-++.+|.+.+..++..+...+..+++.+
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY---~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAY---RVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeee---eeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 8887665554333333333333333222222221111 0000100111223455666677777788888888899999
Q ss_pred HHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHH
Q 001055 753 NAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 832 (1171)
Q Consensus 753 ~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~ 832 (1171)
..+|++.++++.++| ..+....++-....|.|+|+||+|.|+++ +|+|+||||+++||+.+|+|||||+||||+++
T Consensus 507 iDmEnmfdllkee~e---Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPE---VVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred hhHHHHHHHhhcCch---hhcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHH
Confidence 999999988864443 22222222323356889999999999876 48999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccC
Q 001055 833 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSL 911 (1171)
Q Consensus 833 ~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~ 911 (1171)
+|.|+++.++|.|.|||+||++...+++|++||+||||..||+.||..||.+.. .++++++.+|++.+++++-|..+|+
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999999998765 4689999999999999999999999
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEE
Q 001055 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 912 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i 991 (1171)
||+|.++|+|-.|||||||||++||+++++|.|++|||+||+||..|++.|+.+|.+...++|.|+|+||++++.+||.|
T Consensus 663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~I 742 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLI 742 (790)
T ss_pred hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 992 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 992 ~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
+|+++|+|+|.|+|+||+++.++.|.+|++.+
T Consensus 743 Lvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999999999999743
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=615.53 Aligned_cols=546 Identities=20% Similarity=0.265 Sum_probs=393.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
.+++.+++.++...+....|+.++..+|...... ....+..+++++.+...+..++..++......+...+++.++|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 98 (585)
T TIGR01192 20 RVLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGR 98 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666667777766666432211 111111222222233333444444445555556666777899999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
++++|+.||+++++|++++|+++|++.+...+...+...+..++.++..++.++.+.+...++++.++++++.+...+.+
T Consensus 99 l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 99 IISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766666655555555555444444455544444333333333333444444
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL---EIVGGLMIW 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 701 (1171)
..++..+......+.+.+.+.|.++|+++||+|+.++...+.+.+..+...+..........+..... ..+..++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 258 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCIL 258 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555667788999999999999999999888777776665544333322221111111111 111222222
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
+++.+.+.. +..+. +.+..++.+...+..++..+............+.+|+.++.+.+++... ...+....
T Consensus 259 ~~g~~~v~~-g~it~-----g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~ 329 (585)
T TIGR01192 259 VIGTVLVIK-GELSV-----GEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELP 329 (585)
T ss_pred HHHHHHHHc-CCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCC
Confidence 233333322 22211 1112222333344445555555666667778889999888765443211 11100111
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.++++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++..+|
T Consensus 330 ~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred CCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 123569999999999754 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+.++||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|++|.+++.+.+|||||||||+|||||++
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
+|++||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|++++++. +.|.+++
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~ 567 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLL 567 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHH
Confidence 999999999999999999999999999887889999999999999889999999999999999999999864 5777766
Q ss_pred Hh
Q 001055 1021 QS 1022 (1171)
Q Consensus 1021 ~~ 1022 (1171)
..
T Consensus 568 ~~ 569 (585)
T TIGR01192 568 RR 569 (585)
T ss_pred Hh
Confidence 54
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=618.60 Aligned_cols=501 Identities=22% Similarity=0.303 Sum_probs=378.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 001055 507 IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 586 (1171)
Q Consensus 507 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~ 586 (1171)
+++++.++..++.++..++....+.+...++|..++++++++|+.+|+++++|++++|+++|++.+...+...+..++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~ 120 (569)
T PRK10789 41 TMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDS 120 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444455666777778888888999999999999999999999999999999999999999999875544444444444
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHH
Q 001055 587 VSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 665 (1171)
Q Consensus 587 ~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~ 665 (1171)
++..+..++++ .++.+...++++.++++.+.+...+.+..++..+......+.+.+.+.|.++|++++|+|+.++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~ 200 (569)
T PRK10789 121 LVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSA 200 (569)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHH
Confidence 33333332222 23333333322222222223333333333333444445567788899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHH
Q 001055 666 INGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLT 739 (1171)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~ 739 (1171)
.+.+..+...+..........+....... +..+++++++.+.+. .+.. ++|.++++. ..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~l--------t~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 201 LFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-NGSL--------TLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCc--------CHHHHHHHHHHHHHHHHHHH
Confidence 77766655444333322222222221211 112222222223332 2221 233333333 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEE
Q 001055 740 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 819 (1171)
Q Consensus 740 ~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~i 819 (1171)
.+......+.....+.+|+.++++.+++.+. ..... .+..+.|+++||+|+|++..+++|+|+||+|+||++++|
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEE
Confidence 5555666777888999999999876544211 10001 112356999999999976445799999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHH
Q 001055 820 VGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALE 898 (1171)
Q Consensus 820 vG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~ 898 (1171)
+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+||||+|.+|++|+++||.++. +.++++++++++
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~ 426 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVAR 426 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998764 468899999999
Q ss_pred HhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 001055 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978 (1171)
Q Consensus 899 ~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~v 978 (1171)
.+++++++.++|.|++|.+++.+.+||||||||++|||||+++|+||||||||++||+++++.+++.|++..+++|+|+|
T Consensus 427 ~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~i 506 (569)
T PRK10789 427 LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS 506 (569)
T ss_pred HcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998788999999
Q ss_pred ecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 979 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|||++.+..||+|++|++|++++.|+|++++++. +.|.+++..
T Consensus 507 tH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 507 AHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred ecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 9999999999999999999999999999999764 578777654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-63 Score=618.83 Aligned_cols=547 Identities=25% Similarity=0.392 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+.+.+++.++...+....|..+....|....... ... .+..+++++.+...+..+.+.++....+.+....+|..+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 99 (576)
T TIGR02204 20 VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFA 99 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666654221111 111 12222333444455667778888888999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
++++.|..+|+..+.|++++|+++|++.++..+...+..++..++.++..+++++.+.+...++++..+++.+.....+.
T Consensus 100 ~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~ 179 (576)
T TIGR02204 100 HLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179 (576)
T ss_pred HHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666666656666666555555555555544443333333333344444
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 700 (1171)
+..++..+........+.+.+.|.++|+++||+++.++.+.+.+.+..+..............+.......+ ..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
T TIGR02204 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGV 259 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556667788999999999999999999998877777666654443332222222222222221 11122
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
++++.+.+.. +..+ .+.+..+..+...+..++..+...+........+.+|+.++++.+++.+..... ....
T Consensus 260 ~~~g~~~v~~-g~lt-----~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~ 331 (576)
T TIGR02204 260 LWVGAHDVIA-GKMS-----AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP--KTLP 331 (576)
T ss_pred HHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--ccCC
Confidence 2222222322 2221 112222333344555666666777777888899999999998765542211101 1111
Q ss_pred CCCCccEEEEeeEEEeCCCC-CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 781 WPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
++..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.+++++++.+
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 332 VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 12335699999999997532 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|++|+|+||+|.+|++|++|||.++. +.++++++++++.+++.++++++|.|++|.+++.|.+||||||||++||||+
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754 4578999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+++|++||||||||+||+++++.+++.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++++. .+.|.+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~ 570 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYAR 570 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999875 456666
Q ss_pred HHH
Q 001055 1019 MVQ 1021 (1171)
Q Consensus 1019 ~~~ 1021 (1171)
++.
T Consensus 571 l~~ 573 (576)
T TIGR02204 571 LAR 573 (576)
T ss_pred HHh
Confidence 553
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=616.76 Aligned_cols=504 Identities=23% Similarity=0.303 Sum_probs=369.1
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 469 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYN-TI--YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
.+++.++...+....+..++..+|....... ...+. .+ +.++.++..++.++..++......+...++|.++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 96 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRL 96 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555553221111 11111 11 11234456667788888888889999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL-FYAAYLYYQS 624 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~ 624 (1171)
+++|..+|+++++|++++|+++|++.++..+...+..++..+..++..+++++++.+...++++..+++ .+....+..+
T Consensus 97 l~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 176 (529)
T TIGR02868 97 ARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLR 176 (529)
T ss_pred hccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987776666666666666555555555555444433322222 2222233333
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 701 (1171)
..+...+......+.+.+++.|.++|+++||+|+.++.+.+.+.+..+...+..........+......++..+ +++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (529)
T TIGR02868 177 AARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGAL 256 (529)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445567788999999999999999999998888887766655544433332222222222222211 111
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
+.+.+.+. .+..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+... ........
T Consensus 257 ~~g~~~~~-~g~~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~ 329 (529)
T TIGR02868 257 WAGGPAVA-DGTLA-----PATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALG 329 (529)
T ss_pred HHHHHHHh-CCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccC
Confidence 22222222 22221 1122233333444556666667777778888999999999987665432111 10011112
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.|+++||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|++++ ..++|
T Consensus 330 ~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr 407 (529)
T TIGR02868 330 LGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELR 407 (529)
T ss_pred CCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHH
Confidence 234569999999999764 3699999999999999999999999999999999999999999999999999999 99999
Q ss_pred hheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++++|+|+||.++++|.+||||||||++|||||++
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999864 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecCh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 982 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~ 982 (1171)
+|+|||||||||+||+++++.|++.|.+..+++|+|+||||+
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999988899999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-66 Score=560.84 Aligned_cols=458 Identities=27% Similarity=0.437 Sum_probs=349.4
Q ss_pred CcEEEEeeEEEcCC-CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCccc-----------
Q 001055 161 PAISIRNGYFSWDS-KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA----------- 223 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~-~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~----------- 223 (1171)
+.++++|++..|.. ++...++++|||+|++||.+||||+||||||-..+.++|+++.. +|.+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 46899999998863 23467999999999999999999999999999999999999641 12211
Q ss_pred ----eec-CcEEEEecCCCC-Cc--ccHH----HHHhcCCCCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 224 ----VIR-GTVAYVPQVSWI-FN--ATVR----DNILFGSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 224 ----~~~-~~i~~v~Q~~~l-~~--~Tv~----eni~~g~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
.+| .+|++++|+|-- .| -||. |-|....... .++..+.++.+++.+--.. +....+
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCc
Confidence 123 369999999953 22 2554 4444433322 2344455566665443221 233346
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
+|||||||||-||.||+.+|++||-||||++||.....+|.+.+..+.. .|.++++||||+..+.. +|||++|.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999998776654 49999999999999986 699999999999
Q ss_pred EEecChhHHhhcch-HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhc
Q 001055 366 KEEGTFEDLSNNGE-LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE 444 (1171)
Q Consensus 366 ~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (1171)
+++|+.+++..++. .|....-+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHh---------------------------------------------------------
Confidence 99998777654310 01000000
Q ss_pred cccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001055 445 TGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSY 524 (1171)
Q Consensus 445 ~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 524 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 525 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604 (1171)
Q Consensus 525 ~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 605 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 684 (1171)
Q Consensus 605 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001055 685 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 764 (1171)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~ 764 (1171)
..
T Consensus 260 ------------------------------------------------------------------------------ae 261 (534)
T COG4172 260 ------------------------------------------------------------------------------AE 261 (534)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred CCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 765 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 765 ~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~---------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
|...+ ++........++.+||.+.|+-+ ...+++++||++++||.+||||.||||||||-.+|+
T Consensus 262 P~g~~-------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 262 PSGDP-------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred CCCCC-------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 00000 00000112247778887777421 124899999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCEecCCCChHH---HhhheEEEcCCcc--ccc-ccHHhhc----cCCC-CCC----HHHHHHHHHHh
Q 001055 836 RIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNL----DPFS-EHS----DADLWEALERA 900 (1171)
Q Consensus 836 g~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~~--lf~-~tv~~nl----~~~~-~~~----~~~i~~~l~~~ 900 (1171)
|+++++ |+|.++|.++...+.++ +|+++-+|+|||+ |-. .||.+-+ .... ..+ ++.+.++++.+
T Consensus 335 rL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 335 RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred hhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 999876 99999999999888776 5889999999996 332 3766543 2222 122 34566777776
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEE
Q 001055 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLII 978 (1171)
Q Consensus 901 ~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~v 978 (1171)
|++.-. .++.+..+|||||||++||||++-+|++++||||||+||.--...+.+.|+++. .+-+-++|
T Consensus 414 GLDp~~----------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFI 483 (534)
T COG4172 414 GLDPAT----------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFI 483 (534)
T ss_pred CCChhH----------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 654322 345567899999999999999999999999999999999999999999999875 36899999
Q ss_pred ecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 979 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 979 tH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
|||+..++. ||+|+||.+|+|||+|+.+++.+++...|.+.
T Consensus 484 SHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 484 SHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred eccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999998 99999999999999999999999887777643
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-63 Score=610.38 Aligned_cols=513 Identities=24% Similarity=0.298 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccc-cCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
+.+++.++...+....+..++..+|... .... . ...+..++.++.++..++.+++.++....+.+...++|..++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 86 (529)
T TIGR02857 7 LLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAA 86 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666665432 1111 1 12233344555666778888999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
+++.|..+|++.++|++++|+++|++.++..+...+..++..++..+..+++++...+...++++..+++...+...+.+
T Consensus 87 l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~ 166 (529)
T TIGR02857 87 VAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGW 166 (529)
T ss_pred HHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877665556555555555555545544444333332222222222223333
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 701 (1171)
..+...+......+.+.+.+.|+++|+++||+|+.++++.+.+.+..+...+..........+......++..+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (529)
T TIGR02857 167 AAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444556788899999999999999999998888777666555444333222222322222222221 212
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~---~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
+++.+.+. .+.. ++|.+++ +...+..++..+............+.+|+.++++.+++... .. +.
T Consensus 247 ~~~~~~~~-~g~~--------t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~~ 313 (529)
T TIGR02857 247 VYIGFRLL-AGDL--------DLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-PV 313 (529)
T ss_pred HHHHHHHH-cCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-CC
Confidence 22222222 2222 2233333 33344455555566667778889999999999875432211 11 11
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
+ .+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+
T Consensus 314 ~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 T-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred C-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 1 112346999999999976545799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|++|+||||+|.+|++|++|||.++. ..++++++++++.++++++++++|.|+||.+++.|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764 458899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEE
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=655.93 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeC--CCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~--~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.++++||+++|+ ++.+++|+|||+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 223479999999999999999999999999999999999997 78899999999984 257
Q ss_pred hhheEEEcCCcccc-cccHHhhccCCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 861 RKILGIIPQSPVLF-SGTVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf-~~tv~~nl~~~~------~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
|+.+|||||++.++ ..||+|||.+.. ..+++ .+.++++..++.+ -.++.+++.+..||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88999999998655 569999997421 12222 2344444444332 235566666668999999
Q ss_pred HHHHHHHHhccCCC-EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh--hhcCEEEEEeCc-EEEEecC
Q 001055 930 QLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDT 1004 (1171)
Q Consensus 930 qrl~lArall~~p~-iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~--~~~d~i~vl~~G-~i~~~g~ 1004 (1171)
|||+|||+|+.+|+ ||+|||||+|||+.+...+++.|+++. +++|||+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999974 579999999999974 459999999987 9999998
Q ss_pred hhH
Q 001055 1005 PEE 1007 (1171)
Q Consensus 1005 ~~e 1007 (1171)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=594.05 Aligned_cols=526 Identities=18% Similarity=0.217 Sum_probs=379.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
+..+++.++...+....|.++...+|....... .. ..+..+++++.+...++.+++.++....+.+...++|.+++++
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 88 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAA 88 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666667777666664321111 11 1223334444555667788888899999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++.|+. ..+..++++++|++.+...+.. ....++..++.++.. ++++.+.+...++++..+++++.+..++.
T Consensus 89 ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~ 162 (544)
T TIGR01842 89 SFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNN 162 (544)
T ss_pred HhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999984 2356788999999999876544 233333333332222 23333333332222221222222222333
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL---EIVGGLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 700 (1171)
+..++..+......+...+.+.|.++|++++|+|+.++++.+.+.+..+...+................ ..+..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (544)
T TIGR01842 163 RATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLV 242 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445566778899999999999999999998888777666655443332222222211111 11222222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
+.++.+.+. .+..+. +.+..++.+...+..++..+......+.....+.+|+.++++.+++... . ...
T Consensus 243 ~~~g~~l~~-~g~it~-----g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~-~~~-- 310 (544)
T TIGR01842 243 LGLGAYLAI-DGEITP-----GMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A-MPL-- 310 (544)
T ss_pred HHHHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-CCC--
Confidence 222333332 222221 1111222333344555566666666778889999999999876554321 1 111
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+..+.++++||+|+|+++.+++|+|+||+++|||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+
T Consensus 311 ~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 11235699999999997544579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|+.++||||+|.+|++|+++|+.++.+ .++++++++++.++++++++++|.|++|.+++.+.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999986554 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|++|||||||++||+++++.+.+.|++.. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999875 5799999999999988899999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-63 Score=614.48 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=161.8
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..++++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3599999999999999999999999999999999999999999999875 2469
Q ss_pred EEEcCCcccccccHHhhcc-----CCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPVLFSGTVRFNLD-----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~-----~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
||+||++. ...++.+|.. .+....++++.+.++..++.+ ........+|||||||||+|||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2223433321 111223444555555544321 1334556789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 1009 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~ 1009 (1171)
.+|++|||||||++||+.+...+.+.|.+. ++|||+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 4699999999999987 9999999999998 568887764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-62 Score=645.50 Aligned_cols=564 Identities=19% Similarity=0.269 Sum_probs=417.2
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 448 VSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLI 527 (1171)
Q Consensus 448 ~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 527 (1171)
+++..+++|...... +.+++.+++.++...+....+..++..+|.... ......+...+++++++.+++.+++.++..
T Consensus 45 ~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 122 (1466)
T PTZ00265 45 IPFFLPFKCLPASHR-KLLGVSFVCATISGGTLPFFVSVFGVIMKNMNL-GENVNDIIFSLVLIGIFQFILSFISSFCMD 122 (1466)
T ss_pred ccHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454433222 233344444455555555555566655553211 112223344555667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 528 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 607 (1171)
Q Consensus 528 ~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1171)
..+.+...++|.+++++++++|+.||+.++.|++++|++.|+..+...+...+..++..++.++..++++++..+...++
T Consensus 123 ~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv 202 (1466)
T PTZ00265 123 VVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLC 202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999988887778888888777777777777777655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 608 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 687 (1171)
Q Consensus 608 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1171)
++.++++++.+..++.+..+...+......+...+.+.|+++|+++||+|+.++++.+.+.+......+..........+
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333444444444444444445567888999999999999999999998888877666555544333222222
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHhc-------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 688 LAIRL----EIVGGLMIWLTATFAVVQN-------GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVE 756 (1171)
Q Consensus 688 ~~~~~----~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 756 (1171)
..... .+..++++|+++ +.+..+ +..+....++..++.++++ ..+..+......+..+..+.+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~-~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~-----~~l~~i~~~~~~~~~a~~a~~ 356 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGT-RIIISDLSNQQPNNDFHGGSVISILLGVLISM-----FMLTIILPNITEYMKSLEATN 356 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHcCCcccccccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 11111 122223333333 233322 1111112222223322221 112233344556677889999
Q ss_pred HHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCC-CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 757 RVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 757 R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
|+.++++.+++.+.. +.... .+..+.|+++||+|+|+... .++|+|+||+|++||++||+||||||||||+++|+
T Consensus 357 ri~~ii~~~~~~~~~-~~~~~---~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 357 SLYEIINRKPLVENN-DDGKK---LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHcCCCCCCCC-CCCcc---CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999998766543211 11111 11224699999999997532 36999999999999999999999999999999999
Q ss_pred cCCCCCCceEEE-CCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC----------------------------
Q 001055 836 RIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---------------------------- 886 (1171)
Q Consensus 836 g~~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---------------------------- 886 (1171)
|+|+|++|+|.+ ||.++.+++..++|++||||||+|.+|++||++||.+..
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 579999999999999999999999999999999997531
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 887 ------------------------------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 887 ------------------------------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
..++++++++++.+++++++.++|.|++|.+++.+.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 13567899999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCc-----------------
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSG----------------- 997 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G----------------- 997 (1171)
||+++|+|||||||||+||+.+++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999986 479999999999999889999999986
Q ss_pred ------------------------------EEEEecChhHHhhcCCChHHHHHHhh
Q 001055 998 ------------------------------RVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 998 ------------------------------~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
+|+|+|+|+||+++..+.|+.++..+
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986678999988654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-59 Score=574.61 Aligned_cols=515 Identities=16% Similarity=0.126 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 001055 471 LCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 550 (1171)
Q Consensus 471 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~ 550 (1171)
++.++........+.+++.+.+....... .....+.++.++..++.++..++....+.+...++|..++++++++|+
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~ 101 (555)
T TIGR01194 25 ALGLAGGLAIIALLASINNAIHEENFLGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPI 101 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33444444445555566666543211110 111223344555667788888999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 551 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVK 630 (1171)
Q Consensus 551 ~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 630 (1171)
.+|+++++|++++|+++|++.++..+.. ...++..++.++..+++++++.+...++++.++++.+..+.+..+..++..
T Consensus 102 ~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~ 180 (555)
T TIGR01194 102 EEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFF 180 (555)
T ss_pred HHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886643 444444444444444445555554444333333332333333333333333
Q ss_pred HHHHHhcchHHHHHHHHHccHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 631 RLDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV 708 (1171)
Q Consensus 631 ~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 708 (1171)
.......+.+.+.+.|.+.|++++|+|+.++ ...+.+.+..+...+.................++..+.+.+...+..
T Consensus 181 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (555)
T TIGR01194 181 HAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAA 260 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678889999999999999999843 33344444443333322221111111111111111111111111110
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc---cCCCCC--CCCCCC
Q 001055 709 VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV---IESNRP--PPGWPS 783 (1171)
Q Consensus 709 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~---~~~~~~--~~~~~~ 783 (1171)
.. +..+ ...+..++.+...+..++..+.......+....+.+|+.++++.+.+++.. .+.... .+....
T Consensus 261 ~~-~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (555)
T TIGR01194 261 MF-ASID-----AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKS 334 (555)
T ss_pred Hh-cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCC
Confidence 11 1111 112222333344455666666777777888899999999987542221110 000000 011112
Q ss_pred CccEEEEeeEEEeCCC---CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 784 SGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~---~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+.|+++||+|+|+++ .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..++
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred CceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3569999999999753 2369999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|++++||||++.+|++|+++|+. .+.++++++++++.++++++++.+|.|++|. .+|||||||||+||||+++
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLE 487 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999963 3456788999999999999999999999985 6799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHH-H-cCCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIRE-E-FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~-~-~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
+|+||||||||++||+++++.+++.+.+ . .+++|+|+||||++++..||+|++|++|++++.
T Consensus 488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999887643 3 358999999999999988999999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=594.68 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=160.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999985 1599
Q ss_pred EEcCCcccc-cccHHhhccCCCC-CC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSPVLF-SGTVRFNLDPFSE-HS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~~lf-~~tv~~nl~~~~~-~~-~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|+||++.++ +.||++|+..... .. ...+. +.++. .|++...+....+|||||||||+|||||+.+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~--l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKP--LQLERLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHH--CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998755 5699999864311 11 12223 33333 34555556667889999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
+||||||||++||+.+...+.+.|+++.. ++|+|+||||++++.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998753 7899999999999987 999999965 8877776
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-61 Score=566.07 Aligned_cols=383 Identities=25% Similarity=0.364 Sum_probs=334.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP-- 82 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-- 82 (1171)
..++++..++.+++.+++..+..+...|.+++|||||+|+.|+....++.+.-+...+..+|.....+++....+...
T Consensus 305 ~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~ 384 (716)
T KOG0058|consen 305 AKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNL 384 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhH
Confidence 345666778889999999999999999999999999999999999998887777666666665554444433333222
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC-CCCC
Q 001055 83 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLP 161 (1171)
Q Consensus 83 ~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~ 161 (1171)
..+.++++|.+++..|.||++.+.+++.+-..+..++..+...+..++++..|..|+.|+++.+++........+ .-..
T Consensus 385 ~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G 464 (716)
T KOG0058|consen 385 AVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQG 464 (716)
T ss_pred HHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccc
Confidence 335567789999999999999999999999999999999999999999999999999999998775433211111 2234
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i 229 (1171)
.|+|+||+|+||.+++.++|+|+||+|+|||+||||||||+||||+.++|..+|+|++|.+. .+|.+|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 69999999999998888999999999999999999999999999999999999999998753 256789
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+|.|+|.||++||+|||.+|.+ .+++++.++++.++.++++..+|+|++|.+||+|..|||||||||||||||++||.
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC
Confidence 99999999999999999999965 46788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc-hHHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMEN 387 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 387 (1171)
||||||+||+||.+++..+-+.+-+ ..+++|||+|+|+++.++.+|+|+++++|++++.|+++|++++. +.|.+++..
T Consensus 625 VLILDEATSALDaeSE~lVq~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~ 703 (716)
T KOG0058|consen 625 VLILDEATSALDAESEYLVQEALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQR 703 (716)
T ss_pred EEEEechhhhcchhhHHHHHHHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHH
Confidence 9999999999999999888775533 44679999999999999999999999999999999999999887 789988865
Q ss_pred h
Q 001055 388 A 388 (1171)
Q Consensus 388 ~ 388 (1171)
+
T Consensus 704 q 704 (716)
T KOG0058|consen 704 Q 704 (716)
T ss_pred h
Confidence 4
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=558.69 Aligned_cols=442 Identities=24% Similarity=0.357 Sum_probs=341.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.++++|++++|+. -++|++|||++++||++||+|+||||||||+|+|+|.++|++|.+.. ...
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 46899999999974 47999999999999999999999999999999999999999986543 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCC-------HHHHHH----HHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEK----AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~-------~~~~~~----~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.|+.|+|+..|+ +.||.|||.+|+... ..++.+ +++..++. . .......+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~----------~-~~~~~v~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD----------I-DPDTLVGDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC----------C-ChhhhhhhCCHHHHH
Confidence 599999999986 789999999986432 222222 22222221 0 134456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh-hH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF-ED 373 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~ 373 (1171)
-|+|||||..+++|+|||||||+|++...+.+|+.+.+.+.+|.++|+|||+++++.. ||||.+|.||+.+..++. ++
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9999999999999999999999999999999999888888899999999999999865 799999999998865431 11
Q ss_pred HhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHH
Q 001055 374 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVL 453 (1171)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 453 (1171)
+..
T Consensus 233 ~~~----------------------------------------------------------------------------- 235 (500)
T COG1129 233 TSE----------------------------------------------------------------------------- 235 (500)
T ss_pred CCH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 454 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 533 (1171)
Q Consensus 454 ~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 533 (1171)
T Consensus 236 -------------------------------------------------------------------------------- 235 (500)
T COG1129 236 -------------------------------------------------------------------------------- 235 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 534 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 613 (1171)
Q Consensus 534 ~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 613 (1171)
+.+ +..+.
T Consensus 236 ------------------------------------~~l-------v~~Mv----------------------------- 243 (500)
T COG1129 236 ------------------------------------DEL-------VRLMV----------------------------- 243 (500)
T ss_pred ------------------------------------HHH-------HHHhh-----------------------------
Confidence 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 614 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 693 (1171)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1171)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T COG1129 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccC
Q 001055 694 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773 (1171)
Q Consensus 694 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 773 (1171)
+. . +.+. .+. + ..
T Consensus 244 -----------------Gr-----------------------------------------~---~~~~--~~~--~-~~- 256 (500)
T COG1129 244 -----------------GR-----------------------------------------E---LEDL--FPE--P-PE- 256 (500)
T ss_pred -----------------Cc-----------------------------------------c---hhhh--ccc--c-cc-
Confidence 00 0 0000 000 0 00
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC
Q 001055 774 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853 (1171)
Q Consensus 774 ~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~ 853 (1171)
. .+....++++|++.. ..++|+||++++||++||.|--|||+|-|+++|+|..++.+|+|.+||+++.
T Consensus 257 ~------~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~ 324 (500)
T COG1129 257 E------GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324 (500)
T ss_pred c------CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence 0 001123778887653 2589999999999999999999999999999999999999999999999998
Q ss_pred CCChH-HHhhheEEEcCCc---ccc-cccHHhhccCCC--CCCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001055 854 KFGLM-DLRKILGIIPQSP---VLF-SGTVRFNLDPFS--EHSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925 (1171)
Q Consensus 854 ~~~~~-~~r~~i~~v~Q~~---~lf-~~tv~~nl~~~~--~~~~~-~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LS 925 (1171)
-.++. ..+..|+|||.|. -+| ..+|++|+.... ..... -+....++..+.+++.++...... ......+||
T Consensus 325 ~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LS 403 (500)
T COG1129 325 IRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLS 403 (500)
T ss_pred CCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCC
Confidence 77766 4677899999986 355 559999996431 11111 244445556667777776433222 235567899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||++||+.|||+|..+|+||||||||.|+|..++++|++.|+++. +|.+||+||.++.++.. ||||+||.+|+|+..=
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999987 47999999999999886 9999999999999864
Q ss_pred Ch
Q 001055 1004 TP 1005 (1171)
Q Consensus 1004 ~~ 1005 (1171)
+.
T Consensus 484 ~~ 485 (500)
T COG1129 484 DR 485 (500)
T ss_pred cc
Confidence 33
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=528.31 Aligned_cols=486 Identities=25% Similarity=0.383 Sum_probs=368.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 525 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604 (1171)
Q Consensus 525 ~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1171)
++...+..+...+--..|.|+.++.+.|.-+..+|.+...+..-...|+..+...+...+..++.+....+..+....+.
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 44555666777777888999999999999887777665555444444444444445555555555544444333332222
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 605 LWAIMPLLLLFYAAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 683 (1171)
Q Consensus 605 ~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1171)
+..+..+.++.|..+... ....-..++....+.+...+.-.+++-+..++|.|+.|++....+...++.+.+.......
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 222222333333333322 1222234455555566677788899999999999999999999998888888777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001055 684 ANRWLAIRLEIVGGLMIWLT---ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGN 760 (1171)
Q Consensus 684 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~ 760 (1171)
.-.|+.+....+........ ....+.. +..+ .......-.+..++..++..+...+..+.+....++++.+
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~-g~~T-----vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfd 238 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSALGVEE-GQLT-----VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHHHHhh-ccCC-----chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHH
Confidence 55555554443322211111 1111111 1111 1112223334445555555566666667777788888888
Q ss_pred hhcCCCCCCcccCCCCCCCCC-CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 761 YIELPSEAPLVIESNRPPPGW-PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 761 ~~~~~~e~~~~~~~~~~~~~~-~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+.+.+.+.. +....++-| -..|.+.|+||+|.|.+. +++|+++||++++|+++||||++|+||||++++|.|+|+
T Consensus 239 Ll~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 239 LLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred hhccchhhc---cCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 776655432 222233344 335679999999999876 489999999999999999999999999999999999999
Q ss_pred CCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhh
Q 001055 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918 (1171)
Q Consensus 840 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~ 918 (1171)
+++|.|.+||+|+.......+|+.||+||||..||+.|+..|+.+.. ..+++++..+++.+.++++++.+|+|+++.++
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999998765 46899999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
++|-.|||||||||+|||+++++|+||+|||+||+||..|++.|+..|++...++|.++|+||++++.+||.|+||++|+
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhhcCCChHHHHHH
Q 001055 999 VLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 999 i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
|+|.|+|+||+++ ++.|.+|+.
T Consensus 475 i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 475 IVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEecCcHHHHHHc-CChHHHHhc
Confidence 9999999999987 788988874
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=623.92 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCC-----------CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEec
Q 001055 786 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 852 (1171)
Q Consensus 786 ~i~~~~vs~~y~~-----------~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i 852 (1171)
.+.++||++.++. +...+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123699999999999999999999999999999999999774 689999999876
Q ss_pred CCCChHHHhhheEEEcCCcccccc-cHHhhccCCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcC-
Q 001055 853 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEA- 920 (1171)
Q Consensus 853 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~------~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~- 920 (1171)
. ....|+.+|||+|++.++.. ||+|||.+.. ..+++ .+.+.++..++.+.. ++.++..
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 4 24567789999999987764 9999996421 11222 234445554444322 2333322
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh-h-hhcCEEEEEeC-
Q 001055 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 996 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~i~vl~~- 996 (1171)
...|||||||||+|||+|+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++. + +.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 25799999999999999999999999999999999999999999999875 47999999999984 4 45999999996
Q ss_pred cEEEEecChh
Q 001055 997 GRVLEYDTPE 1006 (1171)
Q Consensus 997 G~i~~~g~~~ 1006 (1171)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-60 Score=579.86 Aligned_cols=380 Identities=27% Similarity=0.433 Sum_probs=338.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL 84 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1171)
..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..+|++...+.++...+..........+...+..+
T Consensus 310 ~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999999999999999888888666666666655554444433
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCCCCC
Q 001055 85 --VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGL 160 (1171)
Q Consensus 85 --~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~ 160 (1171)
+.+++||+++++.|.+|.|.++++.++...+..|+..+.+.+..+.+++++.+|+.++++.+++...+.. ..+.-.
T Consensus 390 ~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~ 469 (709)
T COG2274 390 SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQ 469 (709)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccC
Confidence 4568899999999999999999999999999999999999999999999999999999998765433221 112223
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~ 228 (1171)
..|+++|++|+|+.. ++++|+|+||+|++||++||||+||||||||+|+|+|+++|++|.+. .+|+.
T Consensus 470 g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 470 GEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred ceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 469999999999854 45799999999999999999999999999999999999999998753 25678
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
||||+|++.+|++||+|||.++.+. +.+++.++++.++.++++..+|.|++|.+||+|.+||||||||++|||||+++|
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999875 458899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+|||||||||+||+++++.+.+.+.+. ..|+|+|+|||+++.+..||||++|++|+|+++|+++++++.++.|..++.
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~-~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~ 706 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHH-hcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHh
Confidence 999999999999999999999987654 467999999999999999999999999999999999999998888887764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=596.89 Aligned_cols=470 Identities=20% Similarity=0.262 Sum_probs=346.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+....++..+|++++++|..++.+.++|+++|++++|++.++.... .+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888899999999999999999999999999999999987653 3333333333333333332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+.++++++++++..++.+..++.++..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333333444444444444455566778899999999999999999999988887766655444333322222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 687 WLAIRLEIVGGL-MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 687 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
+..+.......+ .++.++.+.+. ++..+.. .+..++++...+..++..+......+.....+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~-~g~Lt~g-----~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLL-GGDLTPA-----RAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 222222222111 11122222222 3333322 1222233333444555566666777788899999999998655
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-c
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-G 843 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~-G 843 (1171)
+..+. ...+. .+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |
T Consensus 599 e~~~~---~~~~~--~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG 673 (1622)
T PLN03130 599 ERVLL---PNPPL--EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673 (1622)
T ss_pred ccccc---cCCcc--cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc
Confidence 43211 00000 1123469999999999742 2479999999999999999999999999999999999999999 9
Q ss_pred eEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001055 844 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~ 923 (1171)
+|.+ |.+|+||||+|.+|++||||||.++.+.++++++++++.|++.+.++.+|.|++|.++++|.+
T Consensus 674 ~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred eEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 9974 458999999999999999999998877888999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHH-HHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
|||||||||+||||++++|+|||||||||+||+++.+.+. +.++...+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999998775 567766678999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHh
Q 001055 1003 DTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1003 g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|+++|++++ .+.|.++...
T Consensus 821 Gt~~eL~~~-~~~~~~l~~~ 839 (1622)
T PLN03130 821 GTYEELSNN-GPLFQKLMEN 839 (1622)
T ss_pred CCHHHHHhc-chhHHHHHHh
Confidence 999999875 3566666544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-59 Score=524.39 Aligned_cols=453 Identities=24% Similarity=0.382 Sum_probs=342.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.++++++++.|+ +-.+++||||+|++||++||+|+||+|||||+++|.|.++|++|.+.+ .+.
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 357999999999999999999999999999999999999999987643 233
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
.||+|+|++.|+ +.||.|||.+|.+. +.....+.++.......+...| .+....||-|+||||.|-
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-------~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-------DAKVADLSVGEQQRVEIL 152 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-------cceeecCCcchhHHHHHH
Confidence 599999999997 68999999999653 2222222222211111122222 344578999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcch
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
+|||++|++|||||||+.|-|...+.+|+.+.+....|+|||+|||.+.++.. |||+.+|.+|+++..-++ ...
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~~--- 227 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VAE--- 227 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CCC---
Confidence 99999999999999999999999999999988888899999999999999876 799999999997642110 000
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 380 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
. . .++
T Consensus 228 ---------------------------------------------~-------t-----~~e------------------ 232 (501)
T COG3845 228 ---------------------------------------------T-------T-----EEE------------------ 232 (501)
T ss_pred ---------------------------------------------C-------C-----HHH------------------
Confidence 0 0 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
+.++
T Consensus 233 ----------------------la~l------------------------------------------------------ 236 (501)
T COG3845 233 ----------------------LAEL------------------------------------------------------ 236 (501)
T ss_pred ----------------------HHHH------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
+.+.. +..+.+ ..+
T Consensus 237 ---------MvG~~------------------------------------------------v~~~~~---------~~~ 250 (501)
T COG3845 237 ---------MVGRE------------------------------------------------VVLRVV---------KPP 250 (501)
T ss_pred ---------hcCCc------------------------------------------------cccccc---------cCC
Confidence 00000 000000 001
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec-CCCChH
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLM 858 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i-~~~~~~ 858 (1171)
..|....++++|++..-+.. .+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+|+ ...++.
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 11223358999999976543 3689999999999999999999999999999999999999999999999997 677888
Q ss_pred HHhh-heEEEcCCcc----cccccHHhhccCCCC----C-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 859 DLRK-ILGIIPQSPV----LFSGTVRFNLDPFSE----H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 859 ~~r~-~i~~v~Q~~~----lf~~tv~~nl~~~~~----~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.+|+ .++|||.|.. ..+.|+.||+.+... + +..-+..-.-.....+.++.+...- .-......+||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 8765 4999999983 446699999853211 1 1111111111122344555532221 11233456899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1006 (1171)
+||+-+||-|.++|++||..+||.|||..+.+.|++.|.+... |+.|++||-+++++.. ||||.||.+|+|+....++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 9999999999999999999999999999999999999988764 7899999999999877 9999999999999887766
Q ss_pred H
Q 001055 1007 E 1007 (1171)
Q Consensus 1007 e 1007 (1171)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=597.53 Aligned_cols=471 Identities=19% Similarity=0.238 Sum_probs=346.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+....++..+|++++++|..++++.++|+++|++++|++.++... ..+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56677777788889999999999999999999999999999999998764 23333333333333333222221111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+.++++++++++..++.+...+.++..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233333333444444444455566678899999999999999999999988887766655544433322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 687 WLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 687 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
+..+.......++. +..+.+.+. ++..+. ..+..++.+...+..++..+............+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt~-----g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 525 FNSFILNSIPVVVTLVSFGVFVLL-GGDLTP-----ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22222222111111 122222232 232222 12222333344445556666667777788899999999998765
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
++... ...+ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|.
T Consensus 599 ~~~~~---~~~~--~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~ 673 (1495)
T PLN03232 599 ERILA---QNPP--LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673 (1495)
T ss_pred ccccc---ccCC--cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence 43211 0000 01123469999999999752 347999999999999999999999999999999999999999987
Q ss_pred EEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 845 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
+. .+|.+|+||||+|.+|++||||||.++.+.++++++++++.|++.+.++.+|+|++|.++++|.+|
T Consensus 674 i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 674 SV------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred EE------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 63 257789999999999999999999988778889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHH-HHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK-TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
||||||||+||||++++|+|||||||||+||+++++.+.+ .+....+++|+|+|||+++.+..||+|++|++|+|++.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999998765 466666789999999999999999999999999999999
Q ss_pred ChhHHhhcCCChHHHHHHh
Q 001055 1004 TPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1004 ~~~el~~~~~~~~~~~~~~ 1022 (1171)
+|+|++++ .+.|.++...
T Consensus 822 t~~eL~~~-~~~~~~l~~~ 839 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMEN 839 (1495)
T ss_pred CHHHHHhc-chhHHHHHHh
Confidence 99999975 3567666544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=545.96 Aligned_cols=470 Identities=16% Similarity=0.137 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001055 515 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 594 (1171)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~ 594 (1171)
..++.+++.++....+.+...++|..++++++++|+.+|+++++|++++|+++|++.+...+. .+..++..++.++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345667788888889999999999999999999999999999999999999999999876443 2334444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhH---HHHHHHHHHHH
Q 001055 595 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADINGKSM 671 (1171)
Q Consensus 595 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~---~~~~~~~~~~~ 671 (1171)
++++++.+...++++.++++.+.+..++.+..++..+......+.+.+.+.|.++|+++++ ++.+ +++.+.+.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 5555555544443333333333333333333333334444556778899999999999995 4332 34444454444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 672 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENS 751 (1171)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 751 (1171)
+...+.....................+ +++.+.+.... .... .....+.+..+...+..++..+..........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANS-LGWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322211111111111111111111 11111111100 0000 01111112222223445566666666677788
Q ss_pred HHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHH
Q 001055 752 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831 (1171)
Q Consensus 752 ~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl 831 (1171)
..+.+|+.++.+.+.+.+.. ...+ .+..+.++++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+
T Consensus 293 ~~a~~ri~~l~~~~~~~~~~--~~~~---~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEFP--RPQA---FPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred HHHHHHHHHHhccccccccc--cccc---cCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 89999999886544332110 1100 1112469999999999743 3699999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccC
Q 001055 832 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL 911 (1171)
Q Consensus 832 ~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~ 911 (1171)
++|+|+++|++|+|.+||+++++.+...+|++|+||||++.+|++|+++| ....+++++.++++.+++...+.. +.
T Consensus 367 ~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~ 442 (547)
T PRK10522 367 MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-ED 442 (547)
T ss_pred HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cc
Confidence 99999999999999999999999999999999999999999999999998 223456666666666665554432 22
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcC
Q 001055 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD 989 (1171)
Q Consensus 912 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d 989 (1171)
|. ..|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|.+.. .++|+|+||||++.+..||
T Consensus 443 ~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 443 GR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred cC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 21 1367899999999999999999999999999999999999999999987654 4799999999999999999
Q ss_pred EEEEEeCcEEEEe-cChhH
Q 001055 990 RILLLDSGRVLEY-DTPEE 1007 (1171)
Q Consensus 990 ~i~vl~~G~i~~~-g~~~e 1007 (1171)
+|++|++|++++. |++.+
T Consensus 518 ~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 518 RLLEMRNGQLSELTGEERD 536 (547)
T ss_pred EEEEEECCEEEEecCCchh
Confidence 9999999999987 44433
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=572.42 Aligned_cols=378 Identities=23% Similarity=0.297 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL 84 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1171)
..++.+++++..++.++..+++.+.+.|.++|+++||.++.|+.+..+|.+..++..+...+..........+...+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 371 (686)
T TIGR03797 292 TLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVL 371 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888889999999999999999999999999999999999998877777766655555555444443333322
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCc
Q 001055 85 --VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA 162 (1171)
Q Consensus 85 --~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 162 (1171)
+.++++|++.+..|.+|.|.++++..++..+..|+..++..+..+.++..+++|+.++++.+++..............
T Consensus 372 ~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~ 451 (686)
T TIGR03797 372 TSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGA 451 (686)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCce
Confidence 334567888889999999999999999999999999999999999999999999999998754322111111111235
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|++. ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|.+.. +|+.||
T Consensus 452 I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 452 IEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred EEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 9999999999743 468999999999999999999999999999999999999999986532 356799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
||||+|++|++||+|||.++.+.+++++.++++.+++.++++.+|.|++|.+|++|.+||||||||++|||||+++|++|
T Consensus 531 ~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 531 VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
|||||||+||+++++.+.+.+.+. ++|+|+|||+++.+..+|+|++|++|+++++|++++++++.+.|..++.
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~ 683 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 999999999999999999987654 5899999999999999999999999999999999999988888887764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-56 Score=498.99 Aligned_cols=484 Identities=20% Similarity=0.244 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 001055 508 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 587 (1171)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~ 587 (1171)
...+.++..++..+++.++...+.+...++...+|...++.|..--........ -.|.+.+..++...-...+...
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCC
Confidence 344556677888999999999999999999999999988766553322212211 1355555544332111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHH
Q 001055 588 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 667 (1171)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~ 667 (1171)
--.-..+.+++.+.++..++.+.-.++++...++-....++--+...+.......+...+.++.++|+++++.....+.+
T Consensus 145 PW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 145 PWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 11111223333444444443333333322222222222222222333334445567778999999999999877666666
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH---HHHHH
Q 001055 668 GKSMDKNIRY----TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT---SLLTA 740 (1171)
Q Consensus 668 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~~~~ 740 (1171)
.+....+... ...+..........-..+...+...++++.+ .+ . .+.|.+++-+.... .++..
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi-~g-e--------~t~G~mIA~SIl~gRaLaPid~ 294 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVI-KG-E--------ITPGMMIAGSILSGRALAPIDL 294 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEE-cC-c--------CCcchhhHHHHHhhhhhccHHH
Confidence 5544433332 2222221111111111122222222222222 21 1 12233333333322 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEE
Q 001055 741 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 820 (1171)
Q Consensus 741 ~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~iv 820 (1171)
....|..+.....+..|+.+++...++.... . +....++.+.++++++.=++..+++|+|+||++.+||-+|||
T Consensus 295 aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m--~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgII 368 (580)
T COG4618 295 AIANWKQFVAARQSYKRLNELLAELPAAAER----M--PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGII 368 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCC----C--CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEE
Confidence 5566667777888999999998655443211 1 111235789999999977766679999999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHH
Q 001055 821 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALER 899 (1171)
Q Consensus 821 G~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~ 899 (1171)
||||||||||.|+|.|.++|.+|.|++||-|+.+++++++=++|||+||+..||+|||+|||.-|. +.+++.+.++++.
T Consensus 369 GPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~l 448 (580)
T COG4618 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARL 448 (580)
T ss_pred CCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998665 5677889999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEE
Q 001055 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLII 978 (1171)
Q Consensus 900 ~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~v 978 (1171)
+++||.|.++|+||||.+++.|..||||||||++|||||+.+|.+++||||-|+||.+-|+.+.++|.+.. +|+|+|+|
T Consensus 449 AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvi 528 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528 (580)
T ss_pred cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 58999999
Q ss_pred ecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 979 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||.+.+..+|+|++|++|++..+|+.+|++++
T Consensus 529 aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-57 Score=570.13 Aligned_cols=376 Identities=26% Similarity=0.368 Sum_probs=325.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL- 84 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~- 84 (1171)
.++.++.++..++.++..+++.+.+.|.++++++||.+++|+.+.++|.+...+..+...+..........+...+..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 390 (710)
T TIGR03796 311 QLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLN 390 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888889999999999999999999999999999999988888877666555555444433333322
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC------CCC-
Q 001055 85 -VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN------PPL- 156 (1171)
Q Consensus 85 -~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~------~~~- 156 (1171)
+.++++|++.+..|.+|.|.++++..++..+..|+..++..+..+.++..+++|+.++++.+++..... ...
T Consensus 391 ~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~ 470 (710)
T TIGR03796 391 SALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP 470 (710)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccc
Confidence 345667889999999999999999999999999999999999999999999999999998754322111 011
Q ss_pred -CCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------
Q 001055 157 -TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 224 (1171)
Q Consensus 157 -~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------- 224 (1171)
......|+++|++|+|+. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 471 ~~~~~~~I~~~~vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 471 SPRLSGYVELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPRE 549 (710)
T ss_pred CCCCCCeEEEEEEEEecCC-CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHH
Confidence 111236999999999984 3468999999999999999999999999999999999999999986532
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 225 -IRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 225 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
+++.||||||+|++|++||+|||.++. ..+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+||||
T Consensus 550 ~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred HHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999875 467889999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHH
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 382 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 382 (1171)
|+++|+++|||||||+||+++++.+.+.+.+ .++|+|+|||+++.+..||||++|++|+++++|+++++++..+.|+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~ 706 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYA 706 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHH
Confidence 9999999999999999999999999998764 4799999999999999999999999999999999999998877777
Q ss_pred HHH
Q 001055 383 KLM 385 (1171)
Q Consensus 383 ~~~ 385 (1171)
+++
T Consensus 707 ~l~ 709 (710)
T TIGR03796 707 RLI 709 (710)
T ss_pred HHh
Confidence 654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=518.82 Aligned_cols=383 Identities=25% Similarity=0.417 Sum_probs=326.5
Q ss_pred CcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001055 1 MFPVQTFIISR-MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQ----NVRNDELSWFRKAQFLAACNS 75 (1171)
Q Consensus 1 ~~p~~~~~~~~-~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~----~~r~~e~~~~~~~~~~~~~~~ 75 (1171)
++|+++++..+ .++..++++....+-.+.+-+.++|+.|+|.|+..+...+++. +.|+..++..|.. ++++...
T Consensus 152 lIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriA-flSs~vL 230 (559)
T COG4988 152 LIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA-FLSSAVL 230 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 36787777665 5677888899999999999999999999999999987777664 4677777776554 4455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 001055 76 FILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP 155 (1171)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~ 155 (1171)
-++.+..+.++++.+|..++..|+++....++++.+...+..|++.+...+|.-.++..+.+.+..|++.+........+
T Consensus 231 effa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~ 310 (559)
T COG4988 231 EFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEK 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc
Confidence 44455555556666665544438999999999999999999999999999999999999999999999877643222211
Q ss_pred -CCCCCCc--EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------
Q 001055 156 -LTSGLPA--ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------- 224 (1171)
Q Consensus 156 -~~~~~~~--i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------- 224 (1171)
.....+. ++.+|++|.|+++ +++++|+||++++|++++|||+||||||||+++|+|+.+|++|.+..
T Consensus 311 ~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l 388 (559)
T COG4988 311 AEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL 388 (559)
T ss_pred cccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc
Confidence 1122223 4555999999853 48999999999999999999999999999999999999999886543
Q ss_pred ----ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 225 ----IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++++++||||+|.+|.+|++|||.++++ .+++++.++++.+++.++++. |+|.+|.+|++|.+|||||+|||+|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaL 467 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLAL 467 (559)
T ss_pred CHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHH
Confidence 4567999999999999999999999976 567899999999999999999 9999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcch
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
||||+++++++||||||+|||+++++.+.+.+.+.. +++|+++||||++.+..+|+|++|++|+++++|+++++..+++
T Consensus 468 ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCc
Confidence 999999999999999999999999999998776654 5699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001055 380 LFQKLMENA 388 (1171)
Q Consensus 380 ~~~~~~~~~ 388 (1171)
.|++++..+
T Consensus 547 ~y~~l~~~q 555 (559)
T COG4988 547 LYANLLKQQ 555 (559)
T ss_pred HHHHHHHHH
Confidence 999998653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=555.48 Aligned_cols=374 Identities=24% Similarity=0.362 Sum_probs=301.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSW----FRKAQFLAACNSFILNSIP 82 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~----~~~~~~~~~~~~~~~~~~~ 82 (1171)
++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+. .+.......+..++.. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 260 (588)
T PRK11174 182 LVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFAS-IS 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 345667777888888999999999999999999999999999988886544433333 2222222222222211 11
Q ss_pred HHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 001055 83 VLVTVVSFGMFTLLGGDLTPA---------RAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN 153 (1171)
Q Consensus 83 ~~~~~~~~g~~~~~~~~l~~~---------~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 153 (1171)
.++ ++.++.+.+. |.+|.| .+++++.+...+..|+..++..+..+.++..+++||.++++.+++.....
T Consensus 261 ~~~-~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 338 (588)
T PRK11174 261 IAL-VAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQG 338 (588)
T ss_pred HHH-HHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 212 2223333333 555544 34555566777889999999999999999999999999998764321111
Q ss_pred C-CCC-CCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------
Q 001055 154 P-PLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------- 224 (1171)
Q Consensus 154 ~-~~~-~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------- 224 (1171)
. ..+ .....|+++|++|.|++ ++++|+|+||++++|+++|||||||||||||+++|+|++ |++|.+..
T Consensus 339 ~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 339 EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE 415 (588)
T ss_pred ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence 1 111 12235999999987753 367999999999999999999999999999999999999 88876532
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
+++.|+||||+|++|++||+|||.+|.+ .+++++.++++.|++++++..+|+|++|.+|++|.+||||||||++
T Consensus 416 ~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 416 LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred CCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 3457999999999999999999999954 7889999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
|||||+++|+|||||||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..+|+|++|++|+++++|+++++.++.
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc
Confidence 999999999999999999999999999999876554 4689999999999999999999999999999999999999988
Q ss_pred hHHHHHHHH
Q 001055 379 ELFQKLMEN 387 (1171)
Q Consensus 379 ~~~~~~~~~ 387 (1171)
+.|++++..
T Consensus 575 ~~y~~l~~~ 583 (588)
T PRK11174 575 GLFATLLAH 583 (588)
T ss_pred hHHHHHHHH
Confidence 888888754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-56 Score=561.63 Aligned_cols=376 Identities=24% Similarity=0.354 Sum_probs=316.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+..++..........+...+. .
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (711)
T TIGR00958 319 KVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLI 398 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888889999999999999999999999999888887766655554444433333332222222 1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC-CCCCc
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLPA 162 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~~ 162 (1171)
.+.++.+|.+.+..|.+|++.+++++.+...+..|+..++..+..+.++..+++||.++++.+++...+....+ +....
T Consensus 399 ~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 478 (711)
T TIGR00958 399 QVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGL 478 (711)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCe
Confidence 23445678888899999999999999999999999999999999999999999999999987653221111111 12235
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|++.+++++|+|+||++++||+++||||||||||||+++|+|+++|++|.+.. ++++|+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 558 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce
Confidence 99999999998544578999999999999999999999999999999999999999986532 345799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 559 ~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I 638 (711)
T TIGR00958 559 LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638 (711)
T ss_pred EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999854 567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 384 (1171)
+|||||||+||+++++.+.+ .. ..+++|+|+|||+++.+..+|+|++|++|+|+++|++++++++.+.|+++
T Consensus 639 LILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 639 LILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 99999999999999999987 22 23689999999999999999999999999999999999998877666654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=562.64 Aligned_cols=377 Identities=25% Similarity=0.389 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+..++.+...+..+...+..........+...+. .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (708)
T TIGR01193 313 ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLIL 392 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888999999999999999999999999999999999988777666554444433333333222222 1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CCCCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~ 161 (1171)
.+.++++|++.+..|.+|+|.++++..++..+..|+..+...+..+.+++.+++|+.++++.+++...+. ........
T Consensus 393 ~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~ 472 (708)
T TIGR01193 393 NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNG 472 (708)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCC
Confidence 2345678999999999999999999999999999999999999999999999999999998765322111 11112223
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|.+.. +|+.|
T Consensus 473 ~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 473 DIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred cEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 6999999999973 468999999999999999999999999999999999999999986532 35579
Q ss_pred EEEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
|||||+|++|++||+|||.++. ..+++++.++++.+++.+++..+|.|++|.+|++|.+||||||||++|||||+++|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999983 45778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
++||||||||+||+++++.+.+.+.+. +++|+|+|||+++.+..||+|++|++|+++++|+++++++..+.|+.++.
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 999999999999999999999988653 57999999999999999999999999999999999999988777877653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-56 Score=558.85 Aligned_cols=370 Identities=28% Similarity=0.429 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (694)
T TIGR03375 303 LLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLV 382 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788889999999999999999999999999999999999999998888777766666555554433333322
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC--CCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP--LTSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~~~~ 161 (1171)
.+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+..+.++++|+.++++.+++....... .+....
T Consensus 383 ~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~ 462 (694)
T TIGR03375 383 SVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQG 462 (694)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccc
Confidence 234566788999999999999999999999999999999999999999999999999999876532211111 111223
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. ++..|
T Consensus 463 ~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 6999999999974 3468999999999999999999999999999999999999999986532 35679
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999975 67899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
++|||||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|+++++|+++++++.
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999977654 357999999999999999999999999999999999998653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=547.34 Aligned_cols=380 Identities=24% Similarity=0.319 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (582)
T PRK11176 183 RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLA 262 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888999999999999999999999999999998877766666555544444433333333222
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcE
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 163 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i 163 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++........++....|
T Consensus 263 ~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i 342 (582)
T PRK11176 263 LAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDI 342 (582)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeE
Confidence 23345567788888999999999999999999999999999999999999999999999976543221111111222359
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .++.|+|
T Consensus 343 ~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 343 EFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 99999999974 3468999999999999999999999999999999999999999886532 3457999
Q ss_pred EecCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 232 VPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|||+|.+|++||+|||.+|.+ .++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred EccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999999853 578899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||+||+++++.+++.+.+. .+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|++++..
T Consensus 502 lilDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 502 LILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 9999999999999999999887654 3579999999999999999999999999999999999999888888888753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=563.84 Aligned_cols=530 Identities=18% Similarity=0.250 Sum_probs=370.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhhccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 470 LLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP---LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 546 (1171)
Q Consensus 470 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 546 (1171)
+++.++...+....|..+...++......... ..+...++++.++..++.....+.....+.+....+...+|+|++
T Consensus 323 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666655544321111111 112222333333444444444555677888899999999999999
Q ss_pred cCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 547 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 626 (1171)
Q Consensus 547 ~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 626 (1171)
++|..+++..+.|+++|+++.|+..+.... ..+..+....+.++..++++.....+..++.+.++++++++.....+..
T Consensus 403 ~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~ 481 (1522)
T TIGR00957 403 VITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKT 481 (1522)
T ss_pred hCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987643 2333444444444433333332222222222222223333333344444
Q ss_pred HHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001055 627 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TAT 705 (1171)
Q Consensus 627 ~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 705 (1171)
+..++..........+.+.|.++|+++||.|++++.+.+.+.+..+...+..........+..+.......++.++ .+.
T Consensus 482 ~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 561 (1522)
T TIGR00957 482 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAV 561 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666778999999999999999999998888877666554443332222222221111111111111 112
Q ss_pred HHHHh-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCC
Q 001055 706 FAVVQ-NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 784 (1171)
Q Consensus 706 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~ 784 (1171)
+.+.. +...+...+| ..+++...+..++..+......+.....+.+|+.++++.+++++...+.....+ ...
T Consensus 562 ~~~~~~~~~l~~~~~f-----~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~--~~~ 634 (1522)
T TIGR00957 562 YVTVDENNILDAEKAF-----VSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP--GEG 634 (1522)
T ss_pred HHHhcCCCCcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC--CCC
Confidence 22222 2222222222 122233334456666777777788899999999999976544321111000000 112
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.++++|++|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 701 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SV 701 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EE
Confidence 36999999999975445799999999999999999999999999999999999999999999987 59
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||||+|.+|++||+|||.+..+..+++..++++.+++.+.++.+|.|++|.+++.|.+||||||||++||||++++|+|
T Consensus 702 ~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i 781 (1522)
T TIGR00957 702 AYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 781 (1522)
T ss_pred EEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987666667778888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHH---HcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 945 LVLDEATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~---~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+|||||||+||+.+++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++.. +.|.++..
T Consensus 782 llLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l~~ 860 (1522)
T TIGR00957 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD-GAFAEFLR 860 (1522)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc-hhHHHHHH
Confidence 999999999999999999999864 34689999999999999999999999999999999999998753 45666554
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=536.21 Aligned_cols=379 Identities=27% Similarity=0.373 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.++.++..++..+..+++.+.+.|+++|+++||.++.++.+..++.+..++..+...+..........+...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (571)
T TIGR02203 172 RRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLA 251 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888899999999999999999999999999999999999887777666555544444443333333222
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcE
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 163 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i 163 (1171)
.+.++++|.+.+..|.+|++.+++++.++..+..|+..+.+.+..+.+++++++|+.++++.+++.........+....|
T Consensus 252 ~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i 331 (571)
T TIGR02203 252 LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDV 331 (571)
T ss_pred HHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeE
Confidence 23345678888889999999999999999999999999999999999999999999999986554221111111122359
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .++.|+|
T Consensus 332 ~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 332 EFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 999999999753 468999999999999999999999999999999999999999987543 3456999
Q ss_pred EecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 232 VPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|||+|++|++|++|||.++. +.+++++.++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+|
T Consensus 411 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i 490 (571)
T TIGR02203 411 VSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI 490 (571)
T ss_pred EccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999985 4678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
++||||||+||+++++.+.+.+.+. .+++|+|+|||+.+.+..||+|++|++|++++.|+++++.+..+.|++...
T Consensus 491 llLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 491 LILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 9999999999999999999887654 467999999999999999999999999999999999999877777777544
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=532.88 Aligned_cols=379 Identities=27% Similarity=0.432 Sum_probs=321.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VL 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 84 (1171)
++.++.++..++..+..++..+.+.|.++++++||.|+.++...+++.+..+...+...+.....+....+...+. ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (567)
T COG1132 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888888899999999999999999999999988777766555544443333333333322222211 22
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
+.++.+|.+.+..+.++++.+.+++.++..+..|+..+...+..+..+..+++|+.++++.++....+..........|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~ 330 (567)
T COG1132 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIE 330 (567)
T ss_pred HHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEE
Confidence 34456777888889999999999999999999999999999999999999999999999985532211111122223599
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|++|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|.+.. +|+.|+||
T Consensus 331 f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 331 FENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 9999999974 468999999999999999999999999999999999999999887643 35679999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 233 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
||+|++|++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|++|+
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999987 57889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 388 (1171)
||||||+||+++++.+.+.+.+.. +++|+|+|+|+++.+..||+|++|++|++++.|++++++++.+.|++++...
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999876444 6789999999999999999999999999999999999999999999998654
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-54 Score=528.39 Aligned_cols=376 Identities=21% Similarity=0.341 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--L 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (1171)
++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+.....+....+...+.. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (574)
T PRK11160 180 LFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTV 259 (574)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999999999999999887776666555544444443333332222 1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CCCCCCCCCc
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVL-RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NPPLTSGLPA 162 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~-~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~~~~~~~~~ 162 (1171)
+.++++|.+. ..|.++++.+++++.+.... ..|+..++..+..+.++..+++||.++++.+++...+ .+........
T Consensus 260 ~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 338 (574)
T PRK11160 260 VLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVS 338 (574)
T ss_pred HHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCe
Confidence 2334566666 47889999988877665443 4578888999999999999999999999875432211 1111122346
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++.|+
T Consensus 339 i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 339 LTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 9999999999742 357999999999999999999999999999999999999999986532 345699
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
||||+|++|++|++|||.++.+ .+++++.++++.+++.++++. |+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 418 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 418 VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 577889999999999999999 99999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+||||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|++++.|++++++++.+.|++++.
T Consensus 497 lilDE~ts~lD~~t~~~i~~~l~~~-~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 497 LLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999999877654 358999999999999999999999999999999999999999888888764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-54 Score=532.14 Aligned_cols=374 Identities=21% Similarity=0.299 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 001055 9 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAAC----NSFILNSIPVL 84 (1171)
Q Consensus 9 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~----~~~~~~~~~~~ 84 (1171)
.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+....... ...+...+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (592)
T PRK10790 186 QRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILC 265 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777778888999999999999999999999999887666554442222222221 11111111112
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
+.++.+| + +..|.++.+.+++++.++..+..|+..++..+..+.++..+++||.++++.+++..... ........|+
T Consensus 266 ~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~i~ 342 (592)
T PRK10790 266 GLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND-DRPLQSGRID 342 (592)
T ss_pred HHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC-ccCCCCCeEE
Confidence 2222233 3 46899999999999999999999999999999999999999999999997654321111 1111223599
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. +++.|+||
T Consensus 343 ~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 343 IDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 9999999973 357999999999999999999999999999999999999999886532 34679999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 233 PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
||+|.+|++|++|||.++.+.+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|+||
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999987788999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 388 (1171)
|||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..+|+|++|++|++++.|++++++++.+.|+.+...+
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~-~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAV-REHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999877654 35799999999999999999999999999999999999998888888887643
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=525.76 Aligned_cols=368 Identities=23% Similarity=0.324 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--L 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (1171)
++.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+..++.....+....+...+.. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (544)
T TIGR01842 160 LNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQ 239 (544)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677788888999999999999999999999999999999999887777666555444444433333222221 2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
+.++++|.+.+..|.+|++.+++++.++..+..|+..++..+..+..+..+++||.++++.+++... ....+.....|+
T Consensus 240 ~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~~~~i~ 318 (544)
T TIGR01842 240 SLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-AMPLPEPEGHLS 318 (544)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-CCCCCCCCCeEE
Confidence 3445688888999999999999999999999999999999999999999999999999976543221 111111223599
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++||
T Consensus 319 ~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 319 VENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence 9999999974 2468999999999999999999999999999999999999999986532 24569999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 233 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
||+|++|++|++|||.++.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+||||||||++|||||+++|+++|
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999986654 67788889999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||++||+++++.+.+.+.+...+++|+|+|||+++.++.||+|++|++|++++.|+++++.+
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999877665446899999999999998999999999999999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=526.03 Aligned_cols=378 Identities=22% Similarity=0.362 Sum_probs=316.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VLV 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (1171)
+.+++++..++.++..++..+.+.|.++++++||.|++|+.+.+++.+..++..+...+.....+....+...+. ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (569)
T PRK10789 157 YGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANL 236 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777788889999999999999999999999988887665554444433333333222222221 123
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEE
Q 001055 86 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 165 (1171)
Q Consensus 86 ~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 165 (1171)
.++++|.+.+..|.+|++.++++..++..+..|+..++..+..+..++.+++||.++++.+++........+.....|++
T Consensus 237 ~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~ 316 (569)
T PRK10789 237 LAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEE
Confidence 34567888889999999999999999999999999999999999999999999999997654321111111112235999
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEe
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 233 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 233 (1171)
+|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..++|+|
T Consensus 317 ~~v~~~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCC-CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 999999974 3467999999999999999999999999999999999999999986532 245699999
Q ss_pred cCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 234 QVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 234 Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
|+|++|++|++|||.++. ..+++++..+++.+++.+++..+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999985 4577888899999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..+|+|++|++|+++++|+++++.++.+.|+.++..
T Consensus 476 DEpts~LD~~~~~~i~~~l~~~-~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 549 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549 (569)
T ss_pred ECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHH
Confidence 9999999999999999987654 3689999999999999999999999999999999999999888888887754
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=485.80 Aligned_cols=375 Identities=27% Similarity=0.375 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 001055 9 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PVLVT 86 (1171)
Q Consensus 9 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~ 86 (1171)
.+...+++++..++.++..+...+.|.+-++||.|+-|+...+++...-.+.-....+.....++..+....+ ..++.
T Consensus 196 t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~ 275 (591)
T KOG0057|consen 196 TRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTF 275 (591)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999999999999998887644333332222222222222222221 12233
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEE
Q 001055 87 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIR 166 (1171)
Q Consensus 87 ~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 166 (1171)
+...|..-+..+.+|.+.+....+++.++..|+.++...+..+.++..-+.-+.......+.......+.......|+++
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~ 355 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFD 355 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEE
Confidence 34455555677899999999999999999999999999999988888877665444333222111101222222359999
Q ss_pred eeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEec
Q 001055 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQ 234 (1171)
Q Consensus 167 ~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q 234 (1171)
||+|+|++ ++++|+++||+|++||.|||||+|||||||++++|.++++ ++|.+.. +|+.||||||
T Consensus 356 dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 356 DVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 99999974 5679999999999999999999999999999999999999 7776532 5667999999
Q ss_pred CCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEe
Q 001055 235 VSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 313 (1171)
Q Consensus 235 ~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLD 313 (1171)
+..||+.||.+||.+|++ ..++++.++++.+++++.+..+|+|+.|.+|++|..|||||||||+||||+++||+|++||
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 999999999999999976 4678889999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 314 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 314 Epts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
||||+||.++++.+++.+.+ ...++|+|+|.||++.++.+|+|+++++|++.+.|++++++...+.|+.++..
T Consensus 513 EaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred CcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 99999999999999998776 55789999999999999999999999999999999999999988888887753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=537.56 Aligned_cols=378 Identities=25% Similarity=0.390 Sum_probs=325.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--L 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (1171)
++.+++++..++.++..+++.+.+.|.++|+++||.||.|+.+.+++.+..++..+...+..........+...+.. .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (694)
T TIGR01846 297 FVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF 376 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888889999999999999999999999999999999987777766655555555444433333322 2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC-CCCCCCCCcE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSGLPAI 163 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-~~~~~~~~~i 163 (1171)
+.++++|++.+..|.+|.|.++++..+...+..|+..+.+.+..+.+++.+++|+.++++.+++..... ...+.....|
T Consensus 377 ~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i 456 (694)
T TIGR01846 377 AILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAI 456 (694)
T ss_pred HHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeE
Confidence 344668889999999999999999999999999999999999999999999999999998765322111 1111122359
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. ++..|+|
T Consensus 457 ~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~ 535 (694)
T TIGR01846 457 TFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535 (694)
T ss_pred EEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence 999999999743 467999999999999999999999999999999999999999886532 3456999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 232 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
|||++.+|++||+|||.++.+ .+++++.++++.+++.+.++.+|.|++|.+|++|.+||||||||++|||||+++|+++
T Consensus 536 v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 536 VLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred EccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999754 5678899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
||||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|+++++|+++++.+..+.|++++.
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 999999999999999999987665 468999999999999999999999999999999999999988888888765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-52 Score=523.45 Aligned_cols=522 Identities=20% Similarity=0.245 Sum_probs=384.3
Q ss_pred HHHHHHHhHHhhhhhhccccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001055 475 LTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMV 551 (1171)
Q Consensus 475 l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ 551 (1171)
+........|..+...++...... .....+...+++..+...++.....+.....+.+...-+-..+|+|.+++.-.
T Consensus 212 ~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~ 291 (1381)
T KOG0054|consen 212 LRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNS 291 (1381)
T ss_pred HHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchh
Confidence 333335555666655544322221 11223333344444455555555666677788888888899999999999988
Q ss_pred ccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 552 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 631 (1171)
Q Consensus 552 ~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 631 (1171)
.-...+.|+++|-++.|++.+++..... ..+....++++.++.++.....+..++.+.++++++++..+..+...+.+.
T Consensus 292 ~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~ 370 (1381)
T KOG0054|consen 292 ARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQK 370 (1381)
T ss_pred hccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998765543 444444455555555444444444444444555666666666666666666
Q ss_pred HHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 001055 632 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV-VQ 710 (1171)
Q Consensus 632 ~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 710 (1171)
.....+......+.|.++|+++||.|.+|..|.+...+..+.-.+.-........+..+.......++.++.....+ ..
T Consensus 371 ~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~ 450 (1381)
T KOG0054|consen 371 RLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLL 450 (1381)
T ss_pred HHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66666777788999999999999999999999988877666554443333333333332222222222222111111 22
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEE
Q 001055 711 NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 790 (1171)
Q Consensus 711 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~ 790 (1171)
+...+...+| ..++....+..++..+........+..++++|+.+++..++..+...+. .+..+.+..++++
T Consensus 451 ~~~lt~~~aF-----~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~ 522 (1381)
T KOG0054|consen 451 GNLLTASTAF-----TSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIK 522 (1381)
T ss_pred CccccHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEe
Confidence 3333322222 2333333344445455556666677799999999999766544332211 1112234469999
Q ss_pred eeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcC
Q 001055 791 DVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 869 (1171)
Q Consensus 791 ~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 869 (1171)
|.+|++++. ..+.|+||||+|++|+.+||||+.|||||+|+.+|+|.++..+|+|.++|. ++||||
T Consensus 523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q 589 (1381)
T KOG0054|consen 523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQ 589 (1381)
T ss_pred eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEecc
Confidence 999999763 345999999999999999999999999999999999999999999999983 999999
Q ss_pred CcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001055 870 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949 (1171)
Q Consensus 870 ~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 949 (1171)
.|++|++||||||.++.+..++...++++.|++..-++.+|.|-.|.+||+|.+||||||||++||||++++++|+|||.
T Consensus 590 ~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred ccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCHHHHHHHH-HHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 950 ATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 950 pTs~LD~~t~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
|.|++|.++-+.|. +.|+...+++|+|+|||.++++.+||+|++|++|+|.+.|+++|+++. +..|.++
T Consensus 670 plSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l 739 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAEL 739 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHH
Confidence 99999999877655 567667789999999999999999999999999999999999999965 4456655
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=525.90 Aligned_cols=379 Identities=23% Similarity=0.339 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..........+...+. .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (588)
T PRK13657 174 TLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTIT 253 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777788888899999999999999999999999998888877666555543333322222222222211 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCC-CCCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-PNP-PLTSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~~-~~~~~~~ 161 (1171)
.+.++++|++.+..|.+|++.+++++.++..+..|+..+...+..+..+..+++|+.+++..+++... +.. .......
T Consensus 254 ~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 333 (588)
T PRK13657 254 MLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKG 333 (588)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCC
Confidence 23456678898999999999999999999999999999999999999999999999999876432111 111 1111123
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. ++..|
T Consensus 334 ~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred eEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999973 357999999999999999999999999999999999999999886532 34579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|+||+|.+|++|++|||.++.+ .+++++..+++.+++.++++.+|+|.+|.+|++|.+||||||||++|||||+++|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999854 56788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
|+|||||||+||+++++.+++.+.+. .+++|+|+||||++.+..+|+|++|++|++++.|+++++....+.|.++...
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 99999999999999999999987654 3579999999999999999999999999999999999998887888887764
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=525.81 Aligned_cols=380 Identities=26% Similarity=0.394 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PV 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++++++||.|++|+.+.+++.+..++..+..++..........+...+ ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
T TIGR02204 176 LLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGA 255 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888889999999999999999999999999999999998877766655444333333322222222 12
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CC-C-CCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-P-LTSGL 160 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~-~-~~~~~ 160 (1171)
.+.++++|++.+..|.+|++.++++..++..+..|+..++..+..+.+++.+++||.++++.+++.... .+ . ..+..
T Consensus 256 ~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 335 (576)
T TIGR02204 256 IVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLR 335 (576)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCC
Confidence 234456788888899999999999999999999999999999999999999999999999865432111 11 1 11112
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+...++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. +++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 3599999999998543468999999999999999999999999999999999999999886532 2356
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
|+|+||+|++|++||+|||.++.+ .+++++..+++.+++.+.++.+|+|++|.+|++|.+||||||||++||||++++|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999864 4678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+++|||||||+||+++++.+++.+.+. .+++|+|+|||+++.++.+|+|+++++|++++.|+++++.+..+.|+.+..
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~-~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 999999999999999999999877665 358999999999999999999999999999999999999888777777654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=518.27 Aligned_cols=510 Identities=15% Similarity=0.139 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-----FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
.+++.+++.++...+....+.+....+|.......... .+..+++++.+...+..++..++......+...++++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666777777777776665332111111 1122223333444555556666666667777777888
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAA 618 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~ 618 (1171)
..+.+....++.||+. ++|++++|+++|++.+...+...+..++..++.++..++.+.. ..+...++++.++++.+.+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888877888888886 7899999999999999888777777777776666655444443 3443333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 619 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG-- 696 (1171)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 696 (1171)
..++.+...+..+......+.+.+...|.++|+++|++|+.++...+.+.+..+...+..........++.....++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666666666666777788999999999999999999999887777766655555444443333333333333322
Q ss_pred --HHHHHHHHHH-HHHhc----CCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001055 697 --GLMIWLTATF-AVVQN----GSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766 (1171)
Q Consensus 697 --~l~~~~~~~~-~~~~~----~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~ 766 (1171)
..+.++++.. .+... +..+ ....++.++.+ ...+..++..+......++....+.+|+.++++.++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t----~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMS----EEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 22211 1111 11122223333 334455566666677778888999999999886533
Q ss_pred CCC-------cccC--CC----C----C---CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCc
Q 001055 767 EAP-------LVIE--SN----R----P---PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 826 (1171)
Q Consensus 767 e~~-------~~~~--~~----~----~---~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsG 826 (1171)
+.. ...+ .. . . .......+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsG 490 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCG 490 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCC
Confidence 210 0000 00 0 0 0000123569999999999643 36999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC--------CCCHHHHHHHHH
Q 001055 827 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--------EHSDADLWEALE 898 (1171)
Q Consensus 827 KSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--------~~~~~~i~~~l~ 898 (1171)
||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|+++|+.+.. ..+++++.++++
T Consensus 491 KSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 559 (659)
T TIGR00954 491 KSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD 559 (659)
T ss_pred HHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHH
Confidence 99999999999999999998863 56899999999999999999997531 245778899999
Q ss_pred HhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 001055 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978 (1171)
Q Consensus 899 ~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~v 978 (1171)
.+++.+++++ |.|+++..+ .+.+||||||||++|||||+++|++|||||||++||+++++.+++.+++ .++|+|+|
T Consensus 560 ~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~i 635 (659)
T TIGR00954 560 NVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSV 635 (659)
T ss_pred HcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEE
Confidence 9999999988 899999876 5678999999999999999999999999999999999999999999987 48999999
Q ss_pred ecChhhhhhcCEEEEEe
Q 001055 979 AHRLNTIIDCDRILLLD 995 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~ 995 (1171)
|||++.+..||++++|+
T Consensus 636 sH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 636 SHRKSLWKYHEYLLYMD 652 (659)
T ss_pred eCchHHHHhCCEEEEEe
Confidence 99999998899999997
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=480.78 Aligned_cols=374 Identities=25% Similarity=0.393 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 9 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTV- 87 (1171)
Q Consensus 9 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (1171)
.+..++..+...+.+..--+.+.+.+.|+...++||.++.+.+.+.+.-+...+..++...+.....++..++..++++
T Consensus 180 ~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~ 259 (573)
T COG4987 180 YRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIG 259 (573)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666667777788899999999999999999999888766666666666666666666665555444322
Q ss_pred --HHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 88 --VSFGMFTLLGGDLT-PARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 88 --~~~g~~~~~~~~l~-~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
++++ -..-.|..+ +..+...+..|..+-.-....|..+....+...|++|+.+++..+++...+++..+.....++
T Consensus 260 ~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~ 338 (573)
T COG4987 260 LLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALE 338 (573)
T ss_pred HHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceee
Confidence 2222 112235555 333333333233332111223477788999999999999999887665444222222222799
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|+||+|++ ++.++|+|+||++++||+++|+|++|||||||+++|.|.++|++|.+.. ++..|+++
T Consensus 339 ~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 339 LRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 9999999985 3568999999999999999999999999999999999999999986532 33469999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 233 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
+|.+.+|++|+|+|+.++++ .+++++.++++.++|.+.+...|+|++|++||+|..||||||||++|||+|++|++++|
T Consensus 418 ~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred ccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999976 46789999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
|||||.|||+.+++++.+.+... .+|||+|+|||++..++.+|||++|++|+++++|++++++.+.+.|.++.
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHh
Confidence 99999999999999999976654 46999999999999999999999999999999999999999888887765
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=484.16 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=164.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+.+.||+|+|+++. .++++++|.|.+++++|+|||||+|||||++++.|.+.|+.|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 499999999998764 7999999999999999999999999999999999999999999875521 2344
Q ss_pred EEcCCcc---cccccHHhhccC-CCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV---LFSGTVRFNLDP-FSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~---lf~~tv~~nl~~-~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+..|+-. .++.+.-+++.+ +.+ ...+++...+.++|+..-....| ..+||+|||.||++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHhc
Confidence 5555542 334466666543 332 45677888888888765444333 35799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe-cChhHHh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEELL 1009 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~el~ 1009 (1171)
.|.+|||||||+|||.++...+.++|.+ +.++||+||||+..+.. +++|++.++|.+... |.+....
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999988 67899999999999998 999999999988765 7665543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=474.90 Aligned_cols=364 Identities=23% Similarity=0.368 Sum_probs=322.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 001055 12 MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV--TVVS 89 (1171)
Q Consensus 12 ~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 89 (1171)
.++-.++..+..-++..+....+++.++|+++|+.+....+|.+.....+....+.+-..+..+.+...+-+++ .++.
T Consensus 183 t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg 262 (580)
T COG4618 183 TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLG 262 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556778888889999999999999999999999999999999999999888777766666665555555544 3466
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEEeeE
Q 001055 90 FGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGY 169 (1171)
Q Consensus 90 ~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s 169 (1171)
.|.|++..|++|+|.+++...+......|+......|.++..++.|++|++++|...+....+ -+.+.+...+.+++++
T Consensus 263 ~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~ 341 (580)
T COG4618 263 LGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLT 341 (580)
T ss_pred cceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeee
Confidence 788999999999999999999999999999999999999999999999999999865432221 2223334469999999
Q ss_pred EEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCC
Q 001055 170 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSW 237 (1171)
Q Consensus 170 ~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~ 237 (1171)
+.-| +.++++++|+||++++||.++||||||||||||.|+|.|.++|.+|.+.. ..++|||+||+..
T Consensus 342 ~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 342 AAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred ecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 9766 45689999999999999999999999999999999999999999987632 3457999999999
Q ss_pred CCcccHHHHHh-cCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 238 IFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 238 l~~~Tv~eni~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
||++||.|||. |+.+.+++++.++.+.++.++.+-.+|+||+|.||++|.+|||||||||+||||||++|.+++||||-
T Consensus 421 LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPN 500 (580)
T COG4618 421 LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPN 500 (580)
T ss_pred ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCC
Confidence 99999999997 77678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 317 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+||.+.+..+.+.+...+.+|.|+|+|||+++.+..+|+|.+|++|++..-|+.+|++++
T Consensus 501 sNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 501 SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999988888889999999999999999999999999999999998887653
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=513.08 Aligned_cols=378 Identities=21% Similarity=0.312 Sum_probs=313.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VL 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 84 (1171)
++.+++++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..........+...+. ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (585)
T TIGR01192 175 LVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISM 254 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777778888899999999999999999999998888877665544443333322332222222222 12
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CC-CCCCCCCc
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-PLTSGLPA 162 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~-~~~~~~~~ 162 (1171)
+.++++|.+.+..|.++++.+++++.++..+..|+..+++.+..+..++.+++|+.++++.+++...+ .+ ..+.....
T Consensus 255 ~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (585)
T TIGR01192 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGA 334 (585)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCe
Confidence 34456788888999999999999999999999999999999999999999999999998764322111 11 11112235
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 335 i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 335 VEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 999999999974 346999999999999999999999999999999999999999986532 345699
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|+||+|++|++|++|||.++.+ .+++++.++++.+++.+.+..+|+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999854 467778889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+||||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|++++..
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence 9999999999999999999877554 4589999999999999999999999999999999999999888888887754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=539.50 Aligned_cols=482 Identities=18% Similarity=0.249 Sum_probs=347.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 001055 509 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 588 (1171)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~ 588 (1171)
+++.++..++.....|.....+.+....+...+|+|+++++...+++.++|+++|+++.|+..+...+.... .+....+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi 207 (1490)
T TIGR01271 129 CLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH-FVWIAPL 207 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHH
Confidence 334444555556666677777788888888889999999999999999999999999999999987655432 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHH
Q 001055 589 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 668 (1171)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 668 (1171)
.++..++++.....+..++.+.++++++++..+..+.....++..............|.++|+++||.|++|+.+.+.+.
T Consensus 208 ~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~ 287 (1490)
T TIGR01271 208 QVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIK 287 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 34433333333333332222223333344444444444555555555666778899999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001055 669 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLM-IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSL-LTAVLRLAS 746 (1171)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~~ 746 (1171)
+..+...+..........+..........+. +..++.+.+.. + ......|. .++++..+..+ +..+.....
T Consensus 288 ~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~-~-~~~~~~ft-----~lal~~lL~~~l~~~lp~~~~ 360 (1490)
T TIGR01271 288 NIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIK-G-IILRRIFT-----TISYCIVLRMTVTRQFPGAIQ 360 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CcHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 7766555443333222222211111111111 11111222221 1 11111111 12222222222 234556666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------------------------
Q 001055 747 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE--------------------------- 799 (1171)
Q Consensus 747 ~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~--------------------------- 799 (1171)
.+.....+++|+.+++..++..+.. .. .....++++|++|.|+..
T Consensus 361 ~~~~a~~s~~RI~~fL~~~e~~~~~--~~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1490)
T TIGR01271 361 TWYDSLGAITKIQDFLCKEEYKTLE--YN------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFS 432 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCccccccc--cc------CCCCceEEecceEecCCcccccccccccccccccccccccccccc
Confidence 6777889999999999765432110 00 012247888888887421
Q ss_pred -----CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc
Q 001055 800 -----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 874 (1171)
Q Consensus 800 -----~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 874 (1171)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|.+|
T Consensus 433 ~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~ 499 (1490)
T TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIM 499 (1490)
T ss_pred ccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccC
Confidence 13589999999999999999999999999999999999999999999997 499999999999
Q ss_pred cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCC
Q 001055 875 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 954 (1171)
Q Consensus 875 ~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~L 954 (1171)
++||+|||.+.....++...++++.+++.+.++.+|.|.+|.++++|.+|||||||||+||||++.+|+|+||||||++|
T Consensus 500 ~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 500 PGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred CccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999999866555556677888889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 955 DVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 955 D~~t~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
|+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.. ..|.+..
T Consensus 580 D~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 99999999974 66666789999999999999889999999999999999999998653 3444443
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=512.35 Aligned_cols=333 Identities=24% Similarity=0.348 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 001055 13 QKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSF 90 (1171)
Q Consensus 13 ~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 90 (1171)
++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+.....+....+...+..+ +.++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (529)
T TIGR02868 179 RAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWA 258 (529)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888999999999999999999999999999999877776666555555554443333333222 334567
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC---C-CCCCCCCcEEEE
Q 001055 91 GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN---P-PLTSGLPAISIR 166 (1171)
Q Consensus 91 g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~---~-~~~~~~~~i~~~ 166 (1171)
|.+.+..|.++++.+.+++.+...+..|+..+++.+..+..+..+++|+.++++.+++...+. + ...+....|+++
T Consensus 259 g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~ 338 (529)
T TIGR02868 259 GGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELR 338 (529)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEE
Confidence 888888999999999999999999999999999999999999999999999997654321111 1 011122359999
Q ss_pred eeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEEEecC
Q 001055 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQV 235 (1171)
Q Consensus 167 ~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~v~Q~ 235 (1171)
||+|+|++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|.+.. +++.|+||||+
T Consensus 339 ~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 339 DLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQD 416 (529)
T ss_pred EEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccC
Confidence 99999974 346999999999999999999999999999999999999999987643 23579999999
Q ss_pred CCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeC
Q 001055 236 SWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314 (1171)
Q Consensus 236 ~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 314 (1171)
|++|++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++|||||+++|+||||||
T Consensus 417 ~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 417 AHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred cccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999864 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCc
Q 001055 315 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348 (1171)
Q Consensus 315 pts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~ 348 (1171)
|||+||+++++.+.+.+.+. .+++|+|+|||++
T Consensus 497 ~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred CcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 99999999999999987653 4689999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=503.35 Aligned_cols=351 Identities=25% Similarity=0.365 Sum_probs=288.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--V 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~--~ 85 (1171)
+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+..++.+..++..+...+..........+...+..+ +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02857 164 IGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVA 243 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888889999999999999999999999999998888765555444333332222222222222211 1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEE
Q 001055 86 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 165 (1171)
Q Consensus 86 ~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 165 (1171)
.++.++.+.+..|.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.+++.....+........|++
T Consensus 244 ~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~ 323 (529)
T TIGR02857 244 LVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEF 323 (529)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEE
Confidence 11234445556889999999999999999999999999999999999999999999997543211111111111236999
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEe
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 233 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 233 (1171)
+|++|+|++. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +++.|+|||
T Consensus 324 ~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 324 SGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 9999999743 358999999999999999999999999999999999999999886532 345699999
Q ss_pred cCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 234 QVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 234 Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
|+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999854 567889999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l 360 (1171)
|||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRAL-AQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999877654 3689999999999999999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=522.79 Aligned_cols=530 Identities=17% Similarity=0.214 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhccccccCCCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 469 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF----YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
.+++.++..++....|..+....+..... ..... +...++++.++..++.....+.....+.+....+...+|+|
T Consensus 249 ~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K 327 (1560)
T PTZ00243 249 QIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEK 327 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556665555444321111 11111 22223333444555556666777788888888899999999
Q ss_pred HHcCCccccc--cCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 545 ll~~p~~~f~--~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
+++++...+. +.+.|+++|.++.|++.+...+... ..+....+.++.+++++.....+..++.+.++++++++..+.
T Consensus 328 ~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~ 406 (1560)
T PTZ00243 328 CFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAI 406 (1560)
T ss_pred HHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776 5689999999999999998876443 334444444444444433333333333333334444444455
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW- 701 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 701 (1171)
.+.....++..........+...|.++|+++||.+++|+.+.+.+.+..+...+..........+..+.......++..
T Consensus 407 ~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~ 486 (1560)
T PTZ00243 407 MKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAV 486 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544455555555666677889999999999999999999998888776655554333333333333322222222221
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc------cc---
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPL------VI--- 772 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~------~~--- 772 (1171)
.++.+.+. ++..+....| ..++++..+..++..+......+.....++.|+.++++.++..+. ..
T Consensus 487 ~f~~y~~~-g~~Lt~~~vf-----t~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 560 (1560)
T PTZ00243 487 VFTVYYLL-GHELTPEVVF-----PTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWRE 560 (1560)
T ss_pred HHHHHHHh-CCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccc
Confidence 11222232 3333332222 223333344445555666667777889999999999976541100 00
Q ss_pred -----C--C-----CC-------C---------------------------CCCCCCCccEEEEeeEEEeC---------
Q 001055 773 -----E--S-----NR-------P---------------------------PPGWPSSGSIKFEDVVLRYR--------- 797 (1171)
Q Consensus 773 -----~--~-----~~-------~---------------------------~~~~~~~g~i~~~~vs~~y~--------- 797 (1171)
. . .. + +..+...+.+.++|++++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1560)
T PTZ00243 561 QREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVE 640 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 0 00000113466777766531
Q ss_pred -----------------------------CCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 798 -----------------------------PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 798 -----------------------------~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
.+.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 641 GGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 112358999999999999999999999999999999999999999999863
Q ss_pred CEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 849 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 849 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
++|+|+||+|.+|++||+||+.++.+...+.+.++++.+++.+.++.+|.|+++.+++.+.+|||||
T Consensus 721 -------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQ 787 (1560)
T PTZ00243 721 -------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQ 787 (1560)
T ss_pred -------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHH
Confidence 4699999999999999999998765555566788889899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHH-HHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~e 1007 (1171)
||||+|||||+.+|+||||||||++||+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|++++
T Consensus 788 kqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 788 KARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999988877654 444446899999999999998899999999999999999999
Q ss_pred HhhcCCChHHHHHH
Q 001055 1008 LLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 1008 l~~~~~~~~~~~~~ 1021 (1171)
+++. +.|..+..
T Consensus 868 l~~~--~~~~~~~~ 879 (1560)
T PTZ00243 868 FMRT--SLYATLAA 879 (1560)
T ss_pred HHhC--hHHHHHHH
Confidence 9864 34555543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=454.79 Aligned_cols=353 Identities=24% Similarity=0.404 Sum_probs=292.0
Q ss_pred HHHHhhHHHHHHhCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001055 31 NEILAAMDAVKCYAWENSFQSKVQN----VRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAF 106 (1171)
Q Consensus 31 ~e~l~~i~~IK~~~~e~~~~~~~~~----~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~f 106 (1171)
.+.+-+.++||.|+.|+...+++.. +++.|-+..-...++......+... .++....+.+|.+..+.+|+|...
T Consensus 402 vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gll~gsll~aY~Vt~q~ltVGDfV 479 (790)
T KOG0056|consen 402 VDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GLLAGSLLCAYRVTEQTLTVGDFV 479 (790)
T ss_pred hhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHhhhhheeeeeeeecccccccee
Confidence 3677889999999999876655443 3333333322222222222222111 111222345677778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cCCC-CCCCCCCCcEEEEeeEEEcCCCCCCCceeee
Q 001055 107 TSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LLPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNI 184 (1171)
Q Consensus 107 ~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~~~-~~~~~~~~~i~~~~~s~~~~~~~~~~~l~~i 184 (1171)
.+..++.++.+|++.+...+..++.+.+-++|+.|+++++++. +.|+ ++.......|+++|++|.|+. ++++|+||
T Consensus 480 lf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~di 557 (790)
T KOG0056|consen 480 LFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDI 557 (790)
T ss_pred hHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecc
Confidence 9999999999999999999999999999999999999877643 2222 233333346999999999974 68999999
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCCcccHHHHHhcCCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA 252 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~ 252 (1171)
||++++|+.+++|||||+||||++++|.++++..+|.+.. +|+.||.||||..||++||..||.++++
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~ 637 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP 637 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC
Confidence 9999999999999999999999999999999998886532 5677999999999999999999999976
Q ss_pred C-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 001055 253 F-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331 (1171)
Q Consensus 253 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l 331 (1171)
. ..+++.++.++++.++.+-.+|+|+.|.+||+|-.||||+|||||+||+++++|.+++|||+||+||..+++.|-..+
T Consensus 638 ~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 638 SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 3 567888899999999999999999999999999999999999999999999999999999999999999999997755
Q ss_pred HhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-chHHHHHHHHh
Q 001055 332 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENA 388 (1171)
Q Consensus 332 ~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 388 (1171)
.+ ...++|.|+|.|+++.+-++|.|+++++|+|++.|+++|+..+ ++.|..|+..+
T Consensus 718 ~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 718 AR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred HH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 44 3468999999999999999999999999999999999999877 88999998643
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=454.36 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=167.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..+++.+|+|.|.++..+.+.++++.+..-+++++||+||+||||+++++.+...|..|.+-+. -|.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PRLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------cccee
Confidence 3599999999998775579999999999999999999999999999999999999999998876 36789
Q ss_pred EEEcCCcccc-cccHHh--hc-cCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLF-SGTVRF--NL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf-~~tv~~--nl-~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|..|.-.-+ +..+.. -+ ..++..+++++++.+...|+..-+... ...+||||||-||++|.....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcC
Confidence 9999986533 223221 11 123344788999988887766544332 235799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe-cChhH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEE 1007 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~e 1007 (1171)
+|++|+||||||+||.++...+-++|+. .++.||+||||.+++.. |+.+|+.++|+|... |+..+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKN--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHh--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHH
Confidence 9999999999999999999999999988 56779999999999998 999999999999875 55433
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=402.92 Aligned_cols=218 Identities=28% Similarity=0.481 Sum_probs=188.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC-CChHHHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-FGLMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~r~~i~ 865 (1171)
|+++||+++|+.. .+|+|||++|.+||+++|+|||||||||||+||.|+-+|++|+|.++|.++.. .+...+|+++|
T Consensus 3 i~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred EEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 8999999999864 79999999999999999999999999999999999999999999999987743 36778999999
Q ss_pred EEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+|+..||+. ||.+|+.... ..+.++..+ .+.+++++ .|+....+..+.+||||||||+||||||..
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~-----~A~~lL~~--VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE-----KALELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHH-----HHHHHHHH--cCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 99999999976 9999997432 223322211 12233443 355555566667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
+|+++|+|||||+|||+...++.+.++++.+ |.|+|+|||+|.++.. ||||+.|++|+|+++|+|+++..++.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 9999999999999999999999999999875 7899999999999998 99999999999999999999997754
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=433.65 Aligned_cols=240 Identities=35% Similarity=0.687 Sum_probs=223.5
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
|.|+++||+++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3589999999996544579999999999999999999999999999999999998 789999999999999989999999
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||||++.+|++|+++|++++...++++++++++.+++.+++.++|.++++.+++.+.+||||||||++|||||+++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987666678889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
|||||||++||+.+.+.+++.|++...++|||+||||++++..||||++|++|++++.|+|++++++ .+.|.+++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999988778999999999999988999999999999999999999985 467777777655
Q ss_pred hh
Q 001055 1025 AA 1026 (1171)
Q Consensus 1025 ~~ 1026 (1171)
..
T Consensus 239 ~~ 240 (275)
T cd03289 239 RL 240 (275)
T ss_pred hH
Confidence 43
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-46 Score=459.49 Aligned_cols=351 Identities=15% Similarity=0.177 Sum_probs=268.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN--SFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~--~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1171)
+.++.++..++..+..++..+.+.|.+.|+++||.|+.++ ....++.+..++..+...+..........+...+..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (555)
T TIGR01194 172 AFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLL 251 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777788888999999999999999999854 33444443333322222222211211111111111111
Q ss_pred H--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cC---CCC-----
Q 001055 86 T--VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LL---PNP----- 154 (1171)
Q Consensus 86 ~--~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~---~~~----- 154 (1171)
. +++++. ..|.++.+.+++++.+...+..|+..+.+.+..+..+..+++||.++++.+++. .. +..
T Consensus 252 ~~~~~~~~~---~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 328 (555)
T TIGR01194 252 IGCALFAAA---MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLL 328 (555)
T ss_pred HHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 1 111222 126899999999999999999999999999999999999999999998632111 00 100
Q ss_pred -CCCCCCCcEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------
Q 001055 155 -PLTSGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------- 224 (1171)
Q Consensus 155 -~~~~~~~~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------- 224 (1171)
+.......|+++|++|+|+++. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred cccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 0001123599999999997532 246999999999999999999999999999999999999999986532
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.+..++|++|++++|++|+++|+. ...+++++.++++.+++.++++.+|+|++|. .+||||||||++|
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 345699999999999999999962 3345677888999999999999999999884 6899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh-hccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 368 (1171)
||||+++|+++||||||++||+++++.+.+.+.+ ....++|+|+|||+++.+..||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999886654 33468999999999999999999999999998864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-47 Score=417.40 Aligned_cols=367 Identities=26% Similarity=0.399 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 001055 17 KEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PVLVTVVSFGMFT 94 (1171)
Q Consensus 17 ~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~ 94 (1171)
++..++.........+.|-+-+++|.|+-|+.+..++....+..-+...+...-..+..+....+ ..+....+.+...
T Consensus 112 r~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~ 191 (497)
T COG5265 112 RLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALG 191 (497)
T ss_pred HhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHH
Confidence 33333444445566689999999999999999988876655544444333222111111111111 1112223344555
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-CCC-CCCC-CCCCcEEEEeeEEE
Q 001055 95 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLT-SGLPAISIRNGYFS 171 (1171)
Q Consensus 95 ~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~~~-~~~~-~~~~~i~~~~~s~~ 171 (1171)
+..|.+|.+.+...-.++.++..|++.+...+..+.+++..++++.+.+..+.+.. .|+ ++.. .....+.+.|++|.
T Consensus 192 v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~ 271 (497)
T COG5265 192 VEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFA 271 (497)
T ss_pred HhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEee
Confidence 67899999999999999999999999999999999999999999999887654321 122 2222 22335899999999
Q ss_pred cCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCC
Q 001055 172 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIF 239 (1171)
Q Consensus 172 ~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~ 239 (1171)
|.. .+++|+++||++++|+.+++||++|+||||++++|.+++++.+|.+.. +|+.||.|||+..||
T Consensus 272 y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF 349 (497)
T COG5265 272 YDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF 349 (497)
T ss_pred ccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh
Confidence 974 689999999999999999999999999999999999999999987643 345699999999999
Q ss_pred cccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001055 240 NATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318 (1171)
Q Consensus 240 ~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~ 318 (1171)
++|+..||.+|++ ...+++.++.+.++++.++..+|+|++|.|||+|-.||||+|||||+||+++++|+||+|||+||+
T Consensus 350 NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 9999999999976 456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 319 LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
||.++++.|...+.+ ..+|+|.++|.|+++.+-.+|.|++|++|+|++.|++++++..++.|++|+.
T Consensus 430 ldt~te~~iq~~l~~-~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 430 LDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred hhhhHHHHHHHHHHH-HhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 999999999877654 4478999999999999999999999999999999999999999999998874
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=395.01 Aligned_cols=223 Identities=30% Similarity=0.530 Sum_probs=193.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+|+|||++|++. .+++|+||+|++||.+.++|||||||||++++|.|+++|++|+|+++|.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 7999999999854 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~--~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|-|...||+. ||.+|+..... .+.+++.+ .+.+.+.. .|++ ....+.+.+|||||+|||.+||||..
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~l--vgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa 152 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDL--VGLDPSEYADRYPHELSGGQQQRVGVARALAA 152 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHH--hCCCHHHHhhcCchhcCcchhhHHHHHHHHhc
Confidence 9999999966 99999975432 23333321 12233332 2333 24455567899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+|+|||+|||+++|||-++..+++.+.++.+ ++|+|+||||++++.. +|||.+|++|+|+.+++|+++++++...|-
T Consensus 153 dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV 232 (309)
T COG1125 153 DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFV 232 (309)
T ss_pred CCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHH
Confidence 9999999999999999999999999988764 7999999999999877 999999999999999999999998876654
Q ss_pred H
Q 001055 1018 K 1018 (1171)
Q Consensus 1018 ~ 1018 (1171)
+
T Consensus 233 ~ 233 (309)
T COG1125 233 E 233 (309)
T ss_pred H
Confidence 3
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=404.23 Aligned_cols=219 Identities=31% Similarity=0.478 Sum_probs=189.1
Q ss_pred EEEEeeEEEeCCC---CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 787 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~---~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
|++++|++.|... ..++|+||||+|++||++||+|+||||||||++++.++-+|++|+|.+||.|+..++... +
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 246999999999999999999999999999999999999999999999999988777554 5
Q ss_pred hhheEEEcCCccccc-ccHHhhccCC---CCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 861 RKILGIIPQSPVLFS-GTVRFNLDPF---SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~-~tv~~nl~~~---~~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
|++||+++|++.|++ .||.+|+.+- ...++++ +.+.|+.+ |+....+..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 788999999999986 5999999742 1223333 33444444 444555555679999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+|||||+.+|+|||+|||||+|||+|.+.|.+.|++..+ |-||++|||.|+.+++ ||||.||++|+|+|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998764 7899999999999999 9999999999999999999999
Q ss_pred hcCCChH
Q 001055 1010 SNEGSSF 1016 (1171)
Q Consensus 1010 ~~~~~~~ 1016 (1171)
.++....
T Consensus 231 ~~Pk~~~ 237 (339)
T COG1135 231 ANPKHAI 237 (339)
T ss_pred cCcchHH
Confidence 8765433
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=380.87 Aligned_cols=203 Identities=32% Similarity=0.497 Sum_probs=180.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.|+++|++++|+. ..+|+|||++|++||+++|+|||||||||||+||.|+.+|++|.+.. +|.+
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999973 57999999999999999999999999999999999999999886532 3456
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
+|+|+|+..|| ..||.|||.++. .... ++..+.++..+|.+..+..|. +|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 99999999998 689999999873 1122 334456788899888888884 899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||||+.+|+++|+|||||+|||+.+..+.+.+......|.|.|+|||++.|... +|||+.|++|+++++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999888888899999999999999987 5999999999999999999987664
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=439.42 Aligned_cols=347 Identities=21% Similarity=0.303 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWE---NSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP 82 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (1171)
.++.+++++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..........+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (547)
T PRK10522 165 FVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMM 243 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345566777788888899999999999999999997 3333 344455544333322222222222222111111111
Q ss_pred HHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC
Q 001055 83 VLVTVVSFGMFTLLGG---DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSG 159 (1171)
Q Consensus 83 ~~~~~~~~g~~~~~~~---~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 159 (1171)
++.++++.+.++ ..+.+.+.++..+...+..|+..+...+..+..+..+++||.+++..+++...+.+...+.
T Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~ 319 (547)
T PRK10522 244 ----LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPD 319 (547)
T ss_pred ----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCc
Confidence 111222222221 1222222222222333567999999999999999999999999975443211111111111
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecC
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 227 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~ 227 (1171)
...|+++|++|+|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +++
T Consensus 320 ~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 320 WQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred CceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 236999999999973 357999999999999999999999999999999999999999986532 345
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
.|+|++|++.+|++|+++| +...+++++.++++.+++...... +++. .+|.+||||||||++|||||+++|
T Consensus 398 ~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred heEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999 334556667777777777665542 2221 136799999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 368 (1171)
+++|||||||+||+++++.+.+.+.+.. ..++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999988776443 247999999999999999999999999999875
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=440.37 Aligned_cols=350 Identities=18% Similarity=0.199 Sum_probs=277.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--- 82 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--- 82 (1171)
.++.+++.+..++.++..++-.+...|.++|+++||.|+.|+.+..++.+..++..+..++.....+....+...+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556677888888999999999999999999999999999999999988777777666665555544443333322
Q ss_pred -HHHHHHHHHHHHHh-c----CCCCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-
Q 001055 83 -VLVTVVSFGMFTLL-G----GDLTPARAFT-SL---SLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL- 151 (1171)
Q Consensus 83 -~~~~~~~~g~~~~~-~----~~l~~~~~f~-~l---~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~- 151 (1171)
..+.++..|...+. . |.+|.+..+. ++ .++..+..|+..+.+.+..+.++..+.+||.++++.+++...
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~ 416 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSG 416 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222233332232 2 6788887555 22 335667889999999999999999999999999976432110
Q ss_pred -------CC-C----------------CCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHH
Q 001055 152 -------PN-P----------------PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 207 (1171)
Q Consensus 152 -------~~-~----------------~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTL 207 (1171)
+. . ........|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 417 NFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred cccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 00 0 00012235999999999973 3579999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcccee-cCcEEEEecCCCCCcccHHHHHhcCC--------CCCHHHHHHHHHHcCchHHHhcCCCCC
Q 001055 208 ISAMLGELPPVSDASAVI-RGTVAYVPQVSWIFNATVRDNILFGS--------AFEPARYEKAIDVTSLQHDLDLLPGGD 278 (1171)
Q Consensus 208 l~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~~~Tv~eni~~g~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (1171)
+++|+|+++|++|.+... +..++||||+|.++++||+|||.++. ...++++.++++.+++.+.++. +.|+
T Consensus 495 l~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 573 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGW 573 (659)
T ss_pred HHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCc
Confidence 999999999988765432 45699999999999889999999863 1345677888999999988877 7788
Q ss_pred ccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 279 ~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
+|..+ .+.+||||||||++|||||+++|+++||||||++||+++++++.+.+.+ .|+|+|+|||+++.+..||+++
T Consensus 574 ~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il 649 (659)
T TIGR00954 574 SAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLL 649 (659)
T ss_pred ccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEE
Confidence 88765 5679999999999999999999999999999999999999999887644 3799999999999999999999
Q ss_pred EEeC
Q 001055 359 LVHE 362 (1171)
Q Consensus 359 ~l~~ 362 (1171)
+|+.
T Consensus 650 ~l~~ 653 (659)
T TIGR00954 650 YMDG 653 (659)
T ss_pred EEeC
Confidence 9973
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-45 Score=414.79 Aligned_cols=227 Identities=23% Similarity=0.359 Sum_probs=197.7
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK 854 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~ 854 (1171)
.|+..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 477788899999999997544579999999999999999999999999999999999996 579999999999973
Q ss_pred --CChHHHhhheEEEcCCcccccccHHhhccCCC---CCCHHHH-----HHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 855 --FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 855 --~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i-----~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
.+...+|+.++||||+|.+|++|+++|+.+.. ..++.+. .++++.+++ +.++++.+++.+.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence 34567889999999999999999999998432 2333333 333444443 335567788999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||||||||+|||||+++|+||||||||++||+.+...+++.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999988 9999999999999999
Q ss_pred ChhHHhhcCC
Q 001055 1004 TPEELLSNEG 1013 (1171)
Q Consensus 1004 ~~~el~~~~~ 1013 (1171)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=392.61 Aligned_cols=212 Identities=34% Similarity=0.545 Sum_probs=187.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++|+|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.++++|
T Consensus 3 L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 8999999999854 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcc-cccccHHhhccC--------CCCCC--H-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 867 IPQSPV-LFSGTVRFNLDP--------FSEHS--D-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 867 v~Q~~~-lf~~tv~~nl~~--------~~~~~--~-~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
|||.+. -|..||+|-+.+ +...+ | +.+.++++..++.++.++ ...+||||||||+.|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~i 149 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVLI 149 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHHH
Confidence 999974 456699885532 22222 2 246777888777666544 346899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||+++|+||+|||||++||....-.+++.++++.+ +.|+|+|.||++.+.+ ||++++|++|++++.|+|+|.+..
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 9999999999999999999999999999999999873 6999999999999877 999999999999999999998853
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=370.31 Aligned_cols=219 Identities=26% Similarity=0.449 Sum_probs=197.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-----ceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~-----G~I~i~g~~i~~--~~~~ 858 (1171)
.++++|+++.|+.. .+|+|||+.|++++++|++|||||||||||+++.++.+..+ |+|.++|++|-+ .+.-
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 48999999999854 69999999999999999999999999999999999998875 999999999976 4688
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
.+|++||+|+|.|.-|..||.||+.+... .-++.++++|+.+.+++.+.. .+++.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 89999999999999999999999976432 124557888999999887643 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||||.-+|+|||||||||+|||.+...|++.|.++.++-||++|||.|.-+.+ +|++..+..|+++|+|+.+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999888999999999999888 99999999999999999999987
Q ss_pred cCC
Q 001055 1011 NEG 1013 (1171)
Q Consensus 1011 ~~~ 1013 (1171)
++.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 653
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=374.93 Aligned_cols=215 Identities=30% Similarity=0.519 Sum_probs=187.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~ 862 (1171)
.|++++|+++|+++ .+++||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++..+ +|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999765 7999999999999999999999999999999999999999999999999999888654 688
Q ss_pred heEEEcCCcccccc-cHHhhccCC----CCCCHHHHHH----HHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWE----ALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLL 932 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~i~~----~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl 932 (1171)
++|+++|+..||+. ||.||+.+. ....+..+.+ .++.+ |+... ....+..||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V-----------GL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV-----------GLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc-----------CCChhhhhhCchhhcchHHHHH
Confidence 99999999999976 999999752 2233443332 23344 44443 3445578999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+||||+.-+|+||++||||+||||.+...+.+.|+++.+ +.|+++||||++++.. ||||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998765 7899999999999988 9999999999999999999999
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+..+
T Consensus 235 ~sd~ 238 (263)
T COG1127 235 ASDD 238 (263)
T ss_pred hCCC
Confidence 7644
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=393.05 Aligned_cols=231 Identities=37% Similarity=0.603 Sum_probs=208.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|+...+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996433469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|+.|+.+|+.+... .....+.+.++..++.++++.+|.++++..+..+.+|||||||||+|||||+.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3345566777778889999999999999888899999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++++++... +.|..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAY 232 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc-ChHHH
Confidence 9999999999999999999999987789999999999999779999999999999999999998653 34443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=387.53 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=154.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+-+.||+|.|++. .|.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+.+-+ .|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 47899999999765 479999999999999999999999999999999999999999987654 455799
Q ss_pred EEcCCcc--cc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPV--LF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~--lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~-~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+.-|... |- ..|..|.|.-.-...-++.+..|...|+. ++.. -....||||||-||+||-.-++.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~-----------sHAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLA-----------SHAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhh-----------hccceEeeeecCCcchHHHHHHHHhcCC
Confidence 9888763 22 23666655311122234455555554443 3221 13457999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcC-EEEEEeCcEEEEe-cChhHHh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEELL 1009 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d-~i~vl~~G~i~~~-g~~~el~ 1009 (1171)
|+||||||||++||.++...+-++|.+ ..+.||+||||-..+...| ..||+++..|-+. |..+++.
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 999999999999999999999999998 4678999999999987733 4666776556554 6655543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=395.89 Aligned_cols=236 Identities=50% Similarity=0.825 Sum_probs=214.8
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
.+.|+++|++++|+....++++|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 46799999999997533469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+|+||++.+|.+|+++|+.+........+.++++..++.++++.+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643334556778888889999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|..+
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 9999999999999999999999998777899999999999998899999999999999999999987655445443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=434.05 Aligned_cols=199 Identities=28% Similarity=0.386 Sum_probs=164.1
Q ss_pred CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHHhhheEEEcCCccccc-
Q 001055 799 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS- 875 (1171)
Q Consensus 799 ~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 875 (1171)
+.+.+|+||+=-++||-.+||+|+||||||||+++|+|-..- .+|+|+++|.+..+ +..++.+|||.|++.-..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 445799999999999999999999999999999999987532 47999999998754 678999999999986544
Q ss_pred ccHHhhccCCC------CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC-CE
Q 001055 876 GTVRFNLDPFS------EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS-KI 944 (1171)
Q Consensus 876 ~tv~~nl~~~~------~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p-~i 944 (1171)
-||||-|.+.+ +.++++ ++++++..++.++- |..++..|..||..||+||.||--|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 49999886421 222222 44455554444332 35577788899999999999999999999 88
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh--hhhcCEEEEEe-CcEEEEecChhH
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILLLD-SGRVLEYDTPEE 1007 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~--~~~~d~i~vl~-~G~i~~~g~~~e 1007 (1171)
|+|||||||||..+...|.+.++++. .|+||+++-|.++. .+..|+++.|+ .|+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999977 48999999999876 46699999998 799999987644
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=385.88 Aligned_cols=219 Identities=68% Similarity=1.064 Sum_probs=204.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 48999999999754346999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
|+||++.++..|+++|+.++.....+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+.+|++|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999999876555667788889999999999999999999998899999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999877799999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=380.80 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=181.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++|++++|+.. ++|+||||+|++|+++||+||||||||||+|+|+|+++|.+|+|.+.|.++++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999865 59999999999999999999999999999999999999999999999988765332 46899
Q ss_pred EEcCCc---ccccccHHhhccCCC-----------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 866 IIPQSP---VLFSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 866 ~v~Q~~---~lf~~tv~~nl~~~~-----------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
||||.. .-|+.||+|-+.... ....+.+.++|+++++.++..+ ...+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 999966 346779999765321 1123678888888877765543 456899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++.+ |+|||+||||++.+.. ||+|+.|++ ++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999875 8999999999999887 999999955 899999999987
Q ss_pred hc
Q 001055 1010 SN 1011 (1171)
Q Consensus 1010 ~~ 1011 (1171)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 53
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=383.90 Aligned_cols=225 Identities=43% Similarity=0.700 Sum_probs=206.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 48999999999642 36999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+++|+.++.. ....++.++++..++.++++++|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999986543 345667778888899999999999999999888999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|+++++.+.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999998678999999999999878999999999999999998888754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=384.90 Aligned_cols=226 Identities=38% Similarity=0.644 Sum_probs=205.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543369999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|..|+++|+.++.. ....++.+.++..++.++++.+|.++++..+....+||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998999999986533 3445666777778899999999999998888889999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcC
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999999999987789999999999999889999999999999999999987653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=395.47 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=193.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||++.|++. .+|+|+||+|+.||.++|+|||||||||||++|+|+.+|++|+|.|||.++++++|.+ +.|+
T Consensus 3 ~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 48999999999753 2999999999999999999999999999999999999999999999999999998865 7899
Q ss_pred EEcCCcccccc-cHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+|||+..||+. ||++|+.+.-.. .+.++.++++..++.+++++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 999999864221 2455677777777666666655 6799999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+++|+++|||||.|+||+..+..+...|+++.+ +.|+|.||||-.++.. +|||+||++|+|.+.|+|.|+..++.+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999988654 6899999999999877 999999999999999999999987765
Q ss_pred hHH
Q 001055 1015 SFS 1017 (1171)
Q Consensus 1015 ~~~ 1017 (1171)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 554
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=366.73 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=185.2
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhh
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~ 862 (1171)
.++++|+++.|+.+. .++|+||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++....+ ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 389999999997642 149999999999999999999999999999999999999999999999987765433 34677
Q ss_pred heEEEcCCcc--ccc-ccHHhhcc-CCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 863 ILGIIPQSPV--LFS-GTVRFNLD-PFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 863 ~i~~v~Q~~~--lf~-~tv~~nl~-~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
.|.+|||||. +-+ .||++-|. +... ....++.++++.+++.+ ....+.+.+|||||+||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 8999999995 222 27776653 2211 12345777777776643 22334456799999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||.-+|++||||||||+||+-..+.|++.|.++.+ +-|.|+||||+..+.. ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999999875 4599999999999998 999999999999999999999877
Q ss_pred CCChHHH
Q 001055 1012 EGSSFSK 1018 (1171)
Q Consensus 1012 ~~~~~~~ 1018 (1171)
....|.+
T Consensus 233 ~~h~ytr 239 (252)
T COG1124 233 PSHPYTR 239 (252)
T ss_pred CccHHHH
Confidence 5545554
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=402.89 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=186.6
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
++|||+||++.+|. .|+++|+.+.. ..... ++.+.++.+ |+....+..+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v-----------gL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 78999999999985 59999996421 12222 233334443 4444455566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++||||||||+||+.+...+++.|+++.+ +.|||+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999764 7899999999999977 99999999999999999999987
Q ss_pred cCCChH
Q 001055 1011 NEGSSF 1016 (1171)
Q Consensus 1011 ~~~~~~ 1016 (1171)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654433
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=396.09 Aligned_cols=217 Identities=28% Similarity=0.436 Sum_probs=192.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++ ..+++|+||+|++||.++|+|||||||||||++|+|+..|++|+|.++|+++..++++ ++.||
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 4999999999984 3799999999999999999999999999999999999999999999999999998874 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC----CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~----~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+|+|+..||+. ||++|+.|.-. ..+ +.+.++++.+++.++-.+.| .+|||||+|||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999986432 222 35677777777766655544 689999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
||..+|++||||||.|+||..-+..++.-|+++.+ |.|.|+||||-+++.. +|||.||++|+|...|+|+|+...+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999999999888653 7899999999999766 99999999999999999999998776
Q ss_pred ChHH
Q 001055 1014 SSFS 1017 (1171)
Q Consensus 1014 ~~~~ 1017 (1171)
..|-
T Consensus 230 ~~fV 233 (352)
T COG3842 230 TRFV 233 (352)
T ss_pred hHHH
Confidence 5554
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=351.37 Aligned_cols=206 Identities=28% Similarity=0.433 Sum_probs=184.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 863 (1171)
|+|+||+++|+.+ +++|+||||+|++||.+-|+||||||||||+|+|++..+|+.|+|.++|.|++++...+ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999877 67999999999999999999999999999999999999999999999999998887665 7999
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---C----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---E----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
||+|+||.-|.. .||.||+.+-- . ....++.++|+.+|+.+-...+| .+||||||||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 999999998775 49999997421 1 12456778888888888777777 57999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
||++.+|++||-||||-+|||++...|++.+.+... |.||++.|||.+.+.. --|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999764 8999999999999988 68999999999987644
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=378.19 Aligned_cols=214 Identities=29% Similarity=0.503 Sum_probs=190.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC-CCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~r~~i 864 (1171)
.++++|++|+|++. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 38999999999876 57999999999999999999999999999999999999999999999999988 47788899999
Q ss_pred EEEcCCc--ccccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 865 GIIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 865 ~~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
|||+|+| .+|..||.+.+.+... ... .++.++++.+++.++.++ ...+|||||||||+||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhh
Confidence 9999999 6889999999886542 233 335566666666655444 4468999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|+.+|++|||||||++||+...+.+.+.++++.. ++|+|++|||++.+.. |||+++|++|+++.+|+|.++.++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999875 4799999999999988 999999999999999999998865
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=360.44 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=183.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 862 (1171)
.|+++||++.|+++ ..+|+||||+|++||.|+|+||||||||||+++|.|+.+|++|+|.++|.++...+ .+.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999754 47999999999999999999999999999999999999999999999999998887 445678
Q ss_pred heEEEcCCcccccc-cHHhhccCC------------CCCCHHH---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPF------------SEHSDAD---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~------------~~~~~~~---i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg 926 (1171)
+||+++|++.|-+. ||.+|+..+ .-.+.++ ..++|++.+ +......+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervg-----------i~~~A~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVG-----------ILDKAYQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcC-----------cHHHHHHHhccCCc
Confidence 89999999998865 999998421 2233333 344444444 44444556678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||+|||+|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+.+ ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999876 47999999999999988 9999999999999999
Q ss_pred ChhHHh
Q 001055 1004 TPEELL 1009 (1171)
Q Consensus 1004 ~~~el~ 1009 (1171)
++.|+-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=369.25 Aligned_cols=197 Identities=27% Similarity=0.372 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+++++|++.|+. ..+|+|+||+|++||.|+|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 3899999999986 3799999999999999999999999999999999999999999999999988443 35799
Q ss_pred EEcCCcccccc-cHHhhccCCCCC---C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~---~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
||+|++.||.- ||++|+.+.-+. . .+.+.+.++.+|+. ...+..+.+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-----------~~~~~~P~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-----------GFEDKYPHQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-----------chhhcCccccChHHHHHHHHHHH
Confidence 99999999987 999999754321 1 22344445554444 44455557899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeC--cEEE
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS--GRVL 1000 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~ 1000 (1171)
|+.+|+|||||||.++||+.|+..+++.|.++.+ ++||++||||.+++-. +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999988653 5999999999999877 999999998 5554
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=378.88 Aligned_cols=224 Identities=43% Similarity=0.717 Sum_probs=205.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 369999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|+.|+++|+.+.. ...+.++.+.++..++.+.+..+|.++++.+.....+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23455677778888899999999999999999889999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||||++||+.+...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999987668899999999999988999999999999999999888764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=353.76 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=188.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+++.+++++|++. ..+++||||+++.||++||+|||||||||+|++|.+++.|++|.|.+||.|..+ .|...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 7889999999863 358999999999999999999999999999999999999999999999999977 56789999999
Q ss_pred EcCCcccccc-cHHhhccCCCCC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++-+..++.. |++|||.+|+.. .+.++. +...+...+ .++....+.+...||-|+||||+|||||+++|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~--l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKR--LQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHH--hChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 9988778754 999999876532 223222 223333333 35566666677789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
++++|||||||||..+.+.+++.+++... +++||+.||.|++++. ||||+++++|+++..|+++++.++.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999875 8999999999999997 9999999999999999999997643
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=375.47 Aligned_cols=218 Identities=37% Similarity=0.596 Sum_probs=197.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|+....++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999653246999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+.+|+.+... ....++.+.++..++.+.+..+|.|+++.......+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999975432 244567778888899999999999999988888889999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|||||||++||+.+...+++.|+++..++|||++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999986668999999999988669999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=379.22 Aligned_cols=225 Identities=41% Similarity=0.660 Sum_probs=203.0
Q ss_pred EEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 787 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
++++|++++|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+++|+.+... ....++.+.++..++.+++..+|.++++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999976432 234556667777788999999999999988888899999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+.+.+++.|+++.+++|+|++||+++++..||++++|++|++++.|+++++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987667899999999999988999999999999999999888754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-44 Score=355.98 Aligned_cols=223 Identities=28% Similarity=0.453 Sum_probs=192.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.+.++|+.++|+.. +++++|||+|++||+||++|||||||||.+.++.|+.+|++|+|.+||.||+.++.+.. |..|
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 48899999999764 79999999999999999999999999999999999999999999999999999998764 5569
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
||+||++.+|.. ||++||...-+..........++..+.+.++. +.+....+..+.+||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~e--f~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEE--FHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH--hchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999976 99999964322222122223333445555555 366677788889999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh-hhcCEEEEEeCcEEEEecChhHHhhcC
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~-~~~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
++|||||++|+||-+...|++.++.+. .|-.|+++-|+..+. .-|||.+++.+|+|..+|+|+|+.+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999998876 478899999997664 559999999999999999999999765
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=363.89 Aligned_cols=204 Identities=30% Similarity=0.427 Sum_probs=171.7
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H-
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~- 860 (1171)
++++||++.|.... .++|+++||+|++||.++|+||||||||||+++|.|+.+|++|.|.++|.|+..++... +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 36899999999999999999999999999999999999999999999999999887544 3
Q ss_pred hhheEEEcCCcccccc-cHHhhccC---CCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQL 931 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~---~~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~-~~~~~LSgGqkqr 931 (1171)
|++||||+|+..|.+. |++||+.. +..... ....+.++.. |+..... ..+.+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 4569999999998866 99999973 222221 1222233332 4443333 5567899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEE
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~ 1001 (1171)
|||||||+.+|+|++.||||.+||.++.+.+++.+++..+ ++|+|+||||...+..|||++.|.||++..
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999853 689999999999999999999999999543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=380.54 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 863 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4689999999643 69999999999999999999999999999999999999999999999999887664 456788
Q ss_pred eEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|+|+||++.+|.. |+++|+.+.. .....+..+ .+.+.++.+ |+....+....+|||||||||+|||||
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999998876 9999996431 112222111 122333332 444445556678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+.+|+||||||||++||+.++..+++.|++..+ ++|||+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999998753 7899999999999877 999999999999999999998753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=395.24 Aligned_cols=265 Identities=19% Similarity=0.291 Sum_probs=212.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCC
Q 001055 98 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAE 177 (1171)
Q Consensus 98 ~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 177 (1171)
+.++++.+|+.+++++.+..++..+|..... ..|+..|+..++......+...+....|+++|++++|+. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~-~~ 94 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN-RT 94 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecC-CC
Confidence 5678999999999999998888877654332 568888877644211000111123347999999999974 24
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccc--------------eecCcEEEEecCCCC
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA--------------VIRGTVAYVPQVSWI 238 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~--------------~~~~~i~~v~Q~~~l 238 (1171)
+++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|.+. .+++.++||||+|++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 579999999999999999999999999999999999986 4566532 235679999999999
Q ss_pred CcccHHHHHhcCCC---CC-HH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 239 FNATVRDNILFGSA---FE-PA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~---~~-~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
|++||+|||.|+.. .. .+ .+..+++.+++.++++ +.+++++.+|||||||||+|||||+++|+||
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~Il 247 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVL 247 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999998642 11 22 2455667777654432 4578889999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||||||++||+.+.+++.+.+.... +++|+|+|||+++++.. ||||++|++|++++.|+++++..++
T Consensus 248 LLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 248 LMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999888665443 47999999999999887 8999999999999999999987653
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=377.08 Aligned_cols=183 Identities=24% Similarity=0.359 Sum_probs=139.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++..+++++|++- .|.-=.=+|..||++|++||||-||||++++|+|.++|++|. ..+ -+|+|
T Consensus 343 v~y~~~~k~~g~F---~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 343 VEYPDLKKTYGDF---KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eecchheeecCce---EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 4445555555421 222222245678999999999999999999999999999998 111 25889
Q ss_pred EcCCcc-cccccHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 867 IPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 867 v~Q~~~-lf~~tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
=||-.. -|++||++-|.-... ..+.-. ...+. .|..++....+....|||||.|||+||-+|.++++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~---------~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYF---------KTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchh---------HHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 999753 478899886632111 111001 11111 26777788888888999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
++|||||++.||.+.+-.+-+.|++... ++|.++|-||+..+.. +||++|++.
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999998664 6899999999999998 999999863
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=338.89 Aligned_cols=209 Identities=29% Similarity=0.423 Sum_probs=187.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+.+++|.++|+.. =-.++++|++||+|||+||||||||||+++|+|+..|.+|+|.|+|+|....+| .++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 5688999999642 246889999999999999999999999999999999999999999999987766 4567999
Q ss_pred EcCCcccccc-cHHhhccCCC----CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS----EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~----~~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
++|+..||.. ||++|+.++- +. ..+.+..++.++|+..+..++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999976 9999997542 11 3456888999999999999998 47999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+++-+||+||||+|+|||.-+..+...+.++. ++.|+++|||.++.+.. +||++++++|+|.+.|..+++.+..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999998876 36899999999999988 9999999999999999999998654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=371.73 Aligned_cols=217 Identities=28% Similarity=0.430 Sum_probs=185.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---ecCCCChHHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~---~i~~~~~~~~r~ 862 (1171)
.|+++|+++.|+.. ++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.++|. |.++. ..-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 37889999999754 6999999999999999999999999999999999999999999999999 66553 33446
Q ss_pred heEEEcCCcccccc-cHHhhccCCCCC-----C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSEH-----S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~~-----~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
+||+|+|+..+|.. ||++|+.|.-+. + +.++.+.|+.+++..+- +..+.+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHHH
Confidence 79999999999965 999999875421 1 23344445554444443 444578999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||||||.-+|++||||||.++||+.-+..+.+-|+++.. +.|+++||||.+++.. ||||++|++|+|...|+|+|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999998764 7999999999999877 9999999999999999999998
Q ss_pred hcCCChHH
Q 001055 1010 SNEGSSFS 1017 (1171)
Q Consensus 1010 ~~~~~~~~ 1017 (1171)
..+.+.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 87765553
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=372.58 Aligned_cols=206 Identities=27% Similarity=0.441 Sum_probs=178.9
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
+|+++++|+.|.... ..++|+||||+|++||+.||+|.||+|||||++++.++..|++|.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 489999999998531 246999999999999999999999999999999999999999987643
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCCC---C-C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGSA---F-E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~-~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
.|..||+++|++.|+ +.||++||.|... . + ..++.+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 345799999999997 5899999998632 1 1 234556677788887766666 4899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|+|||.|||||+|||++.+.|.+.|.+..++ |-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999999987776544 9999999999999986 899999999999999999998
Q ss_pred hhcc
Q 001055 375 SNNG 378 (1171)
Q Consensus 375 ~~~~ 378 (1171)
..++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 7763
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=368.45 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=182.7
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 55667799999999997533369999999999999999999999999999999999999999999999999988777778
Q ss_pred hhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+.|+|+||++.+|++|+++|+.++.....+++.++++ ++.....|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 88999999999999899999997654333333332222 234567899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecCh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~ 1005 (1171)
+|++|||||||++||+.+...+++.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998678999999999999878999999999999988864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=391.47 Aligned_cols=216 Identities=28% Similarity=0.442 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999975 36999999999999999999999999999999999999999999999999997644 45788999
Q ss_pred EEcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|. .|+++|+.++.. ....+..+ .+.++++. .++....+....+||||||||++|||||+++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEF--AKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 9999999886 599999975332 12222211 12333443 2454555566678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.+++.+++.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999754 7899999999999987 999999999999999999999764
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=395.08 Aligned_cols=215 Identities=21% Similarity=0.374 Sum_probs=184.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.|||
T Consensus 4 l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 8999999999422 3699999999999999999999999999999999999999999999999999877654 478999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. ||++|+.+... ... +++.++++..++. ...+....+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-----------PLLDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999964 99999975321 122 2334444544444 444455578999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||+|++|++|++++.|+++++..++...
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~ 229 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAST 229 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccH
Confidence 999999999999999999999999999998754 7899999999999876 9999999999999999999998765433
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=366.54 Aligned_cols=204 Identities=30% Similarity=0.507 Sum_probs=176.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceec---------CcEEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------GTVAY 231 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~---------~~i~~ 231 (1171)
+.|+++|++++|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+++|++|.+.... .+|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 46999999999974 2 599999999999999999999999999999999999999999876422 36999
Q ss_pred EecCC---CCCcccHHHHHhcCCCC-----------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 232 VPQVS---WIFNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 232 v~Q~~---~l~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
|||.. |-|+.||+|-+.+|... +.+.+.++++..++.+..+. ...+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHHH
Confidence 99964 55889999999988432 23677888999998876553 2358999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
.|||||+++|++|+|||||+|+|+.++..+++.+.+.+.+|+||++||||++.+. .+|+|+.| ++++.+.|+++++.+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 9999999999999999999999999999999988777777999999999999876 58999999 567899999999876
Q ss_pred cch
Q 001055 377 NGE 379 (1171)
Q Consensus 377 ~~~ 379 (1171)
...
T Consensus 228 ~~~ 230 (254)
T COG1121 228 EEN 230 (254)
T ss_pred HHH
Confidence 543
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=388.69 Aligned_cols=219 Identities=21% Similarity=0.383 Sum_probs=186.3
Q ss_pred cEEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC-------
Q 001055 786 SIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------- 855 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~------- 855 (1171)
.|+++||+|+|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999996421 3599999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhhheEEEcCCc--ccccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcC
Q 001055 856 ---------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEA 920 (1171)
Q Consensus 856 ---------~~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~ 920 (1171)
....+|+.|+||||+| .+|..|+++|+.+... .+.++.. + .+.++++.+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~--~~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K--LAKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---H--HHHHHHHHc--CCChhHhcCC
Confidence 3456788999999998 6888899999965321 2222221 1 233555554 564 456778
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
+.+||||||||++|||||+.+|+||||||||++||+.+++.+.+.|+++. +++|||+||||++++.. ||||++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998864 47899999999998865 99999999999
Q ss_pred EEEecChhHHhhc
Q 001055 999 VLEYDTPEELLSN 1011 (1171)
Q Consensus 999 i~~~g~~~el~~~ 1011 (1171)
+++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999998754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=375.89 Aligned_cols=209 Identities=32% Similarity=0.512 Sum_probs=177.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEECCEecCCCC--hHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~-----~p~~G~I~i~g~~i~~~~--~~~ 859 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 6999999999999999999999999999999999999 999999999999987766 456
Q ss_pred HhhheEEEcCCcccccccHHhhccCCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcC--CCCCChhHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQR 929 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~--~~~LSgGqk 929 (1171)
++++++|+||++.+|..|+++|+.+... . . ++++.++++.. |+....... +.+||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHHH
Confidence 7888999999999887799999965311 1 1 12233333333 343333333 478999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+.+|++|||||||++||+.+++.+.+.|++..+.+|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999999998655899999999999876 999999999999999988763
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=373.53 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=185.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+|+.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 38999999999643 6999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+++|+.+........ ...+.++++.+ |++ ...+....+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcH------HHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999889999987532111100 01123334332 443 244566778999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCC
Confidence 999999999999999999999998753 7899999999999877 99999999999999999999876543
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=393.55 Aligned_cols=216 Identities=25% Similarity=0.414 Sum_probs=185.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .+++||
T Consensus 6 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 49999999999753 69999999999999999999999999999999999999999999999999987664 357899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
||||++.+|.. ||++|+.+... ... +++.++++..++ ....+.....|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl-----------~~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-----------AGFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999975321 122 233444444444 344455567899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999876654
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 43
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=384.98 Aligned_cols=213 Identities=32% Similarity=0.571 Sum_probs=185.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+.+ ..+|+||||+|++||++|++||||||||||+++|+|+++|++|+|.++|.++..- ....|++||
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 37899999999831 3799999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEcCCcccccc-cHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
|+||+|.++.. |++|||.++... .++.+.+.++..++. ...+....+||+||||||+||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE-----------DKANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc-----------hhhCcchhhcCHHHHHHHHHHHH
Confidence 99999998866 999999865321 123455555554443 32244567899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-C-cEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+++|++|||||||+||||.+...+++.|+++.. + +||+++||.+++++. ||+|++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999875 4 699999999999998 999999999999999999998754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=393.51 Aligned_cols=220 Identities=24% Similarity=0.397 Sum_probs=188.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.||
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999753 699999999999999999999999999999999999999999999999999876653 67899
Q ss_pred EEcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|. .||++|+.+... .+..+.. ..+.++++.+ |++...+..+.+|||||||||+|||||+.+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 499999975321 1112111 2234444443 566666677789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|++|||||||++||+.++..+++.|+++.+ +.|+|+||||++++.. ||+|++|++|++++.|+++++..++...|
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999998754 7899999999999876 99999999999999999999987655443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=390.60 Aligned_cols=220 Identities=28% Similarity=0.463 Sum_probs=186.1
Q ss_pred EEEEeeEEEeCC--CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~--~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 1246999999999999999999999999999999999999999999999999998876554 47
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|||+||++.+|. .|+++|+.+.. .....+.. ..+.++++.+ |++...+....+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999886 59999996431 12222211 1223344443 55555666677899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
|+.+|+||||||||++||+.+...+++.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999998753 7899999999999887 99999999999999999999986543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=350.66 Aligned_cols=221 Identities=27% Similarity=0.432 Sum_probs=191.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++||+..|+.. ++|++|||++++||+++|+||||||||||+++|+|+.+|.+|+|.++|.||...+++.. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 38999999999864 79999999999999999999999999999999999999999999999999999999875 6679
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+||||...+|.. ||+|||.......+. +.-....+++..+-+| .+....+..+.+|||||||.|+|||||+.+|+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999965 999999753221110 0001111334445566 46677788889999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+|+|||||.||-|.-.+.|.+.|+++.+ +.||++|-++...+.. +||.+||++|+|+..|+.+||.+++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999884 4699999999999876 9999999999999999999998753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=373.22 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=185.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
|+++|+++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+...+|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999975 369999999999999999999999999999999999984 689999999999988777778889
Q ss_pred eEEEcCCcccccccHHhhccCCCC---C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSE---H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~---~------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
++|+||++.+|..|+++|+.+... . .++++.+.++..++.+++. ...++.+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHHH
Confidence 999999999998999999965321 0 0112334444444432222 23455677899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
||||+++|++|||||||++||+.+...+.+.|.+..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999998778999999999999876 9999999999999999999987543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=379.67 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=181.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.||
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 38999999999633 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCc--ccccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
|+||+| .++..|+.+|+.+... ... +++.++++..++ ....+....+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHHH
Confidence 999998 5777899999975321 121 223344444444 33444455689999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|++|||||||++||+.+...+++.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999875 37899999999999866 9999999999999999987643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=380.40 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=184.5
Q ss_pred cEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.++++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCcc--cccccHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 865 GIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 865 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+|+||+|. ++..||++|+.+.. ..+. +.+.++++..+ ++...+....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG-----------MQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 55679999997532 1222 22344444444 44444555678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999977999999999999999999988754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=380.33 Aligned_cols=218 Identities=29% Similarity=0.493 Sum_probs=183.2
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHHh
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r 861 (1171)
|+++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999996421 36999999999999999999999999999999999999999999999999997643 34678
Q ss_pred hheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHH
Q 001055 862 KILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 862 ~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~--~~~~~~~~~LSgGqkqrl~l 934 (1171)
++||||||+| .+|..|+++|+.+.. ..++.+..+. +.+.++. .|+. +..+.....||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNI--VGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHH--cCCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 567889999997532 1223222211 2233333 2443 44566778999999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||+.+|++|||||||++||+.+...+++.|+++.+ +.|||+|||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999999866 999999999999999999998753
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=372.36 Aligned_cols=220 Identities=28% Similarity=0.469 Sum_probs=184.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +..++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGL--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCE--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 4689999999743 69999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEcCCcccccc-cHHhhccCCCCCC-HHHH-------HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEHS-DADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~~-~~~i-------~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
|+||++.+|.. |+++|+.+..... ...+ ........+.++++.+ |++...+....+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999998876 9999986432110 0000 0001112244555553 6666677778899999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
||+.+|++|||||||++||+.+++.+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999876 57899999999999977 99999999999999999998865
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=370.87 Aligned_cols=214 Identities=26% Similarity=0.418 Sum_probs=180.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999975 369999999999999999999999999999999999999999999999999876543 3567999
Q ss_pred EcCCccccc-ccHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|. .|+++|+.+.... ...+.. ..+.++++.+ |++...+....+||||||||++|||||
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 5999999753211 111111 1123344443 455555666678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999999998753 6899999999999876 999999999999999999998754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=391.36 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=187.0
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--ceEEECCEecCCCChHHHhh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~--G~I~i~g~~i~~~~~~~~r~ 862 (1171)
+.++++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 469999999999753 69999999999999999999999999999999999999999 999999999977655 357
Q ss_pred heEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
.||||+|++.+|.. ||++|+.+.. .....++.+ .+.+.++. .|++...+....+|||||||||+|||||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~--~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKL--VGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHh--cCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999999966 9999997531 122222111 12233333 2555555666778999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC---CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~---~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|++++.|+++++..++..
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~ 232 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCc
Confidence 999999999999999999999999999988754 6899999999999876 999999999999999999999876644
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 233 ~~ 234 (362)
T TIGR03258 233 GF 234 (362)
T ss_pred HH
Confidence 43
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=393.58 Aligned_cols=212 Identities=26% Similarity=0.435 Sum_probs=185.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|||
T Consensus 4 L~~~nls~~y~~~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 4 IDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred EEEeeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 8999999999753 79999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCccc-ccccHHhhccCCCC-----C---C---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 867 IPQSPVL-FSGTVRFNLDPFSE-----H---S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 867 v~Q~~~l-f~~tv~~nl~~~~~-----~---~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
|||++.+ |+.|+++|+.+... . . .+.+.++++..++.+ ..+....+||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-----------~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-----------FADRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 9999987 56799999864311 0 1 223445555544443 3444567899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||+++|+||||||||++||+.++..+++.|+++. .++|||++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999999999999876 47899999999999976 999999999999999999998753
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=367.89 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=192.8
Q ss_pred CccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh
Q 001055 784 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
.+.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999743 136999999999999999999999999999999999999999999999999987777677788
Q ss_pred heEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 863 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
.++|+||++.+|..|+++|+.+... ....++.+..+..++.++++.+|.|+++..+....+|||||||||+|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999998899999975322 233344555566778899999988999888888999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998777899999999999978999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=369.01 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 863 (1171)
++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964323699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..+ +.........+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHHH
Confidence 999999999886 49999996421 111 223344444444 33444455568999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
|||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 37899999999999986 999999999975
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=388.16 Aligned_cols=216 Identities=27% Similarity=0.457 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EEcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.++. .|+.+|+.++.. ....+..+ .+.++++. .++....+....+||||||||++|||||+++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEA-----VIPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998874 599999975321 12222111 12233433 3555556666778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.++..+++.|+++. .++|||++||+++++.. ||+|++|++|+++..|+++++.+.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47999999999999987 999999999999999999999764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=388.14 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=183.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+|
T Consensus 3 L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 8899999999753 69999999999999999999999999999999999999999999999999977553 4578999
Q ss_pred EcCCcccccc-cHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. |+++|+.+... ....+.. ..+.+.++.+ +++...+....+||||||||++|||||
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-----AKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999975321 1211111 1122333332 444455566678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+||||++++.. ||+|++|++|+|++.|+++++..++..
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~ 230 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT 230 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998764 6899999999999877 999999999999999999999876543
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=372.36 Aligned_cols=220 Identities=29% Similarity=0.440 Sum_probs=180.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~~ 863 (1171)
++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 36999999999999999999999999999999999999999999999999988766 3457788
Q ss_pred eEEEcCCccccc-ccHHhhccCCCCCCHH---HH---HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFSEHSDA---DL---WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~~~~~~---~i---~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
++|+||++.+|. .|+++|+.+....... .+ ........+.+.++.+ |+....+..+.+||||||||++|||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHHH
Confidence 999999998886 5999999642110000 00 0000011223344442 4555566677899999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|+||||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999875 37899999999999986 9999999999999999998874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=357.66 Aligned_cols=188 Identities=29% Similarity=0.415 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-------cCcEEEEec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQ 234 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q 234 (1171)
.+.++++++.|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|.+... ...+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5899999999974 579999999999999999999999999999999999999999875442 235999999
Q ss_pred CCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 235 VSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 235 ~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++.|+ -.||+|||.|+... ..++..+.++.++|..+-+.+|. +|||||||||||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhcC
Confidence 99997 58999999998542 12456778889999988888884 8999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCC
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEG 363 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G 363 (1171)
|+||+||||+++||+.++..+.+.+.+.+. .++|+|+||||.++.-. +|||++|.++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999998888764 48999999999998654 7999999984
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=373.44 Aligned_cols=226 Identities=22% Similarity=0.367 Sum_probs=200.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++++|+.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|.+.. +++.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 38899999999742 4579999999999999999999999999999999999997 6665422 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 230 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
+|+||+|.+|++||++|+........+++.++++.+++...++.+|+++++.++++|.+||||||||++|||||+.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964333566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 389 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 389 (1171)
+||||||++||+.+.+.+.+.+... ..++|+|+|||+++++..||||++|++|++++.|+++++.++...+..++.+.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 9999999999999999999877654 358999999999999988999999999999999999999988788888876654
Q ss_pred h
Q 001055 390 K 390 (1171)
Q Consensus 390 ~ 390 (1171)
.
T Consensus 239 ~ 239 (275)
T cd03289 239 R 239 (275)
T ss_pred h
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=390.31 Aligned_cols=210 Identities=28% Similarity=0.424 Sum_probs=179.9
Q ss_pred EeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----hhheEEEcCC
Q 001055 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQS 870 (1171)
Q Consensus 795 ~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~ 870 (1171)
.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+ |+.|+||||+
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4543 369999999999999999999999999999999999999999999999999999888777 7789999999
Q ss_pred cccccc-cHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 871 PVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 871 ~~lf~~-tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+.+|+. ||++|+.+.. .... +++.++++.+ |++...++.+.+|||||||||+|||||+.+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999975 9999996432 1122 2233344443 4455556666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+||||||||++||+.+++.+++.|.++. .++|+|+||||++++.. ||+|++|++|++++.|+++++++++...|.
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999999999875 37999999999999766 999999999999999999999876654444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=349.14 Aligned_cols=212 Identities=29% Similarity=0.475 Sum_probs=180.0
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.+.|++++++|+|. ++.+++||||+|++||+++|+||||||||||||+|.|+++|++|.+..
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999996 478999999999999999999999999999999999999999987643
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCHHHH----HHHHHHcCchHH-HhcCCCCCccccCCCCCccChHHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARY----EKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+++++|+++|...|| +.||+||+.|.. ..++..+ ..-++.++|... .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 455799999999999 679999999852 2333333 334678888877 77777 48999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
+|+|||||++.||+++++||||+||||.+...+-+.+.+.+.. |.|+|+||||++.+.. |||++++.+|+|+.+|+++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999998887766555443 8999999999999876 6999999999999999999
Q ss_pred HHhhc-chHHHHHH
Q 001055 373 DLSNN-GELFQKLM 385 (1171)
Q Consensus 373 ~l~~~-~~~~~~~~ 385 (1171)
++.+. .+..++++
T Consensus 232 el~~sd~P~v~qf~ 245 (263)
T COG1127 232 ELLASDDPWVRQFF 245 (263)
T ss_pred HHHhCCCHHHHHHh
Confidence 99765 33444433
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=353.82 Aligned_cols=203 Identities=27% Similarity=0.430 Sum_probs=176.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
+|+++|+||.|. ++.+++|+||+|++||+++++|||||||||+||+|.++++|++|.+.. +|.+|
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 489999999997 468999999999999999999999999999999999999999987532 56679
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchH--HHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~--~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|||-|..-|| ..||.|||.+-.. +++ ++..+.++..+|.. ..++.| .+|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999998 7899999987532 333 34555677777753 456666 4899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+|+++||||++|||.++..+-+.+++..+ -++|+|+||||+++.- .+|||++|++|+++..+++++++.+
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999888777654 4999999999999864 5799999999999999999999887
Q ss_pred c
Q 001055 378 G 378 (1171)
Q Consensus 378 ~ 378 (1171)
+
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=367.37 Aligned_cols=216 Identities=29% Similarity=0.455 Sum_probs=180.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
|+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEcCCcccccc-cHHhhccCCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~~-~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+||++.+|.. |+++|+.+..... ..+.. ..+.+.++.++ +++...+....+||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRK-----ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHH-----HHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998876 9999997532211 11111 11222333321 23444566677899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|||||||++||+.++..+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999875 47899999999999877 99999999999999999888753
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=370.32 Aligned_cols=217 Identities=29% Similarity=0.490 Sum_probs=182.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~~ 859 (1171)
++++||+++|++. ++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 6999999999999999999999999999999999999998 99999999998753 3455
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+++.++|+||++.+|..|+++|+.+.. . ... +.+.++++..++.+.+ ....+....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHHH
Confidence 678899999999988899999996421 1 111 1233333333332111 034556678899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987767899999999999876 99999999999999999999875
Q ss_pred cC
Q 001055 1011 NE 1012 (1171)
Q Consensus 1011 ~~ 1012 (1171)
..
T Consensus 233 ~~ 234 (247)
T TIGR00972 233 NP 234 (247)
T ss_pred CC
Confidence 43
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=364.06 Aligned_cols=203 Identities=29% Similarity=0.483 Sum_probs=176.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++|.|+ ++++++|+||++++|++++|+||||||||||||+|+|.++|.+|.+.. +.+.+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 468999999999999999999999999999999999999999886543 22369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCC-----------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
|||||.+.. +..||+|-+.+|+.. |.+.+.++++.+++.+..++. ..+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999866 588999999998521 223466778888888776543 358999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
.|||||+++|++++||||||+||....-.+++.+.+.. .+|+|+|+|+||+.... .||+++.|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999888776 45999999999998865 68999999999999999999887
Q ss_pred hcc
Q 001055 376 NNG 378 (1171)
Q Consensus 376 ~~~ 378 (1171)
+..
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=367.26 Aligned_cols=214 Identities=26% Similarity=0.435 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++..+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975223699999999999999999999999999999999999999999999999998754 3566788999
Q ss_pred EcCCcccc-cccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+| ..|+++|+.+.. .....+.. ..+.++++.+ ++....+....+||||||||++|||||+.+|
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 99999988 469999986421 11111111 1123333332 4444445556789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999998777999999999999976 999999999999999998875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=365.98 Aligned_cols=206 Identities=26% Similarity=0.455 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999965 369999999999999999999999999999999999999999999999999876442 4678999
Q ss_pred EcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.+... ....+.. ..+.++++. .|++...+....+||||||||++|||||+.+|
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 149 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREP 149 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHH--cCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 599999964211 1111111 112333433 24555555666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.++..+++.|+++.+ ++|||++||+++++.. ||+|++|++|++++.|
T Consensus 150 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 150 SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998753 7899999999999877 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=377.04 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCc--ccccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
|+||++ .++..|+.+|+.+... ... +.+.++++..++ +.........||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGM-----------EDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCC-----------hhhhhCCcccCCHHHHHHHHHHH
Confidence 999998 4556799999975321 122 223344444444 44444555689999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||+.+|+||||||||+|||+.+...+++.|+++.+ ++|||++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999888999999999999999999988753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=388.52 Aligned_cols=216 Identities=24% Similarity=0.405 Sum_probs=185.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.||
T Consensus 14 ~L~l~~l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 49999999999753 699999999999999999999999999999999999999999999999999876653 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
||||++.+|.. ||++|+.+... ... +++.++++..++ +...+....+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL-----------EEFAQRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999966 99999975321 122 223444444444 444445557899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||.+++.. ||+|++|++|+|++.|+++++..++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998764 7899999999999876 999999999999999999999876654
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 33
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=370.41 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=185.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 369999999999999999999999999999999999999999999999999987777777889999
Q ss_pred EcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch--hhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~--~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+||++.+|. .|+++|+.+... ....+. ...+.++++.+ |+.. ..++.+.+||||||||++|||||++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999886 599999964311 111111 12234455553 4443 5566778899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999998753 7899999999998876 9999999999999999999887543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=371.52 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=183.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 49999999999643 69999999999999999999999999999999999975 689999999999864 2345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+.. .. . .+++.++++.+++.+.+ ....+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 12334444444443222 22345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 237 ~~~ 239 (253)
T PRK14242 237 TRP 239 (253)
T ss_pred cCC
Confidence 543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=377.98 Aligned_cols=217 Identities=23% Similarity=0.396 Sum_probs=181.9
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 859 (1171)
|+++||+|+|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+|+.+|||+|+| .+|..|+.+|+.+... ....++.+ .+.+.++.+ |+. ...+....+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 6888899999975321 12222211 122333332 443 2445667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998875 47899999999999866 99999999999999999999875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.80 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=184.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 59999999999753 699999999999999999999999999999999999997 48999999998853 2344
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.|+|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+.+ ....+....+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 57888999999999888899999974321 11 12234444444432211 22345567789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+++.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767999999999999876 9999999999999999999998
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 238 ~~~~ 241 (254)
T PRK14273 238 FNPK 241 (254)
T ss_pred hCCC
Confidence 6544
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=381.51 Aligned_cols=215 Identities=24% Similarity=0.409 Sum_probs=185.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+||
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCE--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 8899999999743 69999999999999999999999999999999999999999999999999876 44567889999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|.. |+.+|+.++.. ...++..+ .+.+.++.+ |++...+.....||||||||++|||||+++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998866 99999974321 11111111 123344443 5666667777899999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
++|||||||+|||+.+.+.+++.|+++..++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999999988 999999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=370.31 Aligned_cols=220 Identities=28% Similarity=0.417 Sum_probs=180.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 863 (1171)
++++||+++|+.+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999622 369999999999999999999999999999999999999999999999999876654 346788
Q ss_pred eEEEcCCccccc-ccHHhhccCCCCCCH---HHH---HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFSEHSD---ADL---WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~~~~~---~~i---~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
++|+||++.+|. .|+++|+.+...... ... ........+.++++.+ |++...+....+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 999999998886 599999964211000 000 0000111233344442 5555566677889999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999998753 7899999999999876 9999999999999999998863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=377.75 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=184.7
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 859 (1171)
++++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998653 2356
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+|+.||||||+| .+|..|+.+|+.+.. ..+..+..+ .+.++++. .|++ ...+..+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 578789999997532 112222221 13344554 3676 3456778899999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 37999999999999866 99999999999999999999875
Q ss_pred c
Q 001055 1011 N 1011 (1171)
Q Consensus 1011 ~ 1011 (1171)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=390.21 Aligned_cols=217 Identities=22% Similarity=0.348 Sum_probs=182.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+|
T Consensus 4 l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 4 VTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 8999999999753 69999999999999999999999999999999999999999999999999987654 3567999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|||++.+|.. ||++|+.+... ....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.+|
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~--lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEIN-----QRVNQVAEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999965 99999975321 1221111 112233333 24444455566789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
++|||||||++||+.+++.+.+.|+++.+ +.|+|+||||++++.. ||+|++|++|++++.|+++++...+..
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 99999999999999999999999998753 7899999999999877 999999999999999999999876543
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=368.20 Aligned_cols=217 Identities=28% Similarity=0.458 Sum_probs=181.9
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 26999999999999999999999999999999999999999999999999987765443 47
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+.++|+||++.+|. .|+++|+.+.. .....+. ...+.++++.+ |++...+....+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999986 59999986421 1111111 11233444443 55555556667899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999998753 7899999999999877 99999999999999999988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=365.32 Aligned_cols=208 Identities=28% Similarity=0.465 Sum_probs=176.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999998865 33566788999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.++.. |+++|+.+.. ... ++++.+.++.. |++...+....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999988865 9999986421 111 12233334443 344444555678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998753 6899999999999887 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.49 Aligned_cols=219 Identities=25% Similarity=0.398 Sum_probs=185.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 857 (1171)
+.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 459999999999753 69999999999999999999999999999999999986 589999999999853 345
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
..+|++|+|+||++.+|..|+++|+.+.. ..+. +++.++++.+++.+. +....++...+||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCHHHH
Confidence 56788999999999998899999997431 1122 223444444433221 22445666788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+.+|+||||||||++||+.+++.+.+.|+++..++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998667899999999999876 999999999999999999998
Q ss_pred hhcC
Q 001055 1009 LSNE 1012 (1171)
Q Consensus 1009 ~~~~ 1012 (1171)
....
T Consensus 243 ~~~~ 246 (260)
T PRK10744 243 FTKP 246 (260)
T ss_pred HhCC
Confidence 7643
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=369.61 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=184.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 38999999999753 699999999999999999999999999999999999984 69999999999988777788
Q ss_pred hhheEEEcCCcccc-cccHHhhccCCCC-----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 861 RKILGIIPQSPVLF-SGTVRFNLDPFSE-----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf-~~tv~~nl~~~~~-----~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
|+.|+|+||++.+| ..|+++|+.+... .. ++++.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence 88999999999765 5699999964211 01 12233444444332211 12345566789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999998678999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 643
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=377.16 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=182.2
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 859 (1171)
++++||+++|++.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996421 369999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
.|+.||||||+| .+|+.||++|+.+.. ..+..+..+ .+.+.++.+ |++ ...+..+.+|||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778899999998 577789999996431 112222211 123334432 454 3345667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+...+.+.|+++.. +.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999875
Q ss_pred c
Q 001055 1011 N 1011 (1171)
Q Consensus 1011 ~ 1011 (1171)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 3
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=378.61 Aligned_cols=218 Identities=22% Similarity=0.349 Sum_probs=180.8
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC---------
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 854 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~--------- 854 (1171)
|+++||+++|++.. .++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc
Q 001055 855 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD 914 (1171)
Q Consensus 855 ---------------~~~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~ 914 (1171)
.+...+|+.||||||+| .+|..||++|+.+.. ....+++.+ .+.++++. .|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIEL--VGLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCC
Confidence 13456788899999986 577789999997532 122222211 12233333 2453
Q ss_pred -hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEE
Q 001055 915 -AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRI 991 (1171)
Q Consensus 915 -~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i 991 (1171)
...+....+||||||||++|||||+.+|++|||||||++||+.+...+++.|+++. .++|||+||||++.+.. ||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34566678899999999999999999999999999999999999999999998875 47899999999998866 9999
Q ss_pred EEEeCcEEEEecChhHHhhc
Q 001055 992 LLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 992 ~vl~~G~i~~~g~~~el~~~ 1011 (1171)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.66 Aligned_cols=219 Identities=23% Similarity=0.432 Sum_probs=184.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 857 (1171)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .++
T Consensus 12 ~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 459999999999753 69999999999999999999999999999999999987 689999999999853 455
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
..+|+.++|+||++.+|..|+++|+.+... .. ++++.++++.+++.. +++...+....+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 677888999999999998899999975321 11 122333344433321 23344566678899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeC-----------cEE
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GRV 999 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~-----------G~i 999 (1171)
++|||||+.+|++|||||||++||+.+...+++.|+++..++|||++||+++.+.. ||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999988667899999999999877 999999996 679
Q ss_pred EEecChhHHhhcC
Q 001055 1000 LEYDTPEELLSNE 1012 (1171)
Q Consensus 1000 ~~~g~~~el~~~~ 1012 (1171)
++.|+++++...+
T Consensus 243 ~~~~~~~~~~~~~ 255 (269)
T PRK14259 243 VEFNETKKIFNSP 255 (269)
T ss_pred EEeCCHHHHHhCc
Confidence 9999999997643
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=367.01 Aligned_cols=215 Identities=29% Similarity=0.460 Sum_probs=182.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999887665553 56799
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++|||||+.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 99999964211 1111111 1234455543 566666777789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998875 47899999999998877 99999999999999999988764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=380.23 Aligned_cols=216 Identities=29% Similarity=0.443 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+.+|
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 48999999999753 699999999999999999999999999999999999999999999999998653 355688899
Q ss_pred EEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.++. .|+++|+.++. .....+..+. +.++++. .++....+....+||||||||++|||||+.+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 59999996421 1222222111 2233333 2455555666678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.+...+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47899999999999987 999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=370.15 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=182.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecC--CCChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~--~~~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 38999999999753 699999999999999999999999999999999999987 4999999999986 34555
Q ss_pred HHhhheEEEcCCcccccc-cHHhhccCCC---CC--CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 859 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH--SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~--~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.+|++++|+||++.+|.. |+.+|+.+.. .. .. +.+.++++..++.+. +....+....+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHHH
Confidence 678899999999999865 9999996421 11 11 123333333333211 1233456677899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998767999999999999876 99999999999999999999
Q ss_pred HhhcC
Q 001055 1008 LLSNE 1012 (1171)
Q Consensus 1008 l~~~~ 1012 (1171)
+.+..
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 87543
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=370.63 Aligned_cols=220 Identities=25% Similarity=0.425 Sum_probs=184.8
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FG 856 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~ 856 (1171)
.+.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCE--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 3469999999999753 699999999999999999999999999999999999975 89999999999864 34
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
...+|+.++|+||++.+|..|+.+|+.+.. .. . .+++.++++..++.+.+ ....+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence 556788899999999999889999996421 11 1 12234444444443221 12345567789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1006 (1171)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988667899999999999976 9999999999999999999
Q ss_pred HHhhcC
Q 001055 1007 ELLSNE 1012 (1171)
Q Consensus 1007 el~~~~ 1012 (1171)
++....
T Consensus 248 ~~~~~~ 253 (267)
T PRK14235 248 KMFTNP 253 (267)
T ss_pred HHHhCC
Confidence 987543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=352.24 Aligned_cols=220 Identities=27% Similarity=0.443 Sum_probs=192.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
+++++++++|++- .+++||||++++||++||+|||||||||++++|+|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 7899999999864 69999999999999999999999999999999999999999999999999999999886 55699
Q ss_pred EEcCCcccccc-cHHhhccCCCC------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~------------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
--+|.+.+|++ ||.||+..... ....+-.++.+ .+.++++. .|+....++...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999976 99999853210 00011122222 24455665 4888888888999999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
.|||||+.+|++|+||||.+||.+.....+.+.|+++.+ +.|+++|.|||+.+.. ||||+||+.|+++++|+|+|+.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999885 4899999999999988 9999999999999999999998
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=359.85 Aligned_cols=198 Identities=26% Similarity=0.447 Sum_probs=168.0
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999752 369999999999999999999999999999999999999999999999998853 4567789999
Q ss_pred cCCc--ccccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 868 PQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 868 ~Q~~--~lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
||++ .++..|+++|+.+... ....++.++++..++.+ ..+.....||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-----------LKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-----------hcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 3567899999975321 11234455555544443 344455689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999874 57899999999999986 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=341.79 Aligned_cols=460 Identities=19% Similarity=0.239 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001055 516 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 595 (1171)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~ 595 (1171)
.+.+.+........+...-.++|.++..+++..|+.-+++...++++.++++|+..|.- -...++.+......++.+..
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf-~~s~lp~~~qa~il~l~s~a 140 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISF-AFSRLPELVQAIILTLGSAA 140 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceee-hHhhhHHHHHHHHHHHHHHH
Confidence 34445566667778888999999999999999999999999999999999999999872 22334445555444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHH--HHHHHHH----
Q 001055 596 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR--MADINGK---- 669 (1171)
Q Consensus 596 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~--~~~~~~~---- 669 (1171)
.++++++.+..+.+..+++.+....+.+....+.-+...+....+...++..+.|.+.++..+...+ ..+.+..
T Consensus 141 YLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~ 220 (546)
T COG4615 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQE 220 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHH
Confidence 5556655444333333222222222222222222233344556678889999999999887654332 2222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 670 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 749 (1171)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 749 (1171)
..+.....+........|..+.+..+.++..|+. +......++ .+.++ +...+.+..++.++........
T Consensus 221 ~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la----l~~~w~st~---~a~ti---vlvlLflr~pL~s~vgilP~l~ 290 (546)
T COG4615 221 YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA----LSLGWASTN---VAATI---VLVLLFLRTPLLSAVGILPTLL 290 (546)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhccchhh---HHHHH---HHHHHHHhhHHHHHHhhhhHHH
Confidence 1111122222222233444443333222222222 211221111 11111 2222233344444455555566
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHH
Q 001055 750 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 829 (1171)
Q Consensus 750 ~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKST 829 (1171)
.+..+.+++.++-..|.... .....+.+.| ..|+++||.|.|.+.. --+..||++|++||+|-|+|.|||||||
T Consensus 291 ~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHH
Confidence 77788888887754332211 1112222334 3599999999997643 3578999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHc
Q 001055 830 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909 (1171)
Q Consensus 830 Ll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~l 909 (1171)
++++|+|+++|++|+|++||.+++..+++++|+-++-|+-|-.+|+.++- +-+..+++.+..-+++..+.....-
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLel~~ktsl- 439 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLELAHKTSL- 439 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHHHhhhhcc-
Confidence 99999999999999999999999999999999999999999999986542 1112345555544544333322111
Q ss_pred cCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh
Q 001055 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID 987 (1171)
Q Consensus 910 p~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~ 987 (1171)
.+|- -....||-|||+||++--|++.+.||+++||=-+.-||.-++.+...+.-.. .|+||+.||||-.....
T Consensus 440 ~d~~-----fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ 514 (546)
T COG4615 440 NDGR-----FSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH 514 (546)
T ss_pred cCCc-----ccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhh
Confidence 1110 0123699999999999999999999999999999999999999888765544 48999999999999999
Q ss_pred cCEEEEEeCcEEEEe
Q 001055 988 CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 988 ~d~i~vl~~G~i~~~ 1002 (1171)
|||++.|.+|+++|.
T Consensus 515 ADrll~~~~G~~~e~ 529 (546)
T COG4615 515 ADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHhcCceeec
Confidence 999999999999986
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=374.25 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=182.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 38999999999632 36999999999999999999999999999999999999999999999999984 2345567889
Q ss_pred eEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||+||++ .+|..|+++|+.+.. ..+..+..+. +.+.++. .|+....+....+||||||||++|||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHH--CCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999998 467889999996421 1122221111 1223333 2444555667789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998764 7899999999999976 99999999999999999999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=359.55 Aligned_cols=202 Identities=27% Similarity=0.429 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999964 3799999999999999999999999999999999999999999999999988654 456778999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.++. ...++++.++++..++.+. .+.....||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS-----------AKKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998774 69999996432 1234445555565555443 33445689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999875 47899999999999976 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=363.50 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----H
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~ 860 (1171)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999988766432 3
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
++.++|+||++.+|.. |+++|+.+... ....+. ...+.++++.+ |++...+....+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5679999999998876 99999975321 111111 11233444443 5555566677889999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998764 7899999999999878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=373.20 Aligned_cols=213 Identities=25% Similarity=0.452 Sum_probs=182.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 8899999999643 259999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCc--ccccccHHhhccCCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 867 IPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 867 v~Q~~--~lf~~tv~~nl~~~~---~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+||++ .+|..|+.+|+.+.. ....+ .+.++++.. |+..........||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHHHH
Confidence 99998 367789999996421 12222 233333333 44444455567899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999999999753
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.44 Aligned_cols=215 Identities=28% Similarity=0.443 Sum_probs=183.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 7899999999643 699999999999999999999999999999999999999999999999998766543 3458999
Q ss_pred EcCCcccc-cccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.++ ..|+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++|||||+++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5699999964321 1111111 1234455543 6666667777899999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999978999999999999999999988764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=365.89 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=185.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 7899999999753 69999999999999999999999999999999999999999999999999887766543 45699
Q ss_pred EEcCCcccccc-cHHhhccCCCCCCHH---H---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEHSDA---D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~~~~---~---i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|+||++.+|.. |+++|+.+....... . .........+.++++.+ |++...+....+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999976 999999753211000 0 00001112234455543 566666777789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+.+|++|||||||++||+.+...+++.|+++..++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998777999999999999987 99999999999999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=379.18 Aligned_cols=226 Identities=23% Similarity=0.388 Sum_probs=186.7
Q ss_pred cEEEEeeEEEeCCC-----------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001055 786 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 854 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-----------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~ 854 (1171)
.++++|++++|+.. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 1369999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---HhhheEEEcCCc--cccc-ccHHhhccC----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC
Q 001055 855 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 922 (1171)
Q Consensus 855 ~~~~~---~r~~i~~v~Q~~--~lf~-~tv~~nl~~----~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~ 922 (1171)
.+... +|++|+||||+| .++. .||.+|+.. +. ..+.++..+. +.+.++.+ |+. ...+....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcc
Confidence 77543 567899999998 4664 599999852 11 1232222211 22333332 342 34466678
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|.+|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998753 7899999999999987 999999999999
Q ss_pred EEecChhHHhhcCCChHHH
Q 001055 1000 LEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~~~~~~ 1018 (1171)
++.|+++++.++....|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998766555554
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=385.87 Aligned_cols=221 Identities=22% Similarity=0.403 Sum_probs=185.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.||
T Consensus 19 ~l~l~~v~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 59999999999753 69999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|.. ||.+|+.+.. .....++.+ .+.+.++. .|+....+....+|||||||||+|||||+++
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~--l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGL--VHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 9999997532 112222211 12233333 2444555566678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++++.. ||||++|++|++++.|+++++..++...|.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 99999999999999999999998887764 37899999999999876 999999999999999999999877654443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=360.32 Aligned_cols=202 Identities=27% Similarity=0.446 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++++|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999653 6999999999999 99999999999999999999999999999999999987665 667889999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+++|+.+.. ... .+++.++++..++. ...+....+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999986421 111 12233444444443 333445578999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998777999999999999976 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=364.04 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=177.2
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
.++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998877644 3
Q ss_pred h-hheEEEcCCcccccc-cHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 861 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 861 r-~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
| +.++|+||++.+|.. |+++|+.+. ......+.. ..+.+.++. .|++...+....+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAA--VGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999988865 999998642 111111111 112334444 2555555666778999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
||++.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++++..+|++++|++|+|++.|.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 3789999999999998889999999999998764
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=373.14 Aligned_cols=213 Identities=30% Similarity=0.412 Sum_probs=179.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----hhh
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 863 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~ 863 (1171)
.++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567888998754 69999999999999999999999999999999999999999999999999887665443 357
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|. .|+++|+.+.. .... +++.+.++.. |++...+....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 999999998885 59999996421 1111 2233333333 444444555678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+..
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999998753 7899999999999876 9999999999999999999998654
Q ss_pred C
Q 001055 1013 G 1013 (1171)
Q Consensus 1013 ~ 1013 (1171)
.
T Consensus 253 ~ 253 (269)
T cd03294 253 A 253 (269)
T ss_pred C
Confidence 4
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=385.70 Aligned_cols=208 Identities=32% Similarity=0.450 Sum_probs=173.8
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----hhheEEEcCCcccccc-c
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-T 877 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-t 877 (1171)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++++|+||++.+|.. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776553 3579999999999864 9
Q ss_pred HHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCC
Q 001055 878 VRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 954 (1171)
Q Consensus 878 v~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~L 954 (1171)
+++|+.+.. .....+.. ..+.++++. .|++...+....+||||||||++|||||+.+|+||||||||++|
T Consensus 123 v~enl~~~~~~~~~~~~~~~-----~~~~e~L~~--~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L 195 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERR-----EKALDALRQ--VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 999997431 11111111 112233333 24444555566789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 955 DVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 955 D~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+.+++.+++.|.++. .++|+|+|||+++++.. ||+|++|++|++++.|++++++..+...|.
T Consensus 196 D~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 9999999999999874 37899999999999876 999999999999999999999876544443
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=361.60 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=174.9
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++||+++|++.. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997531 169999999999999999999999999999999999999999999999999875 445678899
Q ss_pred EEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||++.+|.. |+++|+.+.. .....+.. ..+.+.++.+ |++...+....+||||||||++|||||+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999998875 9999986421 11111111 1123334432 45555566677899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++++.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999875 47899999999999877 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=367.56 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=183.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p---~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 48999999999753 69999999999999999999999999999999999997 3 58999999999863 3445
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC----CCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+... ..+.+ +.++++..++.+.+ ....+....+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67888999999999998899999964321 11121 22233333332211 23345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|+||||||||++||+.+...+++.|+++..++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
.+..
T Consensus 243 ~~~~ 246 (259)
T PRK14274 243 SNPD 246 (259)
T ss_pred hCCC
Confidence 6543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=364.83 Aligned_cols=217 Identities=27% Similarity=0.459 Sum_probs=183.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--------hH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 858 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--------~~ 858 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 8999999999743 6999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhhheEEEcCCccccc-ccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~-~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
.+|+.++|+||++.+|. .|+++|+.+. ......+.. ..+.+.++.+ |++...+....+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999998886 5999999642 111111111 1123444443 5555566777899999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||+.+|+||||||||++||+.+++.+.+.|+++.. ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998754 7899999999999977 999999999999999999998754
Q ss_pred C
Q 001055 1012 E 1012 (1171)
Q Consensus 1012 ~ 1012 (1171)
.
T Consensus 235 ~ 235 (250)
T PRK11264 235 P 235 (250)
T ss_pred C
Confidence 3
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=371.32 Aligned_cols=217 Identities=20% Similarity=0.326 Sum_probs=182.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~ 862 (1171)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 48999999999643 699999999999999999999999999999999999999999999999998766543 3467
Q ss_pred heEEEcCCcccccc-cHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.++|+||++.+|.. |+.+|+.+. ......+.. ..+.+.++. .|+....+....+||||||||++||||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEA--VGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999876 999998642 111111111 112233333 245555556667899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998753 6899999999999877 999999999999999999998764
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=365.27 Aligned_cols=215 Identities=26% Similarity=0.437 Sum_probs=184.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-HhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 865 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|+.++
T Consensus 4 l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 8899999999753 6999999999999999999999999999999999999999999999999998776544 467899
Q ss_pred EEcCCcccccc-cHHhhccCCCCC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++.+|.. |+++|+.+.... ...+ ....+.++++.+ |++...+.....||||||||++|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999988875 999999753211 1111 112334555554 56666677778999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998865 47899999999988876 99999999999999999998864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=370.90 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 49999999999643 6999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEcCCcccccc-cHHhhccCCCC--------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~--------~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
|+||++.++.. |+.+|+.+... . .++++.++++.++ ++...+....+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVG-----------LKPLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-----------CHHHhcCCcccCCHHHHHHHH
Confidence 99999877654 99999964211 0 1122334444443 333444555689999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999998753 7899999999999976 99999999999999999988764
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=368.40 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=182.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCC--hH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 49999999999643 699999999999999999999999999999999999985 7999999999986432 34
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
.+|+.++|+||++.+|..|+++|+.+.. ..... .+.++++.+++.+ .+....+....+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHHH
Confidence 5678899999999988899999996421 11221 2233333333211 11233456677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+|||||+.+|+||||||||++||+.+...+++.|+++.+++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988667999999999999876 99999999999999999999976
Q ss_pred cCC
Q 001055 1011 NEG 1013 (1171)
Q Consensus 1011 ~~~ 1013 (1171)
.+.
T Consensus 243 ~~~ 245 (258)
T PRK14268 243 NPR 245 (258)
T ss_pred CCC
Confidence 543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=370.15 Aligned_cols=217 Identities=28% Similarity=0.520 Sum_probs=182.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 865 (1171)
++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 36999999999999999999999999999999999999999999999999997765 356778899
Q ss_pred EEcCCcc--cccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV--LFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~--lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||+|. ++..|+.+|+.+... .+..+..+ .+.+.++. .|++...+..+..||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAE--IGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--CCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999985 556799999975321 12111111 12233333 355555666678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||++||+.++..+++.|+++. .++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999998875 47899999999999977999999999999999999998653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=363.61 Aligned_cols=216 Identities=26% Similarity=0.445 Sum_probs=183.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 864 (1171)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999974 36999999999999999999999999999999999999999999999999987643 34567889
Q ss_pred EEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++.+|. .|+++|+.+.. .....+.. ..+.+.++. .|++...+.....||||||||++|||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAK--VGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHH--cCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998885 59999996421 11111111 123344554 36666667777899999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999875 47999999999999977 999999999999999999998754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=360.29 Aligned_cols=206 Identities=22% Similarity=0.384 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 699999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.+.. .....+..+ .+.++++. .|++...+....+||||||||++|||||+.+|
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 149 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAEL--LQIEHLLDRKPKQLSGGQRQRVALGRAIVREP 149 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH--cCCHHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 59999996431 112221111 12233333 24555556666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998753 7899999999999877 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=366.38 Aligned_cols=217 Identities=29% Similarity=0.495 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----------
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 856 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---------- 856 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 4789999999743 6999999999999999999999999999999999999999999999999986543
Q ss_pred ---hHHHhhheEEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 857 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 857 ---~~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
...+|+.++|+||++.+|. .|+.+|+.+.. .....+.. ..+.++++.+ |++...+....+|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGGQ 151 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHHH
Confidence 2356788999999998885 69999996421 11111111 1233444443 55555666677899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998753 7899999999999876 999999999999999999
Q ss_pred hHHhhcC
Q 001055 1006 EELLSNE 1012 (1171)
Q Consensus 1006 ~el~~~~ 1012 (1171)
+++.+..
T Consensus 232 ~~~~~~~ 238 (252)
T TIGR03005 232 DEIFRQP 238 (252)
T ss_pred HHHhcCC
Confidence 9987554
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=369.11 Aligned_cols=219 Identities=27% Similarity=0.466 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999633347999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++ .++..|+++|+.+.. ....++..+ .+.++++.+ |++...+....+||||||||++|||||+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 345679999997521 122222111 123333332 45555566667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|++|||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998753 4899999999999877999999999999999999888653
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=371.68 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=184.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---ceEEECCEecCCCChHHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~---G~I~i~g~~i~~~~~~~~r~ 862 (1171)
.|+++|++++|++...++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 599999999996533469999999999999999999999999999999999999998 89999999998777677888
Q ss_pred heEEEcCCcc--cccccHHhhccCCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 863 ILGIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 863 ~i~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
++||+||++. ++..|+.+|+.+.. ..+.++ +.++++.+ |+....+....+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHH
Confidence 9999999983 55779999997431 122222 33333333 4444455566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||+.+|++|||||||++||+.+...+.+.|+++.. ++|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 7899999999999977999999999999999999998753
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=347.20 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=164.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999975433699999999999999999999999999999999999999999999999988665 5567888999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+||++.+|+.|+++|+ ..+||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999886 35799999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|||||++||+.+.+.+++.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999889999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=364.57 Aligned_cols=219 Identities=29% Similarity=0.441 Sum_probs=182.9
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 857 (1171)
+.++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 358999999999753 699999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++.+++.+ ++....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHHH
Confidence 56788899999999988889999996421 11 1 122333333333321 122344566788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998668899999999999877 999999999999999999998
Q ss_pred hhcC
Q 001055 1009 LSNE 1012 (1171)
Q Consensus 1009 ~~~~ 1012 (1171)
....
T Consensus 233 ~~~~ 236 (250)
T PRK14240 233 FTNP 236 (250)
T ss_pred HhCC
Confidence 7543
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=365.65 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=182.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC---------
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--------- 855 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~--------- 855 (1171)
+.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 459999999999753 699999999999999999999999999999999999999999999999988542
Q ss_pred ----ChHHHhhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCC
Q 001055 856 ----GLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFS 925 (1171)
Q Consensus 856 ----~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LS 925 (1171)
....+++.++|+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |+.... +....+||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS 154 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHLS 154 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccCC
Confidence 123567889999999999875 9999986421 11111111 1123344443 444433 55667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999998754 7999999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q 001055 1004 TPEELLSN 1011 (1171)
Q Consensus 1004 ~~~el~~~ 1011 (1171)
+++++...
T Consensus 235 ~~~~~~~~ 242 (257)
T PRK10619 235 APEQLFGN 242 (257)
T ss_pred CHHHhhhC
Confidence 99998754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=372.29 Aligned_cols=217 Identities=26% Similarity=0.446 Sum_probs=182.0
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 859 (1171)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 3699999999999999999999999999999999999999999999999998643 2345
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
.++.|+|+||+| .+|..|+.+|+.+.. ....++.. ..+.++++.+ |++ ...+....+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK-----EKALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 577789999996421 11222211 1133444443 564 3456677899999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999876 99999999999999999999875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=362.42 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-Hhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 864 (1171)
.++++|++++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998776554 56789
Q ss_pred EEEcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+|+||++.+|.. |+++|+..... ....+..+. +.+.++.++ ++.........+||||||||++|||||+.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999998875 99999965211 111111111 122222221 1223334456789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999875 47999999999998876 99999999999999999999864
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=365.22 Aligned_cols=211 Identities=28% Similarity=0.439 Sum_probs=181.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EcCCccc-ccccHHhhccCCCC-C--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVL-FSGTVRFNLDPFSE-H--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~l-f~~tv~~nl~~~~~-~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+ +..|+++|+.+... . . +..+.++++.. |++...+....+||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 56699999965321 1 1 11223333333 444455566778999999999999999
Q ss_pred c------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 939 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 939 l------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+ .+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999875 47899999999999976 9999999999999999998886
Q ss_pred h
Q 001055 1010 S 1010 (1171)
Q Consensus 1010 ~ 1010 (1171)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=353.79 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=179.9
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+|+||+|.+|+.|+++|+.+.....++...++++.+++.+++..+|.|+++..+....+||||||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754445556777788888999999999999999988899999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHH-HHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 944 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~-~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
++||||||++||+.+.+.+.+ .++... .++|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998887 456553 3689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=361.41 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++|++++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||++.+|. .|+++|+.+.. ....... ...+.++++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 59999986421 1111111 11123334432 44445555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEe--CcEEEEecChh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1006 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 1006 (1171)
+|++|||||||++||+.+.+.+++.|++.. .++|||+|||+++++.. ||++++|+ +|++++.++.+
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999874 37899999999998876 99999999 79999987753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=365.39 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=181.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC---CCC--CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~---~~p--~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++|+++.|+.. ++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCE--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 48999999999753 699999999999999999999999999999999997 454 589999999998754 235
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+.+|+.+.. .. .. ..+.++++.+++.+. +.+..+..+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-------VKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-------hhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 11 122333333332211 223455667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999998
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=358.50 Aligned_cols=204 Identities=27% Similarity=0.476 Sum_probs=170.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975223699999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCcc--cccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 868 PQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 868 ~Q~~~--lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
||++. ++..|+++|+.+.. .....+..+ .+.++++. .|++.........||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALEL--VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99983 56779999996421 111111111 12233333 24545555666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998754 7899999999999988 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=366.93 Aligned_cols=211 Identities=26% Similarity=0.447 Sum_probs=182.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECCE--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999887777778888999
Q ss_pred EcCCcccccc-cHHhhccCCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~--------~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
+||++.++.. |+.+|+.+... .. ++.+.++++.. |++...+.....||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHHH
Confidence 9999988866 99999975310 01 11223333333 44444556677899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998875 47899999999999876 99999999999999999888763
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=357.04 Aligned_cols=205 Identities=29% Similarity=0.526 Sum_probs=181.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.+.++|++|+|++. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 358999999999853 68999999999999999999999999999999999999999887521 356
Q ss_pred cEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 228 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 228 ~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
+||||+|+| ++|..||.|.|.||.. .+. +++..+++.+++.+..+..| .+||||||||||
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRva 148 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVA 148 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHH
Confidence 799999999 6789999999999843 222 45667888999988876665 489999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||.+|+.+|+++|||||||+||+..++.+.+.+.+.... |+|+|++|||++++.. |||+++|++|+++.+|++.++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999988877665 7899999999999876 89999999999999999988876
Q ss_pred cc
Q 001055 377 NG 378 (1171)
Q Consensus 377 ~~ 378 (1171)
+.
T Consensus 229 ~~ 230 (235)
T COG1122 229 DA 230 (235)
T ss_pred hh
Confidence 53
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=367.32 Aligned_cols=218 Identities=25% Similarity=0.459 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCCc--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 49999999999743 69999999999999999999999999999999999865 7899999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++..++.. ++....+....+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 11 12233333332211 1123445667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
...
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 653
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=362.85 Aligned_cols=211 Identities=27% Similarity=0.440 Sum_probs=178.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-HhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 865 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999998776554 366799
Q ss_pred EEcCCcccccc-cHHhhccCCCC-C--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE-H--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~-~--~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|.. |+++|+.+... . ...+. ..+.++.+ .++....+....+||||||||++|||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999964211 1 11111 11222221 1233445666778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
|++|||||||++||+.++..+++.|.+..+ ++|+|++||+++++.. ||+|+++++|++++.|+++++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999998764 6899999999999987 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=365.09 Aligned_cols=218 Identities=24% Similarity=0.399 Sum_probs=181.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CC---CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--EL---ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p---~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 38999999999743 6999999999999999999999999999999999995 46 499999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|+.|+++|+.+.. .. .. +++.++++.+++.+. +.+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------VKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-------HHHHHhcCcccCCHHHHH
Confidence 5678899999999999899999996421 11 11 122333333333221 223456677889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+.+
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=339.13 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=175.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC-----cc-------------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-----AS------------- 222 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g-----~~------------- 222 (1171)
+.++++|+++.|. ++.+|+|||++|++++++|++|||||||||||+++....+...| .+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999997 46799999999999999999999999999999999998876542 11
Q ss_pred -ceecCcEEEEecCCCCCcccHHHHHhcCCCC---C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 223 -AVIRGTVAYVPQVSWIFNATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 223 -~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
..+|++||+|+|.|.-|+.||+|||.+|... . ++.++..++.+.|++.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 2256789999999999999999999998421 1 2446667777777766542 23456678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhc-CEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~-d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+-+|+|||||||||+|||.+...|.+.+..++ +.-|+|+|||.+....++ |++..+..|++++.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999988655544 678999999999998875 9999999999999999998
Q ss_pred Hhhcc
Q 001055 374 LSNNG 378 (1171)
Q Consensus 374 l~~~~ 378 (1171)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87664
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=375.10 Aligned_cols=227 Identities=26% Similarity=0.387 Sum_probs=185.3
Q ss_pred cEEEEeeEEEeCCC--------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 786 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
.|+++|+++.|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 38999999999631 2369999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhheEEEcCCcc--cccc-cHHhhccC----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCCh
Q 001055 858 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSV 926 (1171)
Q Consensus 858 ~---~~r~~i~~v~Q~~~--lf~~-tv~~nl~~----~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSg 926 (1171)
. .+|++|+||||+|. ++.. |+.+|+.. .......+. ...+.++++.+ |++ ...+..+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 4 45778999999983 5543 88887742 111122111 11223344442 333 234556778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||++|||||+.+|++||+||||++||+.+...+++.|+++.+ +.|+|+||||++.+.. ||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998753 7899999999999987 9999999999999999
Q ss_pred ChhHHhhcCCChHHHH
Q 001055 1004 TPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 1004 ~~~el~~~~~~~~~~~ 1019 (1171)
+++++.++....|.+.
T Consensus 238 ~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 238 TKEQIFNNPRHPYTQA 253 (327)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 9999998765556543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=369.79 Aligned_cols=203 Identities=31% Similarity=0.445 Sum_probs=179.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|++. .+++++||+|++||+++|+|||||||||||++|+|+.+|++|.+.. ..+.||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999742 2999999999999999999999999999999999999999987643 2246999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|+..|| ..||+|||.|+... .+.++.++.+..++.+.++..|. +|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHHH
Confidence 99999997 67999999998432 14577888999999999998884 8999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+++|+++|||||+|+||+..+..+...+.+..+ -|.|+|+||||..++.. +|||.+|++|+|.+.|++.++..++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999998888777544 48999999999988764 7999999999999999999987653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=359.34 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=172.9
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
++++||+++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 36999999999999999999999999999999999999999999999999998776544 33
Q ss_pred -hheEEEcCCccccc-ccHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 862 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 862 -~~i~~v~Q~~~lf~-~tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+.++|+||++.+|. .|+++|+.+. ......+.. ..+.++++. .|++...+....+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEK--VGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999998885 4999999642 111111111 112344444 35555566667889999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEE
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 1000 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~ 1000 (1171)
||+.+|+||||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 378999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=370.74 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=182.2
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 859 (1171)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 3699999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+|+.|+|+||++ .+|..|+++|+.+.. .....+..+ .+.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 577789999996421 112222211 12334444 2554 2456677889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 7899999999999876 99999999999999999999865
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=376.15 Aligned_cols=207 Identities=26% Similarity=0.449 Sum_probs=174.9
Q ss_pred EeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc
Q 001055 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 874 (1171)
Q Consensus 795 ~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 874 (1171)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+..+|+.+||+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5653 369999999999999999999999999999999999999999999999999876 4456788899999999988
Q ss_pred cc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecC
Q 001055 875 SG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950 (1171)
Q Consensus 875 ~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEp 950 (1171)
.. |+++|+.++.. ....+.. ..+.++++.+ |+....+....+|||||||||+|||||+++|++||||||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 65 99999975321 1111111 1123444443 454555666778999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 951 TAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 951 Ts~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+|||+.+.+.+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999875 47899999999999987 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=367.91 Aligned_cols=212 Identities=23% Similarity=0.381 Sum_probs=182.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. .+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 7 RLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred EEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 59999999999753 6999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCccccc-ccHHhhccCCC-C-------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFS-E-------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~-~-------~~~---~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
|+||++.+|. .|+++|+.+.. . ..+ +.+.++++.. |++...+....+||||||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHHHH
Confidence 9999998875 59999986431 1 011 1223333333 4444455667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999999877 99999999999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=364.72 Aligned_cols=219 Identities=28% Similarity=0.414 Sum_probs=181.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 38999999999753 69999999999999999999999999999999999997 479999999999854 2334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+... . .. .++.++++..++.+ ......+....+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHHH
Confidence 56788999999999998899999964211 1 11 12222333322211 0112345566789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14251 235 IAPK 238 (251)
T ss_pred hCCC
Confidence 5443
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=363.08 Aligned_cols=220 Identities=21% Similarity=0.377 Sum_probs=183.0
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEecCCC--Ch
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p---~~G~I~i~g~~i~~~--~~ 857 (1171)
+.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCCe--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 459999999999743 69999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhhheEEEcCCccccc-ccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 858 MDLRKILGIIPQSPVLFS-GTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
..+|+.++|+||++.+|. .|+++|+.+.. . ... +.+.++++..++...+ ....+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHHH
Confidence 467888999999999887 59999996421 1 111 2233334443332222 123345677899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999876 99999999999999999999
Q ss_pred HhhcCC
Q 001055 1008 LLSNEG 1013 (1171)
Q Consensus 1008 l~~~~~ 1013 (1171)
+...+.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14256 234 IFTTPE 239 (252)
T ss_pred HHhCCC
Confidence 876543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=363.90 Aligned_cols=218 Identities=21% Similarity=0.400 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 48999999999753 69999999999999999999999999999999999986 479999999998853 3455
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
.+|+.++|+||++.+|..|+.+|+.+... .. ++++.++++.+++.+.+. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 67888999999999888899999975321 11 123344445555443332 234556778999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe---------CcEEEEe
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1002 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 1002 (1171)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777899999999999877 99999998 8999999
Q ss_pred cChhHHhhcC
Q 001055 1003 DTPEELLSNE 1012 (1171)
Q Consensus 1003 g~~~el~~~~ 1012 (1171)
|+++++.+.+
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=360.92 Aligned_cols=211 Identities=25% Similarity=0.406 Sum_probs=173.5
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHh
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r 861 (1171)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999987663 4677
Q ss_pred hheEEEcCCc--ccc-cccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSP--VLF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~--~lf-~~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+.++|+||++ .++ ..|+++|+.+. ....+++..+. ...+.++.+ ++. ...+....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE----AVLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHH----HHHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8899999999 344 46999998532 11111111110 012334443 453 4556777889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998764 7899999999999986 9999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=368.61 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.++++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999742 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCcc--cccccHHhhccCCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 865 GIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 865 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+|+||++. ++..|+.+|+.+.. ...+++ +.++++.++ +....+.....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-----------MLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 56779999996421 122222 233334333 43444455678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999978999999999999999999998754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=369.02 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCC----CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHH
Q 001055 786 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~----~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~ 860 (1171)
.++++|++++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 236999999999999999999999999999999999999999999999999987543 3557
Q ss_pred hhheEEEcCCcc--cccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 861 RKILGIIPQSPV--LFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 861 r~~i~~v~Q~~~--lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
|+.+||+||+|. ++..|+.+|+.+... ... +.+.++++.++ +....+....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG-----------MYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHH
Confidence 889999999984 666689999965321 122 22344444444 4444445557899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999998789999999999999999999987
Q ss_pred hc
Q 001055 1010 SN 1011 (1171)
Q Consensus 1010 ~~ 1011 (1171)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=365.13 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=180.7
Q ss_pred EEEEeeEEEeCCC-------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 787 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~-------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998766543
Q ss_pred ---HhhheEEEcCCcc--ccc-ccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001055 860 ---LRKILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 928 (1171)
Q Consensus 860 ---~r~~i~~v~Q~~~--lf~-~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGq 928 (1171)
+|+.|+|+||++. ++. .|+++|+.+. ......+ ....+.++++.+ |++ ...+..+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5678999999983 443 5999998521 1111111 111233444443 553 34566678899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 7899999999999986 999999999999999999
Q ss_pred hHHhhc
Q 001055 1006 EELLSN 1011 (1171)
Q Consensus 1006 ~el~~~ 1011 (1171)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.02 Aligned_cols=218 Identities=24% Similarity=0.430 Sum_probs=184.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999964 379999999999999999999999999999999999997 589999999999864 2345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.|+|+||++.+|..|+++|+.+.. .. .+ +.+.++++..++.+.+ +...+..+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 6788899999999999889999997521 11 11 2233344444432222 23456677899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|++|||||||++||+.+...+.+.|+++..+.|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998767999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+.+
T Consensus 251 ~~~ 253 (267)
T PRK14237 251 TNP 253 (267)
T ss_pred cCC
Confidence 543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=362.34 Aligned_cols=203 Identities=29% Similarity=0.408 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 49999999999753 6999999999999999999999999999999999999999999999998763 4677899
Q ss_pred EEcCCccccc-ccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+||++.+|. .|+++|+.+... ..++++.++++.. |+....+....+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 599999975321 1123344444443 44444555667899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1006 (1171)
+|||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999876 9999999999999988764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=361.48 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=181.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC------CChHHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 860 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 7899999999753 69999999999999999999999999999999999999999999999998731 123456
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
|+.++|+||++.+|.. |+.+|+.... .....+.. ..+.++++.+ |++...+....+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 7889999999998865 9999986311 11111111 1234445443 566666677789999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999998754 7999999999999976 99999999999999999988753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=374.13 Aligned_cols=225 Identities=20% Similarity=0.379 Sum_probs=182.4
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEecCCCChHHH
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
++++||++.|+... .++|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++...+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 89999999996532 259999999999999999999999999999999999998 489999999999988877665
Q ss_pred hh----heEEEcCCcc--ccc-ccHHhhcc----CCCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001055 861 RK----ILGIIPQSPV--LFS-GTVRFNLD----PFSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925 (1171)
Q Consensus 861 r~----~i~~v~Q~~~--lf~-~tv~~nl~----~~~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LS 925 (1171)
++ .|+||||++. ++. .|+.+++. ....... +.+.+.++..++.+. ....+..+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999984 443 36665542 2211111 223334444333210 123456678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEe
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
|||||||+|||||+.+|+|||+||||++||+.++..+++.|+++.+ +.|+|+||||++.+.. ||||++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 001055 1003 DTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 1003 g~~~el~~~~~~~~~~~ 1019 (1171)
|+++++.+++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999997765556543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=361.39 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++|++++|++ +++|+|+||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999974 36999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC----CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+... ... +.+.++++..++.+. +....+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence 67888999999999998899999974321 111 122233333333222 233456677899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999887 8999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.07 Aligned_cols=218 Identities=24% Similarity=0.386 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCC--hH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 858 (1171)
.++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999974 3699999999999999999999999999999999999885 7999999999986532 34
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
..++.++|+||++.+|..|+++|+.+... . .. +++.++++.+++.+ ++....+.....|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHHH
Confidence 56788999999999998999999974321 1 11 12333444433321 1223445667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998767999999999999877 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
...
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=363.16 Aligned_cols=218 Identities=26% Similarity=0.430 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999974 3699999999999999999999999999999999999984 899999999988653 234
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. ...+ +.+.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5678899999999999899999997421 1111 1233334443332211 23356677889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+++.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999998777999999999998776 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 643
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=357.87 Aligned_cols=200 Identities=26% Similarity=0.398 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 863 (1171)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999999876543 36778
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..++. ........+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-----------HKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 111 12334444444443 333444568999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
|||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++++.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999875 47999999999999987 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=364.86 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=181.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCCC--hHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~~--~~~ 859 (1171)
-+++||+++|++ +++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
+|+.++|+||++.+|..|+.+|+.+.. .. . ++++.++++..++.+. +.+..+..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHHH
Confidence 688899999999999889999986421 11 1 1122333343333221 112345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999876 9999999999999999999998
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=365.38 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 59999999999753 69999999999999999999999999999999999997 699999999999853 3445
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CCCHH-H----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA-D----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~-~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. ...+. . +.++++..++. .++....+..+..|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHHH
Confidence 6788899999999999889999996421 11111 1 12222222111 13334456677899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
..+
T Consensus 255 ~~~ 257 (271)
T PRK14238 255 SNP 257 (271)
T ss_pred cCC
Confidence 654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=367.66 Aligned_cols=216 Identities=25% Similarity=0.434 Sum_probs=178.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~i 864 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 2 l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 7899999999743 6999999999999999999999999999999999999999999999999985 22345677889
Q ss_pred EEEcCCcc--cccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++. ++..|+.+|+.+.. .....+..+ .+.+.++.+ |++...+....+||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 99999985 56668999986421 112222111 122233332 3444445566789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999875 47899999999999976 999999999999999999988653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=371.06 Aligned_cols=219 Identities=21% Similarity=0.385 Sum_probs=181.3
Q ss_pred ccEEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----C-C
Q 001055 785 GSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F-G 856 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----~-~ 856 (1171)
+.|+++|++++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999997532 259999999999999999999999999999999999999999999999998852 1 3
Q ss_pred hHHHhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001055 857 LMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkq 930 (1171)
...+|+.|+|+||++ .+|..|+++|+.+.. .....+..+ .+.+.++.+ ++. ...+....+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK-----KVPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456778899999998 466779999996421 112222211 122333332 442 3456667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|++|||||+.+|++|||||||++||+.+.+.+++.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999876 99999999999999999998
Q ss_pred Hhh
Q 001055 1008 LLS 1010 (1171)
Q Consensus 1008 l~~ 1010 (1171)
+..
T Consensus 238 ~~~ 240 (289)
T PRK13645 238 IFS 240 (289)
T ss_pred Hhc
Confidence 865
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=365.59 Aligned_cols=219 Identities=24% Similarity=0.447 Sum_probs=183.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCcc-cc-cccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV-LF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~-lf-~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++. +| ..|+++|+.+... ....+..+ .+.+.++. .|+....+....+||||||||++||||++.
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQ--VDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHH--cCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999984 44 5589999864311 11111111 12222332 234444555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998753 7899999999999878999999999999999999998653
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=362.09 Aligned_cols=218 Identities=24% Similarity=0.407 Sum_probs=183.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 48999999999643 699999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCCC----CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEH----SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~----~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
..++.++|+||++.+|..|+++|+.+.... .. ..+.++++.+++.+ ++.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 667889999999999988999999753211 11 12233333333221 2234456677889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999999976 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
..+
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 644
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=356.72 Aligned_cols=197 Identities=34% Similarity=0.499 Sum_probs=164.6
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|+
T Consensus 1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 367999999653 6999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cCCccc---ccccHHhhccCCCCC--------C---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 868 PQSPVL---FSGTVRFNLDPFSEH--------S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 868 ~Q~~~l---f~~tv~~nl~~~~~~--------~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
||++.+ +..|+++|+.+.... . ++++.++++.. |++........+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-----------GLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHH
Confidence 999876 457999998642210 1 12233333333 4444445566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999875 57899999999999977 9999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=355.98 Aligned_cols=201 Identities=25% Similarity=0.366 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 863 (1171)
++++|++++|++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 3699999999999999999999999999999999999999999999999999776543 46778
Q ss_pred eEEEcCCcccccc-cHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|.. |+++|+.+.. .... +++.++++.. |++...+....+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV-----------GLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhcCHHHHHHHHHH
Confidence 9999999998875 9999996431 1111 1233333333 444444555678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 47999999999999987 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=360.36 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecC-CCChHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~-~~~~~~ 859 (1171)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3899999999974 3699999999999999999999999999999999999986 5999999999985 345567
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+|+.++|+||++.+|..|+.+|+.+.. .. .+ +++.++++..++.+ .+....+....+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHHH
Confidence 788999999999999889999996421 11 11 12223333333322 12234556677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999887 99999999999999999998865
Q ss_pred c
Q 001055 1011 N 1011 (1171)
Q Consensus 1011 ~ 1011 (1171)
.
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=341.54 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=160.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
++|++.+|..|+++|+ ||||||||++|||||+.+|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999887 99999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
|||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998754 7899999999999877999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=360.52 Aligned_cols=210 Identities=24% Similarity=0.363 Sum_probs=187.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|+++|+++. . +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .|
T Consensus 38 ~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 45999999995 2 3699999999999999999999999999999999999999999999997 39
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+|+||++.+|+.|+++|+.+.....+..+.+.++.+++.+.+..+|.+.++.+++.+.+||||||||++|||||+.+|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999976433334455666777888888999998888888888889999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHH-HHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+...+.+.+ +....++|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999998754 555567999999999999877999999999999999999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=362.75 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=184.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECCE--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 48999999999643 69999999999999999999999999999999999999999999999999987766554 4469
Q ss_pred EEEcCCcccccc-cHHhhccCCCC----------CCH-HHHH--HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE----------HSD-ADLW--EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~----------~~~-~~i~--~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
+|+||++.+|.. |+++|+.+... ..+ .... .......+.++++.+ |++...+....+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999875 99999974210 000 0000 000111234455553 6666777788899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999998753 6899999999999977 99999999999999999988
Q ss_pred Hhh
Q 001055 1008 LLS 1010 (1171)
Q Consensus 1008 l~~ 1010 (1171)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=364.09 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=183.7
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 857 (1171)
+.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 359999999999653 699999999999999999999999999999999999884 89999999999864 334
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
..+|+.++|+||++.+|..|+++|+.+.. .. .. +.+.++++.+++.+.+ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 11 11 2233344443332221 2345566788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+++|+||||||||++||+.+...+++.|+++.+++|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999998
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
.+.
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=363.46 Aligned_cols=220 Identities=25% Similarity=0.370 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999988877777888999
Q ss_pred EcCCcccc-cccHHhhccCCCCCCHHHH--HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~~~~~~i--~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+||++.++ ..|+++|+.+......... ........+.+.++.+ |+.........+||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99998644 5699999965311000000 0000011233444443 44445566677899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998754 6899999999999966 99999999999999999988753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=352.46 Aligned_cols=203 Identities=31% Similarity=0.457 Sum_probs=176.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
+|.++|+++.|+. .++++||||+|+.||.+++.|||||||||||++|+|++.|+.|.+.. ..++
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 5889999999974 57999999999999999999999999999999999999999986532 1236
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC---------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
||+|+|+..+| ..||.+||.||... ...++.+.++.|+|...-+..| ..||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999987 78999999999521 1245556678888887777776 489999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|++||||||+++||++.+..+-..|.+...+ |.|+|+||||.++.- .+|||++|++|+|...|+++++..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999888877765444 899999999999875 579999999999999999999876
Q ss_pred cc
Q 001055 377 NG 378 (1171)
Q Consensus 377 ~~ 378 (1171)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 53
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=352.30 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999643 2 39999999999999999999999999999999999999999999999876553 3578999
Q ss_pred EcCCcccccc-cHHhhccCCCC--C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE--H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~--~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+++|+.+... . .++++.++++..++. ...+....+||||||||++|||||
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-----------GLEKRLPGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-----------HHHhCCcccCCHHHHHHHHHHHHH
Confidence 9999998875 99999974321 1 122344444444443 334445568999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+...+++.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999999977 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=349.35 Aligned_cols=222 Identities=30% Similarity=0.418 Sum_probs=191.2
Q ss_pred cEEEEeeEEEeCCCC----------------------CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 001055 786 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~----------------------~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G 843 (1171)
.|+++||++-|+.+. ...++|+||+|+.||+..|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 489999999886431 1258999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHH----hhheEEEcCCcccccc-cHHhhccCCCCC---C----HHHHHHHHHHhcHHHHHHHccC
Q 001055 844 RILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSL 911 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~---~----~~~i~~~l~~~~~~~~i~~lp~ 911 (1171)
+|.++|.|+..++..++ |+++++|+|...|++. ||.+|..+.-+. . .+...+.++.+|+.+|-.+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~--- 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK--- 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc---
Confidence 99999999999998876 3469999999999976 999999865331 2 2234555566655555544
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-c
Q 001055 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 988 (1171)
Q Consensus 912 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~ 988 (1171)
.+.+||||+||||.|||||..+|+|||+|||+|+|||--+..+++-|.++.. .+||++||||++++.+ -
T Consensus 161 --------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 161 --------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred --------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4468999999999999999999999999999999999999999999988653 6999999999999877 9
Q ss_pred CEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 989 DRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 989 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
|||.+|++|+|+..|||+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999888766653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.32 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 7 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECCe--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 49999999999753 699999999999999999999999999999999999985 48999999998854 3345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. ...+ +.+.++++.+++.+.+ ....+..+..|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6778899999999999899999996421 1111 2234444544443322 22345567789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe-----CcEEEEecC
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 1004 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-----~G~i~~~g~ 1004 (1171)
|++|||||+++|++|||||||++||+.+...+++.|++..+++|||++||+++++.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999998777999999999999987 99999998 599999999
Q ss_pred hhHHhhcCC
Q 001055 1005 PEELLSNEG 1013 (1171)
Q Consensus 1005 ~~el~~~~~ 1013 (1171)
++++.+.+.
T Consensus 238 ~~~~~~~~~ 246 (259)
T PRK14260 238 TTQIFSNPL 246 (259)
T ss_pred HHHHhcCCC
Confidence 999976543
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=355.53 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 863 (1171)
|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 36999999999999999999999999999999999999999999999999998765443 5788
Q ss_pred eEEEcCCcccc-cccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 864 LGIIPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 864 i~~v~Q~~~lf-~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++|+||++.++ ..|+++|+.+.. ....++..+. +.++++. .|+....+....+||||||||++|||||+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDK--VGLLDKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHH--cCChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence 99999999875 569999997521 1222222111 1223333 23444445566789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. ||+|++|++|+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999875 46899999999999987 99999999999864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=344.31 Aligned_cols=193 Identities=28% Similarity=0.443 Sum_probs=161.4
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
++++|+++.|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997432 247999999999999999999999999999999999999998876432 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcC----CCCC---HHHHHHHHHHcCchHHHh-cCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFG----SAFE---PARYEKAIDVTSLQHDLD-LLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~---~~~~~~~~~~~~l~~~~~-~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..||||+|+..|. ..||.|||.+. .... ..+....++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 34699999999885 78999999853 2111 234445556666665544 334 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVK 366 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 366 (1171)
|||||||+.+|++++.||||.+||.++.+.+++.+....++ |+|+|+||||......|||++.+.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999988776544 89999999999999999999999999843
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=356.00 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
.++++|++++|++.. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999997532 25999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhheEEEcCCcccccc-cHHhhccCC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 861 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 861 -r~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
++.++|+||++.+|.. |+.+|+.+. ..... +++.++++.. |+..........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL-----------GLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCChhhCCHHHHHH
Confidence 3579999999998875 999998642 11111 2233334433 34444445557899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 7899999999999877999999999999764
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=354.06 Aligned_cols=204 Identities=25% Similarity=0.476 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 4789999999643 69999999999999999999999999999999999999999999999988743 45778999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|.. |+++|+.+... ....+. ...+.++++.+ |++........+||||||||++|||||+.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 99999864311 111111 11234445443 5555566667789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999875 46899999999999876 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=355.90 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=178.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 49999999999743 6999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCcccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|..|+++|+.+.. .....+ ..+.++++.+ |+. +..+....+|||||||||+|||||+.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999889999996421 111110 1123344443 443 345667789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEe-CcEEEEecChh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 1006 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~-~G~i~~~g~~~ 1006 (1171)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998753 789999999999998899999995 66677778775
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=361.87 Aligned_cols=218 Identities=26% Similarity=0.446 Sum_probs=181.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 38999999999753 699999999999999999999999999999999999974 69999999999853 3445
Q ss_pred HHhhheEEEcCCccccc-ccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 859 DLRKILGIIPQSPVLFS-GTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
.+|+.++|+||++.+|. .|+++|+.+.. . ... +.+.++++..++.+. +....+....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 67888999999999886 49999986321 1 111 122333333333211 12345566788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe------CcEEEEe
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 1002 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~------~G~i~~~ 1002 (1171)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++++.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999988667999999999999876 99999997 7999999
Q ss_pred cChhHHhhcC
Q 001055 1003 DTPEELLSNE 1012 (1171)
Q Consensus 1003 g~~~el~~~~ 1012 (1171)
|+++++....
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=354.35 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=176.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999642 239999999999999999999999999999999999999999999999876543 3567999
Q ss_pred EcCCcccccc-cHHhhccCCC-CC---C---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS-EH---S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~-~~---~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+.+|+.+.. .. . ++++.++++..++ +...+.....||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----------EDLLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----------HHHHhCCcccCCHHHHHHHHHHHHH
Confidence 9999998875 9999997421 11 1 2234444444444 4444555568999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998753 7899999999999877 999999999999999999998753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=369.87 Aligned_cols=204 Identities=33% Similarity=0.478 Sum_probs=179.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.++++|++++|+ +..+++|+||+|++||+++|+|||||||||||++|+|+..|++|.+.. .++.||
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 468999999999999999999999999999999999999999986532 234699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC----CC-H---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA----FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~----~~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
+|+|+-.|| ..||+|||.||.. .. . +++.++++..++.+..+..| .+|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 999999998 6899999999954 12 2 36777888888888777666 489999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||+.+|+|||||||+|+||.+-+..+-..+++..+ .|.|.|+||||.++.- .+|||++|++|+|...|+++++...+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999888777543 4999999999998854 57999999999999999999997654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=359.07 Aligned_cols=219 Identities=24% Similarity=0.402 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 860 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 48999999999753 69999999999999999999999999999999999999999999999998 776665442
Q ss_pred ----hhheEEEcCCcc--ccc-ccHHhhccC----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001055 861 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 928 (1171)
Q Consensus 861 ----r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGq 928 (1171)
++.++|+||++. ++. .|+.+|+.. +......+.. ..+.++++.+ +++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 457999999984 333 478887742 1111111111 1245666665 343 45677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|+||||||||++||+.+.+.+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999986 999999999999999999
Q ss_pred hHHhhcCC
Q 001055 1006 EELLSNEG 1013 (1171)
Q Consensus 1006 ~el~~~~~ 1013 (1171)
+++..++.
T Consensus 237 ~~~~~~~~ 244 (258)
T PRK11701 237 DQVLDDPQ 244 (258)
T ss_pred HHHhcCCC
Confidence 99876543
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=366.49 Aligned_cols=219 Identities=25% Similarity=0.353 Sum_probs=182.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 39 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 58999999999653 69999999999999999999999999999999999864 4999999999988643 233
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++..++.+ ++....+.....|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHHH
Confidence 5678899999999999889999997421 11 11 12233333333221 1223345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++..++|||++||+++++.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 270 ~~~~ 273 (286)
T PRK14275 270 TNPK 273 (286)
T ss_pred hCCC
Confidence 6543
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=352.42 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=184.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHHhhh
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 863 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 863 (1171)
.+.|+.|+|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 469999999999999999999999999999999999999999999999998865442 235677
Q ss_pred eEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
++|+||++.+|+.|+++|+.+.....+++..++++..++.+.+..+|.++++..+....+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654444555677788888888888889999988888888999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHH--HHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 944 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~--~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
+|||||||++||+.+...+++ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999887 455443 3689999999999987899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=434.21 Aligned_cols=225 Identities=25% Similarity=0.380 Sum_probs=192.8
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..|+++||+++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3599999999996333479999999999999999999999999999999999999999999999999965 456678899
Q ss_pred EEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|||||++.+|.. ||+|||.++.. ....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~--vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLED--TGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998865 99999975421 1222211 123344444 356666677778999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+|+||||||||+|||+.+++.+++.|++..+++|||++||++++++. ||||++|++|++++.|++++|.++.+..|.
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~ 1156 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFY 1156 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEE
Confidence 99999999999999999999999999998778999999999999987 999999999999999999999887665554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=363.24 Aligned_cols=219 Identities=26% Similarity=0.434 Sum_probs=182.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--Ch
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~ 857 (1171)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 38 ~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 358999999999753 69999999999999999999999999999999999997 6899999999998643 34
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC---CCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
..+++.++|+||++.+|..|+.+|+.+.. ... ++++.++++..++... +....+....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE-------VKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch-------hHHHHhCCcccCCHHHHHH
Confidence 56788999999999988889999996421 111 2233334444333211 1233456677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEE-EEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~-vl~~G~i~~~g~~~el~ 1009 (1171)
|+|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999887 99976 56999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 543
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=364.67 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=180.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 864 (1171)
++++||+++|++. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999643 369999999999999999999999999999999999999999999999999853 2234578889
Q ss_pred EEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++ .+|..|+.+|+.+.. .....+..+ .+.+.++. .|++...+....+|||||+||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--CCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999997 467789999996421 112211111 12233333 24444455566789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998754 7899999999999876 999999999999999999998753
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=375.90 Aligned_cols=209 Identities=24% Similarity=0.366 Sum_probs=172.7
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE----ecCCCChHHH---h-hheEEEcCCccc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDL---R-KILGIIPQSPVL 873 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~---r-~~i~~v~Q~~~l 873 (1171)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 5666655544 3 579999999999
Q ss_pred cc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001055 874 FS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949 (1171)
Q Consensus 874 f~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 949 (1171)
|+ .|+++|+.+.. .....+.. ..+.++++. .|++...+....+||||||||++|||||+.+|+||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~--vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLEL--VGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 97 59999997431 11221111 112233333 244444555667899999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 950 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 950 pTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
||++||+.++..+++.|.++.+ ++|+|+||||++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 9999999999999999998754 7999999999999866 999999999999999999999876544444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=361.38 Aligned_cols=218 Identities=23% Similarity=0.404 Sum_probs=183.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 20 ~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 59999999999753 699999999999999999999999999999999999864 589999999998642 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
.+|+.|+|+||++.+|..|+.+|+.+... . .++.+.++++.+++.+.+ ....+..+..||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHHH
Confidence 56789999999999998899999965321 1 122233444444443322 2234556678999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe---------CcEEEEe
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1002 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 1002 (1171)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777999999999999977 99999997 8999999
Q ss_pred cChhHHhhcC
Q 001055 1003 DTPEELLSNE 1012 (1171)
Q Consensus 1003 g~~~el~~~~ 1012 (1171)
|+++++...+
T Consensus 251 g~~~~~~~~~ 260 (274)
T PRK14265 251 SPTEQMFGSP 260 (274)
T ss_pred CCHHHHHhCC
Confidence 9999997654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=353.92 Aligned_cols=204 Identities=26% Similarity=0.441 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 864 (1171)
++++||+++|++. ++++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4689999999753 69999999999999999999999999999999999999999999999998853 3445678889
Q ss_pred EEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++.+|. .|+++|+.+.. ....++.. ..+.+.++.+ |++...+....+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999886 59999996531 11221111 1123344442 5555566677889999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998754 7899999999999977 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=354.04 Aligned_cols=220 Identities=30% Similarity=0.491 Sum_probs=189.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|+++.|+. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 478999999963 2357999999999999999999999999999999999999999886432 134599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++++++.||.||+.++.. .....+...++..++.+.++.++.+..+..+..+.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988899999988643 233445556666778888888877777777788899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 384 (1171)
+||||||++||+.+++.+.+.+.+.. +|+|+|++||+++++..||++++|++|++++.|+++++.+..+.|..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 99999999999999999999877664 489999999999999889999999999999999999887766555543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=361.02 Aligned_cols=220 Identities=22% Similarity=0.344 Sum_probs=184.9
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC----
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK---- 854 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~---- 854 (1171)
.+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4569999999999753 699999999999999999999999999999999999985 79999999987742
Q ss_pred CChHHHhhheEEEcCCcccccccHHhhccCCC---CC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001055 855 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926 (1171)
Q Consensus 855 ~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg 926 (1171)
.....+++.++|+||++.+|..|+++|+.+.. .. .++.+.++++.+++.+ ++.+..+....+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence 23456788899999999999889999996421 11 1233444444443322 233445666788999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++..++|+|+|||+++++.. ||++++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999976 999999999999999999
Q ss_pred hHHhhcC
Q 001055 1006 EELLSNE 1012 (1171)
Q Consensus 1006 ~el~~~~ 1012 (1171)
+++....
T Consensus 245 ~~~~~~~ 251 (265)
T PRK14252 245 DTIFIKP 251 (265)
T ss_pred HHHHhCC
Confidence 9987543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=355.38 Aligned_cols=214 Identities=25% Similarity=0.446 Sum_probs=180.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999876542 4678999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|.+ |+++|+.+... ...... ...+.+.++.+ ++....+....+|||||+||++|||||+++|
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999975 99999964221 111111 11234445553 3344455566789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++||||||++||+.+++.+++.|.+... ++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998654 6899999999999877 999999999999999999999754
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=360.08 Aligned_cols=220 Identities=26% Similarity=0.405 Sum_probs=183.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCC-hHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~-~~~ 859 (1171)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 48999999999753 699999999999999999999999999999999999986 6999999999987653 345
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---C-CCHHHHHHHHHHhcHHHHHHHc--cCCcchhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSDADLWEALERAHLKDAIRRN--SLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~~~i~~~l~~~~~~~~i~~l--p~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
+++.++|+||++.+|..|+++|+.+.. . .+..+..+. +.+.++.+ ...+.+.....+.+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV-----AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999899999997421 1 122222211 12222222 111123455667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|||+|||+++.+.. |||+++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999988667999999999999877 9999999999999999999997653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=368.14 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=184.4
Q ss_pred cEEEEeeEEEeCC--CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~--~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~ 860 (1171)
.++++|+++.|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2236999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hheEEEcCCc--cccc-ccHHhhcc----CCCCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001055 861 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925 (1171)
Q Consensus 861 r----~~i~~v~Q~~--~lf~-~tv~~nl~----~~~~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LS 925 (1171)
+ +.|+||||++ .++. .|+.+|+. .+...+..+ +.+.++.+++ +.+ ...++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcCCcccCC
Confidence 3 4799999998 4554 37777663 222222222 2222222222 211 123466778999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEe
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||+||.+|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 001055 1003 DTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 1003 g~~~el~~~~~~~~~~~ 1019 (1171)
|+++++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766666653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=356.66 Aligned_cols=210 Identities=27% Similarity=0.407 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 69999999999999999999999999999999999999999999999999876553 3678999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.+ |+++|+.+.. ... +.++.++++.. |++........+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-----------QLEGYANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986321 111 12233333333 444445555678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++|++|||||||++||+.+.+.+++.|+++.+ ++|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998753 7999999999999876 999999999999999999888754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=358.22 Aligned_cols=219 Identities=23% Similarity=0.408 Sum_probs=185.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~~ 859 (1171)
++++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +...
T Consensus 4 l~~~~v~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 7899999999743 69999999999999999999999999999999999875 4899999999998653 3456
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+++.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++.+++.+.+. ...+..+.+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHHH
Confidence 788999999999999889999997421 11 11 22344455555544332 23456677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||+++|+||||||||++||+.+...+.+.|++...++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999887 99999999999999999999976
Q ss_pred cCCC
Q 001055 1011 NEGS 1014 (1171)
Q Consensus 1011 ~~~~ 1014 (1171)
.+..
T Consensus 235 ~~~~ 238 (250)
T PRK14266 235 NPKD 238 (250)
T ss_pred CCCC
Confidence 5443
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=371.69 Aligned_cols=224 Identities=21% Similarity=0.359 Sum_probs=181.5
Q ss_pred EEEEeeEEEeCC--CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEecCCCChHHH
Q 001055 787 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~--~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
|+++|++++|+. +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|+++...+...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 899999999953 12359999999999999999999999999999999999986 589999999999988876654
Q ss_pred h----hheEEEcCCcc--ccc-ccHHhhccCC------CC--C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcC
Q 001055 861 R----KILGIIPQSPV--LFS-GTVRFNLDPF------SE--H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA 920 (1171)
Q Consensus 861 r----~~i~~v~Q~~~--lf~-~tv~~nl~~~------~~--~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~ 920 (1171)
+ +.|+||||++. ++. .||.+|+... .. . . .+.+.+.++..++.+. .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhCC
Confidence 3 46999999996 333 3888887421 00 0 0 1123333333333210 1234556
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCc
Q 001055 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSG 997 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G 997 (1171)
..+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998764 7899999999999977 9999999999
Q ss_pred EEEEecChhHHhhcCCChHHH
Q 001055 998 RVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 998 ~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+|++.|+++++.+++...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999998765555554
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=357.90 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=181.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECCE--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 38899999999743 6999999999999999999999999999999999999875 8999999999864 2344
Q ss_pred HHhhheEEEcCCcccccc-cHHhhccCCC---CC-CHHHHHHH----HHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 859 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~i~~~----l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
.+|+.++|+||++.+|.. |+.+|+.... .. .+++..+. ++..++.+ ++....+....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHHH
Confidence 678889999999998875 9999996321 11 22222221 22222211 122333456678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767999999999999987 999999999999999999999
Q ss_pred hhcCC
Q 001055 1009 LSNEG 1013 (1171)
Q Consensus 1009 ~~~~~ 1013 (1171)
+..+.
T Consensus 235 ~~~~~ 239 (252)
T PRK14272 235 FTNPR 239 (252)
T ss_pred HhCcC
Confidence 86543
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=361.35 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=178.3
Q ss_pred cEEEEeeEEEeCCC-------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 786 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999621 23699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhhheEEEcCCcc--cccc-cHHhhccCC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 859 DLRKILGIIPQSPV--LFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~--lf~~-tv~~nl~~~----~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
..++.++|+||++. ++.. |+.+|+.+. ..... +++.++++.+++. ....+....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 55678999999985 4443 888887531 11111 2233344443331 12234455689999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999987 99999999999999999
Q ss_pred hhHHhhcC
Q 001055 1005 PEELLSNE 1012 (1171)
Q Consensus 1005 ~~el~~~~ 1012 (1171)
++++...+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99998654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=337.75 Aligned_cols=202 Identities=26% Similarity=0.440 Sum_probs=172.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
..|+++|+++.||+ ++++|+||||+|++||+++|+|+|||||||||++|.|+.+|++|.+.. +
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 36999999999984 568999999999999999999999999999999999999999886432 3
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC------------CCHH---HHHHHHHHcCchHHHhcCCCCCccccCCCCCcc
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA------------FEPA---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~------------~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~L 289 (1171)
+..|||++|.+.|. ..||.+|++.|.- +.++ ....+++..++.+..- .+..+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~L 148 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTL 148 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccC
Confidence 45699999999996 7899999998742 1222 2334556666655432 233589
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEE
Q 001055 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKE 367 (1171)
Q Consensus 290 SGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~ 367 (1171)
||||+|||+|||||+++|+++|-|||+++|||.+.+.+++.+.+.. ..|.|+|+.-|+++... .||||+-|++|+|++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999888764 45899999999999976 589999999999999
Q ss_pred ecChhHHh
Q 001055 368 EGTFEDLS 375 (1171)
Q Consensus 368 ~g~~~~l~ 375 (1171)
+|+.+++.
T Consensus 229 Dg~~~el~ 236 (258)
T COG3638 229 DGPASELT 236 (258)
T ss_pred eCChhhhh
Confidence 99998853
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=326.69 Aligned_cols=194 Identities=25% Similarity=0.456 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 226 (1171)
+|+|+||++.|+.+ +++|+||||+|++||++.|+||||||||||+|+|.++..|+.|.+.. +|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999853 67999999999999999999999999999999999999999986532 45
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 227 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
++||+|+||.-|. ..||.||+.|... .. .+++..++++++|.+....+|. +||||+||||+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 6799999999875 7899999998632 11 2566778999999999998884 89999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhc-CEEEEEeCCEEEEe
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 368 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~-d~i~~l~~G~i~~~ 368 (1171)
||||++.+|++||-||||.+|||.....|++.+.+..+.|.|||+.|||.+.++.+ -|++.+++|+++..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999999999999997777788899999999999999987 89999999998864
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=358.38 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.+.++++++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 38999999999753 699999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
.+|+.++|+||++.+|..|+.+|+.+... . ..+.+.++++.+++.+.+. ...++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 56788999999999998899999974321 1 1234455555555433322 223456678999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe--------CcEEEEec
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 1003 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~--------~G~i~~~g 1003 (1171)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998777899999999999876 99999996 89999999
Q ss_pred ChhHHhhcC
Q 001055 1004 TPEELLSNE 1012 (1171)
Q Consensus 1004 ~~~el~~~~ 1012 (1171)
+++++.+..
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 999997653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=359.71 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=182.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--------CceEEECCEecCCCChH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~--------~G~I~i~g~~i~~~~~~ 858 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999653 6999999999999999999999999999999999999998 99999999999877777
Q ss_pred HHhhheEEEcCCcc-cccccHHhhccCCCC-C-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 859 DLRKILGIIPQSPV-LFSGTVRFNLDPFSE-H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~-lf~~tv~~nl~~~~~-~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
.+++.++|+||++. +|..|+++|+.+... . .............+.+.++. .|+++..+....+||||||||++||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL--AGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHH
Confidence 78888999999986 567799999964311 0 00000000001112333443 3566666777789999999999999
Q ss_pred HHhc---------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 936 RALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 936 rall---------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 59999999999999999999999999998753 6899999999999976 9999999999999999
Q ss_pred ChhHHhh
Q 001055 1004 TPEELLS 1010 (1171)
Q Consensus 1004 ~~~el~~ 1010 (1171)
+++++..
T Consensus 238 ~~~~~~~ 244 (272)
T PRK13547 238 APADVLT 244 (272)
T ss_pred CHHHHcC
Confidence 9988864
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=359.40 Aligned_cols=219 Identities=21% Similarity=0.355 Sum_probs=178.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEecCCC-----Ch
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 857 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~i~~~-----~~ 857 (1171)
.++++||+++|++. ++|+|+||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 38999999999743 6999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhhheEEEcCCcccccc-cHHhhccCCCC-CCH--H---HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 858 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-HSD--A---DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~-~~~--~---~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
..+++.++|+||++.+|.. |+.+|+.+... ..+ . ..........+.+.++.+ |++...+....+|||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHHH
Confidence 4567789999999988874 99999964211 000 0 000000011233444442 4544556667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999766 99999999999999999988
Q ss_pred H
Q 001055 1008 L 1008 (1171)
Q Consensus 1008 l 1008 (1171)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 6
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=357.14 Aligned_cols=215 Identities=22% Similarity=0.289 Sum_probs=175.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHH-hhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 863 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4789999999743 6999999999999999999999999999999999994 7999999999999987776554 445
Q ss_pred eEEEcCCcccccc-cHHhhccCCCC----------CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSE----------HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQRQ 930 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~----------~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~-~LSgGqkq 930 (1171)
++|+||++.+|.. |+++|+..... ....+.. ..+.+.++.+ |++. ..+.... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998876 89998853210 0101111 1223344432 4432 2344444 59999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~e 1007 (1171)
||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 37899999999999976 79999999999999999886
Q ss_pred Hhh
Q 001055 1008 LLS 1010 (1171)
Q Consensus 1008 l~~ 1010 (1171)
+..
T Consensus 232 ~~~ 234 (243)
T TIGR01978 232 AKE 234 (243)
T ss_pred hcc
Confidence 653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=373.15 Aligned_cols=211 Identities=24% Similarity=0.408 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHHhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 862 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 862 (1171)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999642 23 99999999999999999999999999999999999999999999998642 2334678
Q ss_pred heEEEcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
.++|+||++.+|.. |+++|+.+... ...+++.+.++.. |++...+....+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999964 99999975322 1223344444443 44444555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
+|++|||||||++||+.+++.+++.|+++.+ ++|+|+||||++++.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999998754 6899999999999877 99999999999999999999987654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=358.29 Aligned_cols=219 Identities=27% Similarity=0.418 Sum_probs=183.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|+.. .+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 7 ~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 59999999999643 6999999999999999999999999999999999999985 8999999998853 2344
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+.. . ... +.+.++++..++.+++ +...++.+.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6788899999999998899999996421 1 111 2233444444433222 22345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC-----cEEEEe
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLEY 1002 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~-----G~i~~~ 1002 (1171)
|++|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++++.. ||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999864 47999999999999987 999999999 999999
Q ss_pred cChhHHhhcCC
Q 001055 1003 DTPEELLSNEG 1013 (1171)
Q Consensus 1003 g~~~el~~~~~ 1013 (1171)
|+++++...+.
T Consensus 238 ~~~~~~~~~~~ 248 (261)
T PRK14258 238 GLTKKIFNSPH 248 (261)
T ss_pred CCHHHHHhCCC
Confidence 99999976543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=398.93 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=92.3
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh
Q 001055 912 GLDA-QVSEAGENFSVGQRQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 986 (1171)
Q Consensus 912 gl~~-~~~~~~~~LSgGqkqrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 986 (1171)
|+.. ..++...+|||||||||.|||+|+++| +++||||||+|||+.+...+++.|+++. .+.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356777899999999999999999999 9999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCcEEEEecChhHHhhcCC
Q 001055 987 DCDRILLL------DSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 987 ~~d~i~vl------~~G~i~~~g~~~el~~~~~ 1013 (1171)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 89999999 7999999999999987654
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=353.16 Aligned_cols=234 Identities=35% Similarity=0.635 Sum_probs=194.7
Q ss_pred HHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 138 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 138 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+.+.+..+.++. ...+.+.+.+.|+++|+++.+ +++|+++||+|++||+++|+|+||||||||+++|+|+++|
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 16 GFGELLEKAKQEN-NDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred HHHHHHhcccccc-cccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4555555433221 112223445579999999962 4699999999999999999999999999999999999999
Q ss_pred CCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 218 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 218 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++|.+. +.+.|+|++|++.+++.||+||+.++......++...++.+++.+.++.++.+..+.++..+..||||||||+
T Consensus 90 ~~G~I~-i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 90 SEGKIK-HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CCcEEE-ECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 987654 5667999999999988899999998754444455566777888888888888877788888899999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+++...++.|+|++||+++++..||++++|++|+++..|+++++...
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999987655433457899999999999988999999999999999999888754
Q ss_pred c
Q 001055 378 G 378 (1171)
Q Consensus 378 ~ 378 (1171)
.
T Consensus 249 ~ 249 (282)
T cd03291 249 R 249 (282)
T ss_pred c
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=356.02 Aligned_cols=219 Identities=23% Similarity=0.369 Sum_probs=181.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p---~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++||+++|+. +++|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3899999999974 369999999999999999999999999999999999975 5 589999999988642 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. .. .+ +.+.+.++.+++.. ++....+....+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 11 12223333333221 2234456667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988667899999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
..+.
T Consensus 236 ~~~~ 239 (252)
T PRK14255 236 LNPK 239 (252)
T ss_pred cCCC
Confidence 6543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=347.22 Aligned_cols=201 Identities=23% Similarity=0.375 Sum_probs=170.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|+. .++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987543 35778999
Q ss_pred EcCCcccccc-cHHhhccCC-CC-C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPF-SE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~-~~-~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+.+|+.+. .. . .+.++.++++..++.+ .......+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-----------YLDRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-----------HhhCCcccCCHHHHHHHHHHHHH
Confidence 9999998865 999998632 11 1 1223444445444443 34444568999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
+.+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++++.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999999876 99999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=362.69 Aligned_cols=218 Identities=27% Similarity=0.467 Sum_probs=182.7
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--Ch
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~ 857 (1171)
..|+++||+++|++. ++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 459999999999753 69999999999999999999999999999999999986 6899999999998643 34
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCCC--------------------CHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH--------------------SDADLWEALERAHLKDAIRRNSLGLDAQV 917 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~--------------------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~ 917 (1171)
..+|+.++|+||++.+|..|+++|+.+.... .++.+.++++.+++. .++.+..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHh
Confidence 5678899999999999988999999742100 011223333333221 2334455
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEE-EEEe
Q 001055 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LLLD 995 (1171)
Q Consensus 918 ~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i-~vl~ 995 (1171)
+..+.+||||||||++|||||+++|+||||||||+|||+.+...+.+.|+++.++.|+|+|||+++.+.. ||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6777899999999999999999999999999999999999999999999998777899999999999877 9997 5679
Q ss_pred CcEEEEecChhHHhhc
Q 001055 996 SGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 996 ~G~i~~~g~~~el~~~ 1011 (1171)
+|++++.|+++++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998754
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=351.22 Aligned_cols=209 Identities=28% Similarity=0.458 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999964 38999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|. .|+.+|+.+.. .... +++.++++.. |+....+....+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----------GIDHLLNRKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHHhcCcccCCHHHHHHHHHHHHH
Confidence 999998885 59999996321 1111 1223333333 444445555678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++|++|+|||||++||+.+.+.+++.|++... ++|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998653 7999999999999876 999999999999999999988754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=356.09 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=172.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999965 3699999999999999999999999999999999999999999999999988642 245899
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.+.. .....+. ...+.++++.+ |++........+||||||||++|||||+.+|
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999996421 1111111 11233444443 4444555666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEe--CcEEEEecChh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1006 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 1006 (1171)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999864 37999999999999877 99999998 59999987754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=354.41 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=181.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC------EecCCCChHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g------~~i~~~~~~~ 859 (1171)
.++++|++++|++. ++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 49999999999753 699999999999999999999999999999999999999997666665 5666666667
Q ss_pred HhhheEEEcCCcccccc-cHHhhccCCC---CC-CHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 860 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
+|+.++|+||++.+|.+ |+.+|+.+.. .. .+++ +.++++..++...+ ....+..+..|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88899999999998875 9999997421 11 1222 22233333322111 12345566789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.++..+.+.|.++.+++|+|+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999988767999999999999966 9999999999999999999998
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 241 ~~~~ 244 (257)
T PRK14246 241 TSPK 244 (257)
T ss_pred hCCC
Confidence 6543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=368.34 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=173.0
Q ss_pred cEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 162 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
+|+++|++++|+.+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996322 347999999999999999999999999999999999999999886421 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++.|||+||++.++ ..||+||+.++.. .+. ++..+.++..++.+..+..| .+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 44699999999987 5899999987521 121 23445666677665544433 58999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+...+++.+.+...+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999987776544 8999999999999865 8999999999999999999987
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
.+
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=333.51 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=159.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997542369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+||++.+|+.|+.+|+ ||||||||++|||||+.+|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999888998876 99999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
|||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=317.35 Aligned_cols=200 Identities=27% Similarity=0.452 Sum_probs=174.5
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------cCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------RGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----------~~~i~~v 232 (1171)
|.+++|.|+|... ==..+++|++||+++|+|||||||||||++++|+..|.+|.+... .+.++++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 6788999999632 235789999999999999999999999999999999999876542 2359999
Q ss_pred ecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.|| ..||.+||.+|... +.++++.++...++....+++|. +|||||||||||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999999 68999999998431 34677888899999999999995 89999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
++-+|++||||+|+|||.-+..+...+.+.. .++.|+++|||.++.+.. +|+++++++|+|.++|+..++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999999887666543 358999999999999876 6999999999999999998887653
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=323.97 Aligned_cols=212 Identities=27% Similarity=0.443 Sum_probs=184.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+.+|+|++-.++ .+|+++||+++|||++||+||||||||||+|.|+|.+.|++|++.++|.+++.+++.++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999988665 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccc-ccccHHhhccCCC-------CCCHHH--HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 867 IPQSPVL-FSGTVRFNLDPFS-------EHSDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 867 v~Q~~~l-f~~tv~~nl~~~~-------~~~~~~--i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+||+..+ |.-||+|-+.++. +..+++ ..+++.++++..+-.+ .-..|||||||||.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999865 7889999775431 111222 5666777766655443 33579999999999999
Q ss_pred Hhcc------CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 937 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 937 all~------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
.|.+ ++++|+||||||+||+.....+++..+++.. ++.|+.|-||++.... ||||++|.+||+++.|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9986 3469999999999999999999999999764 7899999999999877 999999999999999999999
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=347.35 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.++. ...+.++.+.++..++ +...+....+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL-----------TNTGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC-----------cHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999986421 2223344444544444 33344455789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
++|||||||++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999875 47899999999999876 99999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=348.32 Aligned_cols=215 Identities=32% Similarity=0.531 Sum_probs=185.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|+++.|+...++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997433457999999999999999999999999999999999999999886532 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++.+++.||+||+.++... ..++....++.+++.+.++.++.+..+..+....+|||||||||+|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998888999999986432 33445556667778887788887777777788899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+||||||++||+.+++.+++.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999876655 789999999999999889999999999999999988776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=351.74 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=175.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHHh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.++++||+++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 2699999999999999999999999999999999999999 999999999988632 2234
Q ss_pred hheEEEcCCcc-ccc--ccHHhhccC----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~~-lf~--~tv~~nl~~----~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
+.++|+||++. .|. .|+.+|+.. .. ...++++.+.++..++.+ ..+..+....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377776532 11 112233444444433321 112456677889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999976
Q ss_pred cCC
Q 001055 1011 NEG 1013 (1171)
Q Consensus 1011 ~~~ 1013 (1171)
...
T Consensus 231 ~~~ 233 (254)
T PRK10418 231 APK 233 (254)
T ss_pred CCC
Confidence 543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=330.79 Aligned_cols=206 Identities=28% Similarity=0.409 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ec
Q 001055 161 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~ 226 (1171)
+.++++|+++.|+.+. ..++|++|||+|.+||++||+|+||||||||.++|+|+.+|++|.+.. ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3689999999997431 125999999999999999999999999999999999999999986543 23
Q ss_pred CcEEEEecCCCC---CcccHHHHHhcCCC-----CCHHHHHHHHHHcCchHH-HhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVSWI---FNATVRDNILFGSA-----FEPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~~l---~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+.|-+|+|||.- +..||++-|.-+.. ....+..++++..+|... +++.| .+|||||||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRi 150 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRI 150 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHH
Confidence 459999999964 35699988864321 123456777888888654 45555 48999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
||||||..+|++||||||||+||+.....|++.+.+..+ .+-|.|+||||+..+.+ ||||++|++|++++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999998776543 47899999999999986 7999999999999999999987
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
+.
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 66
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=352.86 Aligned_cols=219 Identities=23% Similarity=0.389 Sum_probs=180.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 860 (1171)
.++++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 38999999999753 68999999999999999999999999999999999999999999999987 666555432
Q ss_pred ----hhheEEEcCCcc--cc-cccHHhhccC----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001055 861 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 928 (1171)
Q Consensus 861 ----r~~i~~v~Q~~~--lf-~~tv~~nl~~----~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGq 928 (1171)
++.++|+||++. ++ ..|+.+|+.. +......+. ...+.++++.+ |++ +..+.....|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999984 22 3477777642 111111111 13345667765 443 46677788999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988643 7899999999999986 999999999999999999
Q ss_pred hHHhhcCC
Q 001055 1006 EELLSNEG 1013 (1171)
Q Consensus 1006 ~el~~~~~ 1013 (1171)
+++.....
T Consensus 234 ~~~~~~~~ 241 (253)
T TIGR02323 234 DQVLDDPQ 241 (253)
T ss_pred HHHhcCCC
Confidence 99876543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=368.80 Aligned_cols=213 Identities=24% Similarity=0.381 Sum_probs=178.0
Q ss_pred eeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHHhhheEE
Q 001055 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 866 (1171)
Q Consensus 791 ~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 866 (1171)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999643 35 999999999999999999999999999999999999999999999986532 2346778999
Q ss_pred EcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||++.+|.. |+++|+.+... ....+. ...+.++++. .|++...+....+||||||||++|||||+.+|++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~--~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIEL--LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999975 99999975321 111110 1123344444 2555666667789999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...+..
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCc
Confidence 999999999999999999999998753 6899999999999877 999999999999999999999876543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=339.98 Aligned_cols=201 Identities=54% Similarity=0.964 Sum_probs=177.9
Q ss_pred EEEEeeEEEcCCCCC--CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCc
Q 001055 163 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~--~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 240 (1171)
++++|++++|+++.+ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+. +.+.|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~-~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-VPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE-EcCEEEEEecCchhcc
Confidence 478999999974321 3799999999999999999999999999999999999999998764 4568999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001055 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320 (1171)
Q Consensus 241 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD 320 (1171)
.|++||+.++...+.++..++.+.+++.+.++..|.+..+.++....+||||||||++|||||+.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999875555556667778888999999999888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 321 AHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 321 ~~~~~~l~~~l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+.+.+++++.++. ....++|+|++||+++.+..+|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999886543 4345799999999999998899999999884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=346.84 Aligned_cols=214 Identities=33% Similarity=0.536 Sum_probs=185.5
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++++|+.. ++++++++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 247999999999999999999999999999999999999999886532 124599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++.+++.||+||+.++.. .....+....+.+++.+.++.++.+..+..+....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999998643 234455666777788888888877777777888899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+||||||++||+.+.+.+.+.+.+.. +++|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 99999999999999999999776654 589999999999999889999999999999999988876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=352.52 Aligned_cols=223 Identities=24% Similarity=0.377 Sum_probs=184.8
Q ss_pred EEEEeeEEEeCC-------CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-
Q 001055 787 IKFEDVVLRYRP-------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 858 (1171)
Q Consensus 787 i~~~~vs~~y~~-------~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~- 858 (1171)
|+++||+++|+. ..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 899999999973 124799999999999999999999999999999999999999999999999998876653
Q ss_pred --HHhhheEEEcCCcc--cc-cccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001055 859 --DLRKILGIIPQSPV--LF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 928 (1171)
Q Consensus 859 --~~r~~i~~v~Q~~~--lf-~~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGq 928 (1171)
.+++.++|+||++. ++ ..|+.+|+.+. ..... ......+.+.++.+ |+++ ..+.....|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46788999999983 44 35899987421 01111 11122345556553 6653 5667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|+||||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999986 999999999999999999
Q ss_pred hHHhhcCCChHH
Q 001055 1006 EELLSNEGSSFS 1017 (1171)
Q Consensus 1006 ~el~~~~~~~~~ 1017 (1171)
+++... ...|.
T Consensus 237 ~~~~~~-~~~~~ 247 (268)
T PRK10419 237 GDKLTF-SSPAG 247 (268)
T ss_pred hhccCC-CCHHH
Confidence 998753 44444
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=345.93 Aligned_cols=218 Identities=32% Similarity=0.569 Sum_probs=188.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 356999999999999999999999999999999999999999886532 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++++++.||+||+.++.. .....+...++.+++.+.+..++.+..+.++....+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999988643 233445566777788888888888888888888899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 383 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 383 (1171)
+||||||++||+.+...+.+.+..... |+|+|++||+++++..||++++|++|++++.|+.+++......++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 999999999999999999998776655 8999999999999988999999999999999998887665444433
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=345.58 Aligned_cols=212 Identities=29% Similarity=0.503 Sum_probs=185.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 346999999999999999999999999999999999999999886532 13459
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|++|++.++..||+||+.++.. ....++...++.+++.+.++.++.+..+.++....+|||||||||+|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999998743 23455666777788888888888777777888889999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
++||||||++||+.+++++++.+.... +++|+|+|||+++++..||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999876654 5899999999999998899999999999999988877653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=333.34 Aligned_cols=172 Identities=32% Similarity=0.518 Sum_probs=158.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 864 (1171)
|+++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECCe--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 4789999999653 6999999999999999999999999999999999999999999999999998765 55678899
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+|+||++.+|.. |+++|+.+. ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999988854 999998642 99999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
+|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998764 5899999999999986 99999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=359.53 Aligned_cols=211 Identities=23% Similarity=0.403 Sum_probs=172.5
Q ss_pred CCCcEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------
Q 001055 159 GLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------ 224 (1171)
+.+.|+++|++|.|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345799999999997421 247999999999999999999999999999999999999999885421
Q ss_pred ----------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCc
Q 001055 225 ----------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDV 279 (1171)
Q Consensus 225 ----------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 279 (1171)
.++.||||+|+| .+|+.||+|||.|+.. .+.+ ++.+.++..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 134599999998 6788899999998732 1222 2223333444321
Q ss_pred cccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEE
Q 001055 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRII 358 (1171)
Q Consensus 280 ~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~ 358 (1171)
...+..+.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.....+|+|+|+||||++++. .||||+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1234556799999999999999999999999999999999999999999987666556899999999999875 589999
Q ss_pred EEeCCEEEEecChhHHhhcch
Q 001055 359 LVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 359 ~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
+|++|++++.|+++++.....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHH
Confidence 999999999999998876543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=365.34 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=174.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+. ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 357999999999999999999999999999999999999999886532 1246999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+..+ .+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999998 5799999998742 12 134556677778776665554 48999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++|||||||++||+.+++.+.+.+.+..++ |.|+|+||||++++. .||+|++|++|++++.|+++++.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999987765544 899999999999876 5899999999999999999988654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=345.44 Aligned_cols=206 Identities=25% Similarity=0.390 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r 861 (1171)
++++|+++.|+++ .+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...++. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999999766643 357
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+.++|+||++.+|. .|+.+|+.+.. .....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR-----ERARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999887 59999996432 11222111 1123344443 4555556666789999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998763 7999999999997666999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=348.56 Aligned_cols=201 Identities=28% Similarity=0.438 Sum_probs=166.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 57999999999999999999999999999999999999999885421 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
.|+|++|++.++. .||+||+.++.. .+. +++.++++..++.+..+ ....+|||||||||+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 5999999998875 699999987521 122 22344455555543332 334689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|+++||||||++||+.++..+++.+.+... .|+|+|+||||++++.. ||++++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999998776554 48999999999999875 89999999999999999887754
Q ss_pred c
Q 001055 377 N 377 (1171)
Q Consensus 377 ~ 377 (1171)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=331.22 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=156.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999987654 567788999
Q ss_pred EcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|.. |+++|+. ||||||||++|||||+.+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988875 9998862 9999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 36899999999999886 999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=341.71 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=183.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|++++|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 7899999999742 357999999999999999999999999999999999999999886532 234699
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
|++|++.+++.||+||+.+......+++.++++..++.+.+..++.+..+..+..+.+||||||||++|||||+.+|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999888999999876555566677788888999888888888888888889999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
||||||++||+.+++++++.+.+.. +++|+|++||+++++..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999776654 4689999999999998899999999999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=348.11 Aligned_cols=200 Identities=29% Similarity=0.450 Sum_probs=171.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 38999999999753 699999999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCccccc---ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~~lf~---~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|+||++.++. .|+.+|+.......++++.++++..++.+++ +.....||||||||++|||||+.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999997764 3788887543333455566666666655443 3345689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||||++||+.+...+++.|+++.+ ++|+|+|||+++++.. ||+|++|++ ++++.|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999988753 7899999999999876 999999965 7999999999864
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=346.53 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHHh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+.++||+++|++. .+++++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999764 2579999999999999999999999999999999999999 99999999999875 34577
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCCC-CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~-~~~~i~~~l~~~~~~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+.++|+||++.+|.. |+++|+.+.... ......+........+ .++. .++....+.....|||||+||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999976 999999742110 0000000111111122 2333 2444455566788999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecCh-hhhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~-~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 478999999998 46655 9999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=342.22 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=168.4
Q ss_pred eeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHHhhheEE
Q 001055 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 866 (1171)
Q Consensus 791 ~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 866 (1171)
||+++|++. .+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.... ....++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999764 34 99999999 999999999999999999999999999999999999886432 2346778999
Q ss_pred EcCCccccc-ccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||++.+|. .|+++|+.+... ..... ....+.++++.+ |++...+....+||||||||++|||||+.+|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999885 499999964321 11111 112234455553 566666777789999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998753 7899999999999876 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=343.45 Aligned_cols=228 Identities=25% Similarity=0.440 Sum_probs=185.7
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C----CCceEEECCEecCCCChHH
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p----~~G~I~i~g~~i~~~~~~~ 859 (1171)
++++|++..|.... ..+++||||+|++||++||||.|||||||+.+.|+|+++ | .+|+|.++|.|+..++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999996432 369999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----hheEEEcCCcc-cccc--cHHhhc----cCCCCC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001055 860 LR----KILGIIPQSPV-LFSG--TVRFNL----DPFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923 (1171)
Q Consensus 860 ~r----~~i~~v~Q~~~-lf~~--tv~~nl----~~~~~~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~ 923 (1171)
+| +.|++|||+|. -++- ||.+.+ ...... . .+...+.++.+++.+ .+...+..+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 43 35999999984 2322 555443 211111 1 123444455544432 12244566778
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
||||||||+.||-||+.+|++||.||||++||...++.|.+.|+++.+ +.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999999874 7999999999999887 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHHh
Q 001055 1001 EYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1001 ~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|.|+.+++..++...|.+..-.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999888888765543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=346.62 Aligned_cols=223 Identities=23% Similarity=0.368 Sum_probs=192.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++++|+.. ++++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 357999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+|++|++++|+.||+||+........+.+..+++..++.+.++.++.+..+.++..+.+||||||||++|||||+.+|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999889999997653333455667777888888899998888888999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc-hHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLM 385 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 385 (1171)
++||||||++||+.+...+++.+.+. .++.|+|++||+++.+..||||++|++|++++.|+++++.... +.+..++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999998876654 3589999999999999889999999999999999999887643 3444443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=362.87 Aligned_cols=203 Identities=26% Similarity=0.392 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.|+++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999986532 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 11 23445566666765544433 35899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+.+|++|||||||++||+.++.++.+.+.+..++ |.|+|+||||++++. .+|||++|++|+++..|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999987765443 899999999999975 5899999999999999999988654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=399.35 Aligned_cols=211 Identities=24% Similarity=0.318 Sum_probs=148.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHH---------HHhcCCCCCCc--------eEEEC
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELERG--------RILID 848 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~---------~l~g~~~p~~G--------~I~i~ 848 (1171)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 378888752 3799999999999999999999999999999 55564333111 13444
Q ss_pred CEecCCCCh----H------HHh---------hheE-----EEcCC------------------c---------------
Q 001055 849 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 871 (1171)
Q Consensus 849 g~~i~~~~~----~------~~r---------~~i~-----~v~Q~------------------~--------------- 871 (1171)
-.++..-+. . .+| +..| +.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 333322111 1 233 1122 22221 0
Q ss_pred -----ccccc-cHHhhccCCCC-C-----CHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHh
Q 001055 872 -----VLFSG-TVRFNLDPFSE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 872 -----~lf~~-tv~~nl~~~~~-~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lAral 938 (1171)
..+.+ ||.|+|.+... . ...++.+. + +.++. .|+... .++...+||||||||++|||+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~-----l-~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEK-----I-HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHH-----H-HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12222 66666654211 0 01111111 1 23333 466654 6778889999999999999999
Q ss_pred c---cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEe------CcEEEEecChhHH
Q 001055 939 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 1008 (1171)
Q Consensus 939 l---~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~------~G~i~~~g~~~el 1008 (1171)
+ .+|++|||||||+|||+.+.+.+.+.|+++. .+.|||+|||+++.+..||+|++|. +|++++.|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999999875 4789999999999996699999996 7999999999999
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 753
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=334.94 Aligned_cols=185 Identities=25% Similarity=0.381 Sum_probs=162.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHH-hhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 863 (1171)
++++|++++|++. ++++|+||++.+||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCE--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4689999999743 699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++|+||++.+|.+ |+++++ .. ...+||||||||++|||||+.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999988865 555544 01 12469999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhh--hcCEEEEEeCcEEEEecChhHHh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~--~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
++|||||||++||+.+...+++.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999998 59999999999999999 45454
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=351.00 Aligned_cols=209 Identities=28% Similarity=0.409 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 38999999999633 369999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCccc---ccccHHhhccCC--C------CCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 866 IIPQSPVL---FSGTVRFNLDPF--S------EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 866 ~v~Q~~~l---f~~tv~~nl~~~--~------~~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
|+||++.+ +..++++|+... . ... ++.+.++++.. |+....+....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-----------DMVEFRHRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHH
Confidence 99999865 344788887531 0 000 11233333443 34444455667899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999875 47899999999999876 9999777 89999999999875
Q ss_pred h
Q 001055 1010 S 1010 (1171)
Q Consensus 1010 ~ 1010 (1171)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=356.93 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 229 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 229 (1171)
+.|+++|++++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46999999999963 57999999999999999999999999999999999999999986532 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcC-CC--CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFG-SA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g-~~--~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
|||||++.++ ..||+||+.+. .. .+. .+..++++.+++....+ ....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999999887 58999999852 11 121 22334455555543322 233589999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||+++|++++|||||+|||+.+++++++.+.+...+|+|+|++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999877765568999999999999975 89999999999999999988754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=336.39 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=161.6
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHHh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+.++||+|.|+.. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999742 4579999999999999999999999999999999999999 89999999999987654 3567
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+.++|+||++.+|.. ||++|+.+.... . .++....||||||||++|||||+.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 789999999988865 999998643100 0 233446799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEe-cChhhhhh-cCEEEEEeCcEEEEec
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vt-H~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+|++|||||||++||+.+++.+++.|++..+ ++|+|+++ |+.+.+.. ||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 46766654 55677765 9999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=354.34 Aligned_cols=206 Identities=29% Similarity=0.461 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997431 236999999999999999999999999999999999999999886432
Q ss_pred ---------------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCch-HHHhc
Q 001055 225 ---------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDL 273 (1171)
Q Consensus 225 ---------------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~ 273 (1171)
.+..||||||+| .++..||+|||.|+.. .+. ++..++++.+++. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 133589999986 5678899999998731 222 2345556666664 2222
Q ss_pred CCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-
Q 001055 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS- 352 (1171)
Q Consensus 274 ~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~- 352 (1171)
....+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+.+....|+|+|+||||++++.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 344689999999999999999999999999999999999999999987766556899999999999875
Q ss_pred hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 353 QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 353 ~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
.||||++|++|++++.|+++++....
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcCH
Confidence 58999999999999999999886553
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=352.28 Aligned_cols=205 Identities=26% Similarity=0.392 Sum_probs=173.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|++...+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997433356999999999999999999999999999999999999999885422 23469
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
||++|+|. ++..||+|||.|+.. .+. +++.++++..++.+..+..+ .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 457899999998632 122 34556677777766554433 58999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|++|||||||++||+.+++.+++.+.+...+ |+|+|+|||+++++..||||++|++|+++..|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999987766544 8999999999999888999999999999999999887654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=361.86 Aligned_cols=203 Identities=29% Similarity=0.422 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.|+++|++++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35899999999963 56999999999999999999999999999999999999999886532 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||+|++.+| ..||+|||.|+.. .+ ..++.+.++..++.+..+.. ..+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 11 23455566666665544433 35899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+.+|+++||||||++||+.+++++.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999988765443 899999999999875 5899999999999999999988765
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=330.73 Aligned_cols=177 Identities=33% Similarity=0.533 Sum_probs=157.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3699999999999999999999999999999999999999999999999999888877888889999
Q ss_pred cCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001055 868 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947 (1171)
Q Consensus 868 ~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlL 947 (1171)
|| +++..++.+++ ...+.+||||||||++|||||+.+|++|||
T Consensus 79 ~q--------------------------~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98 33444444333 334568999999999999999999999999
Q ss_pred ecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 948 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 948 DEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998764 7899999999999866 9999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=337.32 Aligned_cols=206 Identities=34% Similarity=0.569 Sum_probs=179.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|+++.|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999632 357999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|++|++.++..||.||+.++.. ....++.+.++..++.+.++..|.+..+.+.....+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999887899999987643 23445667788889988888888888888888888999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
++||||||++||+.+++.+++.+.+... ++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999998776544 48999999999998778999999999987643
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=333.47 Aligned_cols=182 Identities=29% Similarity=0.470 Sum_probs=160.6
Q ss_pred cEEEEeeEEEeCCC----CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHH
Q 001055 786 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~----~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
.++++||+++|+.. ..++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 38999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 860 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+++.++|+||++.+|.. |+++|+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988864 9999875310 0 0 06999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChh-hhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~-~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 3789999999997 5655 9999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=351.72 Aligned_cols=206 Identities=25% Similarity=0.437 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
+|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 378999999997421 136999999999999999999999999999999999999999885421
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|||++|+| .+|..||.||+.|+.. ... .++.++++..++...+ .+....+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 234599999998 6788899999998732 122 2344555555653221 1234468999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|+||||++++. .||||++|++|+++++|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999977665556899999999999986 589999999999999999998
Q ss_pred Hhhc
Q 001055 374 LSNN 377 (1171)
Q Consensus 374 l~~~ 377 (1171)
+...
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8654
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=352.18 Aligned_cols=207 Identities=28% Similarity=0.462 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------e
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~ 225 (1171)
.|+++|++|.|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999997422 247999999999999999999999999999999999999999885421 2
Q ss_pred cCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..|||+||+| .+++.||+|||.|+.. .+. +++.++++.+++.. .+..+.....||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 34699999998 4678899999997631 222 23445566666540 011234457899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
++|||||+.+|++|||||||++||+.++.++++.+.....+ |+|+|+||||++++. .||||++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999987766543 899999999999985 5899999999999999999887
Q ss_pred hhc
Q 001055 375 SNN 377 (1171)
Q Consensus 375 ~~~ 377 (1171)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=327.53 Aligned_cols=215 Identities=24% Similarity=0.484 Sum_probs=188.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+++++|+++|+.. .|++|+||.++||++.|++|||||||||++++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 38999999999865 69999999999999999999999999999999999999999999999998864 4678899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+|.+..|+.. ||.+.|.+++. ....++. ..+..|++++ ++-........+||-|++|++.+-.+++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999955 99999887653 3344443 2355677775 333445566778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
|+++|||||+|||||.+.+.+.+.+.++. +|.|||+.||+|+-++. ||+++.|++|+.|-+|+.+++.+..+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999876 58999999999999998 99999999999999999999986543
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=360.75 Aligned_cols=203 Identities=29% Similarity=0.424 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999886532 124599
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||+|++.+| ..||+|||.|+.. .. .+++.++++..++.+..+..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 5799999998742 12 124455667777766665554 4899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+.+|++|||||||++||+..+..+.+.+.+..+ .|.|+|+||||+.++. .+|||++|++|++++.|+++++..+
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998776544 4899999999999865 5899999999999999999988654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=377.33 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=182.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh-hhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r-~~i 864 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 49999999999753 699999999999999999999999999999999999999999999999999877766654 469
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
||+||++.++.. |+++|+.+...... +.. ..+.++++.+ |++...+....+|||||||||+|||||+.+|+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ 160 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999988865 99999975422111 111 1123334432 45445566677899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|||||||++||+.+...+.+.|+++. +++|||++|||++.+.. ||+|++|++|++++.|+++++..
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999875 47899999999999877 99999999999999999988764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=340.50 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=159.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+.. .+++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 246999999999999999999999999999999999999999885422 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++ ..||+||+.++.. .. .+++.++++..++.+..+.. ..+|||||||||+|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 699999999887 5799999987521 11 23455566666665544433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
||||+.+|+++||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999877655568999999999999875 799999999874
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=329.60 Aligned_cols=172 Identities=29% Similarity=0.473 Sum_probs=155.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 864 (1171)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ ...|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 7999999999999999999999999999999999999999999999999988764 3467789
Q ss_pred EEEcCCc---ccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~---~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||++ .++ ..|+++|+.+... ||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864200 99999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++++.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999875 47899999999999988 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=306.09 Aligned_cols=194 Identities=26% Similarity=0.406 Sum_probs=168.3
Q ss_pred eCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccc
Q 001055 796 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 875 (1171)
Q Consensus 796 y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 875 (1171)
|.....++|+++||++.+||.++|.||||||||||++.++-+..|++|++++.|.+++.+++..+|++|+||-|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 43334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhccC-CC---C-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecC
Q 001055 876 GTVRFNLDP-FS---E-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950 (1171)
Q Consensus 876 ~tv~~nl~~-~~---~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEp 950 (1171)
+||.+|+.+ +. . .... .+.+++.++. -.++.+.++..+||||||||++|+|-|.--|+||+||||
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~---------aa~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRA---------AALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred cchhhccccchHHhccCCChH---------HHHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 999999964 21 1 1122 2334444432 124566778889999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhh-hhhcCEEEEEeCcEE
Q 001055 951 TAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNT-IIDCDRILLLDSGRV 999 (1171)
Q Consensus 951 Ts~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~-~~~~d~i~vl~~G~i 999 (1171)
||+||+.+++.|.+.|.++.. +..++.||||-+. +..+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999999873 5899999999999 556999999999876
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=343.73 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHHhh-
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r~- 862 (1171)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...++...++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 49999999999743 699999999999999999999999999999999998 6899999999999998877665554
Q ss_pred heEEEcCCcccccc-cHHhhccCCCC----C---CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC-CCChhHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSE----H---SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE-NFSVGQRQLL 932 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~----~---~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~-~LSgGqkqrl 932 (1171)
.++|+||++.++.+ |+.+|+..... . .+....+.. ..+.+.++.+ |+. +..+.... .||||||||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHHH
Confidence 48999999998876 88888753211 0 000000000 1123333332 343 33444444 5999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhHH
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++.+
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999999999875 47999999999999875 899999999999999998843
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=359.34 Aligned_cols=205 Identities=28% Similarity=0.420 Sum_probs=170.4
Q ss_pred cEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 162 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
+|+++|++|+|+.+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999997322 357999999999999999999999999999999999999999886422 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..|||++|++.++ ..||+||+.++.. .+. ++..+.++..++.+..+ ....+|||||||||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 34699999999887 5799999987521 122 23344555555544333 23468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999998776644 38999999999999875 8999999999999999999886
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=343.42 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=159.8
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEc-CCcccc-cccH
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLF-SGTV 878 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~tv 878 (1171)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+| |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcH
Confidence 369999999999999999999999999999999999999999999999998754 2345677899998 556666 4599
Q ss_pred HhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCC
Q 001055 879 RFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955 (1171)
Q Consensus 879 ~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD 955 (1171)
++|+.+.. .....+..+. +.+.++. .|++...+....+||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSEL--LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99985421 1222222211 2233333 245445555667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 956 VRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 956 ~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998753 6899999999999877 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=336.76 Aligned_cols=197 Identities=24% Similarity=0.382 Sum_probs=161.0
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHHhhhe
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 864 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~i 864 (1171)
++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999753 69999999999999999999999999999999999999999999999999765432 2356789
Q ss_pred EEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|++|++.+|. .|+++|+.+.. .....+.. ..+.++++.+ |++...+....+||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKR-----EKKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999886 59999996421 11111111 1122333332 44444555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEE
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999998754 78999999999987779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=337.73 Aligned_cols=193 Identities=29% Similarity=0.428 Sum_probs=160.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 57999999999999999999999999999999999999999886532 12469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
||++.++ ..||+||+.++.. ... +++.+.++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 111 234455566665544333 33589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
.+|+++||||||++||+.+++++++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998776544 48999999999999865 7999999999988754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.21 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999963 246999999999999999999999999999999999999999886532 13469
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
||++|+| .++..||.||+.|+.. .+ .+++..+++.+++.+..+..+ .+|||||||||+||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 4678899999998632 12 134556667777765554443 48999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|||+.+|++|||||||++||+.++.++++.+.+...+|+|+|++||+++++. .||||++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999987766556899999999999985 5899999999999999998654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=340.80 Aligned_cols=201 Identities=31% Similarity=0.457 Sum_probs=166.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 4789999999963 57999999999999999999999999999999999999999886432 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|+|.++ ..||+||+.++... +. ++..+.++..++.+..+ ....+|||||||||+|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHH
Confidence 99999887 57999999875321 11 22334455555543333 3346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||||+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999977765543 8999999999998765 89999999999999999887754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=357.02 Aligned_cols=202 Identities=31% Similarity=0.446 Sum_probs=170.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.|||
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 4889999999963 56999999999999999999999999999999999999999886532 1246999
Q ss_pred EecCCCCC-cccHHHHHhcCCC-------CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 232 VPQVSWIF-NATVRDNILFGSA-------FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~-------~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|+|++.+| ..||+|||.|+.. .+ .++..+.++..++.+..+.. ..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHH
Confidence 99999998 5799999998732 11 12344556666665444433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|++|||||||++||+.+++.+.+.+.+...+ |.|+|+||||++++.. ||||++|++|++++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999987765544 8999999999999765 899999999999999999988654
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=360.14 Aligned_cols=202 Identities=30% Similarity=0.461 Sum_probs=172.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|.+.. .++.|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 589999999996 357999999999999999999999999999999999999999886432 23469
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-----C---C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
||++|++.+ ++.||+||+.++.. . . .+++.++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 58999999988641 1 1 2345566677776554432 3468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+++|++|||||||++||+.++..+++.+.+....|+|+|++||+++++. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999999987776556899999999999996 489999999999999999999876
Q ss_pred c
Q 001055 377 N 377 (1171)
Q Consensus 377 ~ 377 (1171)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 5
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=356.15 Aligned_cols=203 Identities=25% Similarity=0.408 Sum_probs=169.1
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCc
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGT 228 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~ 228 (1171)
.+.|+++|++++|++ +.+|+||||+|++|+++||+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 346999999999963 56999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCC-cccHHHHHhcC-C--CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFG-S--AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g-~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
|||+||++.++ ..||.||+.+. . .... ++..+.++.+++.+.. .....+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHH
Confidence 99999999886 78999999752 1 1111 1223344444443322 233468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||+++|+++||||||+||||.+++++++.+.+....|+|+|++||+++++.. ||||++|++|++++.|+++++..
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999887765568999999999999975 89999999999999999998754
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=330.98 Aligned_cols=181 Identities=25% Similarity=0.400 Sum_probs=158.8
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHHh
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.++++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 38999999999641 146999999999999999999999999999999999986 489999999999885 4567
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
++++|++|++.+|.. |+++|+.+.. . +. +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~---------~~---------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------L---------LR---------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------H---------Hh---------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988865 9999986310 0 00 699999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhh-hh-hcCEEEEEeC-cEEEEec
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNT-II-DCDRILLLDS-GRVLEYD 1003 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~-~~-~~d~i~vl~~-G~i~~~g 1003 (1171)
+|++|||||||++||+.+...+++.|+++.+ ++|+|++||+++. +. .||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998754 7899999999984 54 4999999998 9998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=341.10 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=174.4
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46677774 27999999999999999999999999999999999985 599999999999887877788889999
Q ss_pred cCCcccc-cccHHhhccCCCCC--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc----
Q 001055 868 PQSPVLF-SGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR---- 940 (1171)
Q Consensus 868 ~Q~~~lf-~~tv~~nl~~~~~~--~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~---- 940 (1171)
||++.++ ..|+++|+.++... ...+. ...+.+.++.+ |++...+.....||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9998654 56999999754221 11111 11233444443 55555566778899999999999999997
Q ss_pred ---CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 941 ---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 941 ---~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998876 99999999999999999988754
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=342.20 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=164.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
++++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46999999999999999999999999999999999999999886421 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC-------------CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSAF-------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
+|+||++.++. .||+||+.++... .. +++.+.++..++.+ ..+....+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999998875 5999999875311 01 11222333333322 23445578999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 370 (1171)
||||||+|||||+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999877665568999999999999865 89999999999999999
Q ss_pred hhHHhh
Q 001055 371 FEDLSN 376 (1171)
Q Consensus 371 ~~~l~~ 376 (1171)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=306.25 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=184.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----------
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---------- 855 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~---------- 855 (1171)
.++++|+.++|+.. .+|++||++.++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..|.-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999865 699999999999999999999999999999999999999999999999887421
Q ss_pred C---hHHHhhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 856 G---LMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 856 ~---~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
+ ...+|.++|+|+|+..|++. ||.||..-.+ ..+..+..+ + +..++.+ .|+....+..+..||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e---~--Ae~~L~k--VGi~ek~~~YP~~LSGG 156 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE---R--AEKYLAK--VGIAEKADAYPAHLSGG 156 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHH---H--HHHHHHH--hCchhhhhcCccccCch
Confidence 2 23368889999999999865 9999985221 112222111 1 2233333 35555555666789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|+||++|||||..+|+++++|||||+|||+-.-++.+.++++. .|+|+++|||.|.++.+ +.+|+.|.+|.|-|+|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999887 48999999999999998 999999999999999999
Q ss_pred hHHhhcCCC
Q 001055 1006 EELLSNEGS 1014 (1171)
Q Consensus 1006 ~el~~~~~~ 1014 (1171)
+++..++.+
T Consensus 237 ~qvf~nP~S 245 (256)
T COG4598 237 EQVFGNPQS 245 (256)
T ss_pred HHHhcCCCC
Confidence 999987754
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=380.84 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=88.2
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhcc---CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh
Q 001055 912 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 986 (1171)
Q Consensus 912 gl~~-~~~~~~~~LSgGqkqrl~lArall~---~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 986 (1171)
|+.. ..++...+|||||+|||+|||+|++ +|+++||||||+|||+.+...+++.|+++. .+.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 3577788999999999999999997 599999999999999999999999999876 4789999999999998
Q ss_pred hcCEEEEE------eCcEEEEecChhHH
Q 001055 987 DCDRILLL------DSGRVLEYDTPEEL 1008 (1171)
Q Consensus 987 ~~d~i~vl------~~G~i~~~g~~~el 1008 (1171)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=358.57 Aligned_cols=202 Identities=27% Similarity=0.420 Sum_probs=172.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--Cccce----------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAV----------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~--g~~~~----------~~~~i 229 (1171)
.|+++|++++|+. +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |.+.. .++.|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 5899999999963 469999999999999999999999999999999999999998 86532 13469
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
|||+|++.+| ..||+|||.|+.. ... .++.++++..++.+..+..+ .+|||||||||+|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIAR 150 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5699999998632 121 24455666666665554444 589999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC--CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~--~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||+.+|++|||||||++||+..+.++.+.+.+...+ |.|+|+||||++++.. +|||++|++|++++.|+++++..+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988766544 7899999999999764 899999999999999999988754
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=348.45 Aligned_cols=206 Identities=30% Similarity=0.517 Sum_probs=169.8
Q ss_pred EEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------
Q 001055 163 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------- 224 (1171)
++++|++|+|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 246999999999999999999999999999999999999999885422
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 225 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 225 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.+..||||+|+| .+++.||+|||.|+.. .+. +++.++++.+++...+ .+....+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 123599999997 5778899999988631 122 2344556666664221 12334689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||+|||||+.+|+++||||||++||+.+..++++.+..... .|.|+|+||||++++.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999998776644 48999999999999864 89999999999999999988
Q ss_pred Hhhcc
Q 001055 374 LSNNG 378 (1171)
Q Consensus 374 l~~~~ 378 (1171)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 76543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=359.96 Aligned_cols=202 Identities=29% Similarity=0.398 Sum_probs=170.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+. +++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .+..|||
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 56999999999999999999999999999999999999999886532 1235999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.+| ..||+|||.|+.. ... +++.++++..++.+..+.. ..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999987 5799999998632 121 3445566666665544433 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++|||||||++||+.+++.+.+.+.+...+ |.|+|+||||++++.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999887765443 8999999999998765 899999999999999999888654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=348.14 Aligned_cols=207 Identities=24% Similarity=0.432 Sum_probs=168.8
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.++++|++|+|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996322 247999999999999999999999999999999999999999885421
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..||||||+| .+|..||.|||.|+.. .+. +++.+.++.+++... ..+....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 234699999997 5777899999998631 222 223344444554311 12234568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 372 (1171)
||++|||||+.+|+++||||||++||+.++.++.+.+.+... .|.|+|+|||+++++. .||||++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999997776544 4899999999999986 57999999999999999998
Q ss_pred HHhhcc
Q 001055 373 DLSNNG 378 (1171)
Q Consensus 373 ~l~~~~ 378 (1171)
++.+..
T Consensus 232 ~~~~~~ 237 (286)
T PRK13646 232 ELFKDK 237 (286)
T ss_pred HHHhCH
Confidence 876543
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=314.82 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=172.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
++++.+++++|++ -..+++||||++++||++||.|||||||||+|++|++++.|++|.+.. .+++||
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 3789999999975 234899999999999999999999999999999999999999987543 456799
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
.++-+..++ ..|++|||.|... .. +.+..+..+..++.+.++ .+..++|-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 999777787 7899999986421 11 234444555555555544 3446899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+++|++++|||||||||..+.+.+.+.+.+.+..|+++|+.||.+++++ .|||++++++|+++..|+.+++...
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999988888888999999999999998 5899999999999999999887543
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=377.05 Aligned_cols=215 Identities=22% Similarity=0.367 Sum_probs=181.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-Hhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~ 862 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGGV--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCCe--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 38999999999743 699999999999999999999999999999999999996 8999999999998766554 457
Q ss_pred heEEEcCCcccccc-cHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
.+|||||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975321 1111111 1234455553 555555666788999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|||+.+|+||||||||++||+.+...+++.|.++. +++|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998875 47899999999999987 9999999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=378.17 Aligned_cols=215 Identities=22% Similarity=0.344 Sum_probs=181.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 38999999999753 69999999999999999999999999999999999999999999999999987776543 4579
Q ss_pred EEEcCCcccccc-cHHhhccCCCC----C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE----H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~----~------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
+||||++.++.. |+++|+.+... . ...+.. ..+.+.++.+ |+....+....+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999964211 0 111111 1233445443 5555556667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|||||+.+|+||||||||++||+.+...+++.|+++. .++|||+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999875 37899999999999987 9999999999999999998875
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=318.43 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=147.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 865 (1171)
++++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 699999999999999999999999999999999999999999999999999877654 4567899
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
|+|| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 9999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999875 47899999999998876 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=320.31 Aligned_cols=163 Identities=33% Similarity=0.432 Sum_probs=148.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 36999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+||++.+++.|+++|+.+. ....||||||||++|||||+++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 235799999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
|||||++||+.+.+.+.+.|++. ++|+|++||+++....||++++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999985 68999999999877679999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=376.00 Aligned_cols=215 Identities=24% Similarity=0.364 Sum_probs=180.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-Hhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 864 (1171)
.|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGV--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCe--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999753 6999999999999999999999999999999999999999999999999987655444 35679
Q ss_pred EEEcCCcccccc-cHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+|+||++.++.. |+++|+.+... ....+.. ..+.+.++.+ |+....+....+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 1111111 1233445543 4544456667789999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|++|||||||++||+.+...+++.|+++. .++|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 46899999999999987 9999999999999999887764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=342.43 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHHh-hh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 863 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 6999999999999999999999999999999999994 69999999999998877766554 56
Q ss_pred eEEEcCCcccccc-cHHhhccCC-CC---CCHHHHHHHHH-HhcHHHHHHHccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPF-SE---HSDADLWEALE-RAHLKDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~-~~---~~~~~i~~~l~-~~~~~~~i~~lp~gl~-~~~~~~~-~~LSgGqkqrl~lA 935 (1171)
++|++|++.++.. |..+++... .. ....+..+..+ ...+.+.++.+ ++. ....... .+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999977654 544443211 00 00000000000 01122333332 221 1222333 36999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhHH
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988754 6899999999999987 899999999999999998754
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=340.61 Aligned_cols=198 Identities=28% Similarity=0.372 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEe
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 233 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~ 233 (1171)
+.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 57999999999999999999999999999999999999999887532 234699999
Q ss_pred cCCCCCc-ccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 234 QVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 234 Q~~~l~~-~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
|++.++. .||+||+.++... ..++..+.++..++.+..+ ....+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998875 7999999876321 2344556666666654433 3346899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||||++||+.++..+.+.+.+... .++|+|+||||++++.. ||+|++|++|+++++|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999997766533 48999999999999864 8999999999999887654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=338.47 Aligned_cols=199 Identities=24% Similarity=0.384 Sum_probs=163.9
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------------
Q 001055 161 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------- 225 (1171)
+.++++|++|.|+... .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|.+...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 3589999999997422 2579999999999999999999999999999999999999998854220
Q ss_pred --cCcEEEEecCCCCCc-ccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 226 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 226 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
+..|+|++|++.++. .||+||+.++. .... ++..++++..++.+..+ ....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHH
Confidence 145999999998874 69999998631 1111 23445556665543332 334689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
|++|||||+.+|+++||||||++||+.+++++.+.+.+... +|+|+|+|||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999998766543 5899999999999999889999999999998765
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=337.97 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=163.9
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHHhhheEEEcCCcc-cc-c-
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 875 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 875 (1171)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998653 223467999999995 34 3
Q ss_pred ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc---hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001055 876 GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949 (1171)
Q Consensus 876 ~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~---~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 949 (1171)
.|+.+|+.... .....+. ...+.+.++.+ +++ +..+..+.+|||||||||+|||||+++|+||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 48888874211 0111110 01123333332 333 45566778899999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 950 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 950 pTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||++++|++|++++.|+++++.....
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 9999999999999999998753 6899999999999976 99999999999999999999976543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=332.60 Aligned_cols=189 Identities=30% Similarity=0.459 Sum_probs=159.2
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEEEEecC
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQV 235 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~ 235 (1171)
++|++++|++. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 68999999631 57999999999999999999999999999999999999999986532 12469999999
Q ss_pred CC--CCcccHHHHHhcCCC---CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 236 SW--IFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 236 ~~--l~~~Tv~eni~~g~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
+. ++..||+||+.++.. ....+..++++..++.+..+.. ..+||||||||++|||||+.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCCCEE
Confidence 73 567899999987532 1224566677777776544433 3589999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
||||||++||+.+++.+.+.+.....+|+|+|++||+++++.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999877665568999999999999875 8999999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=344.23 Aligned_cols=206 Identities=31% Similarity=0.457 Sum_probs=173.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|+++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|.+.. .+..
T Consensus 4 ~~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 35899999999963 2357999999999999999999999999999999999999999886421 1345
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|||++|++. +++.||.|||.++.. ... +++.++++..++.+.++..+ .+|||||||||+|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~l 151 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAI 151 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHH
Confidence 999999983 567899999987521 121 33556677777766655444 4899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||||+.+|+++||||||++||+.+++++++.+.+...+ |.|+|++||+++++..||||++|++|++++.|+.+++....
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999987766544 89999999999999889999999999999999998876543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=338.01 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=163.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCccce-------------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAV------------- 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~-----~~~~g~~~~------------- 224 (1171)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 47999999999999999999999999999999999999 898875421
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 225 -IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 225 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.+..++|++|++.++..||+||+.++.. . . .++..++++..++.+..+..++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 1345999999998888899999987521 1 1 1234455666666544332210 3689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|++|||||+.+|+++||||||++||+.+++++++.+.+...+ +|+|++|||++++.. ||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999987766555 899999999998764 89999999999999887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=329.66 Aligned_cols=194 Identities=24% Similarity=0.334 Sum_probs=164.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999886543 467889999
Q ss_pred EcCCcccc-cccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||++.++ ..|+++|+.++.. ..++.+.++++..++.++ .+....+||||||||++|||||+++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 4699999976432 234455555666555433 2334568999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEE
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 994 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl 994 (1171)
|||||||++||+.+++.+.+.|++.. +++|+|++||+...+.. |++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998865 47999999999887665 9999876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=346.93 Aligned_cols=202 Identities=29% Similarity=0.508 Sum_probs=174.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-----------cCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------RGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-----------~~~i~ 230 (1171)
.+.++|++++|+. ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|.+... +.+||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 5788999999973 3679999999999999999999999999999999999999998875432 34699
Q ss_pred EEecCCCCC-cccHHHHHhcCC-----C--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGS-----A--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||+|.++ ..||+||+.|.. + .+.+++.++++..+|.+.. +....+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999986 689999998741 1 1245677778887776622 12346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC-CEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~-~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+++|++|||||||+||||.++..+++.+.+...+| +||+++||.++.+.. ||||++|++|+++++|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999888877766 799999999999987 89999999999999999888653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=350.53 Aligned_cols=201 Identities=25% Similarity=0.404 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 5899999999963 56999999999999999999999999999999999999999886532 134699
Q ss_pred EEecCCCCC-cccHHHHHhcC-C--CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFG-S--AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g-~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||++.++ ..||+||+.+. . ..+. ++..+.++..++.+.. .....+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 999999887 67999999742 1 1222 1233344455544332 23346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+.+|+++||||||+|||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999887765568999999999999875 89999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=359.57 Aligned_cols=228 Identities=26% Similarity=0.448 Sum_probs=187.3
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CceEEECCEecCCCChHH
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~----~G~I~i~g~~i~~~~~~~ 859 (1171)
.++++|+++.|.... .++++||||+|.+||++||||.|||||||+.++|.|++++. +|+|.++|.|+..++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 489999999996443 25999999999999999999999999999999999999988 899999999998888766
Q ss_pred Hh----hheEEEcCCcc-cccc--cHHhhcc----CCCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 860 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 860 ~r----~~i~~v~Q~~~-lf~~--tv~~nl~----~~~~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
.| +.|+||||+|. .++. ||.+.+. .....+ .++..+.++.+++.+ .-.. +..+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~-------~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPD-------PERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCC-------hhhh--ccCCccc
Confidence 53 45999999984 4543 6665443 111111 222333444443322 1111 3467899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
|||||||+.||+||+.+|++||+||||++||+.+++.|.+.|+++. .+.++|+||||+..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 47999999999999988 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHh
Q 001055 1002 YDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1002 ~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
.|+++++++++...|.+..-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh
Confidence 999999999988888866533
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=335.91 Aligned_cols=198 Identities=24% Similarity=0.378 Sum_probs=165.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 57999999999999999999999999999999999999999886432 1235999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.++ ..||+||+.++. ..+ .++..+.++..++.+..+.. ..+||||||||++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999887 469999997641 111 22345566666665544332 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++.. |||+++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999987766554 8999999999999875 799999999999998877653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=340.58 Aligned_cols=199 Identities=29% Similarity=0.435 Sum_probs=165.0
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 357999999999999999999999999999999999999999885421 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------------C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
.++|+||++.++ ..||+||+.++... . .+++.+.++..++.+.. +....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 599999999887 57999999875310 1 12334445555554333 234468999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g 369 (1171)
||||||+|||||+.+|+++||||||++||+.+++++.+.+.+... .|+|+|+|||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998776544 3899999999999986 48999999999999999
Q ss_pred ChhHH
Q 001055 370 TFEDL 374 (1171)
Q Consensus 370 ~~~~l 374 (1171)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=338.00 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=167.3
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ec
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 226 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 226 (1171)
|+++|++++|++.. .+++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 127999999999999999999999999999999999999999885421 13
Q ss_pred CcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 227 GTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
..++|+||++.+|. .|++||+.++.. .+ .++..+.++..++.+..+. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 46999999999884 799999986421 12 1233445555555544333 33589999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|+++||||||++||+.+++.+++.+.....+ |+|+|++||+++++.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999987765544 8999999999999865 89999999999999998877643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=335.90 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++|+|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 57999999999999999999999999999999999999999886432 13469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCC---CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
+|++|++.++..||+||+.++... ...+..+.++..++.... ......+||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999998888999999875321 123444555666653211 1234468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+++||||||++||+.+++++.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999987776544 48999999999999875 899999999999999999887654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=335.51 Aligned_cols=198 Identities=29% Similarity=0.413 Sum_probs=163.3
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEec
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 234 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 234 (1171)
|+++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 157999999999999999999999999999999999999999886532 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 235 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 235 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++.++. .||+||+.++.. .. .+++.+.++..++.+..+.. ..+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHHHHHcC
Confidence 998875 799999986521 11 23345566666665544433 358999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEe--CCEEEEecCh
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH--EGMVKEEGTF 371 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 371 (1171)
|+++||||||++||+.+++.+++.+.+... .++|+|+|||+++++.. ||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999998776543 48999999999998764 89999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=336.31 Aligned_cols=192 Identities=28% Similarity=0.426 Sum_probs=158.0
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
|+++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 157999999999999999999999999999999999999999886421 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..++|++|++.++. .||+||+.++.. .. .+++.+.++..++.+..+ ....+|||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 246999999998875 599999987532 11 123445555555544333 33468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEE
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 365 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i 365 (1171)
+|||||+.+|+++||||||++||+.+++++.+.+.+... .++|+|+|||+++++..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999998776654 48999999999999888899999999963
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=344.09 Aligned_cols=202 Identities=32% Similarity=0.451 Sum_probs=169.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
++++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 356999999999999999999999999999999999999999885421 12459
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|+|. +++.||.|||.++.. .+ .+++.++++..++.+..+. ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 457899999987631 12 1234455666666554433 3468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.++..+++.+.+...+|.|+|++||+++.+..|||+++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999876655568999999999999988999999999999999998887543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=356.47 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=171.4
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcE
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 229 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 229 (1171)
.+.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+.+|++|.+.. .++.|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 446999999999963 46999999999999999999999999999999999999999886432 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
|||+|++.+| ..||.|||.|+.. ... +++.+.++..++.+..+..+ .+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5799999998732 121 23445566666655444333 589999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||+.+|++|||||||++||+..++++.+.+.+..+ .|.|+|+||||++++. .+||+++|++|++++.|+++++..+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999887766543 4899999999999875 5899999999999999999988754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=338.94 Aligned_cols=194 Identities=26% Similarity=0.411 Sum_probs=161.6
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccc-ccHHhhc
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 882 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~nl 882 (1171)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999887 5999998
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHH
Q 001055 883 DPF-----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957 (1171)
Q Consensus 883 ~~~-----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~ 957 (1171)
.+. ....+.+.. ..+.++++. .|++...+....+||||||||++|||||+.+|++|||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERR-----AIVEEHIAL--VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHH-----HHHHHHHHH--cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 642 112222211 112334444 24555556667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 958 TDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 958 t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999988653 7899999999999877 9999999999999999877663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=330.69 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=163.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 478999999963 57999999999999999999999999999999999999999885432 13359999
Q ss_pred ecCCCCC-cccHHHHHhcCC---CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 233 PQVSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||++.++ ..||+||+.++. ..+.++...+++..++.+..+. ...+|||||||||+|||||+.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999886 689999997652 1234556666777777654433 335899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
++||||||++||+.+++.+++.+.+....++|+|++||+++++.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999777655568999999999999875 8999999999988754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-37 Score=330.23 Aligned_cols=194 Identities=25% Similarity=0.343 Sum_probs=163.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 7899999999753 6999999999999999999999999999999999999999999999999987643 456778999
Q ss_pred EcCCccccc-ccHHhhccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
++|++.++. .|+++|+.+... ..++++.++++..++. ...+....+||||||||++|||||+++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-----------GFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-----------HHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 499999964321 1223444455554443 333445678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhc-CEEEEE
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDC-DRILLL 994 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~-d~i~vl 994 (1171)
|++|||||||++||+.+.+.+++.|+++. .++|+|++||+++++..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 478999999999999874 566665
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=339.18 Aligned_cols=199 Identities=27% Similarity=0.430 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 257999999999999999999999999999999999999999885421 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------------C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
.++|+||++.++ ..||+||+.++... . .++..+.++..++... .+..+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 599999999887 57999999864210 1 1223334444444332 2344578999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g 369 (1171)
||||||+|||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999998776544 4899999999999988 58999999999999999
Q ss_pred ChhHH
Q 001055 370 TFEDL 374 (1171)
Q Consensus 370 ~~~~l 374 (1171)
+++++
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=344.29 Aligned_cols=205 Identities=25% Similarity=0.423 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 226 (1171)
+.|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 36999999999962 357999999999999999999999999999999999999999885421 23
Q ss_pred CcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..+||+||++ .+++.||+||+.++.. ... +++..+++..++.+..+ ....+||||||||+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl 150 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRV 150 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHH
Confidence 4699999998 4578899999987521 121 33455566667654433 34568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++. .|||+++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999977766544 899999999999987 58999999999999999999886
Q ss_pred hcc
Q 001055 376 NNG 378 (1171)
Q Consensus 376 ~~~ 378 (1171)
...
T Consensus 231 ~~~ 233 (283)
T PRK13636 231 AEK 233 (283)
T ss_pred cCH
Confidence 643
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=330.80 Aligned_cols=199 Identities=48% Similarity=0.802 Sum_probs=172.5
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------ecC
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 227 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 227 (1171)
.+.|++|+|+.+ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 57999999999999999999999999999999999999999885422 124
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
.++|++|++.+++.|++||+.++.....++..++++.+++.+.++..|.++.+.++....+|||||||||+|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 59999999998888999999987554555566778888888888888888888888888999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHH-HHh-hccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDR-CIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~-l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+++||||||++||+.+.+.+++. +++ ....|.|+|++||+.+++..+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998872 333 3345799999999999998899999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=334.24 Aligned_cols=466 Identities=20% Similarity=0.221 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCh-----hHHHHHHHhhhhhhhhhhHHH
Q 001055 505 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPL-----GRIINRFAKDLGDIDRNVAVF 579 (1171)
Q Consensus 505 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~-----G~ii~r~s~Di~~id~~~~~~ 579 (1171)
..+|..+..+.+.+...+.|+......+...-+-+.+.++.+.....|+..... -+.=+|+..|+...-.....+
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 345666666677777778888888888888888889999988877444433221 234479999988766544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 001055 580 VNMFMGQVSQLLSTFVLIGIVS---------------TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQF 644 (1171)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 644 (1171)
...++..+..+++...++.-.+ .++.|+++..++....+...+.+....+.-......+.+..-+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 4455555544444333332111 1122222111111111111222222222222222334445555
Q ss_pred HHHHccHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Q 001055 645 GEALNGLSTIRAYKAYDRMADINGKSMDKNI----RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720 (1171)
Q Consensus 645 ~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 720 (1171)
...-++...|-.|+.|....+.......... +........ .|.......++.++-++...-. ...+..+ +
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l-~~~~~gy~~~s~v~P~li~ap~-~f~g~i~----~ 322 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRL-TWFQLGYGWLSVVLPILIAAPR-YFSGQIT----F 322 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHHHHHHHhccHh-hhcCcCh----H
Confidence 6666778888888877655444443333222 222111111 1222222222222222221111 1111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCCcccCCCCCCCCCCCCccEEEEeeEE
Q 001055 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL------PSEAPLVIESNRPPPGWPSSGSIKFEDVVL 794 (1171)
Q Consensus 721 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~------~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~ 794 (1171)
.-+......+..+...++++...+..+.+..+.+.|+.++... +.+.+.... +........+..|+++|++.
T Consensus 323 -G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 323 -GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 0111111222233344555555556666677788888877532 111111100 00000011145699999999
Q ss_pred EeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc
Q 001055 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 874 (1171)
Q Consensus 795 ~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 874 (1171)
.-++.. +.|++.+|+|+|||.+-|.|+||||||||+|+|+|+++--+|+|..-. -..+-|+||.|.+-
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987654 789999999999999999999999999999999999999999986541 13588999999999
Q ss_pred cccHHhhccC-CC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCC
Q 001055 875 SGTVRFNLDP-FS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951 (1171)
Q Consensus 875 ~~tv~~nl~~-~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT 951 (1171)
.||+||-|.+ .. +.+|+++.++|.++++.++++++. +.+. -...||+||||||++||.|+++|++++|||+|
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~-~~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-EEDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh-ccCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 9999998863 22 268999999999999999999963 2222 34569999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEe
Q 001055 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 995 (1171)
Q Consensus 952 s~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~ 995 (1171)
|+||++++..+++.+++..++.|+|-|+||.....-.++.+-+.
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999989999999999987776666655543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=317.49 Aligned_cols=213 Identities=26% Similarity=0.448 Sum_probs=175.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.++++|++..|.. -++|++|||++++||+++|+|+||+||||||++|+|..+|.+|.+.. .+.
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 36899999999974 57999999999999999999999999999999999999998876542 234
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
.|+||||.-.+| +.||+||+..|......+ ......+++.++.+|... ...+.++.+|||||||.+||||||..+
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~---~~~~~~~e~v~~lFP~Lk-er~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDK---EAQERDLEEVYELFPRLK-ERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhccccc---ccccccHHHHHHHChhHH-HHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 699999999988 789999999874322110 000111333444455322 234667889999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcchH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGEL 380 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 380 (1171)
|++|+|||||.||-|...+.|++.+.+..++ |.||++|.++..+.- .+||.++|++|+|+.+|+.+++.+++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 9999999999999999999999988877654 679999999998865 5799999999999999999999877543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=335.71 Aligned_cols=200 Identities=24% Similarity=0.389 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 56999999999999999999999999999999999999999886422 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
+|++|++.++. .||+||+.++.. ... .++.+.++..++.+. .+....+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999998875 599999986421 111 122334444444332 23445689999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||+.+|++|||||||++||+.+++.+.+.+.+....++|+|++||+++++.. ||++++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999776655568999999999988765 79999999999999999887654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=372.07 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=178.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999753 59999999999999999999999999999999999999999999999988876666667788999
Q ss_pred EcCCccc--c-------cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 867 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 867 v~Q~~~l--f-------~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+||++.+ + ..|+++|+.... ..++++.++++.. |++...+....+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHHHHH
Confidence 9998743 2 347888775321 1122333344443 44444555667899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998754 6899999999999987 99999999999999999998864
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=354.27 Aligned_cols=190 Identities=24% Similarity=0.373 Sum_probs=161.9
Q ss_pred CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------e----cCcEEEEecCCCCCc
Q 001055 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I----RGTVAYVPQVSWIFN 240 (1171)
Q Consensus 177 ~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~----~~~i~~v~Q~~~l~~ 240 (1171)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. . +..|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457999999999999999999999999999999999999999886432 1 457999999999985
Q ss_pred -ccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 241 -ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 241 -~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
.||+|||.|+.. .+. ++..+.++..+|....+.. ..+|||||||||+|||||+.+|+++||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 799999998632 111 3345556666665554443 358999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||++|||.+++++.+.+.+... .++|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998877644 4899999999999875 5899999999999999999998765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=332.30 Aligned_cols=189 Identities=31% Similarity=0.532 Sum_probs=157.3
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-------cCcEEEEecCCC
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQVSW 237 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q~~~ 237 (1171)
++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+... +..++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6899999963 469999999999999999999999999999999999999998875431 346999999987
Q ss_pred C---CcccHHHHHhcCCCC--------C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 238 I---FNATVRDNILFGSAF--------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 238 l---~~~Tv~eni~~g~~~--------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
+ ++.||+||+.++... . .+++.++++..++.+..+. ...+||||||||++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 6 458999999875321 1 2344556666676654443 2358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 368 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~ 368 (1171)
+.+|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. ||++++|++| +++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999999999999999877665568999999999999875 7999999886 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=343.77 Aligned_cols=205 Identities=24% Similarity=0.425 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|++.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 257999999999999999999999999999999999999999885422
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCch-HHHhcCCCCCccccCCCCCccChHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|+| .++..||.|||.++.. ... +++.+.++.+++. ... .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 123599999998 4677899999987521 121 2334445555553 222 23456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||++|||||+.+|++|||||||++||+.+++++.+.+.+...+|.|+|++||+++++. .||++++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999987766556899999999999986 58999999999999999998
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 87654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=331.73 Aligned_cols=193 Identities=31% Similarity=0.457 Sum_probs=160.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 47999999999999999999999999999999999999999886432 12359999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.++ ..||+||+.++.. ... +++.+.++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 122 233444555565544333 33589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
.+|+++||||||++||+.+++++++.+.+... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998776544 48999999999998875 7999999999998764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=332.36 Aligned_cols=204 Identities=26% Similarity=0.446 Sum_probs=171.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|+...++++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 4699999999997433357999999999999999999999999999999999999999886432 1245
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
++|++|++.+++.||+||+.++... ....+.+..+...+...++.++.+..+.++....+|||||||||+|||||+.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999998888999999876432 222333333445566777777666566678888999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEE
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 365 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i 365 (1171)
+++||||||++||+.+++++.+.+.... +++|+|++||+++++..||+|++|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDWP-ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999776654 36899999999999988999999999863
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=331.96 Aligned_cols=196 Identities=23% Similarity=0.394 Sum_probs=161.7
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
|+++|++++|+... .+++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 78999999997421 126999999999999999999999999999999999999999886432 234699
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|++|++.++. .||+||+.+... .. .+++.+.++..++.+..+ ....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999998875 699999975321 11 123445566666654433 3446899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
|+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999877665568999999999998865 7999999999987653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=332.49 Aligned_cols=200 Identities=29% Similarity=0.502 Sum_probs=162.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
|+++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 47999999999999999999999999999999999999999886431 13459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCC--H---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSAFE--P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
+|+||++.++. .|++||+.++.... . ++....++.. ..++ ...+....+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999998875 59999998763211 1 1122222222 1111 123345578999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+.+|+++||||||++||+.+++.+++.+.+....++|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999877655568999999999998765 8999999999999999887654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=325.86 Aligned_cols=190 Identities=24% Similarity=0.403 Sum_probs=161.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999742 347999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+|++|++.+++.||+||+.+......+++.+.++ ++.....||||||||++|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999998889999998654333333222221 234567899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
++||||||++||+.+...+.+.+.+.. +++|+|++||+.+.+..+|++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999998776653 5899999999999988899999999999988765
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=316.28 Aligned_cols=205 Identities=24% Similarity=0.409 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.+..+|+.++|. .++++++|||+|++||+||+.||||+||||.+.++.|+.+|++|.+.. .|-.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 578999999996 468999999999999999999999999999999999999999987532 2335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC---CHH------HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSAF---EPA------RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~~---~~~------~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
|||+||++.+| ..||+|||...... +.. +.+..++..++.+.. ...+.+||||+|+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHH
Confidence 99999999999 68999999854221 111 122334444444433 3445799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcc-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||+.+|++++||||++|+||.+...|-+.+..+..+|..|+++-|+.. .++-|||.+++++|++..+|+++++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999998766666777999999999965 5788999999999999999999999887
Q ss_pred chH
Q 001055 378 GEL 380 (1171)
Q Consensus 378 ~~~ 380 (1171)
+..
T Consensus 230 ~~V 232 (243)
T COG1137 230 EDV 232 (243)
T ss_pred hhh
Confidence 543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=332.34 Aligned_cols=193 Identities=23% Similarity=0.399 Sum_probs=158.6
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------------
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------------- 225 (1171)
++++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996322 2479999999999999999999999999999999999999998864320
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..++|++|++.++ ..||+||+.++. ..+. +++.+.++..++.+..+ ....+|||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 14599999999887 579999998642 1221 23344555555544333 33468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 366 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 366 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+.+... .++|+|++|||++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999997766543 479999999999999889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=299.55 Aligned_cols=206 Identities=27% Similarity=0.359 Sum_probs=172.6
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
.|+++++++..+.. .-.+|++|+|.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++.+++-+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 48889998887542 236899999999999999999999999999999999999999999999999999888654 3
Q ss_pred h-hheEEEcCCccccc-ccHHhhccCC----CCCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 861 R-KILGIIPQSPVLFS-GTVRFNLDPF----SEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 861 r-~~i~~v~Q~~~lf~-~tv~~nl~~~----~~~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
| +++|+|+|...|.+ .|-.||...- .+.. .....+.++++ |+...+...+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~v-----------GLg~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV-----------GLGKRLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHh-----------CcccccccCccccCchHHHH
Confidence 4 56999999998875 4999998631 1111 11223334443 44455555567899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
|+||||+...|+||+-||||-+||.+|-+.|.+.|-.+. .+.|+++||||.....+|||++-|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998765 36899999999999999999999999999763
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=334.90 Aligned_cols=201 Identities=20% Similarity=0.365 Sum_probs=166.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|.+.. ....++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 789999999963 57999999999999999999999999999999999999999886432 1135999
Q ss_pred EecCCCC-CcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWI-FNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l-~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.+ +..|++||+.++.. ... ++..+.++..++... .+....+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999988 47899999986421 111 122333444444322 3445568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|+++||||||++||+.+++++.+.+.+... +|+|+|++||+++++..||++++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999998776543 58999999999999988999999999999999998877543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=371.86 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=178.0
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HHhhheEEE
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 867 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 867 (1171)
++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGV--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCE--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 36899999653 699999999999999999999999999999999999999999999999998765543 356789999
Q ss_pred cCCccccc-ccHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 868 PQSPVLFS-GTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 868 ~Q~~~lf~-~tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
||++.++. .|+++|+.+... ....+.. ..+.++++.+ |++...+....+|||||||||+|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998775 499999974311 1111111 1234455553 55555566778899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+|++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998875 47899999999999877 9999999999999999988763
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=337.32 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=168.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~~----------- 224 (1171)
+.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46999999999963 46999999999999999999999999999999999999874 664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|++.++..||+|||.++.. .+. ++...+++.+++.+.+. . ..+....+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 2345999999999888999999987631 111 22344455555432221 1 1234567999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
||||+|||||+.+|+++||||||++||+.+++++++.+.+.. +++|+|++||+++++.. |||+++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999777664 47899999999999865 8999999999999999998
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=338.12 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=168.5
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccce----------
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV---------- 224 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~---------- 224 (1171)
+|.|+++|++++|++ +++|+++||++++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 4 ~~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 4 PPKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CcEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 356999999999963 469999999999999999999999999999999999864 46665321
Q ss_pred ----ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 225 ----IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.+..++|++|++.+|..||+||+.++.. . . .+++...++.+++.+.+. +..+....+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 153 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGG 153 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 1346999999998887899999987521 1 1 123444555555543221 1234456789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|+++||||||++||+.++.++.+.+.+.. +++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999776653 47899999999999865 899999999999999998
Q ss_pred hHHhhc
Q 001055 372 EDLSNN 377 (1171)
Q Consensus 372 ~~l~~~ 377 (1171)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14242 233 EQIFTR 238 (253)
T ss_pred HHHHcC
Confidence 887543
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=326.11 Aligned_cols=195 Identities=23% Similarity=0.311 Sum_probs=162.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999998865 34567888999
Q ss_pred EcCCcccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.++ ..|+++|+.+.......+ ..+.+.++.+ ++....+....+||||||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGA-------VGITELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcch-------HHHHHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 99999887 469999987432111110 1233444443 2333344555689999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEE
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+..||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999864 47899999999999999997653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=332.27 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=162.7
Q ss_pred CcEEEEeeEEEcCCCCC-CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----e----------
Q 001055 161 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I---------- 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~-~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~---------- 225 (1171)
+.|+++|++++|++... +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 36999999999974221 35999999999999999999999999999999999999999886421 0
Q ss_pred --cCcEEEEecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 226 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 226 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
+..++|++|++.++. .|+.||+.++. ... .+++.+.++..++.+..+..+ .+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHH
Confidence 135999999998874 69999997642 111 234455666777665544333 589999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEE
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 367 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~ 367 (1171)
|++|||||+.+|+++||||||++||+.+.+++++.+.+... .|+|+|++||+++++..||++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999998776544 3889999999999998899999999999875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=340.59 Aligned_cols=206 Identities=28% Similarity=0.415 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCC---CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------e
Q 001055 162 AISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~---~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~ 225 (1171)
.++++|++++|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 357999999999999999999999999999999999999999885421 2
Q ss_pred cCcEEEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..+||+||+|. ++..||.+|+.|+.. .+ .+++.++++.+++....+..+ .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 346999999984 566799999988631 12 234556677777766555443 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
++|||||+.+|+++||||||++||+.++..+.+.+.+... .|.|+|++||+++++..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999997776544 489999999999998889999999999999999999886
Q ss_pred hcc
Q 001055 376 NNG 378 (1171)
Q Consensus 376 ~~~ 378 (1171)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 553
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=328.12 Aligned_cols=195 Identities=24% Similarity=0.344 Sum_probs=163.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 49999999999753 699999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEcCCcccccc-cHHhhccCCC---CC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|++|++.++.. |+++|+.+.. .. .++.+.+.++.. ++....+.....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988876 9999986421 11 112223333332 34444455567899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998764 46899999999999987 999999864
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=341.11 Aligned_cols=203 Identities=23% Similarity=0.358 Sum_probs=167.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
+.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3699999999996 357999999999999999999999999999999999999999885421 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..++|++|++.++. .||.||+.++. ..+. .++...++..++.+..+ ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 345999999998875 59999997641 1122 12333445555543322 2346899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999977765443 8999999999999875 799999999999999999988
Q ss_pred hhc
Q 001055 375 SNN 377 (1171)
Q Consensus 375 ~~~ 377 (1171)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=338.75 Aligned_cols=202 Identities=31% Similarity=0.450 Sum_probs=166.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999963 47999999999999999999999999999999999999999885421
Q ss_pred ---ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 225 ---IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.+..++|+||++.++ ..||+||+.++. .... +++.+.++..++... .+....+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 134699999999887 579999997641 1111 123334444444322 23345789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999776655568999999999999875 899999999999999998
Q ss_pred hHHhhc
Q 001055 372 EDLSNN 377 (1171)
Q Consensus 372 ~~l~~~ 377 (1171)
+++...
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=340.87 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=171.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC---Cccce------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---DASAV------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~---g~~~~------------~~ 226 (1171)
.|+++|++|.|+.. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++ |.+.. .+
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 3579999999999999999999999999999999999999987 43321 23
Q ss_pred CcEEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..|||++|++. +++.||+|||.++.. .+. +++.++++.+++....+..+ .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 46999999984 468899999987621 222 23455667777765544433 58999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|+++||||||++||+.+++++.+.+.+... .|+|+|++||+++++..|||+++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998776544 3899999999999998899999999999999999988765
Q ss_pred c
Q 001055 377 N 377 (1171)
Q Consensus 377 ~ 377 (1171)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=339.58 Aligned_cols=205 Identities=22% Similarity=0.341 Sum_probs=171.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|+....+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997433346999999999999999999999999999999999999999886432 23459
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|++. ++..||.|||.++.. ... +++..+++.+++....+. ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 567899999987521 122 234556666676554433 3358999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++++..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999987766544 8999999999999988999999999999999999887654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=341.49 Aligned_cols=200 Identities=28% Similarity=0.407 Sum_probs=165.8
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------ecC
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 227 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 227 (1171)
.++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 356999999999999999999999999999999999999999885422 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++ ..||+||+.++.. .. .+++.+.++..++.+..+..+ .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 699999999887 6799999986421 11 133455666677665554443 4899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998776543 48999999999998864 899999999999999999887653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=338.80 Aligned_cols=205 Identities=30% Similarity=0.441 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|+. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 46999999999963 2467999999999999999999999999999999999999999885421 2346
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++. ++..||+||+.++.. .+.+ +..+.++..++.+..+.. ..+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHH
Confidence 999999984 457899999987521 2222 234455666665544433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.+++.+++.+.+...+ ++|+|++||+++++..||++++|++|++++.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987765544 5899999999999888999999999999999998877654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.55 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=166.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCccce------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV------------ 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~~------------ 224 (1171)
+++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999963 46999999999999999999999999999999999999987 775421
Q ss_pred --ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 --IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..++|+||++.++..|++||+.++.. ... ++...+++..++...+. ...+....+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 1346999999999888999999987521 111 23344555556542110 112344578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|+++||||||++||+.++..+++.+.+... ++|+|+|||+++++.. ||++++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999987766543 4899999999998865 89999999999999999888
Q ss_pred Hhh
Q 001055 374 LSN 376 (1171)
Q Consensus 374 l~~ 376 (1171)
+..
T Consensus 230 ~~~ 232 (247)
T TIGR00972 230 IFT 232 (247)
T ss_pred HHh
Confidence 754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=334.05 Aligned_cols=201 Identities=29% Similarity=0.449 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCc
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 228 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 228 (1171)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 57999999999999999999999999999999999999999885421 1335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++.++ ..||+||+.++.. .+. +++.++++..++....+ ....+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 99999999887 5799999987521 111 22334455555543333 3346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.++.++.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999776655568999999999999875 899999999999999998887543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=330.27 Aligned_cols=199 Identities=27% Similarity=0.504 Sum_probs=164.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
|+++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999632 257999999999999999999999999999999999999999886432 1345999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.++ ..||+||+.++. .... +++.+.++..++.+..+ ....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 689999998642 1111 23445566666654333 23358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
+.+|+++||||||++||+.+.+++.+.+.+... ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999997766543 5899999999999875 899999999999999887654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=328.23 Aligned_cols=193 Identities=24% Similarity=0.414 Sum_probs=159.6
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------ecCcEEEEec
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------IRGTVAYVPQ 234 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------~~~~i~~v~Q 234 (1171)
++++|+++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999962 57999999999999999999999999999999999999999886542 1346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 235 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 235 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++.++. .||+||+.++.. .. .+++.+.++..++....+ ....+||||||||++|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 998874 699999976421 11 123344555555544332 33468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
|+++||||||++||+.+++++.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999877655568999999999999865 8999999999987653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=330.56 Aligned_cols=189 Identities=25% Similarity=0.452 Sum_probs=157.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999886421 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++ ..||+||+.++.. .. .+++.+.++..++.+..+.. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 699999999887 5799999987521 11 23445556666665443333 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 364 (1171)
||||+.+|+++||||||++||+.++.++.+.+.....+++|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999877655568999999999999875 79999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=335.39 Aligned_cols=203 Identities=27% Similarity=0.428 Sum_probs=165.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|++++|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999731 56999999999999999999999999999999999999999886432 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||++.++ ..||+||+.++.. .+. +++.+.++..++... ...+..+.+|||||||||+||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 999999887 5799999986521 111 223344455444320 01234457899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+.+|+++||||||++||+.+++++.+.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999998776544 38999999999998765 79999999999999998887754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=369.32 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=176.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 864 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999753 69999999999999999999999999999999999999999999999999875543 3457789
Q ss_pred EEEcCCcccccc-cHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988865 99999975311 1111111 1234455553 44444456677899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++++.. ||+|++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999875 47899999999999877 999999999999877653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=336.57 Aligned_cols=202 Identities=27% Similarity=0.433 Sum_probs=167.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 5899999999963 57999999999999999999999999999999999999999885321
Q ss_pred --------ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 225 --------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 225 --------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
.+..++|+||++.++. .||+||+.++. .... ++..+.++..++.... .+....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 1245999999999874 69999997642 1111 2333445555543322 123456
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
+||||||||++|||||+.+|+++||||||++||+.+++++++.+.+....|+|+|+||||++++.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999877665568999999999999986 8999999999999
Q ss_pred EecChhHHhh
Q 001055 367 EEGTFEDLSN 376 (1171)
Q Consensus 367 ~~g~~~~l~~ 376 (1171)
+.|+++++..
T Consensus 232 ~~~~~~~~~~ 241 (257)
T PRK10619 232 EEGAPEQLFG 241 (257)
T ss_pred EeCCHHHhhh
Confidence 9999888754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=334.56 Aligned_cols=204 Identities=20% Similarity=0.331 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC---CCCCccce------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAV------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~---~~~g~~~~------------~~ 226 (1171)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|.+.. .+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 579999999999999999999999999999999999984 57775431 23
Q ss_pred CcEEEEecCCCCCcccHHHHHhcCCCC-----C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVSWIFNATVRDNILFGSAF-----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~~Tv~eni~~g~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..|+|+||++.+|..||+||+.++... . .+++...++.+++...+.. .....+.+|||||||||
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 469999999999888999999875211 1 1234455666666443321 12345678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|+++||||||++||+.++.++.+.+.+.. +++|+|+|||+++++.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999776654 48999999999999864 79999999999999999888754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=338.57 Aligned_cols=201 Identities=23% Similarity=0.380 Sum_probs=166.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCc
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 228 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 228 (1171)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 57999999999999999999999999999999999999999885421 1245
Q ss_pred EEEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|+|++|++. ++..|+.+|+.++. ..+. +++..+++..++.+..+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 45678999998641 1122 22334555556544332 2346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.++.++.+.+.+...+|+|+|+|||+++++.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999877665568999999999999865 899999999999999998887654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=330.57 Aligned_cols=203 Identities=26% Similarity=0.375 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 36899999999963 57999999999999999999999999999999999999999885421 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC-CCHHH----HHHHHHHc-CchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGSA-FEPAR----YEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~~-~~~~~----~~~~~~~~-~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
.++|++|++.+|. .||.||+.++.. ..... ..++++.. ++.+ .......+||||||||++||
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHH
Confidence 5999999998875 699999987532 11111 12222222 1111 12234568999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .|||+++|++|++++.|+++++...
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999987766556899999999999876 4799999999999999999888643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=345.46 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEcCCCC----------CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------
Q 001055 161 PAISIRNGYFSWDSKA----------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~----------~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------ 224 (1171)
+.++++|++++|+.+. ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4699999999996321 246999999999999999999999999999999999999999885421
Q ss_pred ---------ecCcEEEEecCC--CCC-cccHHHHHhcCC-----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccC
Q 001055 225 ---------IRGTVAYVPQVS--WIF-NATVRDNILFGS-----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 283 (1171)
Q Consensus 225 ---------~~~~i~~v~Q~~--~l~-~~Tv~eni~~g~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 283 (1171)
.++.|+||+|+| .++ ..||.|||.++. ..+. ++..+.++..++... ..+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 235699999998 465 689999997531 1222 223344555555321 123
Q ss_pred CCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEe
Q 001055 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH 361 (1171)
Q Consensus 284 ~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~ 361 (1171)
....+|||||||||+|||||+.+|++||+||||++||+.++..+.+.+.+... .|.|+|+||||+.++.. ||||++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34468999999999999999999999999999999999999999998776654 38999999999999975 89999999
Q ss_pred CCEEEEecChhHHhhc
Q 001055 362 EGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 362 ~G~i~~~g~~~~l~~~ 377 (1171)
+|++++.|+.+++..+
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 237 LGHAVELGTYDEVYHN 252 (331)
T ss_pred CCEEEEEcCHHHHHcC
Confidence 9999999999998765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=333.00 Aligned_cols=200 Identities=28% Similarity=0.440 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999963 57999999999999999999999999999999999999999885432
Q ss_pred -ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|+|+||++.++ ..||.||+.++. .... +++.+.++..++....+ ....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHH
Confidence 123599999999887 469999996421 1111 22334445555544333 33468999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999776655568999999999999875 89999999999999998877
Q ss_pred Hh
Q 001055 374 LS 375 (1171)
Q Consensus 374 l~ 375 (1171)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=340.00 Aligned_cols=206 Identities=24% Similarity=0.424 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997421 146999999999999999999999999999999999999999886422
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHHH----HHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|+|++|++ .+++.||+||+.++.. .+.+. ..++++..++... .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 123599999997 5677899999987521 12222 2333444444321 12344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|++|||||||++||+.+++.+.+.+.+....++|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999877665558999999999999865 89999999999999999888
Q ss_pred Hhhc
Q 001055 374 LSNN 377 (1171)
Q Consensus 374 l~~~ 377 (1171)
+...
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=323.50 Aligned_cols=198 Identities=29% Similarity=0.461 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCC-------CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 786 SIKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~-------~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
.++++|+++.|+... ..+++||||+|++||++||||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 389999999996432 26899999999999999999999999999999999999999999999999986654
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.....+++.+.++.+++.+ ++. +...+|||||+||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~-----------ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLY-----------RYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhh-----------cCCcccCchhhhhHHHHHH
Confidence 1112345777777776543 333 4446899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+-+|+++++|||||+||.-.++.+.+.|.++.+ +-|.++||||++.+.. ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 9999999999999999999999999999988763 7899999999999998 999999999999999999999998888
Q ss_pred hHHHHHHhh
Q 001055 1015 SFSKMVQST 1023 (1171)
Q Consensus 1015 ~~~~~~~~~ 1023 (1171)
.|.+..-+.
T Consensus 204 pYTk~Ll~a 212 (268)
T COG4608 204 PYTKALLSA 212 (268)
T ss_pred HHHHHHHHh
Confidence 887665543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=368.61 Aligned_cols=213 Identities=23% Similarity=0.405 Sum_probs=177.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-Hhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 863 (1171)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCCe--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 7899999999643 699999999999999999999999999999999999987 7999999999998766554 4567
Q ss_pred eEEEcCCcccccc-cHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LSgGqkqrl~l 934 (1171)
|+||||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |+.... .....+|||||||||+|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988765 99999864321 1111111 1233445543 443322 34467899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+||||++++.. ||+|++|++|+++..|+++++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999998865 46899999999999987 999999999999999987765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=337.84 Aligned_cols=203 Identities=29% Similarity=0.446 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5889999999963 246999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|++. +++.||.||+.++. ..+. +++.+.++..++.+..+.. ...||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHH
Confidence 99999984 56789999998652 1222 2345556666666544433 358999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.+++.+++.+.....+ |.|+|++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999987765544 899999999999985 5899999999999999999988654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=340.75 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+.+. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 589999999997432 135999999999999999999999999999999999999999885421
Q ss_pred --ecCcEEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 --IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|++. ++..||+||+.++.. .... ++...++..++... ..+....+|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~Gq 155 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGGQ 155 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHHH
Confidence 1335999999984 567799999987531 1221 12233344443211 1234457899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||++|||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|+|||+++++.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987766544 48999999999998764 899999999999999998
Q ss_pred hHHhhcc
Q 001055 372 EDLSNNG 378 (1171)
Q Consensus 372 ~~l~~~~ 378 (1171)
+++.+..
T Consensus 236 ~~~~~~~ 242 (289)
T PRK13645 236 FEIFSNQ 242 (289)
T ss_pred HHHhcCH
Confidence 8876543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=334.76 Aligned_cols=201 Identities=26% Similarity=0.440 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4889999999963 57999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-----C---C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+|++|++.++. .|+.||+.++.. . . .+++..+++..++.+..+ .....||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHH
Confidence 99999998874 599999987521 0 1 123445566666654433 23468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+.....+|+|+|++||+++++.. ||++++|++|+++..|+.+++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999999999876655568999999999999865 79999999999999999888754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=330.96 Aligned_cols=201 Identities=21% Similarity=0.374 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999963 57999999999999999999999999999999999999999886432 1346
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++.++. .||.||+.++.. .+. .++.+.++..++... ......+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHH
Confidence 999999998875 699999987521 111 122333344343322 234457899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||||+.+|++|||||||++||+.+++++.+.+......|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999988776655568999999999988765 79999999999999999988754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=343.41 Aligned_cols=200 Identities=23% Similarity=0.434 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
.++++|++++|+ ++.+|+|+||++++||++||+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 478999999996 356999999999999999999999999999999999999999986532 234699
Q ss_pred EEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||++.++ ..||.||+.+.. ... .++..+.++..++.+..+ .....||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHH
Confidence 999999987 569999997532 111 233455555556554432 3346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+++|+++||||||+|||+.+++++++.+.... +++|+|++||+++++.. ||||++|++|++++.|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999776654 47999999999999875 89999999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=331.42 Aligned_cols=200 Identities=20% Similarity=0.350 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4889999999963 47999999999999999999999999999999999999999885432 1235
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCCCC---------------HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 229 VAYVPQVSWIFN-ATVRDNILFGSAFE---------------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 229 i~~v~Q~~~l~~-~Tv~eni~~g~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
++|++|++.++. .||+||+.++.... .+++...++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 999999998885 59999998753210 112233333333332 233455789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|+++||||||++||+.+++.+++.+.+... ++|+|++||+++++.. ||+|++|++|++++.|+.
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 99999999999999999999999999999999999997766543 6899999999999875 899999999999999998
Q ss_pred hHHhh
Q 001055 372 EDLSN 376 (1171)
Q Consensus 372 ~~l~~ 376 (1171)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=333.00 Aligned_cols=201 Identities=29% Similarity=0.430 Sum_probs=167.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4789999999963 57999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-C--C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSA-F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~-~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
+|++|++.+ +..||+||+.++.. . . ..+..++++..++.+..+ ....+|||||||||+|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999987 57899999987532 1 1 123445566666654333 234689999999999999
Q ss_pred Hhc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 001055 302 AVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 302 aL~------~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||+ .+|+++||||||++||+.+++.+.+.+.+.. ..|+|+|++||+++++. .||++++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999998777655 46899999999999987 589999999999999999888
Q ss_pred Hhh
Q 001055 374 LSN 376 (1171)
Q Consensus 374 l~~ 376 (1171)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=334.54 Aligned_cols=202 Identities=21% Similarity=0.364 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.++++|+++.|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5999999999963 57999999999999999999999999999999999999999885421 1234
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCCC----------------C---H---HHHHHHHHHcCchHHHhcCCCCCccccCCC
Q 001055 229 VAYVPQVSWIFN-ATVRDNILFGSAF----------------E---P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285 (1171)
Q Consensus 229 i~~v~Q~~~l~~-~Tv~eni~~g~~~----------------~---~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 285 (1171)
++|++|++.++. .||+||+.++... . . +++.+.++..++.. ..+..
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 899999999875 6999999875210 0 0 11222233333322 23455
Q ss_pred CCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCC
Q 001055 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEG 363 (1171)
Q Consensus 286 g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G 363 (1171)
..+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6789999999999999999999999999999999999999999987766544 8999999999999865 8999999999
Q ss_pred EEEEecChhHHhhc
Q 001055 364 MVKEEGTFEDLSNN 377 (1171)
Q Consensus 364 ~i~~~g~~~~l~~~ 377 (1171)
++++.|+.+++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999998887543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=376.36 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=85.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCC--CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEE
Q 001055 917 VSEAGENFSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 917 ~~~~~~~LSgGqkqrl~lArall~~p--~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
+++...+|||||-||+-||+.|=.+= =+++|||||.||-+.....+.+.|+++.. |.|||+|-||.++++.||+|+-
T Consensus 1381 L~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iid 1460 (1809)
T PRK00635 1381 LGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIH 1460 (1809)
T ss_pred ccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 34667899999999999999998763 47899999999999999999999999874 8999999999999999999999
Q ss_pred E------eCcEEEEecChhHHhh
Q 001055 994 L------DSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 994 l------~~G~i~~~g~~~el~~ 1010 (1171)
| ..|+|+.+|++++++.
T Consensus 1461 iGPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1461 LGPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred eCCCccCCCCEEEecCCHHHHhh
Confidence 8 4699999999999975
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=335.74 Aligned_cols=205 Identities=26% Similarity=0.380 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 469999999999742 346999999999999999999999999999999999999999885432 1335
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++. ++..|+.+|+.++.. ... ++...+++..++.+..+ ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 999999985 357799999987632 111 22334455555443332 3446899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|+|||+++++..||||++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998776544 38999999999999888999999999999999999887654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.67 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=158.0
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999963 257999999999999999999999999999999999999999886421 123
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++. .|++||+.++.. .. .+++.+.++.+++.+..+.. ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 5999999998875 799999987521 11 12344556666665544433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
||||+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|+|||+++++.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999877665568999999999999975 799999999863
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=323.64 Aligned_cols=193 Identities=25% Similarity=0.321 Sum_probs=162.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||++.|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .. .++.++|
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999998752 22 7888999
Q ss_pred EcCCcccc-cccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++|++.++ ..|+++|+.+.. ...+.++.+.++..++.+ .......+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988766 569999986432 122334555555555543 233344679999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
++|||||||++||+.+.+.+++.|++.. +++|+|++||+++++.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998864 47899999999999987 99987743
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=326.07 Aligned_cols=191 Identities=21% Similarity=0.378 Sum_probs=159.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
|+++|++|.|++ +++|+|+||++++| +++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 47999999999999 99999999999999999999999999886532 1346999
Q ss_pred EecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.+|. .||+||+.+.. ..+ .++..++++..++.+..+. ...+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 999998875 69999997631 111 2334556666666554332 3358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
+.+|+++||||||++||+.+++++.+.+.+... ++|+|+|||+++++.. +||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998766543 5899999999999875 7999999999988754
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=334.30 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~----------- 224 (1171)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+..
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999963 479999999999999999999999999999999999986 46664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|++.++..||+||+.++.. .+. ++..++++..++...+. ..++....+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 1346999999998888999999987521 122 23444555555532221 12344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||++|||||+.+|+++||||||++||+.+++.+.+.+.+.. +++|+|++||+++++.. +|++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999777654 47899999999999865 8999999999999999988
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=338.17 Aligned_cols=202 Identities=25% Similarity=0.441 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCc
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 228 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 228 (1171)
++++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 346999999999999999999999999999999999999999885421 1345
Q ss_pred EEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|+|++|++ .++..||.||+.++.. ... ++..++++.+++....+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999997 4678899999987521 111 23444556666543332 2346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.++.++.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999987766556899999999999987 5899999999999999999887654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=374.60 Aligned_cols=224 Identities=24% Similarity=0.347 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC----------
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA---------- 853 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~---------- 853 (1171)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 49999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-hheEEEcCCc--cccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcc---hhhhc
Q 001055 854 KFGLM---DLR-KILGIIPQSP--VLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSE 919 (1171)
Q Consensus 854 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~---~~~~~ 919 (1171)
..+.. .+| +.||||+|+| .++. .||.+|+.+.. .....+.. ..+.+.++.+ |+. ...+.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 12222 233 4799999998 5665 49999986421 11221111 1223344443 442 34566
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-C-CcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 920 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
...+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+||||++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 778999999999999999999999999999999999999999999999875 3 7899999999999877 999999999
Q ss_pred cEEEEecChhHHhhcCCChH
Q 001055 997 GRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 997 G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|+|++.|+++++...+...|
T Consensus 245 G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CeecccCCHHHhhcCCCChh
Confidence 99999999999976543333
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=350.73 Aligned_cols=205 Identities=26% Similarity=0.413 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCC---------------------CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 162 AISIRNGYFSWDSKAE---------------------RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~---------------------~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
.|+++|+++.|....+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 4788888888864321 1379999999999999999999999999999999999999988
Q ss_pred ccce----------------ecCcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCC
Q 001055 221 ASAV----------------IRGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPG 276 (1171)
Q Consensus 221 ~~~~----------------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~ 276 (1171)
.+.. .+..++|++|++.+| ..||+||+.++.. .. .++..+.++.+++.+..+..+
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 6432 124699999999987 5799999987531 12 133445666677655444433
Q ss_pred CCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-c
Q 001055 277 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-V 354 (1171)
Q Consensus 277 ~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~ 354 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+... .++|+|+||||++++.. |
T Consensus 163 ----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 163 ----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 58999999999999999999999999999999999999999998776543 48999999999999864 8
Q ss_pred CEEEEEeCCEEEEecChhHHhhc
Q 001055 355 DRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 355 d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999988654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=367.30 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=177.8
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCChH
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~~~ 858 (1171)
.++++||+++|+.. ..++|+|+||+|.+||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 23699999999999999999999999999999999999987 799999999999876644
Q ss_pred H---Hh-hheEEEcCCcc--ccc-ccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcch---hhhcCCCCC
Q 001055 859 D---LR-KILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA---QVSEAGENF 924 (1171)
Q Consensus 859 ~---~r-~~i~~v~Q~~~--lf~-~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~---~~~~~~~~L 924 (1171)
. .| +.+||+||++. ++. .|+++|+.+. ......+.. ..+.+.++.+ |++. ..+....+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 443 4888887521 111111111 1123333332 3322 245667889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+||||++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 37899999999999877 99999999999999
Q ss_pred ecChhHHhhcC
Q 001055 1002 YDTPEELLSNE 1012 (1171)
Q Consensus 1002 ~g~~~el~~~~ 1012 (1171)
.|+++++....
T Consensus 238 ~g~~~~~~~~~ 248 (529)
T PRK15134 238 QNRAATLFSAP 248 (529)
T ss_pred eCCHHHHhhCC
Confidence 99999987543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=335.53 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46999999999963 47999999999999999999999999999999999999999886532 1235
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC--------CC---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSA--------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~--------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
++|++|++.++ ..||.||+.++.. .. .+++...++.+++.+.++..+ .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 99999998765 5699999987521 01 223455666777765444333 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|+|+||||||++||+.+++.+.+.+..... .|+|+|++||+++++. .||++++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999987766544 3899999999999986 5899999999999999998887
Q ss_pred hh
Q 001055 375 SN 376 (1171)
Q Consensus 375 ~~ 376 (1171)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 54
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=330.30 Aligned_cols=199 Identities=28% Similarity=0.492 Sum_probs=162.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 47999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-C--C-HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSA-F--E-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~-~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|+||++.++. .|+.||+.++.. . . .+...++++..+. +. ...+....+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998875 599999987531 1 1 1122233333221 00 1123455789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
.+|+++||||||++||+.+++++.+.+.+... .++|+|++||+++++.. ||+++++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998776554 38999999999999985 899999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=326.85 Aligned_cols=189 Identities=33% Similarity=0.545 Sum_probs=155.2
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++++|++. ++++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999632 257999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 232 VPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 232 v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
++|++. ++..|++||+.++.. ... .+..+.++..++.+..+ ....+|||||||||+||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999984 467899999987521 121 23344555556554333 3346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCE
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 364 (1171)
|+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999877665558999999999999986 89999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=333.71 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=166.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------------ 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------------ 224 (1171)
|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 57999999999999999999999999999999999999999885421
Q ss_pred -------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCc
Q 001055 225 -------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 288 (1171)
Q Consensus 225 -------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~ 288 (1171)
.+..++|++|++.++ ..||.||+.++. .... +++.+.++..++.+..+ ....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 134699999999887 589999998742 1111 23344555555544333 33468
Q ss_pred cChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEE
Q 001055 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 366 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~ 366 (1171)
||||||||++|||||+.+|+++||||||++||+.++.++++.+.+... .|.|+|+|||+++++. .+||+++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998776544 3899999999999986 58999999999999
Q ss_pred EecChhHHhhc
Q 001055 367 EEGTFEDLSNN 377 (1171)
Q Consensus 367 ~~g~~~~l~~~ 377 (1171)
+.|+++++...
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99998887543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=334.21 Aligned_cols=208 Identities=18% Similarity=0.298 Sum_probs=166.7
Q ss_pred CCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccce---------
Q 001055 159 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV--------- 224 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~--------- 224 (1171)
+.+.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 18 ~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 18 KEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457999999999963 579999999999999999999999999999999999864 67775421
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCCCC----CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
.+..++|++|++.++..|++||+.++... .. +....+++..++...+. ...+....+|||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 167 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSG 167 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCH
Confidence 13469999999999878999999865211 11 12233344444421110 123455679999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 370 (1171)
|||||++|||||+.+|+++||||||++||+.+++++.+.+.+.. +++|+|++||+++++.. |||+++|++|++++.|+
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999998776654 46899999999998864 89999999999999999
Q ss_pred hhHHhhc
Q 001055 371 FEDLSNN 377 (1171)
Q Consensus 371 ~~~l~~~ 377 (1171)
.+++.++
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 8887643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=344.21 Aligned_cols=188 Identities=26% Similarity=0.414 Sum_probs=158.6
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEEEecCCCCC-cccHHH
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF-NATVRD 245 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~v~Q~~~l~-~~Tv~e 245 (1171)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|.+.. .+..+||+||++.++ ..||+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999986532 133599999999887 569999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001055 246 NILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318 (1171)
Q Consensus 246 ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~ 318 (1171)
|+.+... .. .++..++++..++.+..+ ....+|||||||||+|||||+.+|++|||||||+|
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 123455666666654333 23468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 319 LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||+.+++++++.+.+...+|+|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999877765568999999999999875 89999999999999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=326.60 Aligned_cols=197 Identities=21% Similarity=0.341 Sum_probs=166.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------cCcEEEEec
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQ 234 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q 234 (1171)
++++|++++|+. +++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+... ...++|+||
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 579999999999999999999999999999999999999999865321 135999999
Q ss_pred CCCCC-cccHHHHHhcCC---CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 235 VSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 235 ~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
++.++ ..|++||+.++. ..+..+..+.++..++.+..+. ...+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99887 579999997532 2234455666677776554332 33589999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++. .|||+++|++|++++.|++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999987766556899999999999986 489999999999999988754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=324.13 Aligned_cols=191 Identities=26% Similarity=0.448 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 478999999963 22 3999999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIFN-ATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~~-~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.++. .||+||+.++... ..+++.++++..++.+..+..+ .+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99999875 6999999875321 1234556667777765554433 489999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
.+|+++||||||++||+.++..+.+.+.+... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998776543 48999999999999876 8999999999988653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=327.63 Aligned_cols=192 Identities=22% Similarity=0.357 Sum_probs=158.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
|+++|+++.|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999886421 134
Q ss_pred cEEEEecCCCC-CcccHHHHHhcCC---CCCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWI-FNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l-~~~Tv~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.+ +..|++||+.++. ..+.+ ++.+.++..++.+..+ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 69999999987 4789999998752 12221 2334455555544333 2346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 367 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~ 367 (1171)
||||+.+|+++||||||++||+.+++.+++.+.....++.|+|++||+++++.. ||++++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999998777655568999999999999976 79999999999764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=333.85 Aligned_cols=206 Identities=26% Similarity=0.397 Sum_probs=166.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC--C---CCCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--P---VSDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~--~---~~g~~~~----------- 224 (1171)
+.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|.+..
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 46999999999963 479999999999999999999999999999999999987 3 4664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..+||+||++.++..||+||+.++.. .... +..++++..++.+.+. ...+....+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 1345999999999887899999987531 1111 2233344444432221 12345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||++|||||+.+|+++||||||++||+.++..+.+.+.+.. +++|+|+|||+++++.. |||+++|++|+++++|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999998776654 47899999999999865 7999999999999999999
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++..+
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 87644
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=306.20 Aligned_cols=212 Identities=28% Similarity=0.412 Sum_probs=185.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|+.+ .+++++|++|++|.+++|+||||||||||+.++.|++++++|+|.++|.++...+.+++.+.+++
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 7899999999765 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccc-cHHhhccCCC------CCCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS------EHSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~------~~~~---~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+-|+..+-.. ||++-+.|+. ..+. .-+.++++-.++. ..-++.-.+||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-----------~l~dryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-----------DLSDRYLDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-----------chHHHhHHhcccchhhhhhhhe
Confidence 9999987654 9998665421 1222 2245555554443 3333444679999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+.++.+.++||||.++||......+++.|+++.. ++|+++|-||..++.. +|+|+.|++|+++..|+|+|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999998764 7999999999999988 999999999999999999999864
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=331.77 Aligned_cols=195 Identities=27% Similarity=0.402 Sum_probs=161.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQV 235 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q~ 235 (1171)
++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 789999999963 57999999999999999999999999999999999999999987543 12358999999
Q ss_pred CCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 236 SWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 236 ~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+.++ ..||+||+.++.. ... +++.+.++..++.+..+ ....+||||||||++|||||+.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 9887 4799999986521 111 23445566666654333 234689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEe--CCEEEEecCh
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVH--EGMVKEEGTF 371 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 371 (1171)
++|||||||++||+.+++++.+.+.... ..|+|+|+|||+++++.. ||++++|+ +|+++++++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999876653 348999999999999865 79999998 5999887654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=325.17 Aligned_cols=200 Identities=25% Similarity=0.416 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
++++|++++|+. .+ .++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 789999999963 22 3899999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC----C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIFN-ATVRDNILFGSAF----E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~~-~Tv~eni~~g~~~----~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.++. .|+.||+.++... . .+++.+.++..++....+..+ ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99998875 6999999875211 1 234556677777766555444 489999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
.+|+++||||||++||+.+++.+.+.+..... .|+|+|++||+++++.. ||++++|++|++++.|+++++.+..
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999998776544 38899999999999875 7999999999999999998887553
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=333.44 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=167.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-----~~g~~~~----------- 224 (1171)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 4699999999996 35799999999999999999999999999999999999975 6774321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..++|++|++.++..|++||+.++.. .... +..++++.+++...+. ...+....+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 1345999999999888999999987521 1221 2334455554432111 123445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|||+|||||+.+|+++||||||++||+.++.++++.+.+.. +++|+|+|||+++++.. |||+++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999776654 47999999999999865 89999999999999999988
Q ss_pred Hhhc
Q 001055 374 LSNN 377 (1171)
Q Consensus 374 l~~~ 377 (1171)
+..+
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 7543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=322.16 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.++.. ..+..+.++++..++.++ .+....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999864321 112234555555554433 34445689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEE
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
++|||||||++||+.+.+.+++.|+++. .+.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999864 478999999998443 2566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=347.25 Aligned_cols=189 Identities=29% Similarity=0.411 Sum_probs=159.4
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------------------cCcEEEEecCCC
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------------RGTVAYVPQVSW 237 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------------------~~~i~~v~Q~~~ 237 (1171)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..- +..|+|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 468999999999999999999999999999999999999998854221 136999999999
Q ss_pred CCc-ccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 238 IFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 238 l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
+++ .||+||+.++.. .+. ++..++++..++.+..+.. ..+|||||||||+|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 985 899999997632 111 2344566666665544433 358999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||||++||+.+++.+.+.+.+...+ ++|+|+||||++++. .+|||++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999988776543 899999999999975 5899999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=346.90 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=180.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh-he
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 864 (1171)
.++++|++++|++- ++|+||||++.+||++||+|.||||||||+|+|+|.|+|++|+|.++|+++.-.++.+.++ .|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999864 7999999999999999999999999999999999999999999999999999888887655 59
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCH--HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~--~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+.|+|+..|++. ||.|||-+..+... .-+.+..-...+.+.+.++....+ .+....+||.||||.|+|||||..+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 999999999965 99999965433221 111111111223445555432211 4555678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
++||||||||++|+....+.+.+.++++. +|.++|+|||+++++.. ||||.||.||+.+..++
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999987 58999999999999988 99999999999998766
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1171 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-60 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-12 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-42 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 9e-05 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-42 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-04 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-05 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 6e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-41 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-41 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-41 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-06 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 6e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 9e-40 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-06 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-39 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-38 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-38 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-06 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-38 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 4e-06 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-38 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-06 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 4e-37 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-05 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-33 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-33 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-30 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-32 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-30 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-31 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-29 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 8e-31 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-30 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-30 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 6e-30 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 6e-30 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-30 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-30 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-29 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-29 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-29 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-28 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-22 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-21 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-21 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-20 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-13 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 4e-05 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-12 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-12 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-12 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-10 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 6e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-09 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-04 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 6e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 2e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 7e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 9e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1171 | |||
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-163 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-31 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-131 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-70 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-36 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-127 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 4e-34 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-127 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-36 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-124 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 6e-37 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-87 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-43 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-86 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-46 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-86 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-46 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 8e-77 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-38 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 6e-75 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-43 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-74 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 6e-31 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-73 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 8e-39 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 3e-70 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-34 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-69 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 8e-37 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-68 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-36 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-56 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-32 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-21 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 6e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-29 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 8e-23 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 8e-29 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 9e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-18 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-18 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 6e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-24 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-22 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-23 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-22 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-19 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 7e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-22 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-18 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-22 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-21 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-19 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-18 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 9e-12 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-16 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-15 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-09 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 2e-14 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 5e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 7e-14 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 9e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-13 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-11 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 4e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-07 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 3e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 5e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-04 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-04 |
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 488 bits (1257), Expect = e-163
Identities = 95/348 (27%), Positives = 182/348 (52%), Gaps = 9/348 (2%)
Query: 771 VIESN--RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 828
+IE++ + WPS G + +D+ +Y +L +SF+I P +VG++GRTG+GKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 829 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 888
++L+ R++ E G I IDG L RK G+IPQ +FSGT R NLDP + H
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948
SD ++W+ + L+ I + LD + + G S G +QL+ L+R++L ++KIL+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 949 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008
E +A +D T +I++T+++ F CT+++ R+ +++CD+ L+++ +V +YD+ EL
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1009 LSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQ 1068
F + N ++ A ++++ E + Q+ WL
Sbjct: 241 YHYPADRFVAGFIGSPKMNFLPVKVT---ATAIDQVQVELPMPNRQQVWLPVESRDVQVG 297
Query: 1069 YALAVSLTSSH---NDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHD 1113
+++ + H +D+ + +E + ++++ + + + +
Sbjct: 298 ANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQN 345
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-31
Identities = 62/296 (20%), Positives = 119/296 (40%), Gaps = 23/296 (7%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+++++ + L NI+ I G V ++G TG GK++L+SA L + +
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR----LLNT 73
Query: 222 SAVI---------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 266
I R +PQ +IF+ T R N+ +A K D
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVG 133
Query: 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
L+ ++ PG + + G +S G KQ + +AR+V S + + + D+P + LD +
Sbjct: 134 LRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQI 193
Query: 327 VFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT-FEDLSNNGELFQKLM 385
+ R ++ + T +L ++ + + D+ +++ E V++ + E + F
Sbjct: 194 I-RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 386 ENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQE 441
+ KM + + P N LP E S + S+ I+ E
Sbjct: 253 IGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVE-SRDVQVGANMSLGIRPE 307
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-131
Identities = 220/1075 (20%), Positives = 428/1075 (39%), Gaps = 91/1075 (8%)
Query: 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRK 66
+ T + L K + E+LAA+ V + + + N + K
Sbjct: 227 IWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIK 286
Query: 67 AQFLAACNSFILNSIPVLVTVVSF--GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPN 124
A + + ++F G ++ + + + T + F +
Sbjct: 287 KAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP 346
Query: 125 MITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP------AISIRNGYFSWDSKAER 178
I NA + + + + + I + SG + +N +FS+ S+ E
Sbjct: 347 NIEAFANARGAAYEVFKIIDNKPSI---DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEV 403
Query: 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV-------IR 226
L +NL + G VA+VG +G GK++ + M P+ D + +R
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLR 463
Query: 227 GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV--TSLQHD-LDLLPGGDVTEIG 283
+ V Q +F T+ +NI +G E ++ + +D + LP T +G
Sbjct: 464 EIIGVVSQEPVLFATTIAENIRYGR--EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG 521
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 343
ERG +SGGQKQR+++ARA+ N + + D+ SALD V + G+T ++
Sbjct: 522 ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAA-LDKAREGRTTIV 580
Query: 344 VTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELF------QKLMENAGKMEEY 394
+ H LS V D I G++ E+G ++L ++ Q E
Sbjct: 581 IA---HRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEA 637
Query: 395 VEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 454
+ K++ + +D + ++ + +++ ++ K + + + SF +
Sbjct: 638 CKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRI- 696
Query: 455 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLS------YWTDQSSLKTHGPLFYNTIY 508
K ++ + C + L+ + S S + ++ ++
Sbjct: 697 -LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLF 755
Query: 509 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFA 566
+L + + + KRL + S+LR + +F N G + R A
Sbjct: 756 LILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLA 815
Query: 567 KDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLLFYAAY 619
D V + + Q ++ I+S + W AI+P++ +
Sbjct: 816 NDA----AQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVE 871
Query: 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTL 679
+ S +K + S A EA+ T+ + + + +S+ R +
Sbjct: 872 MKMLSGQ-ALKDKKELEGSGKIAT--EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928
Query: 680 VNMGANRWLAIRLEIVGGLMIWLTA-TFAV----VQNGSAENQEAFASTMGLLLSYALNI 734
I +M + A F V + ++ A+ +
Sbjct: 929 K---KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFG-AMAV 984
Query: 735 TSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS--GSIKFEDV 792
+ + A + + + IE E I+S P+ G+++F V
Sbjct: 985 GQVSS----FAPDYAKATVSASHIIRIIEKTPE----IDSYSTQGLKPNMLEGNVQFSGV 1036
Query: 793 VLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF 850
V Y RP +P VL GLS + + +VG +G GKS+++ L R + G + +DG
Sbjct: 1037 VFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 851 DIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIR 907
+I + + LR LGI+ Q P+LF ++ N+ D S ++ A + A++ I
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID 1155
Query: 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIR 967
+ +V + G S GQ+Q ++++RAL+R+ IL+LDEAT+A+D ++ ++Q+ +
Sbjct: 1156 SLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD 1215
Query: 968 EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+ + T ++IAHRL+TI + D I+++ +G+V E+ T ++LL+ +G + MV
Sbjct: 1216 KAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-IYFSMVSV 1269
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 3e-70
Identities = 143/716 (19%), Positives = 299/716 (41%), Gaps = 70/716 (9%)
Query: 416 VDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDAL--------------- 460
++ + + + + K+++ + VS + RY L
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 461 GGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTI------YSLLSFG 514
G +++L+ V + + S ++ + + Y+ + G
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 515 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 574
++V + +++ ++ H+I+ + +F + +G + R D+ I+
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 575 NVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW-------AIMPLLLLFYAAYLYYQSTAR 627
+ + MF Q ++TF I+ W AI P+L L + S+
Sbjct: 181 GIGDKIGMFF----QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSF- 235
Query: 628 EVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 687
K L + ++ A+ E L + T+ A+ + + ++++ R +
Sbjct: 236 TDKELHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEAKRL---GIKKAIT 290
Query: 688 LAIRLEIVGGLMIWLTATFAV--------VQNGSAENQEAFASTMGLLLSYALNITSLLT 739
I + G + + A++A+ V + + +L+ A ++
Sbjct: 291 ANISM---GAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG-AFSVGQASP 346
Query: 740 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRY--R 797
+ A N+ A V I+ +S P G+++F+++ Y R
Sbjct: 347 NIEAFA----NARGAAYEVFKIIDNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSR 400
Query: 798 PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857
E+ +L GL+ + V +VG +G GKS+ + + R+ + G + IDG DI +
Sbjct: 401 KEVQ-ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV 459
Query: 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQ 916
LR+I+G++ Q PVLF+ T+ N+ E + ++ +A++ A+ D I + D
Sbjct: 460 RYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTL 519
Query: 917 VSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 976
V E G S GQ+Q ++++RAL+R KIL+LDEAT+A+D ++A++Q + + + T +
Sbjct: 520 VGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579
Query: 977 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVL 1036
+IAHRL+T+ + D I D G ++E +EL+ +G + K+V Q + +
Sbjct: 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKG-IYFKLVM------TQTAGNEIE 632
Query: 1037 GGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNN 1092
G K ++E +D + S + + + S+ H+ ++L ++ +
Sbjct: 633 LGNEACKSKDEIDNLDMSSK---DSGSSLIRRRSTRKSICGPHDQDRKLSTKEALD 685
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 4e-36
Identities = 86/427 (20%), Positives = 172/427 (40%), Gaps = 45/427 (10%)
Query: 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSK-VQNVRNDELS 62
V+ ++S K+ L+ + K + E + V E F++ Q+++ +
Sbjct: 870 VEMKMLSGQALKDKKELEGSGK---IATEAIENFRTVVSLTREQKFETMYAQSLQIPYRN 926
Query: 63 WFRKAQFLAACNSFILNSIPVLVTVVSF--GMFTLLGGDLTPARAFTSLSLFAVLRFPLF 120
+KA SF ++ +F G + + +T S +
Sbjct: 927 AMKKAHVFGITFSFT-QAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 121 MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP------AISIRNGYFSWDS 174
+ + A VS + + +I + T GL + F++ +
Sbjct: 986 QVSSFAPDYAKATVSASHIIRIIEKTPEI---DSYSTQGLKPNMLEGNVQFSGVVFNYPT 1042
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--------DASAV-- 224
+ P L ++L++ G +A+VG +G GK++++ + P++ + +
Sbjct: 1043 RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV 1102
Query: 225 --IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDL---LPGGDV 279
+R + V Q +F+ ++ +NI +G YE+ + + LP
Sbjct: 1103 QWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYN 1162
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGEL 336
T +G++G +SGGQKQR+++ARA+ + + D+ SALD + V D+
Sbjct: 1163 TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE--- 1219
Query: 337 SGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN-AGKME 392
G+T +++ H LS + D I+++ G VKE GT + L ++ ++ AG
Sbjct: 1220 -GRTCIVIA---HRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKR 1275
Query: 393 EYVEEKE 399
YV
Sbjct: 1276 SYVHHHH 1282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-127
Identities = 82/277 (29%), Positives = 140/277 (50%), Gaps = 4/277 (1%)
Query: 132 ANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIP 189
V ++ + F L + S + FS S P L +IN I
Sbjct: 3 TEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIE 62
Query: 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF 249
G L+A+ G TG GKTSL+ ++GEL P G +++ Q SWI T+++NI+
Sbjct: 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE-GKIKHSGRISFCSQNSWIMPGTIKENII- 120
Query: 250 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309
G +++ RY I L+ D+ D +GE G+ +SGGQ+ R+S+ARAVY ++D+
Sbjct: 121 GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180
Query: 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369
++ D P LD +++F+ C+ ++ KTR+LVT+++ L + D+I+++HEG G
Sbjct: 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 240
Query: 370 TFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDN 406
TF +L N F + +++ E+ + +
Sbjct: 241 TFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 4e-34
Identities = 58/278 (20%), Positives = 114/278 (41%), Gaps = 24/278 (8%)
Query: 754 AVERVGNYIELPSEAPL--VIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTI 811
+E V + E ++N S+ F + L PVL ++F I
Sbjct: 6 VMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLG----TPVLKDINFKI 61
Query: 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 871
+ + G TGAGK+S+L + +E G+I G I+ Q+
Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-RIS------------FCSQNS 108
Query: 872 VLFSGTVRFN-LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930
+ GT++ N + + + ++ L++ I + + + + E G S GQR
Sbjct: 109 WIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA 166
Query: 931 LLSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCD 989
+SL+RA+ + + + +LD +DV T + + + + + T +++ ++ + D
Sbjct: 167 RISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKAD 226
Query: 990 RILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAAN 1027
+IL+L G Y T EL + FS + + +
Sbjct: 227 KILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFD 263
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 388 bits (998), Expect = e-127
Identities = 112/234 (47%), Positives = 159/234 (67%), Gaps = 4/234 (1%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+I++RN F+W +++ PTL I IP G+LVA+VG G GK+SL+SA+L E+ V
Sbjct: 3 SITVRNATFTWA-RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE-G 60
Query: 222 SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
I+G+VAYVPQ +WI N ++R+NILFG E Y I +L DL++LP GD TE
Sbjct: 61 HVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTE 120
Query: 282 IGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI--RGELSGK 339
IGE+GVN+SGGQKQRVS+ARAVYSN+D+++FDDPLSA+DAHVG+ +F+ I +G L K
Sbjct: 121 IGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNK 180
Query: 340 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEE 393
TR+LVT+ + +L QVD II++ G + E G++++L F + +
Sbjct: 181 TRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYASHHH 234
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 59/250 (23%), Positives = 118/250 (47%), Gaps = 21/250 (8%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
SI + + PP L+G++F+IP V +VG+ G GKSS+L+ L ++ G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERAHL 902
+ I G +A +PQ + + ++R N L F + ++ L
Sbjct: 62 VAIKG-SVA------------YVPQQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACAL 106
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-DAL 961
+ G ++ E G N S GQ+Q +SL+RA+ + I + D+ +AVD +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 962 IQKTI--REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
+ I + K+ T +++ H ++ + D I+++ G++ E + +ELL+ +F++
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEF 225
Query: 1020 VQSTGAANAQ 1029
+++ + +
Sbjct: 226 LRTYASHHHH 235
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-124
Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 4/230 (1%)
Query: 156 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215
LT+ + + N W+ + P L +IN I G L+A+ G TG GKTSL+ ++GEL
Sbjct: 2 LTTT--EVVMENVTAFWE-EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 58
Query: 216 PPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLP 275
P G +++ Q SWI T+++NI+FG +++ RY I L+ D+
Sbjct: 59 EPSE-GKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFA 117
Query: 276 GGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335
D +GE G+ +SGGQ+ R+S+ARAVY ++D+++ D P LD +++F+ C+
Sbjct: 118 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 336 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385
++ KTR+LVT+++ L + D+I+++HEG GTF +L N F +
Sbjct: 178 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 6e-37
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 18/241 (7%)
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842
++ + E+V + PVL ++F I + + G TGAGK+S+L + +E
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 843 GRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN-LDPFSEHSDADL-WEALERA 900
G+I G I+ Q + GT++ N + F D ++
Sbjct: 63 GKIKHSG-RIS------------FCSQFSWIMPGTIKENII--FGVSYDEYRYRSVIKAC 107
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT-D 959
L++ I + + + + E G S GQR +SL+RA+ + + + +LD +DV T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019
+ + + + + T +++ ++ + D+IL+L G Y T EL + + SK+
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
Query: 1020 V 1020
+
Sbjct: 228 M 228
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 1e-87
Identities = 125/570 (21%), Positives = 244/570 (42%), Gaps = 36/570 (6%)
Query: 464 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTL--- 520
+ + ++ + + + + Y D + ++ G L
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIV 73
Query: 521 ------ANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDR 574
Y +S + + + + F+ N +G++I+R D+
Sbjct: 74 RPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKD 133
Query: 575 NVAVFVNMFMGQVSQLLSTFVLIGIVS-TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 633
+ + ++ ++ + ++L A+ Y + R++ R
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY-VFFGRLRKLTRER 192
Query: 634 SITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGKSMDKNIRYTLVNMGANRWLA 689
S + V E + G+S ++++ N + + +++T N + +
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 690 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 749
+I ++I + A A+ +GS T+G L ++ + L + RL +
Sbjct: 253 TVTDIGPIIVIGVGAYLAI--SGS--------ITVGTLAAFVGYLELLFGPLRRLVASFT 302
Query: 750 NSLNAV---ERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 806
+ +RV +L E + P G I + V +Y P+L
Sbjct: 303 TLTQSFASMDRV---FQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKD 359
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866
++ +I + V VG +G GKS+++N + R ++ G+ILIDG +I F LR +G+
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 867 IPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923
+ Q +LFS TV+ N+ P +D ++ EA + A+ D I G D +V E G
Sbjct: 420 VQQDNILFSDTVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 983
S GQ+Q LS++R L IL+LDEAT+A+D+ ++++IQ+ + K T LI+AHRL+
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 984 TIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
TI D+I+++++G ++E T EL++ +G
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAKQG 567
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 4e-43
Identities = 102/422 (24%), Positives = 178/422 (42%), Gaps = 57/422 (13%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMN----EILAAMDAVKCYAWENSFQSKVQNV 56
+FP + ++ + + + + E + + VK +A E++
Sbjct: 170 IFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKK 229
Query: 57 RNDELSWFRKAQFLAA----CNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLF 112
+ L+ K A + + + P++V G + + G +T +
Sbjct: 230 NTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIG--VGAYLAISGSITVGTLAAFVGYL 287
Query: 113 AVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP----AISIRNG 168
+L PL L T + + S+ R+ + + +E + N + I I +
Sbjct: 288 ELLFGPLRRLVASFTTLTQSFASMDRVFQLI--DEDYDIKNGVGAQPIEIKQGRIDIDHV 345
Query: 169 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAV 224
F ++ E P L +INL I G VA VG +G GK++LI+ L P V+ +
Sbjct: 346 SFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLIN-----LIPRFYDVTSGQIL 399
Query: 225 I-------------RGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 271
I R + V Q + +F+ TV++NIL G A E+ ++ + +
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR--PTATDEEVVEAAKMANAH 457
Query: 272 DL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 327
D LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD +
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 328 --FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 382
D + +T ++V H LS + D+I+++ G + E GT +L ++
Sbjct: 518 EALDVLSK----DRTTLIVA---HRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYE 570
Query: 383 KL 384
L
Sbjct: 571 HL 572
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 2e-86
Identities = 138/597 (23%), Positives = 255/597 (42%), Gaps = 50/597 (8%)
Query: 439 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 497
E+ +FK L Y + GL V I L+ +T +S L D+
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMIS---LLKPLLDEGFGN 58
Query: 498 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 555
+ + L F + L A+SY L S ++ + + + P+ FF
Sbjct: 59 AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ 118
Query: 556 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 611
G +++R D ++ + V + S L+ ++ S L I+
Sbjct: 119 ESTGGLLSRI---TYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175
Query: 612 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 661
++ +A KR I+R V + + L G + +Y
Sbjct: 176 PVVAFAISFV-------SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERK 228
Query: 662 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721
R ++ + ++ A+ + + + +++L A+ ++
Sbjct: 229 RFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL-ASVDSIRA---------E 278
Query: 722 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 778
T G + L+ + L S+ + A + + ++L +E
Sbjct: 279 LTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD---NGKYEA 335
Query: 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
+G + +DV Y+ + P L +SF+IP V +VGR+G+GKS++ N R
Sbjct: 336 E--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 896
+++ G I +DG D+ + L +LR+ ++ Q+ LF+ T+ N E++ + +A
Sbjct: 394 DVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQA 453
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
+AH + I GLD + E G + S GQRQ ++++RALLR + +L+LDEAT+A+D
Sbjct: 454 ARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513
Query: 957 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
++ IQ + E K+ T+L+IAHRL+TI D IL++D G ++E +LL+ +G
Sbjct: 514 ESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDG 570
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 5e-46
Identities = 95/418 (22%), Positives = 168/418 (40%), Gaps = 50/418 (11%)
Query: 1 MFPVQTFIIS----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 56
+ PV F IS R +K+++ ++L V Y + + + V
Sbjct: 174 VAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKV 233
Query: 57 RNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV 114
N K + ++ I L V+ + +LTP S
Sbjct: 234 SNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFG 293
Query: 115 LRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS 174
L PL L ++ ++ + + + + E + + +++ F++
Sbjct: 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQG 353
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---------------PVS 219
K E+P L +++ IP G VA+VG +G GK+++ + L V
Sbjct: 354 K-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN--L--FTRFYDVDSGSICLDGHDVR 408
Query: 220 DAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE-----KAIDVTSLQHD-LD 272
D +R A V Q +FN T+ +NI + + E R + + + ++
Sbjct: 409 DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHA----MEFIE 464
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FD 329
+P G T IGE G ++SGGQ+QRV++ARA+ ++ V I D+ SALD R + D
Sbjct: 465 NMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALD 524
Query: 330 RCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
+ KT +++ H LS + D I++V EG + E G DL + +L
Sbjct: 525 ELQK----NKTVLVIA---HRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = 4e-86
Identities = 134/597 (22%), Positives = 257/597 (43%), Gaps = 50/597 (8%)
Query: 439 KQEERETGVVSFKVLSRY-KDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLK 497
++ + +F+ L GL V I L+ ++T +S L D K
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLS---LLKPLLDDGFGK 58
Query: 498 THGPLFYNTIYSL--LSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT 555
T + + L + + + +SY + S + + ++ P+ FF
Sbjct: 59 TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK 118
Query: 556 NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS----LWAIMPL 611
G +++R D ++ + + V + S L ++ S + ++
Sbjct: 119 QSTGTLLSRI---TYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 612 LLLFYAAYLYYQSTAREVKRLDSITR------SPVYAQFGEALNGLSTIRAY----KAYD 661
++ A + KR SI++ V + L G + +
Sbjct: 176 PIVSIAIRVVS-------KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK 228
Query: 662 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721
R ++ K + ++ + ++ + + + +++ A+F V + +
Sbjct: 229 RFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA-ASFPSVMD---------S 278
Query: 722 STMGLLLSYALNITSLLTAVLRLASLAEN---SLNAVERVGNYIELPSEAPLVIESNRPP 778
T G + ++ +L+ + L ++ + A + + ++ E E R
Sbjct: 279 LTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVI 335
Query: 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
++G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R
Sbjct: 336 D--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEA 896
+++ G IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA
Sbjct: 394 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 453
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
A+ D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D
Sbjct: 454 ARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 957 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
++ IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG 570
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 174 bits (444), Expect = 4e-46
Identities = 99/414 (23%), Positives = 174/414 (42%), Gaps = 42/414 (10%)
Query: 1 MFPVQTFIIS----RMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNV 56
+ P+ + I R + ++K + ++L V + + + V
Sbjct: 174 LAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKV 233
Query: 57 RNDELSWFRKAQFLAACNSFILNSIP--VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAV 114
N K ++ + I+ I L V+ F + LT S
Sbjct: 234 SNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIA 293
Query: 115 LRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDS 174
L PL L N+ Q + + + L +E++ + + RN F++
Sbjct: 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPG 353
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---------------PVS 219
+ E P L NINL IP G VA+VG +G GK+++ S L + +
Sbjct: 354 R-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS--L--ITRFYDIDEGHILMDGHDLR 408
Query: 220 DAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPG 276
+ + A +R VA V Q +FN TV +NI + + + E+A + ++ +
Sbjct: 409 EYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN 468
Query: 277 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIR 333
G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R + D +
Sbjct: 469 GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528
Query: 334 GELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
+T +++ H LS + D I++V +G++ E GT +L ++ +L
Sbjct: 529 ----NRTSLVIA---HRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 259 bits (663), Expect = 6e-75
Identities = 129/527 (24%), Positives = 233/527 (44%), Gaps = 55/527 (10%)
Query: 510 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 569
+++ + + + + +S L + +L + + +I R D+
Sbjct: 71 IVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDV 130
Query: 570 GDIDRNVAVFVNMFMGQVSQLLSTFVLIG-------IVSTMSL--WAIMPLL-----LLF 615
+ V M + V + + + +G I +S ++P + L
Sbjct: 131 ----TQLQNLVMMLLRIV--VRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184
Query: 616 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNI 675
++ ++ + R E L G +R +A+ R N N
Sbjct: 185 KKGNPLFRKIQESTDEVNRVVR--------ENLLG---VRVVRAFRREEYENENFRKANE 233
Query: 676 RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGL-----LLSY 730
+ A + L + + I AV+ G + M + +Y
Sbjct: 234 SLRRSIISAFSLIVFALPLF--IFIVNMGMIAVLWFGG---VLVRNNQMEIGSIMAYTNY 288
Query: 731 ALNIT---SLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSI 787
+ I ++ +L A S +RV E+ +E P + E++ GS+
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASA---KRVL---EVLNEKPAIEEADNALALPNVEGSV 342
Query: 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847
FE+V RY PVL G++F++ P V ++G TG+GKS+++N + R+++ ERGR+ +
Sbjct: 343 SFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 848 DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKD 904
D D+ L DLR + +PQ VLFSGT++ NL + +D ++ EA + A + D
Sbjct: 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--DATDDEIVEAAKIAQIHD 460
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
I G D++V G NFS GQ+Q LS++RAL+++ K+L+LD+ T++VD T+ I
Sbjct: 461 FIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILD 520
Query: 965 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011
++ K CT II ++ T + D+IL+L G+V + T +ELL +
Sbjct: 521 GLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 4e-43
Identities = 96/403 (23%), Positives = 186/403 (46%), Gaps = 39/403 (9%)
Query: 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDEL-SWFR 65
++ + L ++ + TD+ ++ E L + V+ + E + N+ L
Sbjct: 182 WLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA-NESLRRSII 240
Query: 66 KAQFLAACNS----FILNSIPVLVTVVSFGMFTLLGGDLTPAR--AFTS---LSLFAVLR 116
A L FI+N ++ V+ FG + + A+T+ +F+++
Sbjct: 241 SAFSLIVFALPLFIFIVNM--GMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLM- 297
Query: 117 FPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL--PAISIRNGYFSWDS 174
M+ N++ +V A+ S KR+ E L + I + L ++S N F +
Sbjct: 298 ----MIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRY-F 352
Query: 175 KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS-------AMLGEL----PPVSDAS- 222
+ P L +N + GSLVA++G TG GK++L++ G + V
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412
Query: 223 AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSL-QHD--LDLLPGGDV 279
+RG ++ VPQ + +F+ T+++N+ +G E A ++ ++ + Q + LP G
Sbjct: 413 KDLRGHISAVPQETVLFSGTIKENLKWGR--EDATDDEIVEAAKIAQIHDFIISLPEGYD 470
Query: 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339
+ + G N SGGQKQR+S+ARA+ V I DD S++D +++ ++ G
Sbjct: 471 SRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRIL-DGLKRYTKGC 529
Query: 340 TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 382
T ++T ++ D+I+++HEG V GT ++L + + ++
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYR 572
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 2e-74
Identities = 151/598 (25%), Positives = 262/598 (43%), Gaps = 79/598 (13%)
Query: 450 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 509
L + + ++++ + ++ L V S + D + L +
Sbjct: 29 LGYLRPHT------FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLI 82
Query: 510 LLSF--GQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAK 567
L + L+ ++ S RL + + R P+ FF P G II+R
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRV-- 140
Query: 568 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM-------SLWAIMPLLLLFYAAYL 620
+ D+D N+ + + Q L G V M SL + + L +
Sbjct: 141 -INDVD-NINNVLGNSIIQF--FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 621 -------YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAY----KAYDRMADINGK 669
Y+ R + +L+ E ++GL+ I+ + K ++ +N
Sbjct: 197 VSSQTRKYFYENQRVLGQLN--------GIIEEDISGLTVIKLFTREEKEMEKFDRVNES 248
Query: 670 ---SMDKNIRYT-----LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721
K ++ L+NM N A+ + GG +
Sbjct: 249 LRKVGTKAQIFSGVLPPLMNMVNNLGFAL-ISGFGGWL---------ALKDII------- 291
Query: 722 STMGLL---LSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778
T+G + + Y+ T L + ++ + +L + ER+ ++L E + +
Sbjct: 292 -TVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVE 347
Query: 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
G I+F++V Y + PVL ++F I P KV +VG TG+GK++++N L R
Sbjct: 348 LR-EVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWE 895
+++RG+IL+DG DI K LR +GI+ Q +LFS TV+ NL +P +D ++ E
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEIKE 463
Query: 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
A + H I+ G + +++ GE+ S GQRQLL+++RA L KIL+LDEAT+ VD
Sbjct: 464 AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
Query: 956 VRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
+T+ IQ + + + T +IIAHRLNTI + D I++L G ++E +EL+ G
Sbjct: 524 TKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRG 581
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 6e-31
Identities = 96/412 (23%), Positives = 179/412 (43%), Gaps = 63/412 (15%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMN----EILAAMDAVKCYAWENSFQSKVQNV 56
+ + S+ +K E + + +G +N E ++ + +K + E K V
Sbjct: 190 TVLITQIVSSQTRKYFYE--NQ--RVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRV 245
Query: 57 RNDEL--SWFRKAQFLAA----CNSFILNSIPVLVTVVSFGMFTLLG----GDLTPARAF 106
N+ L KAQ + + + N L++ G L G + F
Sbjct: 246 -NESLRKVGT-KAQIFSGVLPPLMNMVNNLGFALISGFG-GWLALKDIITVGTIA---TF 299
Query: 107 TSLS-LFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP-AIS 164
S F PL L N + A S +R+ E L EE+ P+ + I
Sbjct: 300 IGYSRQFT---RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIE 356
Query: 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GELP- 216
+N +FS+D ++P L +I I G VA+VG TG GKT++++ ++ G++
Sbjct: 357 FKNVWFSYD--KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414
Query: 217 ---PVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLD 272
+ + +R ++ V Q + +F+ TV++N+ +G+ A E+ + L H D
Sbjct: 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN--PGATDEEIKEAAKLTH-SD 471
Query: 273 ----LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 327
LP G T + + G ++S GQ+Q +++ RA +N + I D+ S +D + +
Sbjct: 472 HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531
Query: 328 --FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 374
+ + GKT +++ H L+ + D II++ +G + E G ++L
Sbjct: 532 AAMWKL----MEGKTSIIIA---HRLNTIKNADLIIVLRDGEIVEMGKHDEL 576
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 4e-73
Identities = 85/266 (31%), Positives = 142/266 (53%), Gaps = 9/266 (3%)
Query: 751 SLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFT 810
+E + +L E V + P G I+FE+V Y L +SFT
Sbjct: 21 MFIDMENM---FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFT 76
Query: 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQS 870
+ P + +VG +GAGKS++L LFR ++ G I IDG DI++ LR +G++PQ
Sbjct: 77 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD 136
Query: 871 PVLFSGTVRFNL---DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927
VLF+ T+ N+ + ++ A + A + DAI G QV E G S G
Sbjct: 137 TVLFNDTIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194
Query: 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 987
++Q ++++R +L+ I++LDEAT+A+D + IQ ++ + + T +++AHRL+T+++
Sbjct: 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254
Query: 988 CDRILLLDSGRVLEYDTPEELLSNEG 1013
D+IL++ G ++E E LLS G
Sbjct: 255 ADQILVIKDGCIVERGRHEALLSRGG 280
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 8e-39
Identities = 74/287 (25%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 118 PLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLTSGLPAISIRNGYFSWDSK 175
++ + + + ++ M + L E ++ LP PL I N +FS+
Sbjct: 7 HHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD- 65
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------- 225
R TL +++ + G +A+VG +G GK++++ +L +S I
Sbjct: 66 -GRETLQDVSFTVMPGQTLALVGPSGAGKSTILR-LLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 226 ---RGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
R + VPQ + +FN T+ DNI +G +A E A + + P G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN-DEVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340
++GERG+ +SGG+KQRV++AR + + + D+ SALD R + + + +T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRT 241
Query: 341 RVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQKL 384
++V H LS V D+I+++ +G + E G E L + G ++ +
Sbjct: 242 TIVVA---HRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 234 bits (599), Expect = 3e-70
Identities = 82/240 (34%), Positives = 141/240 (58%), Gaps = 5/240 (2%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G+
Sbjct: 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERAH 901
+LIDG D+A LR+ +G++ Q VL + ++ N+ +P S + A + A
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP--GMSVEKVIYAAKLAG 123
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
D I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021
I + + + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-34
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 31/234 (13%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
I+ RN F + + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 7 DITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 220 ------DASAV----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ- 268
D + +R V V Q + + N ++ DNI + EK I L
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAG 123
Query: 269 -HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
HD + L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD
Sbjct: 124 AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 327 V---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDL 374
+ + + G+T +++ H LS V DRII++ +G + E+G ++L
Sbjct: 184 IMRNMHKICK----GRTVIIIA---HRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 229 bits (587), Expect = 9e-69
Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 7/231 (3%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL----DPFSEHSDADLWEALERAHL 902
IDG I L + R +G + Q + +GT+R NL + +++D DLW+ L+ A
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG--DYTDEDLWQVLDLAFA 118
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
+ + L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 963 QKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEG 1013
QK + K T L+IAHRL+TI+D D+I ++ G++ EL++
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP 229
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 8e-37
Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 29/242 (11%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-------GEL 215
+S R+ F++D L +I+ + S++A G +G GK+++ S + GE+
Sbjct: 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 216 ----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSLQ 268
P+ + S R + +V Q S I T+R+N+ +G + + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV- 327
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 328 --FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 382
D ++ G+T +++ H LS + D+I + +G + G +L L+
Sbjct: 180 KALDSLMK----GRTTLVIA---HRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA 232
Query: 383 KL 384
K
Sbjct: 233 KY 234
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 228 bits (584), Expect = 4e-68
Identities = 81/241 (33%), Positives = 140/241 (58%), Gaps = 8/241 (3%)
Query: 785 GSIKFEDVVLRYRPELP-PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
+I+F DV Y + L ++F IP +VG TG+GKS++ L+R + E G
Sbjct: 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-G 74
Query: 844 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL---DPFSEHSDADLWEALERA 900
I I G ++ K+ +R I+GI+PQ +LF+ T+++N+ + +D ++ +A + A
Sbjct: 75 DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKL--DATDEEVIKATKSA 132
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
L D I D V G S G+RQ ++++R LL+ KI++ DEAT+++D +T+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020
L QK + + K+ T++IIAHRL+TI + I+LL+ G+++E T ++LL G +++M
Sbjct: 193 LFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNG-EYAEMW 251
Query: 1021 Q 1021
Sbjct: 252 N 252
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 67/242 (27%), Positives = 119/242 (49%), Gaps = 27/242 (11%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML------GE- 214
I + FS+ + TL +IN IP G+ A+VG TG GK+++ + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76
Query: 215 ------LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268
+ + S IR + VPQ + +FN T++ NIL+G A E+ I T
Sbjct: 77 KIGGKNVNKYNRNS--IRSIIGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSA 132
Query: 269 HDLDL---LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGR 325
D LP T +G +G+ +SGG++QR+++AR + + + IFD+ S+LD+
Sbjct: 133 QLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 326 QVFDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKEEGTFEDLSNNGELFQ 382
+ + +T +++ H LS + + IIL+++G + E+GT +DL +
Sbjct: 193 LF-QKAVEDLRKNRTLIIIA---HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYA 248
Query: 383 KL 384
++
Sbjct: 249 EM 250
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 1e-56
Identities = 75/244 (30%), Positives = 124/244 (50%), Gaps = 8/244 (3%)
Query: 784 SGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE 841
G +KF+DV Y P + VL GL+FT+ P +VG G+GKS++ L + +
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQ-VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 842 RGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD--PFSEHSDADLWEALER 899
G++L+DG + ++ L + + Q P+LF + R N+ + ++
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
+ D I G D +V E G S GQRQ ++L+RAL+R+ ++L+LD AT+A+D
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 960 ALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
+Q+ + E E+ S T+L+I +L+ IL L G V E T +L+ G +
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG-CYR 251
Query: 1018 KMVQ 1021
MV+
Sbjct: 252 SMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-34
Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 33/259 (12%)
Query: 155 PLTSGLP------AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI 208
PL+ L + ++ F++ + L + + G + A+VG G GK+++
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 209 SAML-------GEL----PPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 256
+ + G++ P+ + VA V Q +F + R+NI +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLT-RTP 121
Query: 257 RYEKAIDVTSLQ--HD-LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 313
E+ V HD + P G TE+GE G +SGGQ+Q V++ARA+ + I D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 314 DPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLHFLSQV---DRIILVHEGMVKE 367
+ SALDA +V E + +T +L+T LS I+ + EG V E
Sbjct: 182 NATSALDAGNQLRVQRLLYESP--EWASRTVLLIT---QQLSLAERAHHILFLKEGSVCE 236
Query: 368 EGTFEDLSNNGELFQKLME 386
+GT L G ++ ++E
Sbjct: 237 QGTHLQLMERGGCYRSMVE 255
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 33/246 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ + + + + +L +S+ I DK + G GAGK+++LN L G +
Sbjct: 22 IQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 847 IDGFDIAKFG--LMDLRKILGIIPQS---PVLFSGTVR--------FNLDPFSEHSDADL 893
+ G K G +R+ +G + S V ++ + + D
Sbjct: 80 LFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR 139
Query: 894 WEA---LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950
EA L+ + ++ L S G++Q + ++RAL+ + ++L+LDE
Sbjct: 140 NEAHQLLKLVGMSAKAQQYIGYL-----------STGEKQRVMIARALMGQPQVLILDEP 188
Query: 951 TAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006
A +D + + + + M+ + H + I +ILLL G+ ++ E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 1007 ELLSNE 1012
++L++E
Sbjct: 249 DILTSE 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 35/240 (14%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
I + + L I+ I G + G G GKT+L++ + P S
Sbjct: 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 221 ASAV--------------IRGTVAYVPQ---VSWIFNATVRDNILFGSAFEPARYEKAID 263
+ +R + +V + V D ++ G+ Y+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQD--- 133
Query: 264 VTSLQHD-----LDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLS 317
+ + L L+ ++ ++ + +S G+KQRV +ARA+ V I D+P +
Sbjct: 134 IDDEIRNEAHQLLKLV---GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 318 ALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374
LD + + + VT+ + ++ +I+L+ +G ++G ED+
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
A+S+ N F + ++ +N D+ G ++A++G G GK++L+ +LG P+
Sbjct: 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ- 59
Query: 221 ASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-----SAFEPARYEKAIDVTSLQHDLDLL 274
+ ++ +VPQ S F +V D +L G + F K+ D LD L
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTF---AKPKSHDYQVAMQALDYL 116
Query: 275 PGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333
++T + +R +SGGQ+Q + +ARA+ S + + D+P SALD V +
Sbjct: 117 ---NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS--LL 171
Query: 334 GELS---GKTRVLVTNQLHFLSQV----DRIILVHEGMV 365
+L+ T V T H +QV ++ +L+++
Sbjct: 172 IDLAQSQNMTVVFTT---HQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 51/242 (21%), Positives = 117/242 (48%), Gaps = 41/242 (16%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
++ E++ Y+ E + L+F + D + ++G+ G GKS++L+ L I +G+I
Sbjct: 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 846 LIDGFDIAKFGLMDLRKILGIIPQSPVL-FSGTV-------RF-NLDPFSEHSDADL--- 893
++ + +G +PQ F+ +V R +++ F++ D
Sbjct: 63 -------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 894 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953
+AL+ +L +R + + S GQRQL+ ++RA+ K+++LDE T+A
Sbjct: 110 MQALDYLNLTHLAKR-------EFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 954 VDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
+D+ ++ + + + ++ T++ H+ N ++ ++ LLL+ + ++ +L+
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN-KQNFKFGETRNILT 217
Query: 1011 NE 1012
+E
Sbjct: 218 SE 219
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-29
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IVELER 842
+K E++ Y + L G++ I + I+G G GKS TLF+ I++
Sbjct: 8 LKVEELNYNY-SDGTHALKGINMNIKRGEVTAILGGNGVGKS----TLFQNFNGILKPSS 62
Query: 843 GRILIDGFDIA--KFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHSDA 891
GRIL D I + G+M LR+ +GI+ Q P LFS +V F N+ E
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPED--- 118
Query: 892 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
E +R +A++R G++ + S GQ++ ++++ L+ K+L+LDE T
Sbjct: 119 ---EIRKRV--DNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171
Query: 952 AAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
A +D + I K + E + T++I H ++ + CD + ++ GRV+ P+E+
Sbjct: 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
Query: 1009 LSNE 1012
+ +
Sbjct: 232 FAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 8e-23
Identities = 60/283 (21%), Positives = 110/283 (38%), Gaps = 60/283 (21%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS- 219
+ + +++ L IN++I G + AI+GG G GK++L G L P S
Sbjct: 6 YILKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 220 -------------DASAVIRGTVAYV---P--QVSWIFNATVRDNILFG------SAFE- 254
+R ++ V P Q +F+A+V ++ FG E
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ---LFSASVYQDVSFGAVNMKLPEDEI 120
Query: 255 PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314
R + A+ T ++H D +S GQK+RV++A + V I D+
Sbjct: 121 RKRVDNALKRTGIEHLKDKPT-----------HCLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 315 PLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT- 370
P + LD ++ ++ E G T ++ T+ + + D + ++ EG V +G
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 371 ---FED---LSNNG-------ELFQKLMENAGKMEEYVEEKED 400
F + + L + L E G + + ++E
Sbjct: 229 KEVFAEKEVIRKVNLRLPRIGHLMEILKEKDGFVFDELDEGHH 271
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 786 SIKFEDVVLRYRPELP---PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR----IV 838
I+ +V + P L +S I + + + G TG+GKS TL + ++
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKS----TLLQIVAGLI 57
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVR----F---NLDPFSEHS 889
E G +L DG ++R+ +GI Q P F+ V F N P
Sbjct: 58 EPTSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP-DR-- 111
Query: 890 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
+ + K A+ L D+ S G+++ ++++ ++ IL+LDE
Sbjct: 112 -----DPVPLV--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164
Query: 950 ATAAVDVRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007
+D + + + + + T+++I+H + T+I+ DR+++L+ G+ + T E
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 1008 LLSN 1011
L
Sbjct: 225 FLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-25
Identities = 55/246 (22%), Positives = 97/246 (39%), Gaps = 43/246 (17%)
Query: 162 AISIRNGYFSWD--SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 219
I + N + + E+ L N++L I G + + G TG GK++L+ + G + P S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 220 DASAV---------IRGTVAYV---P--QVSWIFNATVRDNILFG------SAFEPARYE 259
IR + P Q F V D + F +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQ---FFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 260 KAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
KA++ L D +R +SGG+K+RV++A + D+ I D+PL
Sbjct: 119 KAMEFVGL----------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168
Query: 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL 374
LD + + + GKT +L++ H + V DR++++ +G +GT +
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILIS---HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 375 SNNGEL 380
+
Sbjct: 226 LEKYDP 231
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 3e-28
Identities = 55/256 (21%), Positives = 119/256 (46%), Gaps = 28/256 (10%)
Query: 772 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS--- 828
+ S++ G++ +D+ R + +L G+SF I + G++G GAGK+
Sbjct: 1 MGSDKIHHHHHHMGAVVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTL 58
Query: 829 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE 887
+++TL + G + + G ++ + ++RK++ +P+ + L
Sbjct: 59 RIISTLIKPSS---GIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFV-- 112
Query: 888 HSDADLWEALERAHLKDAIRR--NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945
A + A + +++ + R GL ++ + +S G + L ++RAL+ ++
Sbjct: 113 ---AGFY-ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 946 VLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-----CDRILLLDSGRV 999
+LDE T+ +DV ++K +++ + T+L+ +H + CDRI L+ +G +
Sbjct: 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH----NMLEVEFLCDRIALIHNGTI 224
Query: 1000 LEYDTPEELLSNEGSS 1015
+E T EEL +
Sbjct: 225 VETGTVEELKERYKAQ 240
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVAY 231
I+ +I G + ++G G GKT+ + + + P V + +R ++Y
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92
Query: 232 VPQVSWIF-NATVRDNILF-------GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+P+ + + N + + F S+ E+A ++ L +
Sbjct: 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS------- 145
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTR 341
S G +++ +ARA+ N + I D+P S LD R+V + E G T
Sbjct: 146 ----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLT- 198
Query: 342 VLVTNQLHFLSQV----DRIILVHEGMVKEEGTFEDL---SNNGELFQKLMENAGKMEEY 394
+LV++ H + +V DRI L+H G + E GT E+L + + E E +
Sbjct: 199 ILVSS--HNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVKCSENF 256
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 31/222 (13%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ D+ + Y VL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-----HSDADLWEALERA 900
+G I K ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 68 YNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 122
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
+ D + LG S G + + L+ LL ++I VLD+ A+D +
Sbjct: 123 EVLD--LKKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 170
Query: 961 LIQKTIREEFKSCTMLIIA--HRLNTIIDCDRILLLDSGRVL 1000
+ K+I E K ++II+ L+ CD L
Sbjct: 171 KVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 3e-18
Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 31/222 (13%)
Query: 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220
+ IR+ +D L I + I G++V G G GKT+L+ + L P+
Sbjct: 9 SKLEIRDLSVGYDKPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 221 ASAV-------IRGTVAYVPQVSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSL 267
++G + ++P+ + +V D + G A++ +
Sbjct: 65 EIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
Query: 268 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
++G +S G +RV +A + N+++++ DDP+ A+D +V
Sbjct: 125 LDLKK--------KLG----ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 172
Query: 328 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369
+ ++ + LS D +H+ K +
Sbjct: 173 LKSILEILKEKGIVIISSR--EELSYCDVNENLHKYSTKIDK 212
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 6e-27
Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 36/229 (15%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
L LS + + + +VG GAGKS++L + + +G I G + + L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLA 72
Query: 862 KILGIIPQSPVL-FSGTVR----FNLDPFSEHSDADL-WEALERAHLKDAIRRNSLGLDA 915
+ Q F+ V + + +L + L D + R++ L
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHD---KTRTELLNDVAGALALDDKLGRSTNQL-- 127
Query: 916 QVSEAGENFSVGQRQLLSLSRALL-------RRSKILVLDEATAAVDVR----TDALIQK 964
S G+ Q + L+ +L ++L+LDE ++DV D ++
Sbjct: 128 ---------SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 965 TIREEFKSCTMLIIAHRLN-TIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
++ +++ +H LN T+ R LL G++L EE+L+
Sbjct: 179 LSQQ---GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 37/219 (16%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAVI 225
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 70
Query: 226 RG-TVAYVPQVSWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
AY+ Q F V + +++K L L + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLH------QHDKT-RTELLNDVAGAL---ALDDKL 120
Query: 284 ERGVN-ISGGQKQRVSMARA-------VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335
R N +SGG+ QRV +A + + D+P+++LD +
Sbjct: 121 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS 180
Query: 336 LSGKTRVLVTNQLHFLSQV----DRIILVHEGMVKEEGT 370
G V+ H L+ R L+ G + G
Sbjct: 181 QQGLAIVMS---SHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 28/229 (12%)
Query: 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----- 216
I ++N + K ER +L NINL++ G V I+G G GKT+L+ A+ G LP
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNI 60
Query: 217 -----PVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDL 271
V IR +P+ ++ TV D + + + +++ L
Sbjct: 61 FINGMEVRKIRNYIRY-STNLPE-AYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---L 115
Query: 272 DLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330
L EI R + +S GQ V + A+ S ++ D+P +DA R V R
Sbjct: 116 KLGE-----EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA-ARRHVISR 169
Query: 331 CIRGELSGKTRVLVT-NQLHFLSQVDRIILV-HEGMVKEEGTFEDLSNN 377
I+ E GK +LVT + ++ + +L +
Sbjct: 170 YIK-EY-GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 787 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
I+ ++V + + L ++ + +KV I+G G+GK+++L + ++ G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG--TVRFNLDPFSE---HSDADLWEALER 899
I I+G ++ K +R + P + TV + + E E L+
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959
L + I L ++ + S GQ L+ S AL + +I+ LDE VD
Sbjct: 115 LKLGEEI------LRRKLYK----LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARR 164
Query: 960 ALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLE-YDTPEELLSNE 1012
+I + I+E K +++ H L+ + + G L+ + ELL +
Sbjct: 165 HVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 71/275 (25%), Positives = 122/275 (44%), Gaps = 39/275 (14%)
Query: 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRT 823
+ IK ++ + + L+ +S +P G++G +
Sbjct: 4 HHHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGAS 63
Query: 824 GAGKSSMLNTLFRIV-ELER---GRILIDGFDIAKF---GLMDLRKILGIIPQSPVLFSG 876
GAGKS TL R V LER G +L+DG ++ L R+ +G+I Q L S
Sbjct: 64 GAGKS----TLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 119
Query: 877 -TVRFNLDPFSEHSDADLWEALERAHL-KDAIRR--NSL----GLDAQVSEAGENFSVGQ 928
TV N+ LE + KD ++R L GL + N S GQ
Sbjct: 120 RTVFGNVA-----------LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168
Query: 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTD----ALIQKTIREEFKSCTMLIIAHRLNT 984
+Q ++++RAL K+L+ D+AT+A+D T L++ I T+L+I H ++
Sbjct: 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRLG-LTILLITHEMDV 226
Query: 985 IID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
+ CD + ++ +G ++E DT E+ S+ + ++
Sbjct: 227 VKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 41/251 (16%)
Query: 152 PNPPLTSGLPAISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISA 210
I + N + L N++L +P G + ++G +G GK++LI
Sbjct: 14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIR- 72
Query: 211 MLGELPPVSDASAVIRGT----------VAYVPQVSWIF-------NATVRDNILFGSAF 253
+ L ++ S ++ G Q+ IF + TV N+
Sbjct: 73 CVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--PL 130
Query: 254 EPARYEKA-ID--VTSLQHDLDLLPGGDVTEIGERG----VNISGGQKQRVSMARAVYSN 306
E K + VT L L L+ +G++ N+SGGQKQRV++ARA+ SN
Sbjct: 131 ELDNTPKDEVKRRVTEL---LSLV------GLGDKHDSYPSNLSGGQKQRVAIARALASN 181
Query: 307 SDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEG 363
V + D SALD R + + + I L G T +L+T+++ + ++ D + ++ G
Sbjct: 182 PKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAVISNG 240
Query: 364 MVKEEGTFEDL 374
+ E+ T ++
Sbjct: 241 ELIEQDTVSEV 251
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 151 LPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 210
L + + S L +I G ++ IVG G GKT+ +
Sbjct: 346 LSERVDVERETLVEYPRLVKDYGSFK----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKM 401
Query: 211 MLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269
+ G P TVAY PQ + + TV + L T L
Sbjct: 402 LAGVEEPTEG-KVEWDLTVAYKPQYIKAEYEGTVYE--LLSKIDSSK-LNSNFYKTELLK 457
Query: 270 DLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
L + ++ +R V ++SGG+ QRV++A + ++D+++ D+P + LD V
Sbjct: 458 PLGI------IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 329 DRCIR--GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385
R IR E + KT ++V + + + V DR+I V EG G E + +
Sbjct: 512 -RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI-VFEGEPGRHGRALPPMGMREGMNRFL 569
Query: 386 ENAG 389
+ G
Sbjct: 570 ASVG 573
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-20
Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 40/226 (17%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL-------FRIVELER 842
ED V RY VL+ + VGIVG G GK++ + L
Sbjct: 95 EDCVHRYGVNAF-VLYR-LPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS- 151
Query: 843 GRILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDAD 892
+I F + ++ + + P G VR L E +
Sbjct: 152 WDNVIRAFRGNEL-QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFE 210
Query: 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952
E ++ L++ LD ++ + S G+ Q ++++ ALLR++ DE ++
Sbjct: 211 --EVVKELELENV-------LDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSS 257
Query: 953 AVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID--CDRILLL 994
+D+R + + IR + +L++ H L ++D D I ++
Sbjct: 258 YLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 7e-19
Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 32/217 (14%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
L I + +GIVG G GK++ + L + E G++ D
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------T 418
Query: 863 ILGIIPQSPVLFSGTVR---FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 919
+ + GTV +D +S+ E L+ + D RN V +
Sbjct: 419 VAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRN-------VED 471
Query: 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLI 977
S G+ Q ++++ LLR + I +LDE +A +DV + + IR E T L+
Sbjct: 472 ----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 978 IAHRLNTIID--CDRILLLDSGRVLEYDTPEELLSNE 1012
+ H + +ID DR+++ + G + +
Sbjct: 528 VEHDV-LMIDYVSDRLIVFE-GEPGRHGRALPPMGMR 562
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-15
Identities = 58/255 (22%), Positives = 95/255 (37%), Gaps = 51/255 (20%)
Query: 161 PAISIRNGYFSWD-----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215
AISI N D +L + G +V IVG G GKT+ + + G+L
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 216 PP-----------------VSDASAVIR----GTVAYVPQ---VSWIFNATV-RDNILFG 250
P ++ G + V + V + A + L
Sbjct: 142 IPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLK 201
Query: 251 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310
E ++E+ + L++ LD +SGG+ QRV++A A+ + +
Sbjct: 202 KVDEVGKFEEVVKELELENVLDRELH-----------QLSGGELQRVAIAAALLRKAHFY 250
Query: 311 IFDDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVH-----E 362
FD+P S LD +V R IR L GK ++V + L L + D I +V+
Sbjct: 251 FFDEPSSYLDIRQRLKV-ARVIR-RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVY 308
Query: 363 GMVKEEGTFEDLSNN 377
G+ + + N
Sbjct: 309 GIFSKPKGTRNGINE 323
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 32/256 (12%)
Query: 764 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRT 823
+EA ++ S S F L+ VL+ S+ + ++G
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQG-DFVLNVEEGEFSDSEILVMMGEN 387
Query: 824 GAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFN 881
G GK++++ L ++ + G+ + +++ + + V LF +R
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-----KPQKIAPKFPGTVRQLFFKKIR-- 439
Query: 882 LDPFSEHSDADLW-EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940
+ + + ++ + D I + V S G+ Q +++ AL
Sbjct: 440 ----GQFLNPQFQTDVVKPLRIDDIIDQE-------VQH----LSGGELQRVAIVLALGI 484
Query: 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLLDSG 997
+ I ++DE +A +D + K IR T I+ H D++++ +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 998 RVLE--YDTPEELLSN 1011
PE LL+
Sbjct: 545 PSKNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-22
Identities = 51/280 (18%), Positives = 97/280 (34%), Gaps = 33/280 (11%)
Query: 126 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA---------ISIRNGYFSWDSKA 176
+T + + + + E + L + S Y S
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-V 235
L + ++ ++G G GKT+LI + G L P + + + V+ PQ +
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-DEGQDIPKLNVSMKPQKI 422
Query: 236 SWIFNATVRDNI---LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292
+ F TVR + G P + + +D ++SGG
Sbjct: 423 APKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGG 471
Query: 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV---FDRCIRGELSGKTRVLVTNQLH 349
+ QRV++ A+ +D+++ D+P + LD+ R I + KT +V +
Sbjct: 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEHDFI 529
Query: 350 FLSQV-DRIILVHEGMVKE--EGTFEDLSNNGELFQKLME 386
+ + D++I+ K E L F K +
Sbjct: 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLN 569
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-19
Identities = 45/248 (18%), Positives = 89/248 (35%), Gaps = 39/248 (15%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI---- 845
V RY LH L T P +G+VG G GKS+ L L + GR
Sbjct: 81 AHVTHRYSAN-SFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 846 -------LIDGFDIAKFGLMDLRKILGIIPQSPVLF------SGTVRF---NLDPFSEHS 889
G ++ + L + I + + G V+ L E S
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 890 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
D+ ++ L++ ++R+ + + S G+ Q ++ + ++ + + + DE
Sbjct: 199 PEDVKRYIKILQLENVLKRD-------IEK----LSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 950 ATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005
++ +DV+ + IR K ++ + H L+ + D + ++ +
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTK--YVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVT 305
Query: 1006 EELLSNEG 1013
EG
Sbjct: 306 LPASVREG 313
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 43/246 (17%), Positives = 84/246 (34%), Gaps = 41/246 (16%)
Query: 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-- 217
LP + + + + + L+ G ++ +VG G GK++ + + G+ P
Sbjct: 75 LPTNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL 131
Query: 218 --------VSDASAVIRGT---------------VAYVPQVSWIFNATVRDNILF-GSAF 253
+ RG+ PQ ++ + G
Sbjct: 132 GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELL 191
Query: 254 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIF 312
+ + DV L L + +R + +SGG+ QR ++ + +DV++F
Sbjct: 192 KLRMEKSPEDVKRYIKILQL------ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 313 DDPLSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEG 369
D+P S LD + IR L K + V + L L + D + +++
Sbjct: 246 DEPSSYLDVKQRLNAA-QIIR-SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGV 303
Query: 370 TFEDLS 375
S
Sbjct: 304 VTLPAS 309
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 23/258 (8%)
Query: 143 LLAEEKILLPNPPLTSGLPA------ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAI 196
L +E + + Y L +I G ++ I
Sbjct: 258 YLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGI 317
Query: 197 VGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEP 255
VG G GKT+ + + G P ++ TVAY PQ + + TV + L
Sbjct: 318 VGPNGIGKTTFVKMLAGVEEP-TEGKIEWDLTVAYKPQYIKADYEGTVYE--LLSKIDAS 374
Query: 256 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDD 314
+ T L L + ++ +R V +SGG+ QRV++A + ++D+++ D+
Sbjct: 375 -KLNSNFYKTELLKPLGI------IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDE 427
Query: 315 PLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 371
P + LD V R IR E + KT ++V + + + V DR++ V EG + G
Sbjct: 428 PSAYLDVEQRLAVS-RAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM-VFEGEPGKYGRA 485
Query: 372 EDLSNNGELFQKLMENAG 389
E + + + G
Sbjct: 486 LPPMGMREGMNRFLASIG 503
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-19
Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 36/224 (16%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV------ELERG 843
ED V RY VL+ L + VGIVG G GKS+ + L + + +
Sbjct: 25 EDCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 844 RILIDGFDIAKFGLMDLRKILG----IIPQS------PVLFSGTVRFNLDPFSEHSDADL 893
+I F + K+ + + P G V L E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE- 140
Query: 894 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953
E ++ L++ + R + S G+ Q ++++ ALLR + DE ++
Sbjct: 141 -EVVKALELENVLERE-------IQH----LSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 954 VDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIID-CDRILLL 994
+D+R + IR ++L++ H L + D I ++
Sbjct: 189 LDIRQRLNAARAIR-RLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 50/251 (19%), Positives = 89/251 (35%), Gaps = 35/251 (13%)
Query: 767 EAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 826
+ + + +V Y L I + +GIVG G G
Sbjct: 268 PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF---RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 827 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVR---FNLD 883
K++ + L + E G+I D + + GTV +D
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWDL------------TVAYKPQYIKADYEGTVYELLSKID 372
Query: 884 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943
+S+ E L+ + D R S G+ Q ++++ LLR +
Sbjct: 373 ASKLNSNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAIAATLLRDAD 421
Query: 944 ILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIID--CDRILLLDSGRV 999
I +LDE +A +DV + + IR E T L++ H + +ID DR+++ + G
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFE-GEP 479
Query: 1000 LEYDTPEELLS 1010
+Y +
Sbjct: 480 GKYGRALPPMG 490
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 46/220 (20%)
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAVIR---------- 226
L + G +V IVG G GK++ + + G+L P VIR
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 227 ------GTVAYVPQ------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 274
G + V + + V + + A E + E+ + L++ L+
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELENVLE-- 153
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334
EI +SGG+ QRV++A A+ N+ + FD+P S LD IR
Sbjct: 154 -----REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR-AIR- 202
Query: 335 EL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTF 371
L GK+ ++V + L L + D I +V+ G G F
Sbjct: 203 RLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGIF 241
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-21
Identities = 59/312 (18%), Positives = 123/312 (39%), Gaps = 34/312 (10%)
Query: 126 ITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS---------IRNGYFSWDSKA 176
+++ A V + + L E + + + L +S + + K
Sbjct: 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236
L+ N + G ++ I+G G GKT+ ++GE+ + + ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 237 WI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQK 294
+ ++ TV+ +A + A + + L+L + E V ++SGG+
Sbjct: 340 FPNYDGTVQQ--YLENASKDALSTSSWFFEEVTKRLNL------HRLLESNVNDLSGGEL 391
Query: 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLS 352
Q++ +A + +D+++ D P S LD R + + I+ ++ + L
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEE-RYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450
Query: 353 QV-DRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKP 411
+ DRII V +G ++ G ++ M E++ E E D +T +P
Sbjct: 451 YIADRII-VFKGEPEKAGLATS--------PVTLKTG--MNEFLRELEVTFRRDAETGRP 499
Query: 412 AANGVDNDLPKE 423
N + + L +
Sbjct: 500 RVNKIGSYLDRV 511
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 2e-21
Identities = 49/279 (17%), Positives = 100/279 (35%), Gaps = 49/279 (17%)
Query: 765 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTG 824
++ E + +K+ ++ + L + + +GI+G G
Sbjct: 248 DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF---QLVVDNGEAKEGEIIGILGPNG 304
Query: 825 AGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-D 883
GK++ L + + G + + ++ ++I + GTV+ L +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILS----YKPQRIF-------PNYDGTVQQYLEN 353
Query: 884 PFSEHSDADLW---EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940
+ W E +R +L + N V++ S G+ Q L ++ L +
Sbjct: 354 ASKDALSTSSWFFEEVTKRLNLHRLLESN-------VND----LSGGELQKLYIAATLAK 402
Query: 941 RSKILVLDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIID--CDRILLLD 995
+ + VLD+ ++ +DV ++ K I+ E K II H L+ I D DRI++
Sbjct: 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK-AVTFIIDHDLS-IHDYIADRIIVFK 460
Query: 996 SGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSL 1034
G + + ++LR L
Sbjct: 461 -GEPEKAGLATS------------PVTLKTGMNEFLREL 486
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 9e-19
Identities = 40/243 (16%), Positives = 92/243 (37%), Gaps = 35/243 (14%)
Query: 790 EDVVLRYRPELPPVLHGLSFTIP-PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848
+V+ RY+ P + +G++G+ G GK+++L L G I+ +
Sbjct: 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKIL-------AGEIIPN 52
Query: 849 --GFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVR-----FNLDPFSEHSDADLWEAL 897
+ L++ + + +S ++ ++ S+ + E L
Sbjct: 53 FGDPNSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEIL 110
Query: 898 ERAHLKDAIRR--NSLGL----DAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
+ + L + + + S G Q L ++ +LLR + + + D+ +
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANI----LSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010
+ +DVR + K IRE K+ ++++ H L + D I ++ + + +
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
Query: 1011 NEG 1013
G
Sbjct: 227 RVG 229
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-16
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 29/216 (13%)
Query: 183 NINLDIPV-GSLVAIVGGTGEGKTSLISAMLGELPP----------VSDASAVIRGT-VA 230
L P +++ ++G G GKT+++ + GE+ P + RG +
Sbjct: 16 LFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75
Query: 231 YVPQ---------VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
+ V I L G+ K + +LL ++T
Sbjct: 76 NYFKELYSNELKIVHKIQYVEYASKFLKGT--VNEILTKIDERGKKDEVKELL---NMTN 130
Query: 282 IGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340
+ + +SGG QR+ +A ++ +DV+IFD P S LD + IR L K
Sbjct: 131 LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKY 189
Query: 341 RVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLS 375
++V + L L + D I +++ + +
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYA 225
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863
L G+S ++ D I+G G+GKS+++N + ++ + GR+ + DI + ++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN---KEPAEL 79
Query: 864 --LGIIP--QSPVLFSG-TVRFN-LDPFSEHSDADLWEALERAHLKD--AIRRNS----- 910
GI+ Q+P TV N L ++ L + + + +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 139
Query: 911 -LGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR-TDALIQ--KTI 966
L L S GQ +L+ + RAL+ K++V+DE A V + +
Sbjct: 140 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199
Query: 967 REEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+ + T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 200 KAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 3e-18
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862
+ G+ +P V ++G GAGK++ L+ + +V ++G+I+ +G DI
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN---KPAHV 77
Query: 863 I--LGIIPQSP---VLFSG-TVRFNLD--PFSEHSDADLWEALERAH-----LKDAIRRN 909
I +GI P +F TV NL ++ + LE LK+ R
Sbjct: 78 INRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLK 134
Query: 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---AAVDVRTDALIQKTI 966
L G S G++Q+L++ RAL+ R K+L++DE + A + V + + I
Sbjct: 135 QL--------GG-TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185
Query: 967 REEFKSCTMLII---AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012
+E T+L++ A + +L++G+++ ELL NE
Sbjct: 186 NQE--GTTILLVEQNALGALKV--AHYGYVLETGQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 9e-12
Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 31/218 (14%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRG 227
+ I+L +P G +V ++G G GKT+ +SA+ G + A + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 228 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGER- 285
+A VP+ IF TV +N++ G+ + D L+ L P + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD---LEWIFSLFP-----RLKERL 133
Query: 286 ---GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD--RCIRGELSGKT 340
G +SGG++Q +++ RA+ S + + D+P L + +VF+ + I E G T
Sbjct: 134 KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTT 191
Query: 341 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377
+LV N L L ++ G + EG +L +N
Sbjct: 192 ILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 42/217 (19%)
Query: 183 NINLDIPVGS-LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVS 236
+N+D +G ++G TG GK+ + ++ + + G + +P +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLE-LIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 237 WIF-------NATVRDNILFGSAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
++ + +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------G 338
+SGG++QRV++ARA+ + + D+PLSA+D + EL
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL-----MEELRFVQREFD 177
Query: 339 KTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+ VT + + D + ++ G + E+G ++L
Sbjct: 178 VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 42/211 (19%)
Query: 817 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-- 874
++G TGAGKS L + IV+ +RG + ++G DI L R+ +G +PQ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 875 ---SGTVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930
+ + L D + E E+ + + R A++S G G+RQ
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP----ARLS--G-----GERQ 133
Query: 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS------CTMLIIAHRLNT 984
++L+RAL+ + ++L+LDE +AV D + + EE + +L + H
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAV----DLKTKGVLMEELRFVQREFDVPILHVTH---- 185
Query: 985 IID-------CDRILLLDSGRVLEYDTPEEL 1008
D D + ++ +GR++E +EL
Sbjct: 186 --DLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 2e-15
Identities = 75/495 (15%), Positives = 136/495 (27%), Gaps = 144/495 (29%)
Query: 732 LNITSLLTAVLRL-ASLAENSLNAVER-VG-----NYIELPSEAPLVIESNRPPPGWPSS 784
+ ++ LRL +L V++ V NY ++ + PS
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSM 107
Query: 785 GSIKFEDVVLR-------------YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831
+ + + R R + L + P+ V I G G+GK+ +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 832 NTLFRIVELERGRILIDGFDI--AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDP-FSEH 888
+ +++ F I + + + + Q L + +DP ++
Sbjct: 168 LDVCLSYKVQCKM----DFKIFWLNLKNCNSPETVLEMLQK--LL-----YQIDPNWTSR 216
Query: 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948
SD L ++ +RR LL +LVL
Sbjct: 217 SDHSSNIKLRIHSIQAELRR----------------------LLKSKP--YENC-LLVLL 251
Query: 949 EATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID------CDRILLLDSGRVLE 1001
+V+ F SC +L+ R + D I L L
Sbjct: 252 ------NVQN-----AKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 1002 YDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAENKLREENKQI---------- 1051
D + LL +YL L E
Sbjct: 300 PDEVKSLL------------------LKYL------DCRPQDLPREVLTTNPRRLSIIAE 335
Query: 1052 ---DGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKK----TKDAVVTL 1104
DG W W L + SS L LE + + + A +
Sbjct: 336 SIRDGLATW---DNWKHVNCDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 1105 QGVLE----GKHDKEIEESLNQ-HEVS-TDGWWSALYRMIEGLSVMSRLARN---RLHQS 1155
+L ++ +N+ H+ S + I + + ++ LH+S
Sbjct: 390 I-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 1156 --DYDLEERSIDWDH 1168
D+ ++ D D
Sbjct: 449 IVDHYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.0 bits (178), Expect = 5e-13
Identities = 75/517 (14%), Positives = 146/517 (28%), Gaps = 168/517 (32%)
Query: 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR--GTVAYVP-Q 234
R LL + V I G G GKT + A V + +
Sbjct: 141 RQALLELR----PAKNVLIDGVLGSGKTWV-------------ALDVCLSYKVQCKMDFK 183
Query: 235 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294
+ W+ N + P + + Q D + D + + ++ +
Sbjct: 184 IFWL-N--------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 295 QRVSMARAVYSNSDVFIFDD--PLSALDAHVGRQVFD-RCIRGELSGKTRVLVTNQLHFL 351
+R+ + Y N + + + A +A F+ C ++L+T + F
Sbjct: 235 RRL-LKSKPYENC-LLVLLNVQNAKAWNA------FNLSC---------KILLTTR--FK 275
Query: 352 SQVDRI---ILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKT 408
D + H + T L K Y++ +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLK----------YLDCRPQ-------- 316
Query: 409 SKPAANGVDNDLPKEASDT---------RKTKEGKSVL-----IKQEERETGV-VSFKVL 453
DLP+E T ++G + + ++ T + S VL
Sbjct: 317 ----------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 454 S------RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD--------------- 492
+ + + + W D
Sbjct: 367 EPAEYRKMFDR-------------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 493 QSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWL---IISSLYAAKRLHDAMLHSILRAP 549
S ++ +I S+ ++ V L N Y L I+ Y + D ++
Sbjct: 414 YSLVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDH-YNIPKTFD--SDDLIPPY 468
Query: 550 M---VFFHTNPLGR-IINRFAKDLGDIDRNVAVFVNM-FMGQVSQLLSTFVLIGIVSTMS 604
+ + H +G + N + + R VF++ F+ Q I +
Sbjct: 469 LDQYFYSH---IGHHLKNIEHPERMTLFRM--VFLDFRFLEQ-----------KIRHDST 512
Query: 605 LW----AIMPLL--LLFYAAYLYYQSTAREVKRLDSI 635
W +I+ L L FY Y+ E + +++I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 2e-07
Identities = 70/438 (15%), Positives = 131/438 (29%), Gaps = 130/438 (29%)
Query: 8 IISRMQKL----TKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSK---VQNVRNDE 60
++ +QKL R+D + I + ++ +++ + NV+N
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-- 255
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLT-------PARAFT---SLS 110
+ A F +C +L+T + L T + T S
Sbjct: 256 -AKAWNA-FNLSC--------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 111 LFA-VLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGY 169
L L LP +V+ N P + A SIR+G
Sbjct: 306 LLLKYLDCRPQDLPR---EVLTTN---------------------PRRLSIIAESIRDGL 341
Query: 170 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-----DASAV 224
+WD ++N D T++I + L L P D +V
Sbjct: 342 ATWD------NWKHVNCD---------------KLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 225 IRGTVAYVP----QVSWIFNATVRDNILFGSAFE--------PARYEKAIDVTSLQHDLD 272
+ ++P + W F+ D ++ + P +I +
Sbjct: 381 FPPSA-HIPTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI------PSIY 432
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAV---YSNSDVFIFDD-PLSALD----AHVG 324
L + + ++ R++ Y+ F DD LD +H+G
Sbjct: 433 LE--------------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM-VKEEGTFEDLSNNGELFQK 383
E R++ + FL Q +I H+ G+ + + ++
Sbjct: 479 HH-LKNIEHPERMTLFRMVFLD-FRFLEQ--KIR--HDSTAWNASGSILNTLQQLKFYKP 532
Query: 384 -LMENAGKMEEYVEEKED 400
+ +N K E V D
Sbjct: 533 YICDNDPKYERLVNAILD 550
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 58/246 (23%), Positives = 103/246 (41%), Gaps = 49/246 (19%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I ++N + K + L N+N++I G I+G +G GKT+ + ++ L S
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMR-IIAGLDVPSTGE 61
Query: 223 AVIRGTV------AYVP----QVSWIF-------NATVRDNILFG------SAFE-PARY 258
+ VP ++ +F N T +NI F S E R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 259 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 319 LDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTF 371
LDA + R + G T ++V+ + + DR+ ++ +G + + G
Sbjct: 171 LDARMRDSA-----RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225
Query: 372 EDLSNN 377
EDL +N
Sbjct: 226 EDLYDN 231
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 61/266 (22%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELE 841
I ++V ++ L ++ I ++ GI+G +GAGK+ T RI+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKT----TFMRIIAGLDVPS 58
Query: 842 RGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEA 896
G + D +A G + + RKI G++ Q+ L+ T N+ F
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKI-GMVFQTWALYPNLTAFENI-AF----------P 106
Query: 897 LERAHL-KDAIRRNSLGLDAQVSEAGE-------------NFSVGQRQLLSLSRALLRRS 942
L + K+ IR+ +V E + S Q+Q ++L+RAL++
Sbjct: 107 LTNMKMSKEEIRK-------RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDP 159
Query: 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDR 990
+L+LDE + + DA ++ + R K + RL T++ D DR
Sbjct: 160 SLLLLDEPFSNL----DARMRDSARALVKE-----VQSRLGVTLLVVSHDPADIFAIADR 210
Query: 991 ILLLDSGRVLEYDTPEELLSNEGSSF 1016
+ +L G++++ PE+L N S
Sbjct: 211 VGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 237
NINL I G +A++G +G GK++L+ + + + V +P V
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLY-TIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79
Query: 238 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+F + TV NI F + + + + L+ P
Sbjct: 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPW------- 132
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 337
+SGGQ+QRV++ARA+ +V + D+PLS LDA + +V R EL
Sbjct: 133 ----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV-----RAELKRLQKEL 183
Query: 338 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 377
G T V VT H Q DRI ++ EG + + GT +++
Sbjct: 184 GITTVYVT---H--DQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 153 NPPLTSGLPAISIRNGY--FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISA 210
+ G I + +++ + ++ I G +V ++G +G GKT+++
Sbjct: 5 HHHHHHGSMTIEFVGVEKIYPGGARS----VRGVSFQIREGEMVGLLGPSGSGKTTILR- 59
Query: 211 MLGELPPVSDASAVIRGT-VAYVP----QVSWIF-------NATVRDNILFG-------S 251
++ L + I G V +P V +F + TV DN+ FG
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPK 119
Query: 252 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVF 310
AR + + L+ R + +SGGQ+QRV++ARA+ V
Sbjct: 120 DEMDARVRELLRFMRLES------------YANRFPHELSGGQQQRVALARALAPRPQVL 167
Query: 311 IFDDPLSALDAHVGRQVFDRCIRGELS------GKTRVLVT-NQLHFLSQVDRIILVHEG 363
+FD+P +A+D + R++ R + G T V VT +Q L DR++++HEG
Sbjct: 168 LFDEPFAAIDTQIRREL-----RTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEG 222
Query: 364 MVKEEGTFEDL 374
V++ GT E++
Sbjct: 223 NVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 64/250 (25%), Positives = 110/250 (44%), Gaps = 51/250 (20%)
Query: 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---- 838
S +I+F V Y + G+SF I + VG++G +G+GK+ T+ R++
Sbjct: 11 GSMTIEFVGVEKIYPGGAR-SVRGVSFQIREGEMVGLLGPSGSGKT----TILRLIAGLE 65
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNL-------DPFSEHSD 890
+G + I G + R + G++ Q+ LF TV N+ + D
Sbjct: 66 RPTKGDVWIGGKRVTDLPPQK-RNV-GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD 123
Query: 891 ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950
A + E L L+ R ++S G GQ+Q ++L+RAL R ++L+ DE
Sbjct: 124 ARVRELLRFMRLESYANRFP----HELS--G-----GQQQRVALARALAPRPQVLLFDEP 172
Query: 951 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSGR 998
AA+ D I++ +R + + + T + D DR+L+L G
Sbjct: 173 FAAI----DTQIRRELRTFVRQ-----VHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN 223
Query: 999 VLEYDTPEEL 1008
V ++ TPEE+
Sbjct: 224 VEQFGTPEEV 233
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 5e-14
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 54/232 (23%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 224
L N+NL+I G V+I+G +G GK+++++ ++G L P +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 225 IRG-TVAYVPQVSWIFN----ATVRDN-----ILFGSAFEPA--RYEKAIDVTSLQHDLD 272
IR + +V Q FN T +N I R ++A++ L
Sbjct: 80 IRRDKIGFVFQQ---FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LK 130
Query: 273 LLPGGDVTEIGERGVN-----ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
+ E+ ER N +SGGQ+QRV++ARA+ +N + + D P ALD+ G ++
Sbjct: 131 MA------ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 328 FDRCIRGEL---SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376
+ +L GKT V+VT+ ++ +RII + +G V+ E +
Sbjct: 185 MQ--LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFDD 234
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 35/237 (14%)
Query: 787 IKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
+K ++V Y+ E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 845 ILIDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSE 887
+ ID L +R +G + Q FNL P F
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---------FNLIPLLTALENVELPLIFKY 112
Query: 888 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN-FSVGQRQLLSLSRALLRRSKILV 946
E +RA + ++ L+ + + N S GQ+Q ++++RAL I++
Sbjct: 113 RGAMSGEERRKRA--LECLKM--AELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168
Query: 947 LDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
D+ T A+D +T I + +++ E T++++ H +N +RI+ L G V
Sbjct: 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 7e-14
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 237
+NL I G + ++G +G GKT+ + M+ L ++ V Y+P +S
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLR-MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87
Query: 238 IF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+F + TV +NI F R A ++ ++ L+ P
Sbjct: 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 337
+SGGQ+QRV++ARA+ DV + D+PLS LDA + + R E+
Sbjct: 141 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM-----RAEIKKLQQKL 191
Query: 338 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 377
T + VT H QV DRI +++ G + + G+ ++
Sbjct: 192 KVTTIYVT---H--DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 9e-14
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 53/226 (23%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 237
++ ++ G VA++G +G GKT+ + ML + + V +P +V
Sbjct: 21 GVSFEVKDGEFVALLGPSGCGKTTTLL-MLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79
Query: 238 IF-------NATVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 283
+F + TV +NI F + R + + + LD P
Sbjct: 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPT------- 132
Query: 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------ 337
+SGGQ+QRV++ARA+ V +FD+PLS LDA++ + R E+
Sbjct: 133 ----QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM-----RAEIKHLQQEL 183
Query: 338 GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 377
G T V VT H Q RI + ++G + + GT +++ ++
Sbjct: 184 GITSVYVT---H--DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 47/218 (21%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--P----------PVSDAS----AV 224
L I+L + G V+I+G +G GK++L+ +LG L P V + ++
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 225 IR-GTVAYVPQVSWIFN----ATVRDNI----LFGSAFEPARYEKAIDVTS---LQHDLD 272
+R + +V Q T +N+ L + E+ + S L L
Sbjct: 79 LRNRKLGFVFQF---HYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS 135
Query: 273 LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332
P +SGG++QRV++ARA+ + + D+P LD+ ++V D I
Sbjct: 136 RKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD--I 182
Query: 333 RGEL--SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368
++ G + V+VT++ R + + +G V E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E++ R +L G+S ++ + V I+G +G+GKS++L L + G++
Sbjct: 5 LRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 847 IDGFDIAKFG---LMDLR-KILGIIPQSPVLFSGTVRFNLDP-------------FSEHS 889
++G ++ L LR + LG + Q L P
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQF---------HYLIPELTALENVIVPMLKMGKP 113
Query: 890 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
EA ER + + LGL ++S S G++Q ++++RAL +L DE
Sbjct: 114 KK---EAKERG--EYLLSE--LGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADE 166
Query: 950 ATAAVDVRTDALIQ---KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
T +D + I E +++++ H R L + G+V+
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGT--SIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 1e-13
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 45/221 (20%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----VSDASAVIRGTVAYVP----Q 234
+I+L + G ++ I+G +G GKT+L+ + G P +S + I +P +
Sbjct: 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81
Query: 235 VSWIF-------NATVRDNILFG-------SAFEPARYEKAIDVTSLQHDLDLLPGGDVT 280
+ ++ + TV NI +G +A E R E +++T + P
Sbjct: 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPH---- 137
Query: 281 EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---- 336
+SGGQ+QR ++ARA+ + ++ + D+P SALD + RQ IR ++
Sbjct: 138 -------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ-----IREDMIAAL 185
Query: 337 --SGKTRVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+GK+ V V+ ++ L DRI ++ +G + + + +L
Sbjct: 186 RANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 8e-11
Identities = 55/253 (21%), Positives = 106/253 (41%), Gaps = 56/253 (22%)
Query: 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----E 839
+ ++ + ++ PVL+ +S ++ P + + I+G +G GK+ TL R + +
Sbjct: 2 TAALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKT----TLLRCLAGFEQ 55
Query: 840 LERGRILIDGFDIAKFGLM---DLRKILGIIPQSPVLF-----SGTVRFNLDPFSEHSDA 891
+ G I + G I R++ G + Q VLF + + L + A
Sbjct: 56 PDSGEISLSGKTIFSKNTNLPVRERRL-GYLVQEGVLFPHLTVYRNIAYGL-GNGKGRTA 113
Query: 892 DLW----EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947
LE + + R ++S G GQ+Q +L+RAL ++++L
Sbjct: 114 QERQRIEAMLELTGISELAGR----YPHELS--G-----GQQQRAALARALAPDPELILL 162
Query: 948 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLD 995
DE +A+D + +++ IRE+ + + + D DRI ++
Sbjct: 163 DEPFSALDEQ----LRRQIREDMIA-----ALRANGKSAVFVSHDREEALQYADRIAVMK 213
Query: 996 SGRVLEYDTPEEL 1008
GR+L+ +P EL
Sbjct: 214 QGRILQTASPHEL 226
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 59/230 (25%), Positives = 111/230 (48%), Gaps = 40/230 (17%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDL 860
VL G++ I + V ++G +G+GKS+ L L + + + G I+IDG ++ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 861 RKILGIIPQSPVLFSGTVRFNLDPFSEH-------SDADLW-------EALERAHLKDAI 906
R+ +G++ Q FNL P H + A + +A +A + +
Sbjct: 99 REEVGMVFQR---------FNLFP---HMTVLNNITLAPMKVRKWPREKAEAKA--MELL 144
Query: 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD---VRTDALIQ 963
+ +GL + ++ S GQ Q ++++RAL KI++ DE T+A+D V + L
Sbjct: 145 DK--VGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG-EVL-- 199
Query: 964 KTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+++ TM+++ H + + DR+L +D G ++E PE+L
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--------------ELPPVSDASAVIR 226
L IN+ I G +V ++G +G GK++ + + L +R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 227 GTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI 282
V V Q FN TV +NI P + K + ++LL D +
Sbjct: 100 EEVGMVFQR---FNLFPHMTVLNNITLA----PMKVRKWPREKAEAKAMELL---DKVGL 149
Query: 283 GERG----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338
++ ++SGGQ QRV++ARA+ + +FD+P SALD + +V + G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 339 KTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
T V+VT+++ F +V DR++ + G + EEG EDL +
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 6e-13
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 40/215 (18%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-VAYVP----QVSW 237
N++L + G I+G TG GKT + ++ ++ G V + +++
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLE-LIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76
Query: 238 IF-------NATVRDNILFG----SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286
++ + V+ N+ FG +P R ++H LD P
Sbjct: 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPL---------- 126
Query: 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS------GKT 340
+SGG++QRV++ARA+ +N + + D+PLSALD R LS T
Sbjct: 127 -TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA-----REMLSVLHKKNKLT 180
Query: 341 RVLVT-NQLHFLSQVDRIILVHEGMVKEEGTFEDL 374
+ +T +Q DRI +V +G + + G E++
Sbjct: 181 VLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 59/251 (23%), Positives = 103/251 (41%), Gaps = 66/251 (26%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV----ELER 842
I+ E + +++ L LS + + I+G TGAGK+ ++ +
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKT----LFLELIAGFHVPDS 54
Query: 843 GRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNL--------DPFSEHS 889
GRIL+DG D+ DL I + Q+ LF V+ NL +
Sbjct: 55 GRILLDGKDVT-----DLSPEKHDI-AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV 108
Query: 890 DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949
+ ++ + RN +S G G++Q ++L+RAL+ KIL+LDE
Sbjct: 109 L----DTARDLKIEHLLDRNP----LTLS--G-----GEQQRVALARALVTNPKILLLDE 153
Query: 950 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-TII----D-------CDRILLLDSG 997
+A+D R Q+ RE + + T++ D DRI ++ G
Sbjct: 154 PLSALDPR----TQENAREMLSV-----LHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
Query: 998 RVLEYDTPEEL 1008
++++ PEE+
Sbjct: 205 KLIQVGKPEEI 215
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 59/232 (25%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTV-------AYVP-- 233
++L++ G + ++G +G GKT+ + M+ L S I + +VP
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLR-MIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79
Query: 234 --QVSWIF-------NATVRDNILFG------SAFE-PARYEKAIDVTSLQHDLDLLPGG 277
++ +F + TV DNI F E R + ++ L L+ P
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR- 138
Query: 278 DVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337
+SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++ R EL
Sbjct: 139 ----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM-----RAELK 183
Query: 338 ------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGTFEDLSNN 377
G T + VT H QV DRI +++ G++++ G+ +++ +
Sbjct: 184 KLQRQLGVTTIYVT---H--DQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 63/234 (26%), Positives = 105/234 (44%), Gaps = 49/234 (20%)
Query: 181 LLNINLDIPVGSLVAIVGGTGEGKTSLI------------------------SAMLGELP 216
L ++L G +++I+G +G GK++ + G+L
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 217 PVSDAS-AVIRGTVAYVPQVSWIFN----ATVRDNILFGSAFEPARYEKAIDVTSLQHDL 271
++R + V Q FN TV +N++ P + + + L
Sbjct: 82 VADKNQLRLLRTRLTMVFQH---FNLWSHMTVLENVMEA----PIQVLGLSKHDARERAL 134
Query: 272 DLLPGGDVTEIGERG-----VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQ 326
L I ER V++SGGQ+QRVS+ARA+ DV +FD+P SALD + +
Sbjct: 135 KYL---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 327 VFDRCIRGEL--SGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
V ++ +L GKT V+VT+++ F V +I +H+G ++EEG E + N
Sbjct: 192 VLR-IMQ-QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 5e-11
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 54/243 (22%)
Query: 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 859
VL G+S D + I+G +G+GKS+ L + + + G I+++G +I D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 860 ----------LRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALE---------RA 900
LR L ++ Q FNL +S + LE
Sbjct: 81 KVADKNQLRLLRTRLTMVFQH---------FNL--WSHMT------VLENVMEAPIQVLG 123
Query: 901 HLKDAIRRNSLGLDAQV--SEAGENF-----SVGQRQLLSLSRALLRRSKILVLDEATAA 953
K R +L A+V E + S GQ+Q +S++RAL +L+ DE T+A
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 183
Query: 954 VD---VRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008
+D V + L + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 184 LDPELVG-EVL--RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240
Query: 1009 LSN 1011
N
Sbjct: 241 FGN 243
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 3e-12
Identities = 43/205 (20%), Positives = 76/205 (37%), Gaps = 31/205 (15%)
Query: 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861
+L+ + + + GI G G GKS TL R I + F +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKS----TLMRA---------IANGQVDGFPTQEEC 495
Query: 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGL-DAQVSEA 920
+ + + S T LD + + L G D ++
Sbjct: 496 RTVYVEHDIDGTHSDTSV--LD--FVFESGVGTKEAIKDKL------IEFGFTDEMIAMP 545
Query: 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 980
S G + L+L+RA+LR + IL+LDE T +D A + + T + I+H
Sbjct: 546 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISH 603
Query: 981 R---LNTIIDCDRILLLDSGRVLEY 1002
L+ + C+ I+ + ++ +Y
Sbjct: 604 DSVFLDNV--CEYIINYEGLKLRKY 626
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 4e-09
Identities = 31/146 (21%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236
+ L L + I G G GK++L+ A+ R YV
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECR--TVYVEHDI 504
Query: 237 WIFNA--TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294
++ +V D + + L G I +SGG K
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAIKDK---------LIEF-GFTDEMIAMPISALSGGWK 554
Query: 295 QRVSMARAVYSNSDVFIFDDPLSALD 320
++++ARAV N+D+ + D+P + LD
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLD 580
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 887 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAG--ENFSVGQRQLLSLSRALLRRSKI 944
E + + L R +++ LGLD ++ S GQ+ L L+ +R +
Sbjct: 865 EALASGQFRPLTRKEIEEHCSM--LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHL 922
Query: 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR---LNTIIDCDRILLLDSGRVLE 1001
+VLDE T +D + + K ++ EF+ ++II H + + + + GR+
Sbjct: 923 IVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTKNL--TEEVWAVKDGRMTP 978
Query: 1002 YD 1003
Sbjct: 979 SG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
+K ++ +Y P + ++F S ++ ++G GAGKS+++N L + G +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-05
Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 16/229 (6%)
Query: 137 KRMEEFLLAEEKILLPNPPLTSGL-----PAISIRNGYFSWDSKAERPTLLNINLDIPVG 191
K EE + + P P G+ + + N F + +P + +IN +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGT-SKPQITDINFQCSLS 699
Query: 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQVSWIFNATVRDNIL 248
S +A++G G GK++LI+ + GEL P + V +AY+ Q + ++ L
Sbjct: 700 SRIAVIGPNGAGKSTLINVLTGELLP--TSGEVYTHENCRIAYIKQHA----FAHIESHL 753
Query: 249 FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308
+ E ++ D + + G +R++ + +
Sbjct: 754 DKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKN 813
Query: 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357
+ ++ + + + + + V +
Sbjct: 814 TYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVE-SHSKMVAEV 861
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQ 347
+SGGQK ++ +A + + + D+P + LD + ++ E G +++T+
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALK-EFEG-GVIIITHS 957
Query: 348 LHFLSQV-DRIILVHEGMVK 366
F + + + V +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 3e-11
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 67/226 (29%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSL---------ISAMLGELP----PVSDASAVIRGTV 229
+INLDI G V VG +G GK++L I++ G+L ++D RG V
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS--GDLFIGEKRMNDTPPAERG-V 77
Query: 230 AYVPQVSWIFN-A-----TVRDNILFG--SAFEP-----ARYEKAIDVTSLQHDLDLLPG 276
V Q + A +V +N+ FG A R + +V L H LD P
Sbjct: 78 GMVFQ-----SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 132
Query: 277 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 336
+SGGQ+QRV++ R + + VF+ D+PLS LDA + Q+ R E+
Sbjct: 133 -----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM-----RIEI 176
Query: 337 S------GKTRVLVTNQLHFLSQV------DRIILVHEGMVKEEGT 370
S G+T + VT H QV D+I+++ G V + G
Sbjct: 177 SRLHKRLGRTMIYVT---H--DQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 290 SGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL 343
SGG++ + +A + + I D+P LD R++ R +L
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 309
Query: 344 VTNQLHFLSQVDRIILVHEGMVKEEGT 370
V++ D +I + E G+
Sbjct: 310 VSHDEELKDAADHVIRIS----LENGS 332
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1171 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.94 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.93 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.92 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.85 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.84 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.83 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.81 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.81 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.81 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.79 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.78 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.76 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.76 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.76 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.76 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.75 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.75 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.73 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.73 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.73 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.73 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.72 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.72 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.71 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.71 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.7 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.69 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.69 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.67 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.67 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.66 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.66 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.66 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.64 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.63 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.63 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.62 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.62 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.61 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.61 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.61 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.6 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.6 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.59 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.59 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.58 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.57 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.56 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.56 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.55 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.55 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.54 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.53 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.53 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.52 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.52 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.51 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.5 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.5 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.49 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.48 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.45 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.45 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.44 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.43 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.42 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.42 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.42 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.41 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.41 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.41 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.4 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.37 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.37 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.36 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.36 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.36 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.35 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.34 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.34 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.33 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.33 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.31 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.27 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.25 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.23 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.23 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.22 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.21 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.2 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.2 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.18 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.18 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.18 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.16 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.15 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.15 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.13 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.13 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.12 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.12 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.11 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.1 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.1 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.09 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.07 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.06 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.03 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.03 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.01 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.0 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.98 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.98 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.96 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.96 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.95 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.94 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.93 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.93 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.89 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.87 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.85 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.84 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.84 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.83 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.78 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.78 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.74 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.73 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.68 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.67 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.67 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.66 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.66 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.65 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.64 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.63 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.62 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.62 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.57 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.57 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.57 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.51 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.49 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.49 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.48 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.47 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.47 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.45 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.45 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.43 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.42 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.37 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.37 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.37 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.35 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.32 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.27 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.22 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.21 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.17 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.16 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.16 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.15 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.13 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.13 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.13 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.13 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.11 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.1 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.1 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.07 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.07 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.05 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.04 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.03 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.03 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.01 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.01 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.98 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.97 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.97 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.96 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.96 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.95 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.94 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.91 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.84 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.84 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.78 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.78 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.77 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.77 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.75 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.75 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.75 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.72 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.7 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.63 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.63 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.61 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.6 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.59 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.56 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.55 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.53 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.51 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.47 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.46 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.46 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.44 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.43 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.42 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.42 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.42 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.41 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.4 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.39 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.36 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.34 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.3 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.29 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.29 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.28 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.26 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.21 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.19 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.18 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.16 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.16 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.12 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.11 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.1 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.08 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.07 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.07 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.06 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.06 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.04 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.04 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.04 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.03 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.03 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.02 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.0 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.95 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.94 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.93 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.91 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.91 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.9 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.88 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.88 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.86 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.84 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.82 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.79 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.78 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.76 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.75 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.74 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.72 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.68 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.66 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.6 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.59 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.59 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.57 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.57 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.56 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.56 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.51 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.47 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.39 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.36 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.33 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.32 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.31 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.3 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.25 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.22 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.19 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.19 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.17 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.15 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.14 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.13 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.13 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.12 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.08 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.07 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.07 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.04 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.03 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.98 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.93 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.91 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.89 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.87 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.86 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.85 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.81 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.8 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.79 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 95.77 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.75 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.73 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.72 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 95.63 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.63 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.58 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.57 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.55 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.53 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.5 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.5 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.46 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.46 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.44 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.43 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.33 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.33 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.3 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.27 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.27 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.2 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.16 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.15 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.13 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.11 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.06 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.05 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.04 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.03 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.91 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.87 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.87 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.83 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.8 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 94.77 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.77 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.77 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.74 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.74 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.69 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.68 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.64 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.61 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 94.59 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.57 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.51 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.5 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-140 Score=1396.68 Aligned_cols=1010 Identities=20% Similarity=0.251 Sum_probs=756.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.+++++..++.+++.+++.+.+.|+++||++||+|+||+.+.+++.+..++..+...+.....++...+...+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1321)
T 4f4c_A 252 CGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNF 331 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999887777666655555555444333333322
Q ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC---CCCC
Q 001055 84 --LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP---PLTS 158 (1171)
Q Consensus 84 --~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~---~~~~ 158 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..+++.+..+.++.+|++||.++++.++....+.. ...+
T Consensus 332 ~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 411 (1321)
T 4f4c_A 332 ISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMK 411 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCC
Confidence 23456778899999999999999999999999999999999999999999999999999987654322111 1112
Q ss_pred CCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ec
Q 001055 159 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IR 226 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~ 226 (1171)
....|+++|++|+|+..+++++|+|+||+|++|++++||||||||||||+++|+|+++|++|.+.. +|
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 223699999999998767789999999999999999999999999999999999999999886542 34
Q ss_pred CcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc
Q 001055 227 GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~ 305 (1171)
++||||+|+||+|++||+|||.||.+ .+++++.++++.|+++++++.+|+|++|.+|++|.+|||||||||+||||||+
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 57999999999999999999999975 57899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+|+|||||||||+||+++++.+.+.+. ...+|+|+|+|||+++.+..||+|++|++|+|+++|+++|+++.++.|.+++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~-~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~ 650 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALD-KAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV 650 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHH-HHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHH-HHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHH
Confidence 999999999999999999887777554 4457999999999999999999999999999999999999999999999888
Q ss_pred HHhchhhhhhhccccC---ccc-cCC-----CCCCCCCCCCCCCCC----------cc--ccccccccccc--hhhhhhh
Q 001055 386 ENAGKMEEYVEEKEDG---ETV-DNK-----TSKPAANGVDNDLPK----------EA--SDTRKTKEGKS--VLIKQEE 442 (1171)
Q Consensus 386 ~~~~~~~~~~~~~~~~---~~~-~~~-----~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~--~~~~~~~ 442 (1171)
..+...+...+..+.. +.. ... ..........+.... .. ...++...++. ....++.
T Consensus 651 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1321)
T 4f4c_A 651 TAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQEL 730 (1321)
T ss_dssp HHHHHHHHHHHHHCC--------------------------------------------------CCCCCCHHHHHHHTT
T ss_pred HhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhccchhHHHHHHHH
Confidence 7554322211110000 000 000 000000000000000 00 00000000000 0111122
Q ss_pred hccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhcccc----ccCCCCchHHHHHHHHHHHHHHHH
Q 001055 443 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS----SLKTHGPLFYNTIYSLLSFGQVLV 518 (1171)
Q Consensus 443 ~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~ 518 (1171)
...+...+..++.++...+.++.+++.+++.++...+....+.|+..|.+.. ........+|..+|.+++++..++
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 810 (1321)
T 4f4c_A 731 EENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGIC 810 (1321)
T ss_dssp TTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333333344444444444443334444444444443322 222233456777888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001055 519 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 596 (1171)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~--~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~ 596 (1171)
.++..++....+.++..++|.+++++++++|+.||+. +++|+++||+++|++.++..++..+..++..++.++..+++
T Consensus 811 ~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~ 890 (1321)
T 4f4c_A 811 SFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGL 890 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeee
Confidence 9999999999999999999999999999999999985 89999999999999999999998888888888777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001055 597 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIR 676 (1171)
Q Consensus 597 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~ 676 (1171)
+++..+...+++++++++++....++.+.............++....+.|+++|+++||+|+.++++.+.+.+..+...+
T Consensus 891 ~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~ 970 (1321)
T 4f4c_A 891 AFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHK 970 (1321)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred ehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 66666555444444443333333222221111111122233455667889999999999999999999999888887766
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 677 YTLVNMGANRWLAIRL----EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 752 (1171)
Q Consensus 677 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1171)
..........+..... .+...+++++++.+........+. ..+..++........++..+.......+...
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1045 (1321)
T 4f4c_A 971 EAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP-----MRVLRVMYAITISTSTLGFATSYFPEYAKAT 1045 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH-----HHHHHHHHHHHTTTSSTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333332222222 222222222222111111111111 1111111111112233444455666778888
Q ss_pred HHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHH
Q 001055 753 NAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831 (1171)
Q Consensus 753 ~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl 831 (1171)
.+.+|+.++++.+++.+. ...+.+.||..|.|+|+||+|+|+.+ ..+||+|+||+|+|||+||||||||||||||+
T Consensus 1046 ~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1046 FAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp HHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH
T ss_pred HHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHH
Confidence 999999999987665322 22334456778899999999999753 23699999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHH
Q 001055 832 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRR 908 (1171)
Q Consensus 832 ~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~ 908 (1171)
++|+|+|+|++|+|.+||+|+++++++++|++|+||||||.||++|||+||.++ .+.++++++++++.+++++++++
T Consensus 1123 ~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~ 1202 (1321)
T 4f4c_A 1123 ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAE 1202 (1321)
T ss_dssp HHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHT
T ss_pred HHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHc
Confidence 999999999999999999999999999999999999999999999999998765 34689999999999999999999
Q ss_pred ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhc
Q 001055 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 988 (1171)
Q Consensus 909 lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~ 988 (1171)
+|.||||.++++|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++||+|+||||++++.+|
T Consensus 1203 Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~a 1282 (1321)
T 4f4c_A 1203 LPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA 1282 (1321)
T ss_dssp STTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTC
T ss_pred CcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 989 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 989 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
|||+||++|+|+|+|+|+||+++ ++.|++|++.+
T Consensus 1283 D~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1283 DCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQ 1316 (1321)
T ss_dssp SEEEEESSSSEEEEECHHHHHHC-C----------
T ss_pred CEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHH
Confidence 99999999999999999999987 56798888754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-121 Score=1217.84 Aligned_cols=1004 Identities=21% Similarity=0.269 Sum_probs=716.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....++...+...+. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1284)
T 3g5u_A 226 GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS 305 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888899999999999999999999999998888887666655554444433433332222222 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--C-CCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSGL 160 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~-~~~~~~ 160 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..+..++.|+.++++.+++..... . ...+..
T Consensus 306 ~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 385 (1284)
T 3g5u_A 306 YALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQ 385 (1284)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCC
Confidence 3345678888999999999999988888888888999999999999999999999999998754322111 1 111122
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+...++++|+|+||++++||++|||||||||||||+++|+|+++|++|.+.. ++..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 3699999999998655568999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
||||||+|++|++||+|||.+|.+ .+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 5678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||||+||+++++++.+.+.. ..+|+|+|+||||++++..||+|++|++|+++++|+++++++..+.|..+...
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 624 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHH-HHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 99999999999999999998886544 34689999999999999999999999999999999999999888888877654
Q ss_pred hchhhhhhhcccc---CccccCCC--CCCCCCCCCCCCCCccccccccccccchhhhhhh--hccccchHHHHHHHHHHh
Q 001055 388 AGKMEEYVEEKED---GETVDNKT--SKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE--RETGVVSFKVLSRYKDAL 460 (1171)
Q Consensus 388 ~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~l~~y~~~~ 460 (1171)
............. ........ ............... ................+. .......+..+.++....
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1284)
T 3g5u_A 625 QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTR-KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTE 703 (1284)
T ss_dssp TC----------------------------------------------------------CCCCCSCCCTTHHHHHHHHT
T ss_pred hhhcccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhhccccchHHHHHHHHhcch
Confidence 3221110000000 00000000 000000000000000 000000000000000000 001111122222222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhhhh----cccccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 461 GGLWVVLILLLCYFLTETLRVSSSTWLSYW----TDQSSL--KTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 534 (1171)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~----~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 534 (1171)
++.+++.+++.++...+....+.++..+ .+.... ......++..+|.++++...++.+++.++....+.+..
T Consensus 704 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 781 (1284)
T 3g5u_A 704 --WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILT 781 (1284)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233333333333333333332 221110 01112345566777777888888899999999999999
Q ss_pred HHHHHHHHHHHHcCCccccc--cCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001055 535 KRLHDAMLHSILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM---SLWAIM 609 (1171)
Q Consensus 535 ~~l~~~~~~~ll~~p~~~f~--~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 609 (1171)
.++|..++++++++|+.||+ ++++|++++|+++|+..++..+...+..++..+..++..++++++..+. ..++++
T Consensus 782 ~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~ 861 (1284)
T 3g5u_A 782 KRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIV 861 (1284)
T ss_dssp HHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999 5899999999999999999888777777766666655555544443332 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 610 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 689 (1171)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1171)
|+++++...+. +..+..........+.....+.|+++|+++||+|+.++++.+.+.+..+...+..........+..
T Consensus 862 p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1284)
T 3g5u_A 862 PIIAIAGVVEM---KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITF 938 (1284)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222221 111111112222233445678999999999999999999988888777665544333222211111
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001055 690 IRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE 767 (1171)
Q Consensus 690 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e 767 (1171)
.....+..+...+..++.. ...+..+.... ..++.+......++..+............+.+|+.++++.+++
T Consensus 939 ~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1013 (1284)
T 3g5u_A 939 SFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV-----LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH-----HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1111111111111111111 11111111111 1111111122222333322333345667889999999876654
Q ss_pred CCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE
Q 001055 768 APLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846 (1171)
Q Consensus 768 ~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~ 846 (1171)
.....+. ..+.++..+.|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 1014 ~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1014 IDSYSTQ--GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp SSSCCSS--CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred ccccccc--cccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 3221111 11223446789999999999743 23699999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001055 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923 (1171)
Q Consensus 847 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~ 923 (1171)
+||+|++..+++.+|++|+||||+|.+|++||+|||.+.. ..++++++++++.++++++++++|.|++|.++++|.+
T Consensus 1092 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~ 1171 (1284)
T 3g5u_A 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171 (1284)
T ss_dssp SSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCS
T ss_pred ECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCc
Confidence 9999999999999999999999999999999999998654 3578899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|||||||||+|||||+++|+||||||||++||+++++.+++.|++..+++|+|+||||++++..||||+||++|+|++.|
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999889999999999999999
Q ss_pred ChhHHhhcCCChHHHHHHhhc
Q 001055 1004 TPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 1004 ~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
+|+|++++ ++.|++++..+.
T Consensus 1252 ~~~~l~~~-~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1252 THQQLLAQ-KGIYFSMVSVQA 1271 (1284)
T ss_dssp CHHHHHHS-CSHHHHHHHHHC
T ss_pred CHHHHHhC-CCHHHHHHHHHh
Confidence 99999986 578998887643
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-70 Score=731.87 Aligned_cols=512 Identities=20% Similarity=0.282 Sum_probs=412.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHH
Q 001055 504 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 583 (1171)
Q Consensus 504 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~ 583 (1171)
+.+.+.+++++..++.+++.+++.+.+.+...++|.++|+|++++|+.||+++++|++++|+++|++.++..+...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHH
Q 001055 584 MGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 663 (1171)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~ 663 (1171)
+..++.++..++++++..+...++++.++++++++..++.+..++..+......+...+.+.|.++|+++||+|+.++++
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 88888877777777766655444443333333333344444445555555555667788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001055 664 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 740 (1171)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 740 (1171)
.+.+.+..+...+..........+......++..+ +++..+.+.+ ..+..+. ..+..++.+...+..++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~g~lt~-----g~~~~~~~~~~~~~~~l~~ 371 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWV-HDGSLNF-----GDMLTTFSSVMMGSMALGL 371 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSSCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 88887776666555444333332222222222221 1111122222 2333221 2222233344445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEE
Q 001055 741 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGI 819 (1171)
Q Consensus 741 ~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~i 819 (1171)
+......+.....+.+|+.++++.+++.+...+. .....+.+|.|+|+||+|+|++. ..++|+|+||+|+|||++||
T Consensus 372 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vai 449 (1321)
T 4f4c_A 372 AGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA--GRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVAL 449 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC--CCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--cccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEE
Confidence 6666777888899999999999776553221111 12223456789999999999743 35799999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHH
Q 001055 820 VGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALE 898 (1171)
Q Consensus 820 vG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~ 898 (1171)
|||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.++.+ .++++++++++
T Consensus 450 vG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~ 529 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACK 529 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHH
T ss_pred EecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998754 68999999999
Q ss_pred HhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 001055 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978 (1171)
Q Consensus 899 ~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~v 978 (1171)
.++++++++.+|+|++|.++++|.+|||||||||+||||++++|+|||||||||+||+++++.++++|.++.+++|+|+|
T Consensus 530 ~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 530 MANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp HTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred HccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhc
Q 001055 979 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
|||++++..||+|+||++|+|++.|+|+||+++ ++.|++++..+.
T Consensus 610 aHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 610 AHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp CSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred cccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 999999999999999999999999999999986 578998887653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-70 Score=670.89 Aligned_cols=547 Identities=22% Similarity=0.330 Sum_probs=411.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+++.+++.++...+....|.++..++|......... ..+..++.++.+...++.++..++....+.+...++|..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 104 (587)
T 3qf4_A 25 AVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFR 104 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777778888888877543221111 122334445555667777888889999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++.+.+...++++.++++++....++.
T Consensus 105 ~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~ 184 (587)
T 3qf4_A 105 KVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184 (587)
T ss_dssp HHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987777666666666655555555555544333333333333333333334
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ 700 (1171)
+..++..+......+.+.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+......++..+ ++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (587)
T 3qf4_A 185 KKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAV 264 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555667788999999999999999999998877777666655544333222222222222221111 11
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
+..+.+.+. .+..+ ...+..++.+...+..++..+......+.....+.+|+.++++.+++.+.. ..+.+.
T Consensus 265 l~~g~~~v~-~g~lt-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~ 335 (587)
T 3qf4_A 265 LWFGGVLVR-NNQME-----IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALAL 335 (587)
T ss_dssp HHHHHHHHH-TTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCC
T ss_pred HHHHHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCcccc
Confidence 111222222 22222 112222233333344455555556666778889999999998766543211 111111
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++
T Consensus 336 ~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 336 PNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred CCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 23456799999999997555579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++.+|.|+++.+++.+.+||||||||++|||||+
T Consensus 416 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 35788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|+|++.|+|+|++++ .+.|.++
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~ 574 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREI 574 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999998889999999999999989999999999999999999999976 3456666
Q ss_pred HHh
Q 001055 1020 VQS 1022 (1171)
Q Consensus 1020 ~~~ 1022 (1171)
+..
T Consensus 575 ~~~ 577 (587)
T 3qf4_A 575 YES 577 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-69 Score=671.92 Aligned_cols=547 Identities=25% Similarity=0.365 Sum_probs=429.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 464 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH--GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541 (1171)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (1171)
+.+++.+++.++...+....|.++..++|....... ....+..++.++.+...++.+++.++....+.+...++|..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 116 (598)
T 3qf4_B 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKEL 116 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666667777777777777665432211 122344456666677788888999999999999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621 (1171)
Q Consensus 542 ~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 621 (1171)
+++++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++++..+...++++.++++++.+..+
T Consensus 117 ~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~ 196 (598)
T 3qf4_B 117 FEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196 (598)
T ss_dssp HHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777777777777777666666666665555444444444444455
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM-- 699 (1171)
Q Consensus 622 ~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 699 (1171)
+.+..++..+......+++.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (598)
T 3qf4_B 197 VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFA 276 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666778889999999999999999999998888877766655544443333333333333322221
Q ss_pred -HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 700 -IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 700 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
++..+.+.+. .+..+ ...+..++.+...+..++..+...+..++....+++|+.++++.+++.+. ....
T Consensus 277 ~~~~~g~~l~~-~g~ls-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~ 346 (598)
T 3qf4_B 277 LISGFGGWLAL-KDIIT-----VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAV 346 (598)
T ss_dssp HHHHHHHHHGG-GTSSC-----HHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCC
T ss_pred HHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCC
Confidence 1112222222 22221 12223333344445566677777777888899999999999987765321 1111
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
+.++..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+
T Consensus 347 ~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 347 ELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHH
Confidence 223445789999999999754 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.+|++||||||+|.+|++||+||+.+..+ .++++++++++.++++++++++|.|++|.+++.|.+||||||||++||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp HHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999987643 56788999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+|++++ .+.|.
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~ 584 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYY 584 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999976 45777
Q ss_pred HHHHh
Q 001055 1018 KMVQS 1022 (1171)
Q Consensus 1018 ~~~~~ 1022 (1171)
+++..
T Consensus 585 ~~~~~ 589 (598)
T 3qf4_B 585 ELFTS 589 (598)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-68 Score=654.71 Aligned_cols=544 Identities=22% Similarity=0.333 Sum_probs=422.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
++.+++.++...+....+.++..++|....... ....+. .++.++.++..++.++..++....+.+...++|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (582)
T 3b5x_A 28 VVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNH 107 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666666666666654321111 111222 224455566777888888999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++++.+...++++.++++++.....+.+
T Consensus 108 ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b5x_A 108 FMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187 (582)
T ss_pred HHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777777777777777666666666665544444444444444444555
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---W 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 701 (1171)
..++..+......+++.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+.. +
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (582)
T 3b5x_A 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566677888999999999999999999999988888877777666655554444454444443332222 2
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
+.+.+.+.. +..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+. .. .+.+
T Consensus 268 ~~g~~~v~~-g~lt-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~ 336 (582)
T 3b5x_A 268 FLASVDSIR-AELT-----PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GK--YEAE 336 (582)
T ss_pred HHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CC--CCCC
Confidence 222222222 2221 22333344444555666666777777788889999999999876654321 11 1112
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+|
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 337 RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 23467999999999975324799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++||||||+|.+|++||+||+.+.. ..++++++++++.++++++++++|+|++|.+++++.+||||||||++|||||+
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998754 45788899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+|+++. .+.|.++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 575 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQL 575 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999998789999999999999988999999999999999999999875 4567766
Q ss_pred HHh
Q 001055 1020 VQS 1022 (1171)
Q Consensus 1020 ~~~ 1022 (1171)
+..
T Consensus 576 ~~~ 578 (582)
T 3b5x_A 576 HRI 578 (582)
T ss_pred HHH
Confidence 653
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-68 Score=655.26 Aligned_cols=546 Identities=22% Similarity=0.302 Sum_probs=426.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCC-chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+++.+++.++...+....+.++..++|........ ...+. .++.++.++..++.+++.++....+.+...++|.++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b60_A 27 LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG 106 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666667777777777654321111 11111 22444556677788888889999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++++.+...++++.++++++.....+.
T Consensus 107 ~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 186 (582)
T 3b60_A 107 HMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186 (582)
T ss_dssp HHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988777777777777777666666666655444443333333334444455
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 703 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 703 (1171)
+..++..+......+++.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+...++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (582)
T 3b60_A 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFV 266 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566677888999999999999999999999998888887777766666555555555555544443333222
Q ss_pred HHHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 704 ATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 704 ~~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
.++... ..+.. -...+..++.+...+..++..+...+........+++|+.++++.+++.+. .. .+.+
T Consensus 267 ~~~g~~~v~~g~l-----t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~ 336 (582)
T 3b60_A 267 LYAASFPSVMDSL-----TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GK--RVID 336 (582)
T ss_dssp HHHHHSSSTTSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CC--BCCS
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CC--CCCC
Confidence 222211 11111 122333344445555666666777777788889999999999987655321 11 1112
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+..++|
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 337 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 23467999999999974324799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++++|.|++|.+++.+.+||||||||++|||||+
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998754 45788899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+|+++. ++.|.++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 575 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQL 575 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999998789999999999999988999999999999999999999876 4567776
Q ss_pred HHh
Q 001055 1020 VQS 1022 (1171)
Q Consensus 1020 ~~~ 1022 (1171)
+..
T Consensus 576 ~~~ 578 (582)
T 3b60_A 576 HKM 578 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-69 Score=661.43 Aligned_cols=544 Identities=21% Similarity=0.319 Sum_probs=407.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccccCCC----Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH----GP-----LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 538 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~----~~-----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 538 (1171)
+.+++.++...+....|..+...+|....... .. ..+..++.++.+...++.+++.++....+.+...++|
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 97 (578)
T 4a82_A 18 ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIR 97 (578)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555556666555554322111 01 1122233344455667778888999999999999999
Q ss_pred HHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 539 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAA 618 (1171)
Q Consensus 539 ~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 618 (1171)
.+++++++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++.+.+...++.+.++++++..
T Consensus 98 ~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~ 177 (578)
T 4a82_A 98 KKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT 177 (578)
T ss_dssp HHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765554444555555555555555555444333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 619 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG-- 696 (1171)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 696 (1171)
...+.+..++..+......+++.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+.......+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (578)
T 4a82_A 178 VYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDI 257 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666778889999999999999999999988877776665554443333222222222222221
Q ss_pred -HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 697 -GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 697 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
.++++..+.+.+.. +..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+.. .
T Consensus 258 ~~~~v~~~g~~~v~~-g~lt-----~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~ 328 (578)
T 4a82_A 258 GPIIVIGVGAYLAIS-GSIT-----VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---V 328 (578)
T ss_dssp HHHHHHHHHHHHHHH-TSCC-----HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---T
T ss_pred HHHHHHHHHHHHHHc-CCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---C
Confidence 12222222232322 2222 122333344444555666666777777888899999999999776543211 1
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
...+.++..+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++.
T Consensus 329 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~ 408 (578)
T 4a82_A 329 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408 (578)
T ss_dssp TCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS
T ss_pred CccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC
Confidence 11112234567999999999976545799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 856 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
+.+++|++||||||+|.+|++||+||+.+.. ..+++++.++++.++++++++++|.|++|.++++|.+||||||||++|
T Consensus 409 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 409 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred CHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH
Confidence 9999999999999999999999999998654 457888999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||||++|++|+|++.|+|+|+++. ++
T Consensus 489 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~ 567 (578)
T 4a82_A 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QG 567 (578)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TS
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-Cc
Confidence 99999999999999999999999999999999998889999999999999988999999999999999999999976 35
Q ss_pred hHHHHHH
Q 001055 1015 SFSKMVQ 1021 (1171)
Q Consensus 1015 ~~~~~~~ 1021 (1171)
.|.+++.
T Consensus 568 ~~~~~~~ 574 (578)
T 4a82_A 568 AYEHLYS 574 (578)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6766654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=691.15 Aligned_cols=511 Identities=20% Similarity=0.308 Sum_probs=402.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHH
Q 001055 503 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 582 (1171)
Q Consensus 503 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~ 582 (1171)
.+..+|.+++++..++.+++.++....+.+...++|.++|++++++|+.||+++++|++++|+++|++.++..+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888889999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHH
Q 001055 583 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 662 (1171)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~ 662 (1171)
++..++.++..++++++..+...+++++++++++....++.+..++..+......++..+++.|+++|+++||+|+.+++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 88877777777766666655444444444444444444555555555555666677888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 001055 663 MADINGKSMDKNIRYTLVNMGANRWLAIRLE----IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL 738 (1171)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 738 (1171)
+.+.+.+..+...+..........+...... ....+.+|+++.+. ..+ ..+....+. ++.+......++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv-~~g-~~~~g~~~~-----~~~~~~~~~~~~ 341 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLV-ISK-EYSIGQVLT-----VFFSVLIGAFSV 341 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHS-SSCSSCHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-CCCHHHHHH-----HHHHHHHHHHHH
Confidence 8877777766665544332222222222211 12222233332222 222 221111111 111112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEE
Q 001055 739 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKV 817 (1171)
Q Consensus 739 ~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v 817 (1171)
..+...+..+.....+++|+.++++.+++.+...+... ...+..|.|+++||+|+|+++ ..++|+|+||+|++||++
T Consensus 342 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~ 419 (1284)
T 3g5u_A 342 GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEE
Confidence 45555566677888999999999876654322111111 112345789999999999753 247999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHH
Q 001055 818 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEA 896 (1171)
Q Consensus 818 ~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~ 896 (1171)
|||||||||||||+++|+|+++|++|+|.+||+|++.++++++|++||||||+|.+|++||+|||.+.. +.++++++++
T Consensus 420 ~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~ 499 (1284)
T 3g5u_A 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499 (1284)
T ss_dssp EEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998654 4678999999
Q ss_pred HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEE
Q 001055 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 976 (1171)
Q Consensus 897 l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi 976 (1171)
++.++++++++++|.|++|.+++.|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|+...+++|+|
T Consensus 500 ~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i 579 (1284)
T 3g5u_A 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579 (1284)
T ss_dssp HHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 977 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 977 ~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
+||||++++..||+|+||++|+|++.|+|+|+++. .+.|.+++...
T Consensus 580 ~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp EECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred EEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHh
Confidence 99999999999999999999999999999999986 45777776543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-64 Score=633.18 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=156.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhc-CCCCCCCccceecCcEEEEecCC-CC-
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS-WI- 238 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G-~~~~~~g~~~~~~~~i~~v~Q~~-~l- 238 (1171)
.+...|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+| .+. |.......+++|++|++ .+
T Consensus 435 ~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCCC
T ss_pred eeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEcccccccc
Confidence 577779999996 3579999999999999999999999999999999994 331 11111112478999985 34
Q ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCch-HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001055 239 FNATVRDNILFGSAFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts 317 (1171)
...||.||+.+......+++.+.++..++. +..+.. ..+||||||||++|||||+.+|++|||||||+
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 467999999862111156677788888874 344432 25899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE-EecChhHHh
Q 001055 318 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFEDLS 375 (1171)
Q Consensus 318 ~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 375 (1171)
|||+.+++++++.+.. .|+|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 9999999999997765 58999999999999975 7999999999996 588887664
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-65 Score=627.71 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=166.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+||
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEE
Confidence 5899999999964 37999999999999999999999999999999999999999999762 3699
Q ss_pred EEcCCccc-ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+ +..||.+|+..... ... -....+.+.++.+ |+....+....+|||||||||+|||||+.+|+|
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~---~~~---~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDS---SKL---NSNFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHH---HHH---HCHHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEecCccCCCCCcHHHHHHhhhc---cCC---CHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999865 46699988753200 000 0011123334433 455555666778999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHhh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 1010 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~~ 1010 (1171)
|||||||++||+.++..+++.|+++. .++|||+||||++++.. ||||++|++ |++...|+|++++.
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999874 48999999999999987 999999986 88888999998874
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-65 Score=622.69 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=166.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|+
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEE
Confidence 4899999999964 37999999999999999999999999999999999999999999851 3699
Q ss_pred EEcCCccc-ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.. +..||.+++..... ... .....+.+.++. .|+....+....+|||||||||+|||||+.+|+|
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~---~~~---~~~~~~~~~l~~--~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDA---SKL---NSNFYKTELLKP--LGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHH---HHH---TCHHHHHHTTTT--TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEecCCcCCCCCcHHHHHHhhhc---cCC---CHHHHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999876 45699888743100 000 000112333333 3565666777789999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHhh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 1010 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~~ 1010 (1171)
|||||||+|||+.++..+++.|+++. .++|||+||||++++.. ||||++|++ |+++..|+|++++.
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999874 38999999999999987 999999986 78888999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-62 Score=593.62 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=164.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 4899999999964 468889999999999999999999999999999999999999999765 3589
Q ss_pred EEcCCccc-ccccHHhhccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++.. +..||++|+..... .....+.++++. .++....+....+|||||||||+|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~-----------~~l~~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR-----------LNLHRLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT-----------TTGGGCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH-----------cCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 46799999853211 111222333333 345555666678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELL 1009 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~ 1009 (1171)
+|+||||||||++||+.++..+++.|+++. .++|||+||||++++.. ||||++|++ |.+...++|.++.
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999875 47899999999999987 999999986 5666667776654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-62 Score=614.55 Aligned_cols=197 Identities=24% Similarity=0.310 Sum_probs=126.8
Q ss_pred CCCceeeeeEEecCCCEEEEEcCCCccHHHHH---------------------HHHhcCCCCCCCccc------e-----
Q 001055 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI---------------------SAMLGELPPVSDASA------V----- 224 (1171)
Q Consensus 177 ~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl---------------------~~l~G~~~~~~g~~~------~----- 224 (1171)
.+++|+||||+|++||++||+||||||||||+ +++.|+..|+.|.+. .
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 888888888743211 0
Q ss_pred ----ecCcEEEEecCCCC--------------------CcccHHHHHhcCCCCC--H--HHHHHHHHHcCchH---HHhc
Q 001055 225 ----IRGTVAYVPQVSWI--------------------FNATVRDNILFGSAFE--P--ARYEKAIDVTSLQH---DLDL 273 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l--------------------~~~Tv~eni~~g~~~~--~--~~~~~~~~~~~l~~---~~~~ 273 (1171)
.+..+++++|.+.+ ...||+||+.+..... . .+..+. ....+.+ .++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARL-ILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHH-HHHHHHHHHHHHHH
Confidence 11234555554322 2469999998742111 0 000000 0000111 1221
Q ss_pred CCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 274 ~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
+.-.+ ...+....+|||||||||+|||||+.+|+ +|||||||+|||+..+.++++.+.+...+|.|+|+||||++++
T Consensus 189 ~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 189 VGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 267 (670)
T ss_dssp TTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred cCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 11100 01234457899999999999999999998 9999999999999999999998877666799999999999998
Q ss_pred hhcCEEEEE------eCCEEEEecChhHHh
Q 001055 352 SQVDRIILV------HEGMVKEEGTFEDLS 375 (1171)
Q Consensus 352 ~~~d~i~~l------~~G~i~~~g~~~~l~ 375 (1171)
..||+|++| ++|+++++|+++++.
T Consensus 268 ~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 268 LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 889999999 899999999887764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-61 Score=590.40 Aligned_cols=197 Identities=19% Similarity=0.292 Sum_probs=161.6
Q ss_pred EeeEEEeCCCCCCcceeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 790 EDVVLRYRPELPPVLHGLSFTIPPS-----DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 790 ~~vs~~y~~~~~~~l~~vs~~i~~G-----e~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++++|+.. ..+++|+||++.+| |++||+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 4667888643 25899999999998 8899999999999999999999999999972 21 2469
Q ss_pred EEEcCCcc-cccccHHhhccC--CCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPV-LFSGTVRFNLDP--FSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~-lf~~tv~~nl~~--~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||+.. .|..|+++|+.. ... .......++++.. ++....+....+|||||||||+|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL-----------RIDDIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH-----------TSTTTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 457799998742 111 1233333334333 34445566678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||+|||+.+...+.+.|+++. .++|||+||||++++.. ||||++|++ |+++..|+|++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999999864 48999999999999987 999999996 999999999999863
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-57 Score=561.54 Aligned_cols=381 Identities=26% Similarity=0.378 Sum_probs=326.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (578)
T 4a82_A 177 TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTD 256 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999988887777665555555444433333322
Q ss_pred H--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCCCC
Q 001055 84 L--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSG 159 (1171)
Q Consensus 84 ~--~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~ 159 (1171)
+ +.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..|++||.++++.+++...+.. +.+..
T Consensus 257 ~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 336 (578)
T 4a82_A 257 IGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIK 336 (578)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCC
Confidence 2 3456678888899999999999999999999999999999999999999999999999987654221111 11222
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecC
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 227 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~ 227 (1171)
...|+++|++|+|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++
T Consensus 337 ~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp SCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 346999999999974 3468999999999999999999999999999999999999999886532 234
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
.||||||+|++|++||+|||.+|.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~ 495 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999864 456778899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
|+++|||||||+||+++++.+.+.+.+. .+++|+|+||||++.+..||||++|++|+++++|+++++.+..+.|.+++.
T Consensus 496 p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 496 PPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999998866544 467999999999999999999999999999999999999988777777653
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-57 Score=557.92 Aligned_cols=382 Identities=24% Similarity=0.359 Sum_probs=322.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI-- 81 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~-- 81 (1171)
+..++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (587)
T 3qf4_A 179 LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVN 258 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899999999999999999999999999999999888887765555444333333332222222211
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSG 159 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~ 159 (1171)
...+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++||.++++.+++...+.. ..++.
T Consensus 259 ~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 338 (587)
T 3qf4_A 259 MGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNV 338 (587)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCC
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCC
Confidence 2234456788888999999999999999999999999999999999999999999999999987653221111 11122
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecC
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 227 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~ 227 (1171)
...|+++|++|+|+. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++
T Consensus 339 ~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred CCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 346999999999974 3568999999999999999999999999999999999999999886533 245
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
+|+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999864 567788889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
|+++|||||||+||+++++.+.+.+.+. .+|+|+|+||||++.+..||||++|++|+++++|+++++.++.+.|++++.
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 576 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYE 576 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999999976654 468999999999999999999999999999999999999988887887765
Q ss_pred H
Q 001055 387 N 387 (1171)
Q Consensus 387 ~ 387 (1171)
.
T Consensus 577 ~ 577 (587)
T 3qf4_A 577 S 577 (587)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-56 Score=549.56 Aligned_cols=380 Identities=23% Similarity=0.331 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.+++++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (582)
T 3b5x_A 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA 262 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888999999999999999999999999999988887765555444433333333333322222222
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcE
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 163 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i 163 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++......+.++....|
T Consensus 263 ~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i 342 (582)
T 3b5x_A 263 LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEV 342 (582)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeE
Confidence 22346678888899999999999999999999999999999999999999999999999987553221111111123469
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.|||
T Consensus 343 ~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 343 DVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 999999999742 367999999999999999999999999999999999999999886532 2456999
Q ss_pred EecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 232 VPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|||+|++|++||+|||.++. ..++++++++++.+++.+.++.+|+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 422 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i 501 (582)
T 3b5x_A 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501 (582)
T ss_pred EcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999985 3567788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||+||+++++.+.+.+.+.. +|+|+|+||||++.+..||+|++|++|+++++|+++++.+..+.|.+++..
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b5x_A 502 LILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI 578 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 99999999999999999998776654 589999999999999999999999999999999999999888888877653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-57 Score=559.65 Aligned_cols=382 Identities=24% Similarity=0.363 Sum_probs=328.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.+++++..++..+..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (598)
T 3qf4_B 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNN 272 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888889999999999999999999999999999999999998888777766666555444333333332
Q ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC-CCCCCC
Q 001055 84 --LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSGL 160 (1171)
Q Consensus 84 --~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~ 160 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++||.++++.+++...+.+ +..+..
T Consensus 273 ~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 352 (598)
T 3qf4_B 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVR 352 (598)
T ss_dssp HHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Confidence 23456678888899999999999999999999999999999999999999999999999987654322111 112223
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. ++++
T Consensus 353 ~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 46999999999973 467999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
||||||+|++|++||+|||.++.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 4567788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
++||||||||+||+++++.+.+.+.+. .+|+|+|+||||++.+..||+|++|++|+++++|+++++.+..+.|.+++..
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 589 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTS 589 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHH-HTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999877665 3689999999999999999999999999999999999999888888887764
Q ss_pred h
Q 001055 388 A 388 (1171)
Q Consensus 388 ~ 388 (1171)
+
T Consensus 590 ~ 590 (598)
T 3qf4_B 590 Q 590 (598)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-56 Score=550.14 Aligned_cols=381 Identities=24% Similarity=0.327 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV- 83 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~- 83 (1171)
..++.+++++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (582)
T 3b60_A 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASL 261 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888899999999999999999999999999999988887765555444433333333333222222221
Q ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCc
Q 001055 84 -LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA 162 (1171)
Q Consensus 84 -~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 162 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++......+.++....
T Consensus 262 ~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 341 (582)
T 3b60_A 262 ALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGD 341 (582)
T ss_dssp HHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCc
Confidence 2234567778888899999999999999999999999999999999999999999999998765322111111122346
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.||
T Consensus 342 i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 342 LEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp EEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 9999999999732 367999999999999999999999999999999999999999876532 234699
Q ss_pred EEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 231 YVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||||+|++|++||+|||.++. ..+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 421 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 421 LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999985 356778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
++|||||||+||+++++.+.+.+.+.. +|+|+|+||||++.+..||||++|++|+++++|+++++.+..+.|.+++..
T Consensus 501 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b60_A 501 ILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578 (582)
T ss_dssp EEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 999999999999999999998776654 489999999999999999999999999999999999998877777777653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=497.48 Aligned_cols=270 Identities=31% Similarity=0.505 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHH
Q 001055 749 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 828 (1171)
Q Consensus 749 ~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKS 828 (1171)
+..+.+++|+.++++.+.+.... ....+..+..+.|+++||+|+|++. .++|+||||+|++||++||+||||||||
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 34456777877776544332110 0111112235679999999999753 4799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHH
Q 001055 829 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIR 907 (1171)
Q Consensus 829 TLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~ 907 (1171)
||+++|+|+++|++|+|.++|+++..++...+|++||||||+|.+|++||++||.+.. ...+++++++++.+++.+++.
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 356788999999999999999
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q 001055 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 987 (1171)
Q Consensus 908 ~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 987 (1171)
.+|.|+++.+++.+.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++++..
T Consensus 175 ~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred hccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 988 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 988 ~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
||+|++|++|+|++.|+|+++++. .+.|.+++..+
T Consensus 255 aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q 289 (306)
T 3nh6_A 255 ADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQ 289 (306)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHH
Confidence 999999999999999999999986 46787777643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-50 Score=440.02 Aligned_cols=237 Identities=34% Similarity=0.551 Sum_probs=216.9
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.+|+++||+|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 35999999999942223699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|||||++.+|..||++|+.+.. ...++++.++++.+++.++++++|.|+++.+++.+.+|||||||||+|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999889999998653 245677889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+|||||||++||+.+++.+++.|+++.+++|||+|||+++.+..||+|++|++|++++.|+++++++.+.+.|.+++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999886789999999999998789999999999999999999998764556665543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=447.79 Aligned_cols=260 Identities=25% Similarity=0.456 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCC-CC-CCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCcc
Q 001055 126 ITQVVNANVSLKRMEEFLLAEEKILLP-NP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 203 (1171)
Q Consensus 126 ~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsG 203 (1171)
+..+..+.++++|+.++++.+++.... .+ +.......|+++|++|+|+. ++++|+||||+|++||++||+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 445667889999999999865532211 11 11122346999999999973 357999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHH
Q 001055 204 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 270 (1171)
Q Consensus 204 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~ 270 (1171)
||||+++|+|+++|++|.+.. ++..||||||+|++|++||+|||.++.. ...+++.++++.+++.+.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999886532 2346999999999999999999999864 456788899999999999
Q ss_pred HhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcch
Q 001055 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 350 (1171)
Q Consensus 271 ~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~ 350 (1171)
++.+|.|++|.+|++|.+|||||||||+|||||+.+|+|||||||||+||+.+++.+.+.+.+. .+++|+|+||||++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV-CANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH-HTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEEcChHH
Confidence 9999999999999999999999999999999999999999999999999999999999877654 357999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 001055 351 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388 (1171)
Q Consensus 351 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 388 (1171)
+..||+|++|++|+|+++|+++++++..+.|..++...
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q 289 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999998888888887643
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-48 Score=482.05 Aligned_cols=212 Identities=22% Similarity=0.354 Sum_probs=156.7
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHH-HhcCC-------CC----------------
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT-LFRIV-------EL---------------- 840 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~-l~g~~-------~p---------------- 840 (1171)
..++++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ .|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999976 26999999999999999999999999999996 66554 23
Q ss_pred --CCc-------eEEECCEecCCCCh----------HHHhhhe---------EEEcCCcc--------------------
Q 001055 841 --ERG-------RILIDGFDIAKFGL----------MDLRKIL---------GIIPQSPV-------------------- 872 (1171)
Q Consensus 841 --~~G-------~I~i~g~~i~~~~~----------~~~r~~i---------~~v~Q~~~-------------------- 872 (1171)
.+| .|.++|.++...+. +.+|+.+ ||.++...
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988764332 2333322 33222110
Q ss_pred --c------------------------cc-ccHHhhccC--------CCCCCHHHHHHHHHHhcHHHHHHHccCCcch-h
Q 001055 873 --L------------------------FS-GTVRFNLDP--------FSEHSDADLWEALERAHLKDAIRRNSLGLDA-Q 916 (1171)
Q Consensus 873 --l------------------------f~-~tv~~nl~~--------~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~ 916 (1171)
+ +. .++.+|+.. +... + . .....+.++.+ |+.. .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~-~-~------~~~~~~~L~~~--gL~~~~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE-S-A------IFRALDTLREV--GLGYLR 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS-H-H------HHHHHHHHHHT--TCTTSB
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc-h-H------HHHHHHHHHHc--CCCccc
Confidence 0 11 144444321 1110 0 0 11234555554 4444 3
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccC---CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEE
Q 001055 917 VSEAGENFSVGQRQLLSLSRALLRR---SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRIL 992 (1171)
Q Consensus 917 ~~~~~~~LSgGqkqrl~lArall~~---p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~ 992 (1171)
.++...+|||||||||+|||+|+++ |+||||||||+|||+.+.+.+++.|+++. .++|||+||||++++..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 5677789999999999999999996 69999999999999999999999999875 5899999999999997799999
Q ss_pred EE------eCcEEEEecChhHHhhcCC
Q 001055 993 LL------DSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 993 vl------~~G~i~~~g~~~el~~~~~ 1013 (1171)
+| ++|+|++.|+++++++...
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 6999999999999987543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-48 Score=432.40 Aligned_cols=236 Identities=31% Similarity=0.483 Sum_probs=212.2
Q ss_pred ccEEEEeeEEEeCC-CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 785 GSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 785 g~i~~~~vs~~y~~-~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
+.|+++||+++|++ ...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 12369999999999999999999999999999999999999999999999999988777788889
Q ss_pred eEEEcCCcccccccHHhhccCCCC-CCH-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSE-HSD-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~-~~~-~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||||++.+|..||++|+.+... ..+ +++.++++..++.++++.+|.|+++..++.+.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999986532 222 556677788889999999999999999998999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
|+||||||||++||+.++..+++.|+++.+ ++|||+||||++.+..||+|++|++|++++.|+++++++.. +.|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCc-HHHHHH
Confidence 999999999999999999999999998754 79999999999998889999999999999999999998653 566655
Q ss_pred HH
Q 001055 1020 VQ 1021 (1171)
Q Consensus 1020 ~~ 1021 (1171)
+.
T Consensus 254 ~~ 255 (271)
T 2ixe_A 254 VE 255 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-48 Score=428.24 Aligned_cols=233 Identities=34% Similarity=0.592 Sum_probs=212.1
Q ss_pred cEEEEeeEEEeCCCC-CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.++|.++...+...+|+.|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 499999999997531 3699999999999999999999999999999999999987 89999999999888878889999
Q ss_pred EEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+||||++.+|+.||++|+.+.. ...++++.++++.+++.+++..+|.++++.+++.+.+|||||||||+|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999889999997643 235667888899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
||||||||++||+.+++.+++.|+++.+++|||+||||++.+..||+|++|++|++++.|+++++++.. +.|.+++
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 251 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN-GEYAEMW 251 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcC-hHHHHHH
Confidence 999999999999999999999999987789999999999998789999999999999999999998653 4555444
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=451.56 Aligned_cols=238 Identities=35% Similarity=0.688 Sum_probs=221.7
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
..|+..+.|+++||+|+|+....++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++.
T Consensus 12 ~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 12 DIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHH
T ss_pred cCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChH
Confidence 3466667899999999996433479999999999999999999999999999999999998 899999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
.+|+.||||||++.+|..||++|+.++....++++.++++.+++.+++++.|.++++.+++.+.+|||||||||+|||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987666678889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+++|+|||||||||+||+.++..+++.|++...++|+|+||||++.+..||||++|++|+|++.|+|+|+..++...|.
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 9999999999999999999999999999987778999999999988878999999999999999999999987765554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-49 Score=432.33 Aligned_cols=224 Identities=34% Similarity=0.574 Sum_probs=208.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999432 369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCcccccccHHhhccCC-C-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSGTVRFNLDPF-S-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~-~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||++.+|..|+++|+.+. . ...++++.++++.+++.++++++|.|+++.+++.+.+|||||||||+|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999875 2 3456778899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+++.+++.|+++.+++|||+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999987778999999999999878999999999999999999999764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-46 Score=471.59 Aligned_cols=211 Identities=25% Similarity=0.373 Sum_probs=151.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHH---------HHHhcCCCCC------Cc------e
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------NTLFRIVELE------RG------R 844 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl---------~~l~g~~~p~------~G------~ 844 (1171)
.+++++++ ...|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .
T Consensus 589 ~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 589 SLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp EEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred eEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 46666653 2479999999999999999999999999997 3444443332 23 3
Q ss_pred EEECCEecCCCCh---H-------HHh-------------------------------hheEEEcCCcccccc-------
Q 001055 845 ILIDGFDIAKFGL---M-------DLR-------------------------------KILGIIPQSPVLFSG------- 876 (1171)
Q Consensus 845 I~i~g~~i~~~~~---~-------~~r-------------------------------~~i~~v~Q~~~lf~~------- 876 (1171)
|.+++.++...+. . .+| +..|+++|+..++..
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~ 741 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDV 741 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccc
Confidence 5555555433211 0 111 235677776654432
Q ss_pred --------------------------cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001055 877 --------------------------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 929 (1171)
Q Consensus 877 --------------------------tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqk 929 (1171)
|+.+++.++..... .....+.++.+ |+.. .+++.+.+||||||
T Consensus 742 c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~--------~~~~~~~L~~v--GL~~~~lgq~~~~LSGGEr 811 (916)
T 3pih_A 742 CKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPS--------IKRTLQVLHDV--GLGYVKLGQPATTLSGGEA 811 (916)
T ss_dssp TTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHH--------HHHHHHHHHHT--TGGGSBTTCCSTTCCHHHH
T ss_pred ccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchh--------HHHHHHHHHHc--CCchhhccCCccCCCHHHH
Confidence 33333333322110 01122334443 4433 35677889999999
Q ss_pred HHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEE------eCcEE
Q 001055 930 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 999 (1171)
Q Consensus 930 qrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl------~~G~i 999 (1171)
|||+|||||+++| +||||||||+|||+.+.+.+++.|+++. .|+|||+||||++++..||+|++| ++|+|
T Consensus 812 QRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~I 891 (916)
T 3pih_A 812 QRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYI 891 (916)
T ss_dssp HHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEE
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEE
Confidence 9999999999876 7999999999999999999999999875 489999999999999889999999 89999
Q ss_pred EEecChhHHhhcCC
Q 001055 1000 LEYDTPEELLSNEG 1013 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~ 1013 (1171)
++.|+|+++++.++
T Consensus 892 v~~Gtpeel~~~~~ 905 (916)
T 3pih_A 892 VATGTPEEIAKNPH 905 (916)
T ss_dssp EEEESHHHHHSCTT
T ss_pred EEEcCHHHHHhCCc
Confidence 99999999998654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=404.00 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=193.0
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|+++||+++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 45999999999964334799999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+|+||++.+|+.||++|+.+.....+....+.++.+++.++++.+|.+.++.+++.+.+|||||||||+|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998899999986544444456667778888999999998888888888999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHH-HHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+++.+++.+ ++...++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999974 554457899999999999877999999999999999999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=425.24 Aligned_cols=227 Identities=25% Similarity=0.421 Sum_probs=192.2
Q ss_pred ccEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---
Q 001055 785 GSIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 859 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~--- 859 (1171)
..|+++||+++|+.+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996431 35899999999999999999999999999999999999999999999999999888765
Q ss_pred HhhheEEEcCCcccccc-cHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 860 LRKILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+|++||||||++.+|.. ||++|+.+. ......+..+ .+.+.++.+ |+....+....+|||||||||+||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHH-----HHHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 47789999999998865 999999642 1122222211 122333332 555566677789999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+.+|+||||||||++||+.+.+.+++.|+++. .+.|||+||||++.+.. ||||++|++|+|++.|++++++..+
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999999875 38999999999999987 9999999999999999999999876
Q ss_pred CChHHH
Q 001055 1013 GSSFSK 1018 (1171)
Q Consensus 1013 ~~~~~~ 1018 (1171)
...+.+
T Consensus 256 ~~~~~~ 261 (366)
T 3tui_C 256 KTPLAQ 261 (366)
T ss_dssp CSHHHH
T ss_pred CcHHHH
Confidence 655543
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=460.39 Aligned_cols=211 Identities=26% Similarity=0.351 Sum_probs=156.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cCC-------CCCCc-------------e
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIV-------ELERG-------------R 844 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~-g~~-------~p~~G-------------~ 844 (1171)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 489999852 3799999999999999999999999999999854 221 12233 4
Q ss_pred EEECCEecCCCC---hH-------HH---------hhheEEEcCCcccc-------------------------------
Q 001055 845 ILIDGFDIAKFG---LM-------DL---------RKILGIIPQSPVLF------------------------------- 874 (1171)
Q Consensus 845 I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 874 (1171)
|.++|.++...+ +. .. .+.+||+||...+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888874322 11 11 23468888864321
Q ss_pred ------------------------cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001055 875 ------------------------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 929 (1171)
Q Consensus 875 ------------------------~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqk 929 (1171)
..|+.+|+.++.... .+ ....+.++.+ |+.. ..+....+||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~------~~~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KI------KRKLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HH------HHHHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hH------HHHHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 012233332222110 00 1123455554 5555 56777789999999
Q ss_pred HHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEE------eCcEE
Q 001055 930 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 999 (1171)
Q Consensus 930 qrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl------~~G~i 999 (1171)
|||+|||+|+++| +||||||||+|||+.+.+.+++.|+++. .|.|||+||||++++..||||++| ++|+|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEE
Confidence 9999999999875 9999999999999999999999999875 589999999999998779999999 78999
Q ss_pred EEecChhHHhhcCC
Q 001055 1000 LEYDTPEELLSNEG 1013 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~ 1013 (1171)
++.|+++++.+...
T Consensus 932 v~~g~~~el~~~~~ 945 (972)
T 2r6f_A 932 VAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEESHHHHHTCTT
T ss_pred EEecCHHHHHhCch
Confidence 99999999987543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=405.63 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=194.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .|+|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 899999999974234799999999999999999999999999999999999999999999998 3999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
|||+|.++..||++|+.+.....++...++++.+++.+.+..+|.++++.+++.+.+|||||||||+|||||+++|+|||
T Consensus 71 v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 71 VPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp ECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred EcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988889999998654433445566777777778888888888888888999999999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHH---HHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 947 LDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~---~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
|||||++||+.++..+++.|. +..+++|+|+||||++.+..||+|++|++|++++.|+++++++.. ..|.+++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-~~~~~~~ 226 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFL 226 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhcc-HHHHHHH
Confidence 999999999999999999994 334589999999999998779999999999999999999998653 3454433
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-46 Score=412.29 Aligned_cols=218 Identities=27% Similarity=0.497 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 49999999999754 35999999999999999999999999999999999999999999999999984 2234467889
Q ss_pred eEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
||||||+| .+|..||++|+.+.. .....+..+. +.+.++. .|++...+..+.+|||||||||+|||||
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHH--TTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 99999998 477789999996421 2233322221 2233333 3555666677788999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-C-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+.+|++|||||||++||+.+...+++.|+++. + ++|||+||||++.+.. ||||++|++|++++.|++++++..
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999875 3 8999999999999987 999999999999999999999754
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=400.47 Aligned_cols=217 Identities=21% Similarity=0.375 Sum_probs=185.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 369999999999999999999999999999999999999999999999999988776655 4559
Q ss_pred EEEcCCcccccc-cHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||+||++.+|.. |++||+.+.. .....+..+. +.+.++.++ |++...++.+.+|||||||||+|||||+.+
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999876 9999997532 1111222221 233444443 355556677889999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|++|||||||++||+.+++.+++.|+++. .++|||+||||++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999999875 58999999999998866 99999999999999999999874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=399.97 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=178.8
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 860 (1171)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 259999999999999999999999999999999999999999999999999998887654
Q ss_pred hhheEEEcCCcccccc-cHHhhccCC---C---CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPF---S---EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLL 932 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~---~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl 932 (1171)
|+.||||||++.+|.. ||++|+.+. . ....++..+ .+.+.++. .|+... .+..+.+|||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKM--AELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHH--TTCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHH--CCCChhhhhCChhhCCHHHHHHH
Confidence 4569999999999876 999998531 1 222222211 12223333 244443 3666788999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+||||++.+..||||++|++|+|++.++++++.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999999999999999999999999999998753 89999999999977669999999999999999887764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=401.04 Aligned_cols=219 Identities=26% Similarity=0.435 Sum_probs=186.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ......+|++
T Consensus 24 ~l~i~~l~~~y~~~--~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 49999999999643 6999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++. .|++...+..+.+|||||||||+|||||
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~L~~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDK--VGLKDKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--CCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999998876 9999996521 22222111 112334444 3565666677789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
+.+|++|||||||++||+.+++.+++.|+++. +++|||+||||++.+.. ||+|++|++|++++.|+++++++.+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 99999999999999999999999999999875 47899999999999986 99999999999999999999986543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=416.67 Aligned_cols=219 Identities=24% Similarity=0.378 Sum_probs=185.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC--ChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--GLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~--~~~~~r~~ 863 (1171)
.|+++||+++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....+++
T Consensus 4 ~l~i~~ls~~y~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 38999999999753 699999999999999999999999999999999999999999999999998321 22235678
Q ss_pred eEEEcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
||||||++.+|.. ||++|+.+... ... +++.++++.+ |++...++...+|||||||||+||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----------GISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH-----------TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHH
Confidence 9999999999965 99999976422 111 2233444443 455556666788999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+.+|++||||||||+||+.++..+++.|.+.. .+.|+|+||||++++.. ||||++|++|+|++.|+|+++..++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998776653 48999999999999877 9999999999999999999999876
Q ss_pred CChHH
Q 001055 1013 GSSFS 1017 (1171)
Q Consensus 1013 ~~~~~ 1017 (1171)
...+.
T Consensus 231 ~~~~~ 235 (359)
T 3fvq_A 231 ADLDA 235 (359)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 54443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=403.10 Aligned_cols=212 Identities=23% Similarity=0.339 Sum_probs=185.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~~--~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQQ--ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCCe--eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 49999999999754 7999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEcCCccc-ccccHHhhccCCCC-----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSE-----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~-----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|+||++.+ |..||++|+.+... ...+.+.++++.. |+....+....+|||||||||+|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-----------DCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT-----------TCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999976 46699999965321 1123344444443 3444445556789999999999999999
Q ss_pred c------CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 940 R------RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 940 ~------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+ +|++|||||||+|||+.+...+.+.|+++.+ ++|||+||||++.+.. ||||++|++|++++.|++++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998753 4699999999999986 99999999999999999999874
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=391.66 Aligned_cols=216 Identities=35% Similarity=0.698 Sum_probs=190.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+. +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+. +.+.|+|+||+|++|+.
T Consensus 6 ~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE-ECCEEEEEecCCcccCC
Confidence 5999999999963 246899999999999999999999999999999999999999987654 45679999999999888
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+||+.++......++.+.++.+++.+.++.++.++.+.+++.+.+|||||||||+|||||+.+|+++||||||++||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999865455556667788899888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcch
Q 001055 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 322 ~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
.+++.+++.++....+++|+|+||||++++..||++++|++|++++.|+++++.+..+
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 221 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQP 221 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcCh
Confidence 9999999864333335899999999999988899999999999999999998876533
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=393.10 Aligned_cols=223 Identities=29% Similarity=0.463 Sum_probs=197.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 7 ~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 5899999999942 1357999999999999999999999999999999999999999876532 12359
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||+||++.+|+.||+|||.++.. .+.+++.++++.+++.+.++.+|.+..+.+++.+.+|||||||||+|||||+.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999998743 34567778889999999999999888899999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-chHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLME 386 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 386 (1171)
++||||||++||+.+++.+++.+.+.. +|+|+|+||||++.+..||++++|++|++++.|+++++... .+.|..++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999877663 58999999999999888999999999999999999998766 556665543
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=400.30 Aligned_cols=219 Identities=25% Similarity=0.368 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----------C
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----------F 855 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----------~ 855 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 39999999999643 69999999999999999999999999999999999999999999999999861 3
Q ss_pred Ch---HHHhhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCCh
Q 001055 856 GL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSV 926 (1171)
Q Consensus 856 ~~---~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSg 926 (1171)
+. ..+|+.||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++.+ |++.. .+....+|||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLSG 156 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSCH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCCH
Confidence 33 3467789999999988876 9999996521 12221111 1123344442 55555 5666778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++.+.. ||+|++|++|++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998875 47899999999999976 99999999999999999
Q ss_pred hhHHhhcCC
Q 001055 1005 PEELLSNEG 1013 (1171)
Q Consensus 1005 ~~el~~~~~ 1013 (1171)
++++...+.
T Consensus 237 ~~~~~~~~~ 245 (262)
T 1b0u_A 237 PEQVFGNPQ 245 (262)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCcc
Confidence 999986543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-44 Score=414.85 Aligned_cols=220 Identities=22% Similarity=0.335 Sum_probs=189.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.|||
T Consensus 4 l~~~~l~~~yg~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEeEEEEECCE--EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 8999999999753 699999999999999999999999999999999999999999999999999887764 467999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|||++.+|.. ||++|+.+.. .....+..+ .+.+.++. .|++...++...+|||||||||+|||||+.+|
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~-----~v~~~l~~--~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHH-----HHHHHHHH--TTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 9999999965 9999997531 222322221 12233333 35566666777899999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+||||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++...+...|.
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v 230 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHH
Confidence 99999999999999999999999998753 7999999999999877 999999999999999999999987665554
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=391.11 Aligned_cols=223 Identities=51% Similarity=0.902 Sum_probs=195.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+. +.+.|||+||+|+++..
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~i~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-IKGSVAYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE-ECSCEEEECSSCCCCSE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEEEEcCCCcCCCc
Confidence 4899999999963 246799999999999999999999999999999999999999987654 56679999999998899
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+|||.++.....+...++.+.+++.+.+..++.++.+.++..+.+|||||||||+|||||+.+|+++||||||++||+
T Consensus 81 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999999765444456677788888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 322 HVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 322 ~~~~~l~~~l~--~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
.+++.+++.+. +...+|+|+|+||||++++..||++++|++|++++.|+++++.+....|..+..
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp HHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 99999998764 222358999999999999888999999999999999999998776666665544
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=395.47 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=184.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.|
T Consensus 14 ~~l~i~~l~~~y~~~--~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECCE--EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 459999999999643 69999999999999999999999999999999999999999999999999876 456678889
Q ss_pred EEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
||+||++.+|.. ||++|+.++. .....+.. ..+.+.++.+ |++...+..+.+|||||||||+|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE-----EMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998876 9999996531 11221111 1122333332 45555566677899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||++||+.+...+++.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999875 47999999999999987 999999999999999999998753
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=398.39 Aligned_cols=214 Identities=24% Similarity=0.305 Sum_probs=184.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i 864 (1171)
.|+++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.|
T Consensus 7 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECCE--eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 49999999999653 699999999999999999999999999999999999999999999999999876643 357789
Q ss_pred EEEcCCccccc-ccHHhhccCCCCC----------------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFSEH----------------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~~~----------------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
|||||++.+|. .||+||+.+.... ...+. ...+.+.++.+ |++...++.+.+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999998886 4999999653111 11111 12234555553 6777777778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||||+|||||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++.+.. ||+|++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999875 47999999999999876 999999999999999999
Q ss_pred hHH
Q 001055 1006 EEL 1008 (1171)
Q Consensus 1006 ~el 1008 (1171)
+++
T Consensus 238 ~~~ 240 (257)
T 1g6h_A 238 EEE 240 (257)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-44 Score=408.36 Aligned_cols=215 Identities=22% Similarity=0.375 Sum_probs=185.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|||
T Consensus 4 l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 8999999999643 699999999999999999999999999999999999999999999999999877653 578999
Q ss_pred EcCCcccccc-cHHhhccCCCCC---CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH---SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~---~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. ||++|+.+.... .. +++.++++.. |++...+....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----------LIDNLLDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999965 999999764221 11 2233334333 555556666778999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccH
Confidence 999999999999999999999999999998753 7899999999999876 9999999999999999999998765443
Q ss_pred H
Q 001055 1016 F 1016 (1171)
Q Consensus 1016 ~ 1016 (1171)
|
T Consensus 229 ~ 229 (359)
T 2yyz_A 229 F 229 (359)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=391.41 Aligned_cols=223 Identities=28% Similarity=0.467 Sum_probs=195.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++| +|.+.. .+..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999743235799999999999999999999999999999999999987 665422 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|+||+|.+|+.||+|||.++.. ...+++.++++.+++.+.++.++.+.++.+++.+.+|||||||||+|||||+.+|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999998899999998743 34566777888899999888899888888999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+|||||||++||+.+++.+++.+.+.. +++|+|+||||++++..||+|++|++|++++.|+++++......|..++.
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 999999999999999999999776654 48999999999999888999999999999999999998766555655543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=388.73 Aligned_cols=210 Identities=21% Similarity=0.282 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh-
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR- 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r- 861 (1171)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999975 36999999999999999999999999999999999999999999999999998776543 34
Q ss_pred hheEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|+||||++.+|.. |+++|+.+.. .....+.. ..+.+.++.+ |+....+....+|||||||||+||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 679999999988865 9999996421 11111111 1233444443 55555666778899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+||||++.+..||+|++|++|++++.|+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999875 4799999999999885599999999999999886
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-44 Score=407.72 Aligned_cols=221 Identities=26% Similarity=0.449 Sum_probs=187.0
Q ss_pred ccEEEEeeEEEe-CCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 785 GSIKFEDVVLRY-RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 785 g~i~~~~vs~~y-~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
..|+++||+++| ++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 459999999999 54 369999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++. .|++...+....+|||||||||+|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~--~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRF--MRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--cCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999975 9999997521 12222211 112333333 35555666677889999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
.+|++|||||||++||+.+++.+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999998753 7999999999999877 99999999999999999999987654433
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=393.26 Aligned_cols=220 Identities=26% Similarity=0.480 Sum_probs=195.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999887532 234699
Q ss_pred EEecCCCCCcccHHHHHhcC-C-CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 231 YVPQVSWIFNATVRDNILFG-S-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+||++.+|+.||+|||.++ . ..+.+++.++++.+++.+.++.+|.+..+.+++.+.+|||||||||+|||||+.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999987 3 245567788889999998888899888889999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+|||||||++||+.+++.+++.+.+.. +|+|+|+||||++++..||++++|++|++++.|+++++......+..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999877665 6899999999999988899999999999999999999876655555554
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-44 Score=395.35 Aligned_cols=214 Identities=22% Similarity=0.338 Sum_probs=181.7
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
|+++||+++|+.+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 89999999996211 3699999999999999999999999999999999999999999999999998642 67788
Q ss_pred eEEEcCCc--ccccccHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSP--VLFSGTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~--~lf~~tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
||||||+| .++..|+++|+.+... ...+++.++++..++.. ....+....+|||||||||+||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---------DSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---------HHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---------cccccCChhhCCHHHHHHHHHH
Confidence 99999996 4567799999975321 12344555566554430 0334445568999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++.+.. ||++++|++|++++.|+++++++..
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 99999999999999999999999999999999875 47999999999999987 9999999999999999999987654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=408.09 Aligned_cols=219 Identities=23% Similarity=0.390 Sum_probs=185.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|||
T Consensus 4 l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp EEEEEEEEESSSS--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 8999999999643 699999999999999999999999999999999999999999999999999877653 578999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|||++.+|.. ||++|+.+.. .....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.+|
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~--~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKM--LHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHH--TTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999975 9999997521 12222211 112333333 25555556667789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
++||||||||+||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 229 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999998753 7999999999999876 99999999999999999999987654433
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=406.90 Aligned_cols=220 Identities=21% Similarity=0.349 Sum_probs=182.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++||
T Consensus 11 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 39999999999643 699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|.. ||++|+.+... ....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~--~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-----KRVRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHH-----HHHHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 99999976432 2222221 112333443 3566666777789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|++||||||||+||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 237 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 999999999999999999999999998753 7899999999999876 99999999999999999999987655444
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=391.70 Aligned_cols=226 Identities=26% Similarity=0.411 Sum_probs=193.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+...++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3699999999996422367999999999999999999999999999999999999999876532 1235
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCC-CH-HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAF-EP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||||||++.+|+.||+|||.++... .. ++..+..+..++.+.++.++.+..+.++..+.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999888999999987432 22 445556667788888888887777778888999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
|++|||||||++||+.+++.+++.+.+... .|+|+|+||||++++..||+|++|++|++++.|+++++......|..++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999997766543 4899999999999988899999999999999999999877666666654
Q ss_pred H
Q 001055 386 E 386 (1171)
Q Consensus 386 ~ 386 (1171)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=386.99 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=180.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..|++|||
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987533 34678999
Q ss_pred EcCCcccccc-cHHhhccCCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||++.+|.. |+++|+.+.... .... ....+.+.++. .|++...+....+||||||||++|||||+.+|++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~-----~~~~~~~~l~~--~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVE-----RDRRVREMAEK--LGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHH-----HHHHHHHHHHT--TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCch-----HHHHHHHHHHH--cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998876 999999764322 1110 01123344444 3555556667788999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||||||++||+.+++.+++.|+++.+ ++|||++|||++.+.. ||+|++|++|++++.|+++++++..
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999998753 7999999999999876 9999999999999999999998654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-44 Score=398.47 Aligned_cols=215 Identities=22% Similarity=0.327 Sum_probs=182.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~~--~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECCE--EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987 6677778889
Q ss_pred eEEEcCCccc-ccc--cHHhhccCCCC--------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 864 LGIIPQSPVL-FSG--TVRFNLDPFSE--------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 864 i~~v~Q~~~l-f~~--tv~~nl~~~~~--------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
||||||++.+ |.. ||+||+.+... ..++. ...+.+.++. .|++...+....+|||||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~------~~~~~~~l~~--~gl~~~~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI------RNEAHQLLKL--VGMSAKAQQYIGYLSTGEKQRV 170 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH------HHHHHHHHHH--TTCGGGTTSBGGGSCHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH------HHHHHHHHHH--cCChhHhcCChhhCCHHHHHHH
Confidence 9999999864 444 99999975321 11111 1112334444 3566666677788999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEE--EEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tv--i~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+|||||+.+|++|||||||++||+.+++.+++.|+++.+ ++|| |+||||++.+.. ||+|++|++|++++.|+++++
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999988754 7899 999999999876 999999999999999999988
Q ss_pred hh
Q 001055 1009 LS 1010 (1171)
Q Consensus 1009 ~~ 1010 (1171)
.+
T Consensus 251 ~~ 252 (279)
T 2ihy_A 251 LT 252 (279)
T ss_dssp CS
T ss_pred hc
Confidence 64
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=407.83 Aligned_cols=221 Identities=22% Similarity=0.361 Sum_probs=185.8
Q ss_pred EEEEeeEEEeCCCCCC--cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHHh
Q 001055 787 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~--~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r 861 (1171)
|+++||+++|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+
T Consensus 4 l~i~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 4 IIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEeEEEEECCE--eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 8999999999653 6 999999999999999999999999999999999999999999999999986521 22346
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++||||||++.+|.. ||++|+.+... ....+.. ..+.+.++. .|++...+....+|||||||||+||||
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~--~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR-----KRVEEVAKI--LDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHH-----HHHHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--cCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 789999999999976 99999975322 2222211 112233333 355555666677899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++..
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 234 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998753 7999999999999876 999999999999999999999876554
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 235 ~~ 236 (353)
T 1oxx_K 235 IQ 236 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=403.13 Aligned_cols=214 Identities=25% Similarity=0.364 Sum_probs=184.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .+++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 3 9999999999999999999999999999999999999999999999999987554 4678999
Q ss_pred EcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|||++.+|.. ||++|+.+.. ...++++.++++.. |++...+....+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 9999997521 11123344444443 444555666678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|++|||||||++||+.+++.+++.|+++. .+.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999999875 37999999999999876 99999999999999999999987665444
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=409.70 Aligned_cols=219 Identities=20% Similarity=0.346 Sum_probs=184.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC------CChHHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 860 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++ .
T Consensus 4 l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 8999999999643 69999999999999999999999999999999999999999999999999865 444 3
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+++||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++.+ |++...+....+|||||||||+|||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID-----QRVREVAELL--GLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHH
Confidence 5789999999999965 9999997531 12222211 1122333332 4555556667789999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
||+.+|++||||||||+||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 7899999999999876 99999999999999999999987655
Q ss_pred ChH
Q 001055 1014 SSF 1016 (1171)
Q Consensus 1014 ~~~ 1016 (1171)
..|
T Consensus 233 ~~~ 235 (372)
T 1g29_1 233 NTF 235 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=384.52 Aligned_cols=207 Identities=22% Similarity=0.318 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++|+
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 4899999999999999999999999999999999999999 99999999998888888899999
Q ss_pred EEcCCcccccc-cHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|+||++.+|.. ||+||+.+... ..++++.++++.. |++...+..+.+||||||||++|||||+.+|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999988865 99999976431 1244455555554 4444455666789999999999999999999
Q ss_pred C-------EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 943 K-------ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 943 ~-------iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+ +|||||||++||+.+++.+.+.|+++. +++|||++|||++.+.. ||++++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999999875 47899999999999866 99999999999999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=385.97 Aligned_cols=212 Identities=25% Similarity=0.350 Sum_probs=172.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHH-hhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 863 (1171)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999965 3699999999999999999999999999999999999 89999999999999988776655 456
Q ss_pred eEEEcCCcccccc-cHHhhccCCC----C--CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCC-CChhHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS----E--HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGEN-FSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~----~--~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~-LSgGqkqrl~l 934 (1171)
++|+||++.+|.. |+++|+.+.. . ....+.. ..+.+.++.+ |++ ...+....+ |||||||||+|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHH
Confidence 9999999998876 9999986421 0 1111111 1123344443 453 344555667 99999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhH
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~e 1007 (1171)
||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|||+||||++.+.. ||+|++|++|++++.|+++.
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999854 7899999999999886 59999999999999999873
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=390.84 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=174.4
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.++++||++.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 459999999864 2699999999999999999999999999999999999999999999997 49
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+|+||++.+|..||++|+. .....+..+.++++..++.+.+..+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999899999997 322334455667777888899999998888888888999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHH-HHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 945 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||||++||+.++..+++.+ ++..+++|||+|||+++.+..||+|++|++|++++.|++++++.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999974 44445899999999999987799999999999999999999875
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=383.31 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=177.8
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++||+++|++. ..++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++... .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 0269999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred E-EEcCCcccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 G-IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~-~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+ |+||++.+ ..|+++|+.++. ...++++.++++ .+ |++ ...+..+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~---------~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLK---------AL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHH---------HT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHH---------Hc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999988 889999997532 222333444444 32 555 5666777899999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cC-EEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CD-RILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d-~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|++|||||||++||+.+++.+++.|+++.+ |+|+||||++.+.. || ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998754 99999999999876 99 9999999999999999998753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-42 Score=380.65 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=179.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHH-hh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~ 862 (1171)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4999999999964 3699999999999999999999999999999999999 57999999999999987776655 44
Q ss_pred heEEEcCCcccccc-cHHhhccCCC----------CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFS----------EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQR 929 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~----------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~-~LSgGqk 929 (1171)
.|+|+||++.+|.. |+.+|+.... .....+.. ..+.+.++. .|+++ ..+.... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIAL--LKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHH--TTCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHH--cCCChhHhcCCcccCCCHHHH
Confidence 69999999998866 8999875310 01111111 123445554 35543 3444444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChh
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~ 1006 (1171)
|||+|||||+.+|+||||||||++||+.+.+.+++.|+++.+ ++|||+||||++.+.. ||+|++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999998754 7899999999999876 8999999999999999998
Q ss_pred HHh
Q 001055 1007 ELL 1009 (1171)
Q Consensus 1007 el~ 1009 (1171)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=398.28 Aligned_cols=214 Identities=23% Similarity=0.365 Sum_probs=192.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+. +++++|+||||+|++||+++|+|||||||||||++|+|+++ ++|.+.. .++.
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46999999999963 24689999999999999999999999999999999999997 7665432 1346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||||||++.+|..||+||+.+......+++.++++.+++.+.++..|..+++.+++.+.+|||||||||+|||||+.+|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998665566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+||||||||+||+..+..+.+.+.+. ..++|+|+||||++.+..||||++|++|+|++.|+++++..+
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999876553 458999999999998888999999999999999999998765
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=383.33 Aligned_cols=208 Identities=25% Similarity=0.416 Sum_probs=174.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 226 (1171)
+.|+++|++|+|+. .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36999999999963 245999999999999999999999999999999999999999876532 13
Q ss_pred CcEEEEecCC--CCCcccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~--~l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..||||||+| .++..||+||+.|+. .... +++.++++.+++.+..+ ....+|||||||||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHH
Confidence 3599999997 467889999998762 1222 34556677777654333 33468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+++.+++.+.+.. .+|+|+|+||||++++.. ||||++|++|+++++|+++++.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999877654 458999999999999875 8999999999999999999987
Q ss_pred hcchHH
Q 001055 376 NNGELF 381 (1171)
Q Consensus 376 ~~~~~~ 381 (1171)
.+....
T Consensus 233 ~~~~~~ 238 (275)
T 3gfo_A 233 AEKEVI 238 (275)
T ss_dssp HHHHHH
T ss_pred cCHHHH
Confidence 764433
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=381.58 Aligned_cols=231 Identities=34% Similarity=0.629 Sum_probs=177.9
Q ss_pred HHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 138 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 138 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
|+.++++.+.+... ........+.|+++|++|.+ +++|+|+||+|++|++++|+||||||||||+++|+|+++|
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp HHHHHHHHCC------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred HHHHHhcccccccc-cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 67777765432111 11111223469999999853 4699999999999999999999999999999999999999
Q ss_pred CCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 218 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 218 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++|.+. +.+.|+|+||++.+|+.||+||+. +......++.+.++.+++.+.++.++.++.+.+++.+.+|||||||||
T Consensus 91 ~~G~I~-~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 91 SEGKIK-HSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp EEEEEE-CCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred CCcEEE-ECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 987654 456799999999998889999998 643344455667778889888888888888889999999999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|+++||||||++||+.++..+++.+++...+|+|+|+||||++++..||++++|++|++++.|+++++..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999999999864433335899999999999988899999999999999999998864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-42 Score=377.15 Aligned_cols=199 Identities=23% Similarity=0.383 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.||
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999722 3699999999999999999999999999999999999999999998 246799
Q ss_pred EEcCCcccc-cccHHhhccCCCC--------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 866 IIPQSPVLF-SGTVRFNLDPFSE--------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 866 ~v~Q~~~lf-~~tv~~nl~~~~~--------~~~---~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
||||++.+| ..||++|+.+... ... +++.++++. .|++...+..+.+|||||||||+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~l~~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY-----------LNLTHLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHH-----------TTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHH-----------cCChHHhcCChhhCCHHHHHHHH
Confidence 999999887 5599999975321 111 123333333 25555556667789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++|||++.+.. ||+|++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999998753 7899999999999866 99999999999 99999998863
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=392.19 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=175.2
Q ss_pred CCCcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------
Q 001055 159 GLPAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------- 224 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------- 224 (1171)
..+.|+++|++++|+.+. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|.+..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 345799999999997422 246999999999999999999999999999999999999999886532
Q ss_pred --ecCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 --IRGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|||+||++.++ ..||+|||.++. .... +++.++++.+++.+..+.. ..+||||||
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqk 169 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQK 169 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-----------TTTSCHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHH
Confidence 245699999999887 579999998752 1222 3455667777776544433 358999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||+|||||+.+|++||||||||+||+.+++.+++.+.+..+ .|.|+|+||||++++.. ||||++|++|+++++|+++
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999998777644 48999999999999865 8999999999999999999
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++..+
T Consensus 250 ev~~~ 254 (366)
T 3tui_C 250 EVFSH 254 (366)
T ss_dssp HHHSS
T ss_pred HHHhC
Confidence 98765
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-42 Score=374.99 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=164.5
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------------
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------------- 225 (1171)
|+++|++|+|+.+. .+++|+||||++++||+++|+||||||||||+++|+|+++|++|.+...
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997422 2469999999999999999999999999999999999999998865321
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC------CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 226 RGTVAYVPQVSWIFN-ATVRDNILFGS------AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~------~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+..|||++|+|.++. .||+||+.++. .... +++.+.++.+++.+.. .+....+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 124999999999875 69999998741 1222 2233445555543321 1334578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|||+|||||+.+|++|||||||++||+.+++.+++.+.+...+ |+|+|+||||++....||||++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9999999999999999999999999999999999987766544 899999999999777799999999999999887765
Q ss_pred H
Q 001055 374 L 374 (1171)
Q Consensus 374 l 374 (1171)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=385.44 Aligned_cols=203 Identities=28% Similarity=0.455 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 227 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 227 (1171)
.|+++|++++|+ ++++|+||||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999996 357999999999999999999999999999999999999999876532 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC----C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF----E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~----~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.||||+|++.+| ..||+|||.|+... . .+++.++++.+++.+..+..| .+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 699999999987 57999999997431 1 235566777777765444433 5899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|++||||||||+||+..+..+.+.+.+.. ..|.|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776643 45899999999999876 4899999999999999999998765
Q ss_pred c
Q 001055 378 G 378 (1171)
Q Consensus 378 ~ 378 (1171)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=370.37 Aligned_cols=202 Identities=28% Similarity=0.395 Sum_probs=170.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 227 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 227 (1171)
.|+++|++|+|+ ++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 357999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCC----CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
.||||||++.++ ..||+||+.++. ... .+++.++++..++.+..+ ....+|||||||||+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 599999999887 469999998742 122 133455666666654332 334689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .||++++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999987776556899999999999987 4899999999999999999988654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=365.46 Aligned_cols=203 Identities=23% Similarity=0.367 Sum_probs=167.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++|+|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 5 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred ceEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 36999999999963 57999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCC-C-CCH----HHHHHHHHHcC-chHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGS-A-FEP----ARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~-~-~~~----~~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.|||+||++.++. .||+||+.++. . ... +++.++++..+ +.+ ..+....+|||||||||+|
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHH
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHH
Confidence 4999999998875 59999999863 1 111 12233333331 221 2344567999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .|||+++|++|++++.|+++++.+.
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999999987766556899999999998875 5899999999999999999887654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=370.31 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=171.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.|+++|++++|+ ++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 599999999995 257999999999999999999999999999999999999999876522
Q ss_pred --------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCC----HHHHHHHHHHcCchHH-HhcCCCCCccccCCCC
Q 001055 225 --------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHD-LDLLPGGDVTEIGERG 286 (1171)
Q Consensus 225 --------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~~~g 286 (1171)
.+..||||||++.++ ..||+||+.++. ... .+++.++++..++.+. .+.. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 123599999999887 469999998742 122 2345566777777665 4433 3
Q ss_pred CccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEE
Q 001055 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 365 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i 365 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .||||++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999999999999999999999999999999999999987766556899999999999986 5899999999999
Q ss_pred EEecChhHHhhc
Q 001055 366 KEEGTFEDLSNN 377 (1171)
Q Consensus 366 ~~~g~~~~l~~~ 377 (1171)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999988654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=386.87 Aligned_cols=202 Identities=30% Similarity=0.414 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++|+|+ +.++|+||||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 357999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+. ..+. +++.++++..++.+..+.. ..+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC-----------GGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhHCCHHHHHHHHHHHHH
Confidence 99999987 579999999862 1222 3456667777776544433 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++|||||||++||+..+..+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999988776544 899999999999876 4899999999999999999998765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=365.84 Aligned_cols=195 Identities=23% Similarity=0.335 Sum_probs=163.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----e------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I------------ 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~------------ 225 (1171)
.|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 5899999999963 57999999999999999999999999999999999999999876532 0
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..|+|+||++.++ ..||+||+.++. ... .+++.++++..++.+. ......+|||||||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK-----------LSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-----------TTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 14599999999887 579999998752 111 1234445555554332 2334468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
+|||||+.+|+++||||||++||+.+++.+++.+.+...+|+|+|+||||++++..||++++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999987776556899999999999887789999999999998875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=367.85 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCC--CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~--~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~ 230 (1171)
.|+++|++|+|+.+.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 4899999999962111 46999999999999999999999999999999999999999886533 234699
Q ss_pred EEecCC--CCCcccHHHHHhcCCC------CCHHHHHHHHHHcCch--HHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 231 YVPQVS--WIFNATVRDNILFGSA------FEPARYEKAIDVTSLQ--HDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 231 ~v~Q~~--~l~~~Tv~eni~~g~~------~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
|++|+| .++..||+||+.++.. ...+++.++++..++. +..+..+ .+|||||||||+||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHHHH
Confidence 999996 4568899999998632 1135667788888886 5544433 58999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999877665458999999999999875 899999999999999998887643
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=366.64 Aligned_cols=201 Identities=26% Similarity=0.369 Sum_probs=171.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCC-c
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-N 240 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~ 240 (1171)
.|+++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+..|||+||++.++ .
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-VYQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-EeccEEEEcCCCccCCC
Confidence 5899999999962 35799999999999999999999999999999999999999988776 566799999999886 7
Q ss_pred ccHHHHHhcCCC--------CCH---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 241 ATVRDNILFGSA--------FEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 241 ~Tv~eni~~g~~--------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
.||+||+.++.. ... +++.++++..++.+..+ ....+|||||||||+|||||+.+|++
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 899999998631 111 34555666666654332 33468999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||||++||+.+++.+++.+.+...+ |+|+|++|||++++. .||++++|++|+ ++.|+++++.+.
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999987766555 899999999999985 589999999999 999999887643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=369.79 Aligned_cols=199 Identities=20% Similarity=0.357 Sum_probs=167.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++|+|++ +++|+||||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 6 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 6 EILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred cEEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 57999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC----------------C-H---HHHHHHHHHcCchHHHhcCCCCCccccCCCC
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF----------------E-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~----------------~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g 286 (1171)
.|||+||++.++ ..||+||+.++... . . +++.++++..++.+. .+...
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~ 151 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKA 151 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBG
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCc
Confidence 599999999887 57999999886311 1 1 233444555554332 23445
Q ss_pred CccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEE
Q 001055 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 365 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i 365 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .|||+++|++|++
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 689999999999999999999999999999999999999999987776556899999999999986 5899999999999
Q ss_pred EEecChhH
Q 001055 366 KEEGTFED 373 (1171)
Q Consensus 366 ~~~g~~~~ 373 (1171)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=366.44 Aligned_cols=203 Identities=25% Similarity=0.403 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCc
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGT 228 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~ 228 (1171)
.+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.
T Consensus 13 ~~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred CCeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence 34699999999995 357999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
|||+||++.++ ..||+||+.++. .... +++.++++..++.+..+ ....+|||||||||+||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 99999999887 459999998742 1122 34455666666654433 23468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|++|||++++.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999877765568999999999999876 89999999999999999888753
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=369.65 Aligned_cols=203 Identities=24% Similarity=0.336 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|+++.|+ ++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 4699999999996 357999999999999999999999999999999999999999886542 1234
Q ss_pred EEEEecCCCC-CcccHHHHHhcCCC-----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 229 VAYVPQVSWI-FNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 229 i~~v~Q~~~l-~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
++|++|++.+ +..||+||+.++.. ...++..++++.+++.+..+ ....+|||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999987 57899999998632 12345566677666543222 2346899999999999999
Q ss_pred hcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 303 VYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 303 L~~------~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+. +|++|||||||++||+.++..+++.+.+...+ ++|+|+||||++++. .||||++|++|+++++|+++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999 99999999999999999999999987766444 579999999999987 5899999999999999999998
Q ss_pred hhc
Q 001055 375 SNN 377 (1171)
Q Consensus 375 ~~~ 377 (1171)
.+.
T Consensus 236 ~~~ 238 (266)
T 4g1u_C 236 LNA 238 (266)
T ss_dssp CCH
T ss_pred hCc
Confidence 754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=361.23 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=163.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..|+.|+
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999964 6999999999999999999999999999999999999999999999999985 3678899
Q ss_pred EEcCCcccccc-cHHhhccCCC-----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~-----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
||||++.+|.. ||++|+.++. ...++++.++++.. |++.. ++.+.+|||||||||+|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999998876 9999996421 11233344444432 45555 6667789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
.+|++|||||||++||+.+...+++.|+++. .++|||++||+++.+.. ||+|+ +.+|+|
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999999999875 37899999999999988 77766 445555
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=380.27 Aligned_cols=207 Identities=28% Similarity=0.427 Sum_probs=174.8
Q ss_pred CCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCc
Q 001055 159 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGT 228 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~ 228 (1171)
+.+.|+++|++++|+. ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++.
T Consensus 11 ~~~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 3457999999999931 357999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
||||+|++.+| ..||+|||.|+. ... .+++.++++..++.+..+..| .+|||||||||+||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 99999999887 579999999862 122 234566677777765444333 58999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
|||+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++.. ||||++|++|++++.|+++++.++.
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999987765443 8999999999998764 8999999999999999999987653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=378.52 Aligned_cols=203 Identities=27% Similarity=0.342 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 489999999995 356999999999999999999999999999999999999999886532 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+... . .+++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999887 57999999987421 1 235666777777765544433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++.++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999987765443 899999999999875 58999999999999999999987653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=377.47 Aligned_cols=203 Identities=26% Similarity=0.365 Sum_probs=173.0
Q ss_pred cEEEEeeEEEcCCCCCCC--ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~--~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+. ++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|.+..
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999963 56 999999999999999999999999999999999999999876421
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
.++.||||+|++.+| ..||+|||.|+... . .+++.++++..++.+..+..+ .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 134699999999987 56999999987421 2 234566677777765444333 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|++|||||||++||+..++.+.+.+.+..+ .|+|+|+||||++++. .||||++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999998776544 3899999999999876 4899999999999999999998
Q ss_pred hhcc
Q 001055 375 SNNG 378 (1171)
Q Consensus 375 ~~~~ 378 (1171)
.++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=378.29 Aligned_cols=202 Identities=29% Similarity=0.379 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999876532 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+. .... +++.++++..++.+..+. ...+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999987 579999999862 1222 345556666666543333 3368999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++.++
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999987765443 899999999999875 5899999999999999999998754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=377.60 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 599999999996 256999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC---CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+... .. +++.++++..++.+..+..+ .+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999887 57999999997431 22 34566677777765544433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999987766444 899999999999875 5899999999999999999998765
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=358.60 Aligned_cols=198 Identities=23% Similarity=0.354 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+. +|+|+||++++ |+++|+||||||||||+++|+|+++|++|.+.. .+..|||+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 689999999952 59999999999 999999999999999999999999999876532 13469999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC-C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 233 PQVSWIFN-ATVRDNILFGSAF-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 233 ~Q~~~l~~-~Tv~eni~~g~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||++.++. .||+||+.++... . .+++.++++..++.+.. .....+|||||||||+|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998874 5999999987432 1 12344455555543322 233468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+++||||||++||+.+++.+++.+.+... .|+|+|++|||++++. .||++++|++|++++.|+++++.+.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999998776544 3899999999999875 5899999999999999999887643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=375.40 Aligned_cols=201 Identities=28% Similarity=0.397 Sum_probs=171.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+ ++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 24 999999999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCC-cccHHHHHhcCCC----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 233 PQVSWIF-NATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+|++.+| ..||+|||.|+.. ...+++.++++..++.+..+.. ..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHcCC
Confidence 9999988 4699999998621 1225566677777765443333 3589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
++||||||||+||+..++.+.+.+.+..+ .|.|+|+||||++++. .||||++|++|++++.|+++++.++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999998876643 4899999999999875 58999999999999999999987653
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=367.96 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 226 (1171)
+.|+++|++|+|+. +++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 46999999999963 57999999999999999999999999999999999999999876532 13
Q ss_pred CcEEEEecCCCC-Cc--ccHHHHHhcCCC--------CCH---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 227 GTVAYVPQVSWI-FN--ATVRDNILFGSA--------FEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 227 ~~i~~v~Q~~~l-~~--~Tv~eni~~g~~--------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
..|||++|++.+ +. .||+||+.++.. ... +++.++++..++.+.. +....+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHH
Confidence 469999999864 44 499999998631 111 2344555666654332 2344689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEE--EEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR--VLVTNQLHFLS-QVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tv--i~vtH~~~~l~-~~d~i~~l~~G~i~~~g 369 (1171)
|||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+ |+||||++++. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999877664458999 99999999985 58999999999999999
Q ss_pred ChhHHhhc
Q 001055 370 TFEDLSNN 377 (1171)
Q Consensus 370 ~~~~l~~~ 377 (1171)
+++++.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99887643
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=376.33 Aligned_cols=202 Identities=24% Similarity=0.383 Sum_probs=171.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 489999999995 257999999999999999999999999999999999999999876422 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++.||||+|++.+| ..||+|||.|+. .... +++.++++..++.+..+.. ..+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-----------cccCCHHHHHHH
Confidence 24599999999887 579999999862 1222 3455667777776544433 358999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999987765443 899999999999876 58999999999999999999887
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
.+
T Consensus 229 ~~ 230 (372)
T 1g29_1 229 DK 230 (372)
T ss_dssp HS
T ss_pred hC
Confidence 54
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=352.77 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++|+ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |.+.. .+..|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 5899999987 4899999999999999999999999999999999999999 86532 12359
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCC--CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||+||++.++ ..||+||+.++... +.+++.++++..++.+..+ ....+|||||||||+|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999887 56999999987421 3556677777777754332 33468999999999999999999
Q ss_pred CC-------EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 307 SD-------VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 307 ~~-------vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+ +|||||||++||+.+++.+++.+.+...+|+|+|++|||++++. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 99999999999999999999987776556899999999999985 589999999999999999988865
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=350.21 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=157.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCccce-------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAV-------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~--~~~~~g~~~~-------------~~ 226 (1171)
.|+++|++|+|+. +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|.+.. .+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 5899999999963 5799999999999999999999999999999999998 7888876532 12
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCC----C--CC----HHHHHHHHHHcCch-HHHhcCCCCCccccCCCCCc-cChHH
Q 001055 227 GTVAYVPQVSWIF-NATVRDNILFGS----A--FE----PARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVN-ISGGQ 293 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~-~~Tv~eni~~g~----~--~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~-LSGGq 293 (1171)
..++|++|+|.+| ..||+||+.++. . .. .+++.++++..++. +..+ ....+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-----------RYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-----------SBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-----------CCcccCCCHHH
Confidence 3489999999887 469999997642 1 11 12334455555552 2222 22346 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh--cCEEEEEeCCEEEEecCh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~--~d~i~~l~~G~i~~~g~~ 371 (1171)
||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999877765568999999999999886 499999999999999988
Q ss_pred h
Q 001055 372 E 372 (1171)
Q Consensus 372 ~ 372 (1171)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=352.15 Aligned_cols=197 Identities=23% Similarity=0.306 Sum_probs=165.8
Q ss_pred EEEEeeEEEcCCC-CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee---------cCcEE-E
Q 001055 163 ISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVA-Y 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~-~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------~~~i~-~ 231 (1171)
|+++|++++|+.. ..+++|+|+||+++ |++++|+||||||||||+++|+|++ |++|.+... +..|+ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 7899999999631 01579999999999 9999999999999999999999999 998765321 34699 9
Q ss_pred EecCCCCCcccHHHHHhcCC---CCCHHHHHHHHHHcCch-HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 232 VPQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+||++.+ ..||+||+.++. ....+++.+.++..++. +. .+....+|||||||||+|||||+.+|
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998 899999998752 23345666677766654 33 23445689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcC-EEEEEeCCEEEEecChhHHhh
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVD-RIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d-~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+++||||||++||+.+++++++.+.+.. + |+|+||||++++. .|| ++++|++|++++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~-~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYG-K--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSC-S--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhc-C--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999776543 2 9999999999986 589 999999999999999988754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=353.18 Aligned_cols=203 Identities=19% Similarity=0.245 Sum_probs=161.5
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCcccee------------
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAVI------------ 225 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~--~~~~~g~~~~~------------ 225 (1171)
.+.|+++|++|+|+ ++++|+||||+|++||+++|+||||||||||+++|+|+ ++|++|.+...
T Consensus 18 ~~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp --CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred CceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 34699999999995 35799999999999999999999999999999999999 46777754321
Q ss_pred -cCcEEEEecCCCCC-cccHHHHHhcCC---------C-CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCC-c
Q 001055 226 -RGTVAYVPQVSWIF-NATVRDNILFGS---------A-FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 288 (1171)
Q Consensus 226 -~~~i~~v~Q~~~l~-~~Tv~eni~~g~---------~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~-~ 288 (1171)
+..|+|++|++.++ ..||.||+.++. + .+. +++.++++..++... ....... +
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~ 164 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVG 164 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTT
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccC
Confidence 12399999999887 569999986531 0 111 123334444443210 1122233 5
Q ss_pred cChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh--cCEEEEEeCCEEE
Q 001055 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVK 366 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~--~d~i~~l~~G~i~ 366 (1171)
|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++.. |||+++|++|+++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999877665568999999999999875 7999999999999
Q ss_pred EecChhHHh
Q 001055 367 EEGTFEDLS 375 (1171)
Q Consensus 367 ~~g~~~~l~ 375 (1171)
+.|+++++.
T Consensus 245 ~~g~~~~~~ 253 (267)
T 2zu0_C 245 KSGDFTLVK 253 (267)
T ss_dssp EEECTTHHH
T ss_pred EEcCHHHHh
Confidence 999987653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=338.40 Aligned_cols=187 Identities=18% Similarity=0.317 Sum_probs=153.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 234 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 234 (1171)
.|+++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..|+|+||
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 699999999995 2 6999999999999999999999999999999999999999886543 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCC-----CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 235 VSWIFN-ATVRDNILFGS-----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 235 ~~~l~~-~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
++.++. .||+||+.++. ..+.+++.++++..++... +..+.+|||||||||+|||||+.+|+
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL~~~p~ 153 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAE 153 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 998875 59999998752 1224455566666554321 33457899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
++||||||++||+.+++.+++.+.+...+|+|+|++|||++++.. +|+++ +.+|+|
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 154 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 999999999999999999999877655458999999999999876 46665 445543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=369.00 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=122.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++++++.|++- ..+| +..+++|++++|+|+||||||||++.++|...|. |+ +.+.+
T Consensus 258 ~~~~~l~~g~~~l-d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~ 315 (525)
T 1tf7_A 258 SSNVRVSSGVVRL-DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILF 315 (525)
T ss_dssp CCCCEECCSCHHH-HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEE
T ss_pred cccceeecChHHH-HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEE
Confidence 4556777666320 1233 4499999999999999999999999999999885 53 01345
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
++|++. ..+..+...+. .. + .++.. .|+..........|||||+||+++||++..+|++||
T Consensus 316 ~~ee~~---~~l~~~~~~~g-~~---~---------~~~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~lli 376 (525)
T 1tf7_A 316 AYEESR---AQLLRNAYSWG-MD---F---------EEMER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIA 376 (525)
T ss_dssp ESSSCH---HHHHHHHHTTS-CC---H---------HHHHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEeCCH---HHHHHHHHHcC-CC---H---------HHHHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 555542 12333221111 11 1 11111 233333344456799999999999999999999999
Q ss_pred EecCCcCCCHH-----HHHHHHHHHHHHc-CCcEEEEEecCh----------hhhhh-cCEEEEEeCcE
Q 001055 947 LDEATAAVDVR-----TDALIQKTIREEF-KSCTMLIIAHRL----------NTIID-CDRILLLDSGR 998 (1171)
Q Consensus 947 LDEpTs~LD~~-----t~~~i~~~l~~~~-~~~tvi~vtH~~----------~~~~~-~d~i~vl~~G~ 998 (1171)
+| ||++||.. ..+.+.+.++.+. .+.|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 377 lD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 377 ID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred Ec-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99 99999999 8888888887764 479999999999 66766 99999999887
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=340.56 Aligned_cols=201 Identities=21% Similarity=0.229 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI- 238 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l- 238 (1171)
.+.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. +..|||+||++.+
T Consensus 355 ~~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAE 429 (607)
T ss_dssp CEEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-CCCEEEECSSCCCC
T ss_pred ceEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-eeEEEEEecCccCC
Confidence 346999999999953 4799999999999999999999999999999999999999987764 5679999999876
Q ss_pred CcccHHHHHhcC-CC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc
Q 001055 239 FNATVRDNILFG-SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315 (1171)
Q Consensus 239 ~~~Tv~eni~~g-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp 315 (1171)
+..||.|++... .. .+.+...++++..++.+. ......+|||||||||+|||||+.+|++||||||
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 578999998753 10 012233344444443221 2334568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001055 316 LSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSN 376 (1171)
Q Consensus 316 ts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~ 376 (1171)
|+|||+.++..+++.+.+.. ..|+|+|+||||++++.. ||||++|++ |.+...|+++++..
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999776654 358999999999999875 899999986 78888899887754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-33 Score=338.34 Aligned_cols=201 Identities=20% Similarity=0.227 Sum_probs=163.3
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI- 238 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l- 238 (1171)
.+.++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|.+.. ...|||+||++..
T Consensus 285 ~~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-DLTVAYKPQYIKAD 359 (538)
T ss_dssp CEEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-CCCEEEECSSCCCC
T ss_pred CeEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CceEEEEecCCcCC
Confidence 346999999999952 4799999999999999999999999999999999999999988764 5579999999876
Q ss_pred CcccHHHHHhcC-CC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc
Q 001055 239 FNATVRDNILFG-SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315 (1171)
Q Consensus 239 ~~~Tv~eni~~g-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp 315 (1171)
+..||.|++... .. .+.+...++++..++.+ .......+|||||||||+|||||+.+|++||||||
T Consensus 360 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEP 428 (538)
T 1yqt_A 360 YEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEP 428 (538)
T ss_dssp CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 578999988642 00 11222223333333321 23344578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001055 316 LSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSN 376 (1171)
Q Consensus 316 ts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~ 376 (1171)
|+|||+.++..+++.+.+.. ..|+|+|+||||++++.. ||||++|++ |++...|+++++..
T Consensus 429 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999776654 348999999999999875 899999986 78888899887754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-32 Score=333.04 Aligned_cols=200 Identities=19% Similarity=0.248 Sum_probs=162.6
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI- 238 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l- 238 (1171)
.+.++++|+++.|+. ..|+++||+|++||++||+||||||||||+++|+|+++|++|.+...+..++|+||++..
T Consensus 267 ~~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~ 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342 (538)
T ss_dssp CEEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCC
T ss_pred cceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccc
Confidence 346899999999963 468889999999999999999999999999999999999999887766789999999765
Q ss_pred CcccHHHHHhcCCC----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeC
Q 001055 239 FNATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 314 (1171)
+..||++|+.+... .......++++..++.+. .+....+|||||||||+|||||+.+|+||||||
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE 411 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQ 411 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 57899999976321 112233344444444322 234457899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHH
Q 001055 315 PLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDL 374 (1171)
Q Consensus 315 pts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l 374 (1171)
||+|||+.++..+++.+.+... .|+|+|+||||++++.. ||||++|++ |.+...+++.++
T Consensus 412 PT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 412 PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999998776543 58999999999999875 899999986 455556665544
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-31 Score=334.40 Aligned_cols=196 Identities=20% Similarity=0.262 Sum_probs=159.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+...|++++|++. ++|+|+||+|++||++||+||||||||||+++|+| |+| +|.+... +.+++
T Consensus 435 ~L~~~~ls~~yg~~--~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred eeEEeeEEEEECCE--EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 58888999999753 69999999999999999999999999999999995 554 4544311 12478
Q ss_pred EEcCCc-ccc-cccHHhhccCC-CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSP-VLF-SGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~-~lf-~~tv~~nl~~~-~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|++|++ .++ ..|+.+|+... ... ++++.+.++..++. +...+....+||||||||++|||||+.+|
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~----------~~~~~~~~~~LSGGqkQRvaLArAL~~~P 567 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT----------DEMIAMPISALSGGWKMKLALARAVLRNA 567 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC----------HHHHHSBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC----------hhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999986 444 45999998641 111 45566666665542 12233445679999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHhh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 1010 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~ 1010 (1171)
+||||||||++||+.+.+.+.+.|++ .++|+|+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 568 ~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 568 DILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999998 68999999999999987 9999999999997 5799999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-32 Score=329.93 Aligned_cols=198 Identities=23% Similarity=0.297 Sum_probs=162.0
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCC-----CEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-C
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVG-----SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 239 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~G-----e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 239 (1171)
++++|+|+. .+.+++++||++++| |+++|+||||||||||+++|+|+++|++|... .+..++|+||+... +
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccC
Confidence 667888863 235789999999999 88999999999999999999999999988642 34469999999765 6
Q ss_pred cccHHHHHhcCC---CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 240 NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 240 ~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
..||++|+.... ..+.....++++..++.+. ......+|||||||||+|||||+.+|+||||||||
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 789999986421 1233444455555554332 23345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 001055 317 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSNN 377 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 377 (1171)
+|||+.++..+++.+.+.. ..|+|+|+||||++++.. ||||++|++ |+++..|+++++++.
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999998776653 358999999999999875 899999996 899999999988764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.9e-32 Score=338.35 Aligned_cols=203 Identities=23% Similarity=0.351 Sum_probs=138.9
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHH---------------------HHHhcCCCCC-------CceEEECCEecC
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------------------NTLFRIVELE-------RGRILIDGFDIA 853 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl---------------------~~l~g~~~p~-------~G~I~i~g~~i~ 853 (1171)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.++.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 699999999999999999999999999998 8999999998 455666665543
Q ss_pred CCChHHHhhheEEEcCCcccc--------------------cccHHhhccCCCCC--C--HHHH-----HHHHHHhcHHH
Q 001055 854 KFGLMDLRKILGIIPQSPVLF--------------------SGTVRFNLDPFSEH--S--DADL-----WEALERAHLKD 904 (1171)
Q Consensus 854 ~~~~~~~r~~i~~v~Q~~~lf--------------------~~tv~~nl~~~~~~--~--~~~i-----~~~l~~~~~~~ 904 (1171)
.. .++.+++|+|.+.++ ..|+++|+.++... . +.+. .+.++.. +
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 184 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---G 184 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---H
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---H
Confidence 22 244566666654322 34889998754211 1 0111 1111111 2
Q ss_pred HHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEec
Q 001055 905 AIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH 980 (1171)
Q Consensus 905 ~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH 980 (1171)
.++. .|++.. .+....+|||||||||+|||||+.+|+ ||||||||++||+.+...+++.|+++. .++|||+|||
T Consensus 185 ~l~~--~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 185 FLQN--VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HHHH--TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHH--cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 2333 244332 355667899999999999999999998 999999999999999999999999875 4799999999
Q ss_pred ChhhhhhcCEEEEE------eCcEEEEecChhHHhhcCC
Q 001055 981 RLNTIIDCDRILLL------DSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 981 ~~~~~~~~d~i~vl------~~G~i~~~g~~~el~~~~~ 1013 (1171)
|++.+..||+|++| ++|++++.|+++++.+.+.
T Consensus 263 d~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 99988889999999 8999999999999987654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-33 Score=311.77 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCC-CccEEEEeeEEEeCCCCCCcceeeeEEEcCCC
Q 001055 737 LLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSD 815 (1171)
Q Consensus 737 ~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~-~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge 815 (1171)
++..+......+.....+.+|+.++++.+.+... . ...|+. .+.|+++||+|+|+ .++|+++||+|++|+
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~---~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---G---EGSWKSILTFFNYQNIELITF---INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---S---SCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---C---CCcccccCCeEEEEEEEEEcC---hhhhccceEEecCCC
Confidence 3444444555566677888888888765432110 0 011221 23589999999996 369999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHh-hccCCCCCCHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLW 894 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~-nl~~~~~~~~~~i~ 894 (1171)
++||+||||||||||+++|+|++ +|+| +++++|++.+|.+|+++ |+.+....++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~---- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH---- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH----
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH----
Confidence 99999999999999999999999 8988 35789999999999997 8876533332
Q ss_pred HHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCc
Q 001055 895 EALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 973 (1171)
Q Consensus 895 ~~l~~~~~~~~i~~-lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~ 973 (1171)
+++++++. +|.|++ +.+|||||||| ||||+++|+||| ||+||+.+++.+..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 34567777 788876 67899999999 999999999999 99999999988862
Q ss_pred EEEEEecChhhhhhcCEEEEEeCcEEEEecChhHH
Q 001055 974 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 974 tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+|||++.+..||+| +|++|+|++.|+++++
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 29999998889999 9999999999999999
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-33 Score=312.51 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=180.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCC
Q 001055 98 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAE 177 (1171)
Q Consensus 98 ~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 177 (1171)
+..+-+.+.+++.+..+ ..|+..+...+..+..+.++..||.+++..+++...+..........|+++|++|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH----
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC----
Confidence 34455677777777666 4799999999999999999999999999875432211111000012488999999996
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHH-HHhcCCCCCHH
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD-NILFGSAFEPA 256 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~e-ni~~g~~~~~~ 256 (1171)
+++|+++||+|++|++++|+||||||||||+++|+|++ +|.+ ++|++|++++|.+|+++ ||.++...++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------~~~v~q~~~lf~~ti~~~ni~~~~~~~~- 182 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------LSFANHKSHFWLASLADTRAALVDDATH- 182 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------ECGGGTTSGGGGGGGTTCSCEEEEEECH-
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------EEEecCccccccccHHHHhhccCccccH-
Confidence 46999999999999999999999999999999999998 4544 57889999999999998 9998743332
Q ss_pred HHHHHHHHcCchHHHhc-CCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc
Q 001055 257 RYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~-~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~ 335 (1171)
.. .+.++. ++.+.+ |.+|||||||| ||||+++|+||| ||+||+.+++.+..
T Consensus 183 ~~---------~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------ 234 (305)
T 2v9p_A 183 AC---------WRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------ 234 (305)
T ss_dssp HH---------HHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG------
T ss_pred HH---------HHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH------
Confidence 12 223333 554432 67999999999 999999999999 99999998877641
Q ss_pred cCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 336 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 336 ~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+||++..+..+|+| +|++|++++.|+++++ .+.|..++
T Consensus 235 --------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~ 272 (305)
T 2v9p_A 235 --------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLW 272 (305)
T ss_dssp --------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHST
T ss_pred --------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHH
Confidence 29999999899999 9999999999999998 45555554
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=286.54 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=147.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCCc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--------------------------------------LERG 843 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--------------------------------------p~~G 843 (1171)
.++++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999976663 4578
Q ss_pred eEEECCEecCCCChHHHhhh-eEEEcCCcccccccHHhhccCCCCCCH---HH---------------------------
Q 001055 844 RILIDGFDIAKFGLMDLRKI-LGIIPQSPVLFSGTVRFNLDPFSEHSD---AD--------------------------- 892 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~~nl~~~~~~~~---~~--------------------------- 892 (1171)
++++||.+++..+..++... +++++|++.++-.+..++..+...... ..
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999976666666666 899999987765544332221111100 00
Q ss_pred -----------HHHHHHH-----------------hcHHHHHHHccC------------------Ccch---hhhcCCCC
Q 001055 893 -----------LWEALER-----------------AHLKDAIRRNSL------------------GLDA---QVSEAGEN 923 (1171)
Q Consensus 893 -----------i~~~l~~-----------------~~~~~~i~~lp~------------------gl~~---~~~~~~~~ 923 (1171)
..+.+.. ..+.+.+..+.. |++. .+...+..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0000000 011122222211 1111 12222222
Q ss_pred --------CChhHHHHHHHHHHhccCC--CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEE
Q 001055 924 --------FSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 924 --------LSgGqkqrl~lArall~~p--~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
|||||||||+|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 7999999999999999999 999999999999999999999999998778999999999998877999999
Q ss_pred E----eCcEEEEe
Q 001055 994 L----DSGRVLEY 1002 (1171)
Q Consensus 994 l----~~G~i~~~ 1002 (1171)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998765
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-31 Score=312.73 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=153.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-e-EEECCEecCCCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-R-ILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~-I~i~g~~i~~~~~~~~r~~ 863 (1171)
.++++||+++|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 478888888884 79999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred eEEEcCCccccc----ccHHhhccCCCCC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 864 LGIIPQSPVLFS----GTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~----~tv~~nl~~~~~~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
++++||++.+|. .|+++|+ +.... .++.+.+ .++. .|++...+ ..+|||||||||+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~---------ll~~--~gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQP---------MVKN--FGLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCC---------EECC--CCSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHH---------HHHH--hCCCcccc--hhhhhHHHHHHHHH
Confidence 999999986542 3899888 43221 0011111 1111 35554443 56899999999999
Q ss_pred HHH--hccCCCE----EEEec-CCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChh------hhhh-cCE-----EEEEe
Q 001055 935 SRA--LLRRSKI----LVLDE-ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN------TIID-CDR-----ILLLD 995 (1171)
Q Consensus 935 Ara--ll~~p~i----LlLDE-pTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~------~~~~-~d~-----i~vl~ 995 (1171)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++ .+.|+|+|+|+.+ ++.. ||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 7777777776 3789999999987 5555 999 99999
Q ss_pred -CcEEEEecChhHHh
Q 001055 996 -SGRVLEYDTPEELL 1009 (1171)
Q Consensus 996 -~G~i~~~g~~~el~ 1009 (1171)
+|+|+ .|+++++.
T Consensus 324 k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 324 KLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCTTCC-CCCHHHHH
T ss_pred CCCcEE-ECCHHHHh
Confidence 99999 99998874
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=297.65 Aligned_cols=132 Identities=22% Similarity=0.369 Sum_probs=104.5
Q ss_pred ccHHHHHhcCCCCC-HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC---CEEEEeCcC
Q 001055 241 ATVRDNILFGSAFE-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPL 316 (1171)
Q Consensus 241 ~Tv~eni~~g~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~---~vllLDEpt 316 (1171)
.||.|++.|..... ..+..+.++..++.. ..+|..+.+|||||||||+|||||+++| +||||||||
T Consensus 767 ~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 36666666543221 122334444444422 2356778899999999999999999875 699999999
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE------eCCEEEEecChhHHhhcchHHH
Q 001055 317 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV------HEGMVKEEGTFEDLSNNGELFQ 382 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~ 382 (1171)
+|||+.+++.+.+.+.+...+|+|+|+||||++++..||+|++| ++|+|+++|+++++.++...|.
T Consensus 837 sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 99999999999998777666799999999999999999999999 8999999999999987755443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-26 Score=289.30 Aligned_cols=96 Identities=19% Similarity=0.416 Sum_probs=87.9
Q ss_pred cCCCCCccChHHHHHHHHHHHhccC---CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 282 IGERGVNISGGQKQRVSMARAVYSN---SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LAraL~~~---~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
++....+|||||||||+|||+|+.+ |+||||||||+|||+...+.+++.+.+....|.|||+||||++++..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4666789999999999999999996 7999999999999999999999987776667999999999999998799999
Q ss_pred EE------eCCEEEEecChhHHhhc
Q 001055 359 LV------HEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 359 ~l------~~G~i~~~g~~~~l~~~ 377 (1171)
+| ++|+|+++|+++++.+.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhC
Confidence 99 69999999999998765
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=286.85 Aligned_cols=98 Identities=27% Similarity=0.430 Sum_probs=88.6
Q ss_pred cCCCCCccChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 282 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LAraL~~~~---~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
.+....+|||||||||+|||+|+.+| +||||||||+|||+...+.+++.+.+....|.|+|+||||++++..||||+
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 45667899999999999999999875 999999999999999999999988776667999999999999998899999
Q ss_pred EE------eCCEEEEecChhHHhhcch
Q 001055 359 LV------HEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 359 ~l------~~G~i~~~g~~~~l~~~~~ 379 (1171)
+| ++|++++.|+++++.+...
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred EEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 99 6899999999999976543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-28 Score=293.06 Aligned_cols=188 Identities=16% Similarity=0.078 Sum_probs=141.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC-c-cce---ecCcEEEEecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-A-SAV---IRGTVAYVPQV 235 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g-~-~~~---~~~~i~~v~Q~ 235 (1171)
+.++++|++|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| . +.. .+..++|+||+
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 3567777777773 69999999999999999999999999999999999988 6 432 24469999999
Q ss_pred CCCC----cccHHHHHhcCCCC--C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH--hc
Q 001055 236 SWIF----NATVRDNILFGSAF--E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA--VY 304 (1171)
Q Consensus 236 ~~l~----~~Tv~eni~~g~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra--L~ 304 (1171)
+.++ ..||+||+ |+... . .++...+++..++. ... + ..+|||||||||+|||| |+
T Consensus 188 ~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-----------~~~-~-~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 188 ISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-----------RIN-E-NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp CEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-----------SGG-G-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-----------ccc-c-hhhhhHHHHHHHHHHHHHHhc
Confidence 8542 35999999 75321 0 00111111111111 111 2 56899999999999999 99
Q ss_pred cCCCE----EEEeC-cCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcc------hhh-hcCE-----EEEEe-CCEEE
Q 001055 305 SNSDV----FIFDD-PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH------FLS-QVDR-----IILVH-EGMVK 366 (1171)
Q Consensus 305 ~~~~v----llLDE-pts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~------~l~-~~d~-----i~~l~-~G~i~ 366 (1171)
.+|++ ||||| ||++||+. .+.+.+.+ +. .++|+|+|||+.. ++. .+|| |++|+ +|+++
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~-~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHII-EK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH-HH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHH-HH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 99999 99999 99999999 55555533 32 2689999999987 443 4799 99999 99999
Q ss_pred EecChhHHhh
Q 001055 367 EEGTFEDLSN 376 (1171)
Q Consensus 367 ~~g~~~~l~~ 376 (1171)
.|+.+++.+
T Consensus 330 -~g~~~~~~~ 338 (460)
T 2npi_A 330 -AVDDVYKRS 338 (460)
T ss_dssp -CCCHHHHHH
T ss_pred -ECCHHHHhh
Confidence 999887743
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=256.88 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=73.9
Q ss_pred cChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE----eC
Q 001055 289 ISGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV----HE 362 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~--~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l----~~ 362 (1171)
|||||||||+|||+|+.+| ++|||||||+|||+.+.+++.+.+.+.. +|+|+|+|||+++++..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 7999999999999999999 9999999999999999999999877665 689999999999999889999999 99
Q ss_pred CEEEEe
Q 001055 363 GMVKEE 368 (1171)
Q Consensus 363 G~i~~~ 368 (1171)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 988764
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-28 Score=256.80 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=100.9
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +....++.|||+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589996 89999999999999999999999999 99999994 333321 2234577899999997 555
Q ss_pred c-cCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHH
Q 001055 882 L-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960 (1171)
Q Consensus 882 l-~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~ 960 (1171)
+ .+.... ...+........+.++++ . .| |||||++|||||+.+|++|||||||++ +..
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 5 221000 000000000011222222 1 12 999999999999999999999999999 888
Q ss_pred HHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 961 ~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
.+++.|+++..++||| ||||++.++. +...++|
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 9999998874478999 9999987653 3334455
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=249.54 Aligned_cols=202 Identities=16% Similarity=0.213 Sum_probs=138.9
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC----------------------------------------------
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---------------------------------------------- 838 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~---------------------------------------------- 838 (1171)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998443
Q ss_pred ----CCCCceEEECCEecCCCChHHHhhheEEEcCCcccc-cccHHhhccCCCCCC----H------------HHHHHHH
Q 001055 839 ----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHS----D------------ADLWEAL 897 (1171)
Q Consensus 839 ----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~~nl~~~~~~~----~------------~~i~~~l 897 (1171)
.+.+|.+++||.+++..+.......+++.||+..++ .+++.+++...+... + +++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578999999875444555566788889887665 667877764321100 0 1111111
Q ss_pred HHh------------cH-HHHHHHccCCcchh------hhcCCCCCChhHHHHHHHHHHhc----cCCCEEEEecCCcCC
Q 001055 898 ERA------------HL-KDAIRRNSLGLDAQ------VSEAGENFSVGQRQLLSLSRALL----RRSKILVLDEATAAV 954 (1171)
Q Consensus 898 ~~~------------~~-~~~i~~lp~gl~~~------~~~~~~~LSgGqkqrl~lArall----~~p~iLlLDEpTs~L 954 (1171)
... .+ ....+.++.|++.. .+.....||||||||++|||||+ ++|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 00011233344332 12334689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEE--EEEeCcEEE-EecChhH
Q 001055 955 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI--LLLDSGRVL-EYDTPEE 1007 (1171)
Q Consensus 955 D~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i--~vl~~G~i~-~~g~~~e 1007 (1171)
|+.+.+.+.+.|++...++|+|+|||+.+.+..||++ ++|.+|+.. ...+.++
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999986678999999998777779987 788887653 3344444
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=241.15 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=76.0
Q ss_pred cCCCCCChhHHHHHHHHHHhc------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEE
Q 001055 919 EAGENFSVGQRQLLSLSRALL------RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 991 (1171)
....+|||||||||+|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+..||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455679999999999999999 7999999999999999999999999999875 479999999999997779999
Q ss_pred EEEeCcEEEE
Q 001055 992 LLLDSGRVLE 1001 (1171)
Q Consensus 992 ~vl~~G~i~~ 1001 (1171)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=243.41 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=76.8
Q ss_pred CCCCccChHHHHHHHHHHHhc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE
Q 001055 284 ERGVNISGGQKQRVSMARAVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357 (1171)
Q Consensus 284 ~~g~~LSGGqrqRv~LAraL~------~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 357 (1171)
....+|||||||||+|||||+ .+|++|||||||++||+.+.+++++.+.+....|+|+|+||||+++...||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 456789999999999999999 79999999999999999999999998877766799999999999998789999
Q ss_pred EEEeCCEEEE
Q 001055 358 ILVHEGMVKE 367 (1171)
Q Consensus 358 ~~l~~G~i~~ 367 (1171)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-25 Score=227.51 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=105.2
Q ss_pred eeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC--CCcccHHHHHhcCCCCCHHHHHH
Q 001055 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW--IFNATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 183 ~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
||||++++||+++|+||||||||||++++.+.....++. ...|+++|++. .+.+++.+++.. ....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d-----~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSD-----FCRGLMSDDENDQTVTGAAFDVLHY-------IVSK 68 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHH-----HHHHHHCSSTTCGGGHHHHHHHHHH-------HHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccH-----HHHHHhcCcccchhhHHHHHHHHHH-------HHHH
Confidence 689999999999999999999999999866432211100 01256677653 234444444321 0000
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH----------------HH
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----------------VG 324 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~----------------~~ 324 (1171)
.. ..+....++ .....|||||||++||||+..+|++++|||||++||+. ..
T Consensus 69 ~~------------~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 69 RL------------QLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp HH------------HTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred HH------------hCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 00 112222222 22456999999999999999999999999999999999 55
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE
Q 001055 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357 (1171)
Q Consensus 325 ~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 357 (1171)
+.+.+.+.....+|.|+|+||||++++..++++
T Consensus 136 ~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 136 QQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 777776555544589999999999999887665
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-24 Score=224.16 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=106.9
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcc--cccccHHhhcc
Q 001055 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD 883 (1171)
Q Consensus 806 ~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~tv~~nl~ 883 (1171)
||||++++||+++|+||||||||||++++.+ |...+ +.+.+| |+++|++. .+.+++.+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 22222 122333 67777752 1122222111
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHH------
Q 001055 884 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR------ 957 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~------ 957 (1171)
.. .....+..|+....+.. ...|||||||++||||+..+|++|+|||||++||+.
T Consensus 63 --------------~~----~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 --------------HY----IVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------------HH----HHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------------HH----HHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 10 00112234555544443 347999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEE
Q 001055 958 ----------TDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 958 ----------t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 991 (1171)
..+.+++.|+++. +|.|+|+|||+++++..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 5577888876553 488999999999999887765
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-24 Score=223.39 Aligned_cols=148 Identities=13% Similarity=0.164 Sum_probs=109.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~ 895 (1171)
+++|+||||||||||+++|+|++. |.++|.+.........++++||++|++ +..+|+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--hh-------
Confidence 689999999999999999999985 556776653332124577899999986 33344310 00
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH-----hccCCCEEEEec--CCcCCCHHHHHHHHHHHHH
Q 001055 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA-----LLRRSKILVLDE--ATAAVDVRTDALIQKTIRE 968 (1171)
Q Consensus 896 ~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra-----ll~~p~iLlLDE--pTs~LD~~t~~~i~~~l~~ 968 (1171)
....+..+++.+.+||||||||++|||| ++.+|++||||| ||+++|+...+.+.+.+++
T Consensus 63 --------------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 --------------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp --------------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred --------------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0000123455567899999999999996 999999999999 9999999999999999976
Q ss_pred HcCCcEEEEEec---Chhhhhh-cCEEEEEeCcEEEEe
Q 001055 969 EFKSCTMLIIAH---RLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 969 ~~~~~tvi~vtH---~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
.+.|+|+++| +++++.. ||| .+|+|++.
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 5677888885 8888877 888 56777663
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-25 Score=235.23 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=94.0
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEEEEecCCCCCcccHHHHH-
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQVSWIFNATVRDNI- 247 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~~~l~~~Tv~eni- 247 (1171)
+++|+|+ ++|++++|+||||||||||+++|+|+ +|++|.+.. .+..|||+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688985 89999999999999999999999999 999887642 234589999987 5666
Q ss_pred hcCCCCCHHHHHHHHHHcC---chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001055 248 LFGSAFEPARYEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324 (1171)
Q Consensus 248 ~~g~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~ 324 (1171)
.++.+ .+........ +.+.++ . .| ||||||+|||||+.+|++|||||||++ ++
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 81 PYLRP----LHDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp TTTHH----HHHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHH----HHHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 33210 0000000000 011111 1 12 999999999999999999999999999 77
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 325 ~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+.+++.+.+. .+|+|+| ||||+++++. +...++|.
T Consensus 137 ~~l~~~l~~l-~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRL-GFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTB-CTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHh-cCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 7888866655 5688999 9999887653 33345553
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=224.08 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCccChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE--E
Q 001055 285 RGVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI--I 358 (1171)
Q Consensus 285 ~g~~LSGGqrqRv~LAraL~----~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i--~ 358 (1171)
....||||||||++|||||+ .+|++|||||||++||+..++.+++.+.+. .++.|+|+|||+.+.+..||++ +
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~~~~~~d~~~~v 294 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKIVMEAADLLHGV 294 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTTGGGGCSEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhhCceEEEE
Confidence 35689999999999999997 689999999999999999999999877665 3578999999998877889987 7
Q ss_pred EEeCCEE
Q 001055 359 LVHEGMV 365 (1171)
Q Consensus 359 ~l~~G~i 365 (1171)
+|.+|..
T Consensus 295 ~~~~g~s 301 (322)
T 1e69_A 295 TMVNGVS 301 (322)
T ss_dssp EESSSCE
T ss_pred EEeCCEE
Confidence 8888854
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-24 Score=248.60 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=129.9
Q ss_pred CcceeeeEEEcCCC--------------------EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 802 PVLHGLSFTIPPSD--------------------KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge--------------------~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.+|++|||+|++|+ ++||+||||||||||+++|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred hheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG--qkqrl~lArall 939 (1171)
.++++|++.....|+.+|+.+... ...+.+.++..++.+ . ..... |||| ||||++|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~-----------~-~~~~~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYE-----------Y-DFFII-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGG-----------C-SEEEE-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCc-----------c-CCeEE-eCCCCccHHHHHHHHHHH
Confidence 278999975445689888764321 123444444443321 1 11122 9999 999999999999
Q ss_pred c----------CCCEEEEecCCcCCCHHHHHHHHHHHHHHc----------CCcEEEEEecChhh--hhh-cCEEE
Q 001055 940 R----------RSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNT--IID-CDRIL 992 (1171)
Q Consensus 940 ~----------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~----------~~~tvi~vtH~~~~--~~~-~d~i~ 992 (1171)
+ +|++|+|||||++||+.++..+++.|++.. ...++++.||.++. ++. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999999998888762 13678889999886 665 77763
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.7e-24 Score=241.49 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=113.2
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEc
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 868 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 868 (1171)
+++++| | .++++++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 556666 5 1489999999999999999999999999999999999999999999998642 22111233343332
Q ss_pred CCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001055 869 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948 (1171)
Q Consensus 869 Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLD 948 (1171)
| |||+||++|||||..+|++||||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred cCCcCCCHHHHHHHHHHHHHHcCCc-EEEEEecChhhhhhcCEEEEEeCcE
Q 001055 949 EATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 949 EpTs~LD~~t~~~i~~~l~~~~~~~-tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
|||+. .+++.|+.+..++ |+|+++|+.+....|||+++|.+|+
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 99982 3456666665654 7999999999777799999998875
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-24 Score=233.75 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=117.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhhheEEEcCCcccccc-c-H
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKILGIIPQSPVLFSG-T-V 878 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-t-v 878 (1171)
..|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |.++...++ ...+..++|+||++.+|.. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 877754432 2346789999999877743 2 1
Q ss_pred Hhhcc---CCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH-----HHHhccCCCEEEE
Q 001055 879 RFNLD---PFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL-----SRALLRRSKILVL 947 (1171)
Q Consensus 879 ~~nl~---~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l-----Arall~~p~iLlL 947 (1171)
.+++. +... ..+.++.++++... ...++ .+|||||+||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22221 1111 12334444443211 11111 4699999999999 8999999999999
Q ss_pred ecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 948 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 948 DEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
||||+++|.+++..+++.|.+..++.| ++| +..||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999987766666 677 456888887654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-23 Score=248.54 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=153.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---ecCCCC-----
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFG----- 856 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~---~i~~~~----- 856 (1171)
..++++++++.|+.+ ..+|+++ |+|.+||++||+||||||||||+++|+|+++|+.|.|.++|. ++..+.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 358899999999633 3699999 999999999999999999999999999999999999999998 554321
Q ss_pred hHHHhhheEEEcCC-cccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 857 LMDLRKILGIIPQS-PVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~-~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
...+++.++|++|+ ..++ ..|+.+|+... .+.. ..........+ +....||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~------------~~~~~~v~~~l-d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDF------------RDRGQHVLLIM-DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHH------------HTTTCEEEEEE-ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHH------------HhCCCCHHHHH-HhHHHHHHHH-HHHHH
Confidence 34577889999995 3333 44788776431 1110 00000111111 2245699999 99999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-----Cc-----EEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-----SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-----~~-----tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
| +.+|++ |+|||+.+...+.+.+.+..+ |+ ||+++|||++ ...||++++|.+|+|+..|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 899998 999999999999999988754 43 9999999999 45599999999999999999
Q ss_pred hhHHhh
Q 001055 1005 PEELLS 1010 (1171)
Q Consensus 1005 ~~el~~ 1010 (1171)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 998865
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-22 Score=205.13 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=95.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC-CCccc------eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHc
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPV-SDASA------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 265 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 265 (1171)
+++|+||||||||||+++|+|++... .|... ..+..+||++|++ ++.+|++ +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~------------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK------------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-------------
Confidence 68999999999999999999997522 11110 1234689999986 2223331 100
Q ss_pred CchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH-----hccCCCEEEEeC--cCCCCCHHHHHHHHHHHHhhccCC
Q 001055 266 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA-----VYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 266 ~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra-----L~~~~~vllLDE--pts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
. .+ ....++..+.+||||||||++|||| |+.+|++++||| ||++||+...+++.+.+.. .+
T Consensus 63 ~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~ 130 (178)
T 1ye8_A 63 F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PN 130 (178)
T ss_dssp T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TT
T ss_pred c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CC
Confidence 0 00 0124566677999999999999996 999999999999 9999999999999886543 46
Q ss_pred CEEEEEcC---Ccchhhh-cCE
Q 001055 339 KTRVLVTN---QLHFLSQ-VDR 356 (1171)
Q Consensus 339 ~tvi~vtH---~~~~l~~-~d~ 356 (1171)
.|+|++|| +..+++. +||
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC
T ss_pred CeEEEEEccCCCchHHHHHHhc
Confidence 77888885 7778775 566
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-22 Score=216.63 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=111.4
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHH
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 879 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~ 879 (1171)
.++++| .+|++||++||+||||||||||+++|+|+++ .|.+++.....-+....++.++|+||++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 368888 7999999999999999999999999999985 355554222211112245679999999987754 777
Q ss_pred hhccCC----C-----CCCHHHHHHHH----------HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 880 FNLDPF----S-----EHSDADLWEAL----------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 880 ~nl~~~----~-----~~~~~~i~~~l----------~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+.++ . .....++.+.+ +..++.++..+ ....|| +|+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----------MPEAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----------CTTSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----------cCCcEE-----------EEEE
Confidence 776321 1 11222333222 22233333332 234566 9999
Q ss_pred CCCEEEEecCCcCC----CHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEe
Q 001055 941 RSKILVLDEATAAV----DVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD 995 (1171)
Q Consensus 941 ~p~iLlLDEpTs~L----D~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~ 995 (1171)
+|++++|||||+++ |+..++.+++.++++. .+.|+|+||||++++.. ||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7889999999998875 36899999999999987 99999984
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-22 Score=236.86 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=126.5
Q ss_pred CCceeeeeEEecCCC--------------------EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCc---EEEEec
Q 001055 178 RPTLLNINLDIPVGS--------------------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ 234 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge--------------------~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~---i~~v~Q 234 (1171)
+.+|++|||++++|+ +++|+||||||||||+|+|+|+++|++|.+...... .++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999998876432221 289999
Q ss_pred CCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH--HHHHHHHHHHhcc-------
Q 001055 235 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYS------- 305 (1171)
Q Consensus 235 ~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG--qrqRv~LAraL~~------- 305 (1171)
++...+.|+.||+.++.. ..+..+.++..++.+. + ..+ .|||| ||||++|||||..
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~-------~-~~~-----~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY-------D-FFI-----IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC-------S-EEE-----EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc-------C-CeE-----EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 976557899999877642 2234455555554321 1 111 29999 9999999999999
Q ss_pred ---CCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-----cC----CCEEEEEcCCcch--hhh-cCEE
Q 001055 306 ---NSDVFIFDDPLSALDAHVGRQVFDRCIRGE-----LS----GKTRVLVTNQLHF--LSQ-VDRI 357 (1171)
Q Consensus 306 ---~~~vllLDEpts~LD~~~~~~l~~~l~~~~-----~~----~~tvi~vtH~~~~--l~~-~d~i 357 (1171)
+||+++|||||++||+..++.+++.+.+.. .. ..++++.||.+.. ++. +|+|
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999999999999998888766542 12 3567888998776 543 4555
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-22 Score=219.34 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=95.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW 894 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~ 894 (1171)
.+||+||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.+|+.+.......+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2346789999999988765 999999765432211112
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcE
Q 001055 895 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 974 (1171)
Q Consensus 895 ~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~t 974 (1171)
+.+......++...++ ..||||||||+++|||++. +++|||||.+||+... .+.+.|.+ ..+
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---cCc
Confidence 2222222223322222 3599999999999999886 9999999999999873 33444443 389
Q ss_pred EEEEecChhhh
Q 001055 975 MLIIAHRLNTI 985 (1171)
Q Consensus 975 vi~vtH~~~~~ 985 (1171)
+|+|.|..+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99999987765
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-20 Score=210.60 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEE
Q 001055 923 NFSVGQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall---------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
.||||||||++||++|+ .+|+||||||||++||+...+.+.+.|.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998853 89999999 444 8999999
Q ss_pred EeCcEEEEecChhHH
Q 001055 994 LDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 994 l~~G~i~~~g~~~el 1008 (1171)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-21 Score=219.20 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=124.9
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHH--hhheEEEcCCcc-cccc
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL--RKILGIIPQSPV-LFSG 876 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-lf~~ 876 (1171)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..+ |..|+|++|++. ++..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 456788999999999999999999999999999999999999999998865431 223 457999999987 6644
Q ss_pred -cHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCc
Q 001055 877 -TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATA 952 (1171)
Q Consensus 877 -tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs 952 (1171)
|+++|+.... ...+. ..++. .|+.........+|| |||++||||++.+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~------------~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE------------EEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc------------hHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8888875310 00000 00111 122221222233588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEec---------Chhhhhh-cCEEEEEeCcEE
Q 001055 953 AVDVRTDALIQKTIREEFKSCTMLIIAH---------RLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 953 ~LD~~t~~~i~~~l~~~~~~~tvi~vtH---------~~~~~~~-~d~i~vl~~G~i 999 (1171)
|+|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 22322 14789999999 3344444 789999999974
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-22 Score=225.04 Aligned_cols=178 Identities=16% Similarity=0.228 Sum_probs=127.2
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEE-----------------------EcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFT-----------------------IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~-----------------------i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 577877775 899999999999999999999999999999
Q ss_pred CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhh
Q 001055 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918 (1171)
Q Consensus 841 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~ 918 (1171)
.+|. .++++|+|++.++..|+++|+.... ...+. .....+.++++.+..+.. .
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~---~ 171 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSD---Y 171 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCS---C
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCcc---c
Confidence 8663 4699999999998789999986532 11110 001123344444443332 1
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh--cCEEEEEeC
Q 001055 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDS 996 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~--~d~i~vl~~ 996 (1171)
.....|||||+||+++||+++.+|+|||||||+..+|+.. ..+.+.. + .+|+|+|+.+.... ++|.+.+.+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 2234799999999999999999999999999999998621 1122221 2 45677777665432 555554444
Q ss_pred c
Q 001055 997 G 997 (1171)
Q Consensus 997 G 997 (1171)
|
T Consensus 245 ~ 245 (312)
T 3aez_A 245 T 245 (312)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=215.22 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=125.0
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHH--hhheEEEcCCcc-ccc-c
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDL--RKILGIIPQSPV-LFS-G 876 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 876 (1171)
..+||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999986542 1222 457999999987 664 4
Q ss_pred cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcC
Q 001055 877 TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAA 953 (1171)
Q Consensus 877 tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~ 953 (1171)
|+++|+..... ..+. ..++. .|+.........+|| |||++||||++.+|+ +|+|| ||+|
T Consensus 228 tv~e~l~~~~~~~~d~------------~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE------------EEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH------------HHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 88888753100 0000 00111 122221122223588 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEec---------Chhhhhh-cCEEEEEeCcEE
Q 001055 954 VDVRTDALIQKTIREEFKSCTMLIIAH---------RLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 954 LD~~t~~~i~~~l~~~~~~~tvi~vtH---------~~~~~~~-~d~i~vl~~G~i 999 (1171)
+|+.+.. +.+.+ ..+.|+|++|| .++.+.. ++.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22222 14789999999 3344444 789999999874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-20 Score=216.26 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=144.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC-------CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-------FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~-------~~~ 857 (1171)
..++.+++++.|+.+ ..+|+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.|.+.|.+..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 348899999999733 3699999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lAr 936 (1171)
..+++.+.+++|.+. + ....+..++....+.++... .+.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~-----------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P-----------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C-----------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC----C-----------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 123333455544321 1 12233333444444444332 122110 012345799999 999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--C-Cc-----EEEEEecChhhhhhcCEEEEEeCcEEEEecChhHH
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--K-SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~-~~-----tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+.+|++ |+|+|+.....+.+.+.+.. . |. ||+++|||++ -.-||+++++.+|+|+..|+++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999999875 2 55 8999999999 333999999999999999999887
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
...
T Consensus 254 ~~~ 256 (347)
T 2obl_A 254 NHF 256 (347)
T ss_dssp TCS
T ss_pred CCC
Confidence 643
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-22 Score=224.47 Aligned_cols=138 Identities=13% Similarity=0.117 Sum_probs=108.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEE-----------------------ecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLD-----------------------IPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~-----------------------i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 43 ~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 43 QIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred eEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 589999999994 577777765 8999999999999999999999999999987
Q ss_pred CCccceecCcEEEEecCCCCCcccHHHHHhcCC----C--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 219 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGS----A--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 219 ~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.|. ..+++++|++.+++.|++||+.+.. + .+.+.+.+.++.. . .+.. ......||||
T Consensus 118 ~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l------~---~~~~---~~~~~~lS~G 180 (312)
T 3aez_A 118 DHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV------K---SGSD---YACAPVYSHL 180 (312)
T ss_dssp TTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH------H---TTCS---CEEEEEEETT
T ss_pred CCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh------C---CCcc---cCCcccCChh
Confidence 653 4599999999988679999997532 1 1223333333322 1 1111 1123589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
|+||+++||+++.+|+|+|||||+..+|+
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 99999999999999999999999999986
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-19 Score=229.48 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=122.7
Q ss_pred ccEEEEe-----eEEEeCCCCCCcceeeeEEEcC-------CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 785 GSIKFED-----VVLRYRPELPPVLHGLSFTIPP-------SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 785 g~i~~~~-----vs~~y~~~~~~~l~~vs~~i~~-------Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
+.|+++| |++.|.++ ..+++|++|++++ |++++|+||||||||||++++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99999433 3699999999988 999999999999999999999 99864
Q ss_pred CCCChHHHhhheE-EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 853 AKFGLMDLRKILG-IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 853 ~~~~~~~~r~~i~-~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
..++| ||||++. ..|+.+++... .++.+.+. ....++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-
Confidence 24566 9999974 34677766311 11222111 112357777665
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHH-HHHHHHHHHHHc-C-CcEEEEEecChhhhhh-cCEEEEEeCcEEE--EecCh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVL--EYDTP 1005 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t-~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~--~~g~~ 1005 (1171)
+++|++++.+|+++||||||+|+|+.. ...+++.|+.+. . ++|+|++||+++.+.. ||++.++ +|++. +.|++
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999999999987 455777777764 3 7999999999999887 9999887 58887 44655
Q ss_pred hH
Q 001055 1006 EE 1007 (1171)
Q Consensus 1006 ~e 1007 (1171)
++
T Consensus 938 ~~ 939 (1022)
T 2o8b_B 938 ED 939 (1022)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=194.08 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=70.3
Q ss_pred cCCCCCChhHHH------HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEE
Q 001055 919 EAGENFSVGQRQ------LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 919 ~~~~~LSgGqkq------rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 991 (1171)
.....||||||| ||++||+|+.+|++|||||||++||+.....+.+.|+++. .++|+|+|||+.+....||+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 345679999999 6788899999999999999999999999999999998865 367999999997766669999
Q ss_pred EEEe--CcEE
Q 001055 992 LLLD--SGRV 999 (1171)
Q Consensus 992 ~vl~--~G~i 999 (1171)
++|+ +|..
T Consensus 324 ~~l~~~~g~s 333 (339)
T 3qkt_A 324 IRISLENGSS 333 (339)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCcc
Confidence 9996 5543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-20 Score=223.41 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=141.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------- 224 (1171)
+.++++++++.|+. +.++|+++ |++.+|++++|+||||||||||+++|+|..+|+.|.+..
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 35699999 999999999999999999999999999999998763321
Q ss_pred ----ecCcEEEEecC-CCC-CcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 225 ----IRGTVAYVPQV-SWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 225 ----~~~~i~~v~Q~-~~l-~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
.++.++|++|+ ..+ ...|+.+|+.+.. ++.. ..+ .+...+=+....||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~---~~~----------~~v~~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFR---DRG----------QHVLLIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHH---TTT----------CEEEEEEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHH---hCC----------CCHHHHHHhHHHHHHHH-HHHH
Confidence 23458999995 333 4679999997531 1111 000 00001112246899999 9999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc---C-CC-----EEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---S-GK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~---~-~~-----tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
|| +.+|++ |++||+.+...+.+.+.+... + |+ |++++|||++ ...+|++++|.+|+++.+|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 888888 999999999999987665544 2 64 9999999999 5668999999999999998
Q ss_pred ChhHHh
Q 001055 370 TFEDLS 375 (1171)
Q Consensus 370 ~~~~l~ 375 (1171)
++.++.
T Consensus 338 ~~~~~~ 343 (438)
T 2dpy_A 338 RLAEAG 343 (438)
T ss_dssp HHHHTT
T ss_pred CHHHcc
Confidence 876653
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=212.62 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCCC-ChhHHHHHHHHHHhccCC--CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 921 GENF-SVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 921 ~~~L-SgGqkqrl~lArall~~p--~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
...| ||||||||+|||||+.+| ++|||||||+|||+.+...|.+.|+++..++|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3456 999999999999999999 9999999999999999999999999887789999999999988889999999665
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-21 Score=207.11 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=101.0
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCCcc-----
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNA----- 241 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~----- 241 (1171)
..|+||||++++|++++|+||||||||||+++|+|++ | |.+.. .+..++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4699999999999999999999999999999999998 5 44321 12458999999866532
Q ss_pred ------cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH-----HHHhccCCCEE
Q 001055 242 ------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM-----ARAVYSNSDVF 310 (1171)
Q Consensus 242 ------Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L-----AraL~~~~~vl 310 (1171)
++.+| .+|. ....+.++++.... ..++ .+||||||||++| ||+|+.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~--~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT--LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEE--EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCC--cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 22222 1221 12334444443221 1111 4799999999999 89999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
+|||||+++|.++...+.+.+.... .++| ++| +..+|.|++.++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~-~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLN-IELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHH-HHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HHHH---hhc----ccCCCEEEECCC
Confidence 9999999999988888877665432 2334 566 456788877654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=196.73 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCccChHHHH------HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 285 RGVNISGGQKQ------RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 285 ~g~~LSGGqrq------Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
....||||||| |+++||+|+.+|++|||||||+|||+..+..+++.+......++|+|+||||.++...||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 35689999999 678889999999999999999999999999999977665556889999999988777899999
Q ss_pred EEe
Q 001055 359 LVH 361 (1171)
Q Consensus 359 ~l~ 361 (1171)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-20 Score=227.07 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=120.8
Q ss_pred CCcceeeeE-EEcCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccccc
Q 001055 801 PPVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGT 877 (1171)
Q Consensus 801 ~~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~--l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 877 (1171)
.++|++++| .|++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. .......++.+|+++|++... ++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-GK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT-TS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc-Cc
Confidence 379999999 999999999999999999999999 6899999999999999873 222334566799999997531 11
Q ss_pred HHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc-----
Q 001055 878 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA----- 952 (1171)
Q Consensus 878 v~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs----- 952 (1171)
+.. +..... .+..++++..++.+...+.+ ..|||| +|++++|||||+
T Consensus 103 l~~-~~~~~~---~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 103 LFI-LDASPD---PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp EEE-EECCCC---SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred EEE-EecCcc---cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 110 011100 00011122233333333322 246776 478999999998
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh---------hh-cCEEEEEeCc
Q 001055 953 AVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI---------ID-CDRILLLDSG 997 (1171)
Q Consensus 953 ~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~---------~~-~d~i~vl~~G 997 (1171)
++|+...+.+.+.++.+. .++|+|+|||+++.+ .. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 469999999999998865 489999999999984 45 9999999983
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-20 Score=198.64 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=116.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHH
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 893 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i 893 (1171)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++. .+++++||++|+. .++ +.++..+.-..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999998885443 4688899999986 332 334432100000
Q ss_pred HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH-HHHH---HhccCCCEEEEec--CCcCCCHHHHHHHHHHHH
Q 001055 894 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL-SLSR---ALLRRSKILVLDE--ATAAVDVRTDALIQKTIR 967 (1171)
Q Consensus 894 ~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl-~lAr---all~~p~iLlLDE--pTs~LD~~t~~~i~~~l~ 967 (1171)
+...+..+++.+..+|+|||+++ ++++ |++++|+|||||| ||..+|....+.+.+.+.
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 01122355666778999999998 5555 6899999999999 899999999999988887
Q ss_pred HHcCCcEEE----EEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 968 EEFKSCTML----IIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 968 ~~~~~~tvi----~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
. ..|+| .|+||.+ ..-+|+|..+++|+|++.
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 4 33444 4459874 333566666688888775
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-21 Score=203.30 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcc--------ceecCcEEEEecCCCCC-cccHHHHHh
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS--------AVIRGTVAYVPQVSWIF-NATVRDNIL 248 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~--------~~~~~~i~~v~Q~~~l~-~~Tv~eni~ 248 (1171)
.++++| .++++|++++|+||||||||||+++|+|+++...+.. ...+..++|++|++.+| ..|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 578888 7999999999999999999999999999985221110 01124589999998776 567777764
Q ss_pred cCC---------CCCHHHHHHHHHHc-CchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH---HhccCCCEEEEeCc
Q 001055 249 FGS---------AFEPARYEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR---AVYSNSDVFIFDDP 315 (1171)
Q Consensus 249 ~g~---------~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr---aL~~~~~vllLDEp 315 (1171)
... ........+.++.. .+. . ...+.|.+.++-..++ +|+.+|++++||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~------~----------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep 150 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVL------I----------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQAR 150 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEE------E----------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEE------E----------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHH
Confidence 210 01122222222211 000 0 0012333333333332 89999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEe
Q 001055 316 LSAL----DAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVH 361 (1171)
Q Consensus 316 ts~L----D~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~ 361 (1171)
|+++ |+..++.+.+.+.+.. ..|.|+|+||||++++.. ||||++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9998 7788888888766654 348999999999999865 89999884
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=195.43 Aligned_cols=181 Identities=10% Similarity=0.102 Sum_probs=119.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999888 77654433 2455666665555544322 1112
Q ss_pred hccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH-HHHHHHHHHhccCCCEEEEecCCc---C---
Q 001055 881 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ-RQLLSLSRALLRRSKILVLDEATA---A--- 953 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq-kqrl~lArall~~p~iLlLDEpTs---~--- 953 (1171)
++... ..++++..+. +.++++..+.. +......+|.+| +||+. |+++..+|++|||||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~-----~~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQW-----FDELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHH-----HHHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHH-----HHHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 22110 0011111111 11222221221 222334689999 66666 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHcC--CcEEEEEecCh--h--------------------hhhh-cCEEEEEeCcEE
Q 001055 954 VDV-RTDALIQKTIREEFK--SCTMLIIAHRL--N--------------------TIID-CDRILLLDSGRV 999 (1171)
Q Consensus 954 LD~-~t~~~i~~~l~~~~~--~~tvi~vtH~~--~--------------------~~~~-~d~i~vl~~G~i 999 (1171)
+|. .....+.+.|+++.+ ++|||++||+. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566778888877643 79999999995 4 5555 999999998875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-19 Score=196.29 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=105.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..++
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 445566542 5999999 9999999999999999999999999999998 999999987653211 11112
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+++|. +.|++. ..| |++|||+|..+|++|
T Consensus 74 ~v~q~---------------------------------------~~gl~~------~~l------~~~la~aL~~~p~il 102 (261)
T 2eyu_A 74 IVNQR---------------------------------------EVGEDT------KSF------ADALRAALREDPDVI 102 (261)
T ss_dssp EEEEE---------------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEE
T ss_pred eeeHH---------------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEE
Confidence 22221 112211 122 899999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
+||||| |+++...+.+ ....+.||++++|+.+....|||+++|..
T Consensus 103 llDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 103 FVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp EESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred EeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 999999 9988655444 33368999999999986666999987754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-19 Score=205.83 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=96.3
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
+++++||.+++|+.++|+||||||||||+++|+|+++|++|.+.. .+. +.+.....++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i-~~~-------~e~~~~~~~~~i------------ 219 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI-EDT-------EEIVFKHHKNYT------------ 219 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE-ESS-------CCCCCSSCSSEE------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE-CCe-------eccccccchhEE------------
Confidence 799999999999999999999999999999999999998765432 111 100000000000
Q ss_pred HHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCC
Q 001055 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339 (1171)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~ 339 (1171)
+ .+. + |||+||++|||||..+|++++|||||+ .+ +++.+......+.
T Consensus 220 ------~--------------~~~--g----gg~~~r~~la~aL~~~p~ilildE~~~---~e----~~~~l~~~~~g~~ 266 (330)
T 2pt7_A 220 ------Q--------------LFF--G----GNITSADCLKSCLRMRPDRIILGELRS---SE----AYDFYNVLCSGHK 266 (330)
T ss_dssp ------E--------------EEC--B----TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----HHHHHHHHHTTCC
T ss_pred ------E--------------EEe--C----CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----HHHHHHHHhcCCC
Confidence 0 000 0 899999999999999999999999998 22 2333322222235
Q ss_pred EEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 340 TRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 340 tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
|+|+++|+.+..+.+||+++|.+|.
T Consensus 267 tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 267 GTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEEcccHHHHHhhhheehhcCC
Confidence 8999999999777899999998875
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-18 Score=220.79 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=121.0
Q ss_pred CCcEEEEe-----eEEEcCCCCCCCceeeeeEEecC-------CCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecC
Q 001055 160 LPAISIRN-----GYFSWDSKAERPTLLNINLDIPV-------GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 227 (1171)
Q Consensus 160 ~~~i~~~~-----~s~~~~~~~~~~~l~~isl~i~~-------Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~ 227 (1171)
.+.|+++| +++.|+. ++++++|++|++++ |++++|+|||||||||||+++ |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------H
T ss_pred CceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------h
Confidence 34699999 9999842 46899999999987 999999999999999999999 987642 2
Q ss_pred cEE-EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVA-YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~-~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++| ||||++. ..||.|+|... .++.+.+ ..+..++|+|+++ +++|++++.+
T Consensus 817 qiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~-----------~~~~stf~~em~~-~a~al~la~~ 868 (1022)
T 2o8b_B 817 QMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRI-----------MSGESTFFVELSE-TASILMHATA 868 (1022)
T ss_dssp TTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCT
T ss_pred heeEEeccCcC--CCCHHHHHHHH--------------cCCHHHH-----------hhchhhhHHHHHH-HHHHHHhCCC
Confidence 456 9999873 55677776421 1111111 1122478888875 9999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHH-HHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 307 SDVFIFDDPLSALDAHVGRQ-VFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~-l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
|+++|||||++|+|+..... ++..+.....+ |+++|++||+.+.+.. +|++.++ +|++.
T Consensus 869 ~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 869 HSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp TCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999999999999987544 45544444434 8999999999998875 6888776 58776
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-19 Score=204.44 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=111.8
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCC-CC-cc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-NA 241 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~~ 241 (1171)
+++||++++|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 46788999999999999999999999999999999987754321 124899999987 65 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCC
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL 319 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~L 319 (1171)
|++||+.++.... .. ...++.. |..........+|| |||++|||||..+|+ +|+|| ||++|
T Consensus 171 ~v~e~l~~~~~~~----------~d-~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcC----------Cc-chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999997531000 00 0001111 10001112234699 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEcCCc---------chhhh-cCEEEEEeCCE
Q 001055 320 DAHVGRQVFDRCIRGELSGKTRVLVTNQL---------HFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 320 D~~~~~~l~~~l~~~~~~~~tvi~vtH~~---------~~l~~-~d~i~~l~~G~ 364 (1171)
|+..... .+. ...|.|+|++||.- +.+.. .+.|..+..|+
T Consensus 234 D~~~~~~---~~~--~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 234 NMLPQAR---EFN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp GGHHHHH---HHH--HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHHH---HHH--HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9985532 121 12478999999932 22222 37899999886
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=191.70 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=73.2
Q ss_pred ccChHHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 288 NISGGQKQRVSMARAVY---------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~---------~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
.||||||||++||++|+ .+|+||||||||++||+..++.+++.+.... .|+|++||. +. .+|+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--cCCEEE
Confidence 69999999999999999 8999999999999999999999998765543 799999994 44 789999
Q ss_pred EEeCCEEEEecChhHH
Q 001055 359 LVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 359 ~l~~G~i~~~g~~~~l 374 (1171)
+|++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999988765
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-19 Score=200.86 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=90.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCH----HHH
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEP----ARY 258 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~----~~~ 258 (1171)
.++|+||||||||||+++|+|...|++|.+.. .+..++|++|++.++ ..||.||+.||..... +.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 48999999999999999999999998875421 234699999999886 6799999999854321 222
Q ss_pred HHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC
Q 001055 259 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
.+.++ ....+.++ .+||||||||+++|||++. +++||||+++||+...+. +..+. ..
T Consensus 84 ~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~-l~~L~---~~- 140 (270)
T 3sop_A 84 EKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEF-MKHLS---KV- 140 (270)
T ss_dssp HHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHH-HHHHH---TT-
T ss_pred HHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHH-HHHHH---hc-
Confidence 22222 22222222 3799999999999999887 999999999999987433 33332 23
Q ss_pred CEEEEEcCCcchh
Q 001055 339 KTRVLVTNQLHFL 351 (1171)
Q Consensus 339 ~tvi~vtH~~~~l 351 (1171)
.++|+|.|..+.+
T Consensus 141 ~~vI~Vi~K~D~l 153 (270)
T 3sop_A 141 VNIIPVIAKADTM 153 (270)
T ss_dssp SEEEEEETTGGGS
T ss_pred CcEEEEEeccccC
Confidence 7889888876654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-19 Score=202.05 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=129.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceec--------------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 226 (1171)
+.++++++++.|+. +..+++++ |+|.+||+++|+||||||||||+++|+|..+|+.|.+....
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 45889999999963 35699999 99999999999999999999999999999999865322111
Q ss_pred -----CcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 227 -----GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 227 -----~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
..+.+++|.+. ...+++......+.+.+.+.. .+.+.-.+-+...+||+|| |||++|
T Consensus 121 ~~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~-~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh-ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 11233333210 011233333333333332221 1111111113456899999 899999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc--CCC-----EEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHH
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~--~~~-----tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
+.+|++ |+||||.....+.+.+.+... .|. |++++|||++ -..||+++.+.+|+|+.+++.+++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 588877 999999999999986655543 477 8999999998 455899999999999998877654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-17 Score=210.08 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=118.8
Q ss_pred cEEEEeeEEEeCC---CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHH--------hcCCCCCCceEEECCEecCC
Q 001055 786 SIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--------FRIVELERGRILIDGFDIAK 854 (1171)
Q Consensus 786 ~i~~~~vs~~y~~---~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l--------~g~~~p~~G~I~i~g~~i~~ 854 (1171)
.+++++...-+-. +.+.+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4777776443311 123689999999999999999999999999999999 55554443221
Q ss_pred CChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 855 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 855 ~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
+++ .+.+. . +.++.+.+ ...+|+|++++..+
T Consensus 702 ---------~~~------------~d~i~--~------------~ig~~d~l--------------~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSI------------VDCIL--A------------RVGAGDSQ--------------LKGVSTFMAEMLET 732 (934)
T ss_dssp ---------EEC------------CSEEE--E------------ECC-----------------------CHHHHHHHHH
T ss_pred ---------chH------------HHHHH--H------------hcCchhhH--------------HHhHhhhHHHHHHH
Confidence 000 00010 0 01111101 12488888888888
Q ss_pred HHHh--ccCCCEEEEecCCcCCCHHHHHHH-HHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHh
Q 001055 935 SRAL--LRRSKILVLDEATAAVDVRTDALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 935 Aral--l~~p~iLlLDEpTs~LD~~t~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|+++ +.+|+++||||||+|+|+.....+ +..++.+. .++|+|++||+.+....||++..+.+|++...++++++.
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 8888 999999999999999999888777 55555554 379999999998877779999999999999988887764
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.4e-19 Score=194.92 Aligned_cols=164 Identities=12% Similarity=0.171 Sum_probs=102.3
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 36999999999999999999999999999999999976 555443 3567899999997333448887
Q ss_pred hccCCC---C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCC
Q 001055 881 NLDPFS---E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951 (1171)
Q Consensus 881 nl~~~~---~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT 951 (1171)
|+.... . ...+.+.+ .++.+..+.+ .....||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~l~~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHR---------TLKNIVEGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHH---------HHHHHHTTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHH---------HHHHHHCCCC----eecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 753211 1 11112222 2222222222 2335799999999988 6889999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh-hh-cCEEEEEeCcEEEEecChhHHh
Q 001055 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI-ID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 952 s~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~-~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
...|.. +.+. .+.||+++||+...+ +. ++++ ++|+ ++++++
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 877764 2222 478999999974444 33 4444 5564 555554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-19 Score=184.98 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEecCCCC---hHHHh-hheE----EEcCCcccccccHHhhcc
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFG---LMDLR-KILG----IIPQSPVLFSGTVRFNLD 883 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~tv~~nl~ 883 (1171)
++++|+|+||||||||+++|.|+++|+ .|.|.+||.++.+++ .+.+| +.+| +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987775 66787 4788 899999877 221
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 884 PFSEHSDADLWEALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~~~~~i~~-lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
. +.+. .+++.+++++ +| |+|+.+++. |||||+|||+||||++++|++
T Consensus 77 ----~-~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 ----V-SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp ----C-CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred ----C-Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 0 1111 5789999999 99 999999985 999999999999999999986
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=203.48 Aligned_cols=168 Identities=15% Similarity=0.083 Sum_probs=117.5
Q ss_pred CcEEEEeeEEEcCC--CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHH--------hcCCCCCCCccceecCcEE
Q 001055 161 PAISIRNGYFSWDS--KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--------LGELPPVSDASAVIRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~--~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l--------~G~~~~~~g~~~~~~~~i~ 230 (1171)
..|.+++...-+-. .+++.+++|++|++++|++++|+||||||||||||++ .|.+-|..+. .++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~------~~~ 703 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA------EVS 703 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE------EEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc------cch
Confidence 35888877554432 1245799999999999999999999999999999999 5544342211 011
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh--ccCCC
Q 001055 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSD 308 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL--~~~~~ 308 (1171)
.+ ..++. ..++.+. ....+|+|++++..+|++| +.+|+
T Consensus 704 ~~---d~i~~-----------------------~ig~~d~--------------l~~~lStf~~e~~~~a~il~~a~~~s 743 (934)
T 3thx_A 704 IV---DCILA-----------------------RVGAGDS--------------QLKGVSTFMAEMLETASILRSATKDS 743 (934)
T ss_dssp CC---SEEEE-----------------------ECC-----------------------CHHHHHHHHHHHHHHHCCTTC
T ss_pred HH---HHHHH-----------------------hcCchhh--------------HHHhHhhhHHHHHHHHHHHHhccCCc
Confidence 11 01110 0011000 0136888888888888888 99999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHh-hcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIR-GEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~-~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
++||||||+|+|+.....+...+++ ... .|+|+|++||+.+....+|++..+.+|++...++.+++
T Consensus 744 LlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 744 LIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999999999988777443443 333 48999999999888778899999999999887765544
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-18 Score=200.60 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=113.2
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCC-CC-cc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-NA 241 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~~ 241 (1171)
+.+||++++|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 35788999999999999999999999999999999887654221 124899999987 65 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCC
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL 319 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~L 319 (1171)
|++||+.++.... .. ...++.. |..........+|| |||++|||||..+|+ +|+|| ||++|
T Consensus 228 tv~e~l~~~~~~~----------~d-~~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCC----------CH-HHHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 9999997541000 00 0001111 00001111224689 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEcCC---------cchhhh-cCEEEEEeCCE
Q 001055 320 DAHVGRQVFDRCIRGELSGKTRVLVTNQ---------LHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 320 D~~~~~~l~~~l~~~~~~~~tvi~vtH~---------~~~l~~-~d~i~~l~~G~ 364 (1171)
|+.....- +. ...|.|+|++||. ++.+.. .+.|..+..|+
T Consensus 291 D~~~~~~~---~~--~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQARE---FN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHHHH---HH--HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHHHH---HH--HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99865321 11 1247899999993 222222 37899998886
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-17 Score=208.06 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=117.2
Q ss_pred ccEEEEeeEEEeCC---CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCEecCCCChHHH
Q 001055 785 GSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 785 g~i~~~~vs~~y~~---~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
+.+++++. +++- ....+++|+||+ |++++|+||||||||||+++|+|+.. |+.|.+.- ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hh
Confidence 45888887 3322 224689999999 99999999999999999999999874 67786521 12
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL- 938 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral- 938 (1171)
+..+++++| +|.. ++.+|+.. .+|+|+++++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 346888877 4432 55555421 3789999999999999
Q ss_pred -ccCCCEEEEecC---CcCCCHHHH-HHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 939 -LRRSKILVLDEA---TAAVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 939 -l~~p~iLlLDEp---Ts~LD~~t~-~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
+.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|++||+.+....| .-.+.++++...
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 999999999999 999999886 478888877 589999999998887555 223345555444
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-17 Score=205.00 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=108.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCccce-ecCcEEEEecCCCC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV-IRGTVAYVPQVSWI 238 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-~~~g~~~~-~~~~i~~v~Q~~~l 238 (1171)
..|.+++...-.-...++++++|+||+ |++++|+||||||||||||+++|... +..|.... .+..+++++| +
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---i 622 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---I 622 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE---E
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH---h
Confidence 358888873222110246899999999 99999999999999999999999864 55564332 1234677766 3
Q ss_pred C-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh--ccCCCEEEEeCc
Q 001055 239 F-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFDDP 315 (1171)
Q Consensus 239 ~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL--~~~~~vllLDEp 315 (1171)
| ..++.||+.. .+|+|+++++.+|+++ +.+|+++|||||
T Consensus 623 ~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 623 YTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp EEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred hccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 3 3455555532 3789999999999999 999999999999
Q ss_pred ---CCCCCHHHHH-HHHHHHHhhccCCCEEEEEcCCcchhhhc
Q 001055 316 ---LSALDAHVGR-QVFDRCIRGELSGKTRVLVTNQLHFLSQV 354 (1171)
Q Consensus 316 ---ts~LD~~~~~-~l~~~l~~~~~~~~tvi~vtH~~~~l~~~ 354 (1171)
|++||+.+.. .+.+.+.+ .|.|+|++||+.+....+
T Consensus 665 grGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 665 GRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 9999998764 57776644 478999999998876544
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-17 Score=191.66 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEEe
Q 001055 923 NFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLD 995 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall----~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl~ 995 (1171)
.||||||||++||++|+ ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999998753 689999999988877799999996
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=159.28 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=70.9
Q ss_pred CCCCccChHHHHHHHHH------HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE
Q 001055 284 ERGVNISGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357 (1171)
Q Consensus 284 ~~g~~LSGGqrqRv~LA------raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 357 (1171)
....+||||||||++|| |||+.+|++++|||||++||+.+++++.+.+.+....|+|+|+|||+.+....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 44679999999999876 999999999999999999999999999997776555689999999999766678999
Q ss_pred EEE--eCCE
Q 001055 358 ILV--HEGM 364 (1171)
Q Consensus 358 ~~l--~~G~ 364 (1171)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4564
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=159.03 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=71.6
Q ss_pred hcCCCCCChhHHHHHHHH------HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCE
Q 001055 918 SEAGENFSVGQRQLLSLS------RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDR 990 (1171)
Q Consensus 918 ~~~~~~LSgGqkqrl~lA------rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~ 990 (1171)
+....+||||||||++|| |||+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 455678999999999876 99999999999999999999999999999999875 47899999999965555999
Q ss_pred EEEE--eCcEE
Q 001055 991 ILLL--DSGRV 999 (1171)
Q Consensus 991 i~vl--~~G~i 999 (1171)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-17 Score=177.74 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=99.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-------CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 882 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl 882 (1171)
.|++|++++|+||||||||||+++|+|.+.| ..|.|++++.+. .. ++++++++|...++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445788887542 11 2356677777766666888887
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-------ccCCCEEEEecCCcCCC
Q 001055 883 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL-------LRRSKILVLDEATAAVD 955 (1171)
Q Consensus 883 ~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral-------l~~p~iLlLDEpTs~LD 955 (1171)
.+........ +++.+..++++ ..+|++++|||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6533222211 11122222222 34899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCcEEEEEecChhh----hhh-cCEEEEEeCc
Q 001055 956 VR-------TD-----ALIQKTIREEF--KSCTMLIIAHRLNT----IID-CDRILLLDSG 997 (1171)
Q Consensus 956 ~~-------t~-----~~i~~~l~~~~--~~~tvi~vtH~~~~----~~~-~d~i~vl~~G 997 (1171)
+. .. ..+.+.|.+.. .++|||+|||.+.. +.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 21 24555555543 37999999995554 766 9999999875
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-18 Score=213.82 Aligned_cols=190 Identities=13% Similarity=0.229 Sum_probs=122.2
Q ss_pred cEEEEeeEEEeCCCCCCcceee----------eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEecCC
Q 001055 786 SIKFEDVVLRYRPELPPVLHGL----------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK 854 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~v----------s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i~~ 854 (1171)
.++++|+++.|+...+++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4889999999965333455444 366665 999999999999999999999989 79999999998632
Q ss_pred --C-ChHHHhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 855 --F-GLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 855 --~-~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
. ....+|..|+|+||++.+++. ||++|+... ... +.. .+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~------~~~-----------~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNA------IAG-----------EGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHH------HHC-----------SSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHH------hcC-----------Cccccc---hH
Confidence 1 134578899999999988755 888887421 110 000 011122 23
Q ss_pred HHHHHHHhccCCCEEEEecC------CcCCCHHHHHHHHHHHHHHcC---CcEEEEEecChhhh--------hh-----c
Q 001055 931 LLSLSRALLRRSKILVLDEA------TAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTI--------ID-----C 988 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEp------Ts~LD~~t~~~i~~~l~~~~~---~~tvi~vtH~~~~~--------~~-----~ 988 (1171)
++.++.+....|+++|+||| |++||+...+.+.+.++++.. +.++++++|+++.. .. +
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44455555678999999999 999999999999999998642 46789999998743 11 4
Q ss_pred CEEEEEeCcEEEEecChhHHh
Q 001055 989 DRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 989 d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
..|+|+.++.+++.|+.+++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 678999999998888876544
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-17 Score=182.26 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=99.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 257 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 257 (1171)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|.+......+.|++|++.-+ . .
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~--------v-----~--- 76 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI--------V-----N--- 76 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE--------E-----E---
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee--------e-----e---
Confidence 4899999 9999999999999999999999999999987 776655444455555543110 0 0
Q ss_pred HHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC
Q 001055 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337 (1171)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~ 337 (1171)
. ..+|....+| |++|||+|..+|++++||||| |+++...+.+. ...
T Consensus 77 ---------------q------~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~----~~~ 122 (261)
T 2eyu_A 77 ---------------Q------REVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRA----AET 122 (261)
T ss_dssp ---------------E------EEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH----HHT
T ss_pred ---------------H------HHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH----Hcc
Confidence 0 0122111233 899999999999999999999 99987655442 235
Q ss_pred CCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 338 GKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 338 ~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
|.++++++|+.+....+||++.|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 8999999999987667899988754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-17 Score=191.44 Aligned_cols=167 Identities=18% Similarity=0.116 Sum_probs=114.8
Q ss_pred Ccceee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCEecCCCChHHHhhheEEEcCCccc
Q 001055 802 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELER----GR-ILIDGFDIAKFGLMDLRKILGIIPQSPVL 873 (1171)
Q Consensus 802 ~~l~~v-s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 873 (1171)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 6776 67 899986641 25678889999888
Q ss_pred ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-------cCCCEEE
Q 001055 874 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-------RRSKILV 946 (1171)
Q Consensus 874 f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall-------~~p~iLl 946 (1171)
+..++.+|+.+..... |++|+|++.++++++ .+|++||
T Consensus 192 ~~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 7778888886532221 234455555555555 6899999
Q ss_pred EecCCcCCCHHH------------HHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 947 LDEATAAVDVRT------------DALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 947 LDEpTs~LD~~t------------~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+||||+++|+.. ...+...|.++. .++|||+++|....... ++...+...|++++++.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 234445555543 47999999999876543 4456667788887777655553
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-19 Score=205.85 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=137.1
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHHhhheEEEcC-----Cccccc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILGIIPQ-----SPVLFS 875 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 875 (1171)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4778776 8999999999999999999999999999998 899987776653 2 35678999999 788888
Q ss_pred ccHHhhccCCCCC-------CHHHHHHHHHHhcH-------------HHHHH----------------HccCCcchhhhc
Q 001055 876 GTVRFNLDPFSEH-------SDADLWEALERAHL-------------KDAIR----------------RNSLGLDAQVSE 919 (1171)
Q Consensus 876 ~tv~~nl~~~~~~-------~~~~i~~~l~~~~~-------------~~~i~----------------~lp~gl~~~~~~ 919 (1171)
.+++.||...++. +.+.+..+++.+.. .+.++ .++.++++.+.+
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 8999999754322 45556666665432 11122 235567777777
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCE--EEEecCCcCCCHH----H-----HHHHHHHHHHHcCCcEEEEEecChhh
Q 001055 920 AGENFSVGQRQLLSLSRALLRRSKI--LVLDEATAAVDVR----T-----DALIQKTIREEFKSCTMLIIAHRLNT 984 (1171)
Q Consensus 920 ~~~~LSgGqkqrl~lArall~~p~i--LlLDEpTs~LD~~----t-----~~~i~~~l~~~~~~~tvi~vtH~~~~ 984 (1171)
++..+||| ||++++++++.+|+| +|+||+|+.+|.. + +...++++....+|+|.+.++|++..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 66678999 899999999999999 9999999999965 2 34577778777789999999999763
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-17 Score=185.69 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=106.5
Q ss_pred EeeEEEeCCCCCCcceeeeE-------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHHh
Q 001055 790 EDVVLRYRPELPPVLHGLSF-------TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 790 ~~vs~~y~~~~~~~l~~vs~-------~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r 861 (1171)
.+++++|.+...+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---hh
Confidence 56777775544567777776 77899999999999999999999999999997 566655433332 11 12
Q ss_pred hheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
...++++|...... .++-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----------------------------------------------~~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----------------------------------------------TLGFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----------------------------------------------BSCHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----------------------------------------------cCCHHH----HHHHHhhhC
Confidence 23444554432110 011111 999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
|++|++|||| |.++.+.+.++. ..|.|||+++|+.+.+..|||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 777766555543 2589999999999999779999988654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-17 Score=176.08 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=102.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEE-------CCEec--
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILI-------DGFDI-- 852 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~-----~p~~G~I~i-------~g~~i-- 852 (1171)
++++|++|.|+. +++++ |.+++|.+++|+|+||||||||++.|+|.. .|+.|++.+ ++..+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 58888 899999999999999999999999999998 888888754 22222
Q ss_pred -CCCC--------hHHHhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCC
Q 001055 853 -AKFG--------LMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAG 921 (1171)
Q Consensus 853 -~~~~--------~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~ 921 (1171)
.... ...+++.+++++|....++. .+..++.......+.++. +++.. .++... +....
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~---------~~~~~--~~~~~~~v~nK~ 147 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI---------EWAVD--SNIAVLVLLTKA 147 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH---------HHHHH--TTCCEEEEEECG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH---------HHHHH--cCCCeEEEEecc
Confidence 1111 12344445555554322222 222333211111111222 22222 222222 35556
Q ss_pred CCCChhHHHH-HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC
Q 001055 922 ENFSVGQRQL-LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 971 (1171)
Q Consensus 922 ~~LSgGqkqr-l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~ 971 (1171)
..+|+||+|| +..+++++.+|+++++|||||++|......+.+.|.+...
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6799999999 8999999999999999999999999999999999987653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-17 Score=186.29 Aligned_cols=163 Identities=17% Similarity=0.076 Sum_probs=80.4
Q ss_pred EeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCceEEECCEecCCCChHHHhhheEEEc
Q 001055 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELERGRILIDGFDIAKFGLMDLRKILGIIP 868 (1171)
Q Consensus 790 ~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 868 (1171)
+||++.|+.. .++++++|+| +|+||||+|||||++.|+|. ..|++| |.++|.++.. + .-++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t--~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T--VQIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c--ceEeeEEEEe
Confidence 4788899754 6999999998 99999999999999999998 889999 8888877643 1 1245689999
Q ss_pred CCcccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001055 869 QSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947 (1171)
Q Consensus 869 Q~~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlL 947 (1171)
|++.++ ..|+.++..+.......+..+ .+.+.+.. .......++|||||||+.+|||++ +|++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~-----~l~~~l~~-------~~~~~~~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFK-----TIISYIDE-------QFERYLHDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp C---CCEEEEEEEEC-----------CT-----THHHHHHH-------HHHHHHHHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHH-----HHHHHHHH-------HHHHHHHHhCHHhhhhhhhhhhhh----eeee
Confidence 987654 448888775432111100000 01111111 111122359999999999999986 9999
Q ss_pred ecCCcC-CCHHHHHHHHHHHHHHcC--CcEEEEEecChhh
Q 001055 948 DEATAA-VDVRTDALIQKTIREEFK--SCTMLIIAHRLNT 984 (1171)
Q Consensus 948 DEpTs~-LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~ 984 (1171)
||||++ ||+... +.++++.. +.++|+.+||+..
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999985 999874 33333332 5788899999753
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-19 Score=205.07 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=128.2
Q ss_pred cceeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCEecCCCChHHHhhheEEEcCCcc
Q 001055 803 VLHGLSFTIPP--SDKVGIVGRTGAGKSSMLNTLFRIVELER----GRILI----DGFDIAKFGLMDLRKILGIIPQSPV 872 (1171)
Q Consensus 803 ~l~~vs~~i~~--Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~----G~I~i----~g~~i~~~~~~~~r~~i~~v~Q~~~ 872 (1171)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ ..+..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 99987 35555 4455555 56999999998
Q ss_pred cccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-cCCCEEEEec--
Q 001055 873 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-RRSKILVLDE-- 949 (1171)
Q Consensus 873 lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall-~~p~iLlLDE-- 949 (1171)
+|..|+++||.++....... .. ..+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~------------~~---------------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITT------------QA---------------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHH------------HH---------------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeCCchHH------------HH---------------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 88889999997643210000 00 024456677888888775 5899999999
Q ss_pred -CC------cCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 950 -AT------AAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 950 -pT------s~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+ .++|+..+..+.+.|.+..+ +.++|+++|.-....-||++.++++ +++.|+++||.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 65 58899999999999877544 7889999986333333777666654 455667777653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-17 Score=175.21 Aligned_cols=147 Identities=19% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHH
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
|++++|+||||||||||+++|+|.++ ++| +.. .+..+||++|+. .++ ++++..-. +.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~~-~~------ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRVG-LE------ 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEECC-CC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhccc-cc------
Confidence 78999999999999999999999987 766 321 244689999975 211 11111000 00
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH-HHHH---HhccCCCEEEEeC--cCCCCCHHHHHHHHHHHHhh
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV-SMAR---AVYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv-~LAr---aL~~~~~vllLDE--pts~LD~~~~~~l~~~l~~~ 334 (1171)
.-+......+|..+..+|||||+++ +|++ |+..+|+++|||| |++.+|+...+.+.+.+..
T Consensus 68 ------------~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~- 134 (189)
T 2i3b_A 68 ------------PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST- 134 (189)
T ss_dssp ------------CCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-
T ss_pred ------------CCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-
Confidence 0001112357788889999999998 5555 6899999999999 8999999988877765432
Q ss_pred ccCCCEEEE----EcCCcchhhhcCEEEEEeCCEEEE
Q 001055 335 ELSGKTRVL----VTNQLHFLSQVDRIILVHEGMVKE 367 (1171)
Q Consensus 335 ~~~~~tvi~----vtH~~~~l~~~d~i~~l~~G~i~~ 367 (1171)
.+++|+ |+|+++ +..+|+|..+++|+|..
T Consensus 135 ---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 135 ---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp ---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEE
T ss_pred ---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEE
Confidence 245553 349874 34445566666777665
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-17 Score=176.69 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=94.0
Q ss_pred CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc--eecCcEEEEecCCCCCcccHHHHHhcCC--
Q 001055 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVPQVSWIFNATVRDNILFGS-- 251 (1171)
Q Consensus 176 ~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~--~~~~~i~~v~Q~~~l~~~Tv~eni~~g~-- 251 (1171)
+++++|+|+||++++|+++||+||||||||||+++|+|.+ |.+. ..+..++|++|++.....|+.+|+.+..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3567999999999999999999999999999999999976 2221 2355699999997434679999886421
Q ss_pred -CC------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001055 252 -AF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324 (1171)
Q Consensus 252 -~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~ 324 (1171)
.+ +.+.+.+.++. +. .... .....||+||+||+++ +++..+|+++|||||....|..
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~------l~---~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKN------IV---EGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHH------HH---TTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred CCCCCcccccHHHHHHHHHH------HH---CCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 11 11222222221 11 1111 1235799999999988 6888999999999998888764
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 325 RQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 325 ~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
+. .. .+.+++++||+...+
T Consensus 150 --l~----~~--~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 150 --IR----DM--FHLRLFVDTDSDVRL 168 (245)
T ss_dssp --HH----TT--CSEEEEEECCHHHHH
T ss_pred --HH----Hh--cCeEEEEECCHHHHH
Confidence 21 11 368999999974433
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-16 Score=198.42 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=103.4
Q ss_pred cEEEEeeEEEcC----CCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCccceecCcEEEEecCC
Q 001055 162 AISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 162 ~i~~~~~s~~~~----~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~~~~~~i~~v~Q~~ 236 (1171)
.|.+++...-.- ..+++.+++|+||++++|++++|+|||||||||||+++++..-.. .|... ...-+.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v--pa~~~~i~~~d 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV--PAEEATIGIVD 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB--SSSEEEEECCS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc--cchhhhhhHHH
Confidence 577776543320 123468999999999999999999999999999999997542110 01000 00001111111
Q ss_pred CCCc-ccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc
Q 001055 237 WIFN-ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315 (1171)
Q Consensus 237 ~l~~-~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp 315 (1171)
.++. ..+.++ +..+..++|+|++|++.++++ +.+|+++|||||
T Consensus 718 ~i~~~ig~~d~-----------------------------------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP 761 (918)
T 3thx_B 718 GIFTRMGAADN-----------------------------------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDEL 761 (918)
T ss_dssp EEEEEC---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEEST
T ss_pred HHHHhCChHHH-----------------------------------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCC
Confidence 1110 011111 112235799999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHh-hc-cCCCEEEEEcCCcchhhhcCE
Q 001055 316 LSALDAHVGRQVFDRCIR-GE-LSGKTRVLVTNQLHFLSQVDR 356 (1171)
Q Consensus 316 ts~LD~~~~~~l~~~l~~-~~-~~~~tvi~vtH~~~~l~~~d~ 356 (1171)
|+|||+.....+...+++ .. ..|.|+|++||+.+....+|+
T Consensus 762 ~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 762 GRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999988888744444 32 358999999999887765554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=8.6e-16 Score=173.54 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=106.8
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhc---CCCCC
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF---GSAFE 254 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~---g~~~~ 254 (1171)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|.+|. .+.|+..+.. ...+...+.. +.+..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~------~v~~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK------KVGLAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC------CEEEEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC------eEEEEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 35899999999999999999999999999999999999887552 2444443321 0111111110 11100
Q ss_pred -----------HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH-HHHHHHHHHhccCCCEEEEeCcCC---C-
Q 001055 255 -----------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ-KQRVSMARAVYSNSDVFIFDDPLS---A- 318 (1171)
Q Consensus 255 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq-rqRv~LAraL~~~~~vllLDEpts---~- 318 (1171)
.+.+.+..+. .++..+ . .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~-----~l~~~~---l-~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDE-----LFGNDT---F-HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHH-----HHSSSC---E-EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCCCCHHHHHHHHHH-----HhccCC---E-EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 0111111111 111111 0 1222234689999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHhhcc-CCCEEEEEcCCc--c--------------------hhh-hcCEEEEEeCCEE
Q 001055 319 --LDA-HVGRQVFDRCIRGEL-SGKTRVLVTNQL--H--------------------FLS-QVDRIILVHEGMV 365 (1171)
Q Consensus 319 --LD~-~~~~~l~~~l~~~~~-~~~tvi~vtH~~--~--------------------~l~-~~d~i~~l~~G~i 365 (1171)
+|+ .....+.+.+....+ .|.|+|++||+. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566677776666543 389999999995 3 444 4899999998863
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-16 Score=170.73 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=115.0
Q ss_pred CcceeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh---heEEEcCCccccccc
Q 001055 802 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK---ILGIIPQSPVLFSGT 877 (1171)
Q Consensus 802 ~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t 877 (1171)
+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 83 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK--- 83 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT---
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC---
Confidence 57888888 8999999999999999999999999999888889988876443 3333332 344444432111
Q ss_pred HHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcCC-
Q 001055 878 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAV- 954 (1171)
Q Consensus 878 v~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~L- 954 (1171)
++......... .. + ... ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 84 ---~~~~~~~~~~~--------------~~--~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 84 ---KLIIIDALMKE--------------KE--D----QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp ---TEEEEECCC--------------------C----TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred ---CEEEEeccccc--------------cC--c----eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 11111000000 00 0 001 12348999998888888888999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHc--CCcEEEEEecCh--------hhhhh-cCEEEEEeCc
Q 001055 955 -DVRTDALIQKTIREEF--KSCTMLIIAHRL--------NTIID-CDRILLLDSG 997 (1171)
Q Consensus 955 -D~~t~~~i~~~l~~~~--~~~tvi~vtH~~--------~~~~~-~d~i~vl~~G 997 (1171)
|+.....+.+.|+++. .++|+|+++|+. ..+.. ||+|++|+..
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888888764 479999999999 44666 9999999864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-18 Score=185.17 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=115.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHHhhheEEEcCCcccccccH
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 878 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 878 (1171)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589988888888888876 79999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH-HhccCCCEEEEecCCcCCCHH
Q 001055 879 RFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR-ALLRRSKILVLDEATAAVDVR 957 (1171)
Q Consensus 879 ~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr-all~~p~iLlLDEpTs~LD~~ 957 (1171)
..|+. . .+++++.++++.....- .+..|.|+++.... ++ .|| +++.+|++++|||||+++|.+
T Consensus 77 ~~n~~-g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNLY-G--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEEE-E--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCccC-C--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 99983 2 24667777765421100 00112233333211 12 566 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 958 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 958 t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
+++.|++.|.....+ +.++| +. ..||+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999998876543 35567 33 66999988764
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-16 Score=196.48 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=108.2
Q ss_pred cEEEEeeEEEe-----CCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRY-----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y-----~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+.+++...-. +.+...+++|++|++++|++++|+||||||||||++++.+..-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46776653322 11224799999999999999999999999999999999754211
Q ss_pred hhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
.+.-.++|++..-+ ++.+++. . ..++.+. +......+|+|++|+..++++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--~------------~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--T------------RMGAADN-----------IYKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--E------------EC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--H------------hCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-cc
Confidence 11112334332110 0011110 0 0111111 112235799999999999999 89
Q ss_pred CCCEEEEecCCcCCCHHHHHHHH-HHHHHHc--CCcEEEEEecChhhhhhcCEEEE-EeCcEEE
Q 001055 941 RSKILVLDEATAAVDVRTDALIQ-KTIREEF--KSCTMLIIAHRLNTIIDCDRILL-LDSGRVL 1000 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~-~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~v-l~~G~i~ 1000 (1171)
+|+++||||||+|+|+.....+. ..++.+. .++|+|++||+++....||+.-- +.++++.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 99999999999999999888776 5555542 48999999999988766665431 3444543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-16 Score=186.74 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=100.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|.++||+++|++. ++++|++|+| +|+|+||||||||+++|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 458999999999753 6999999998 99999999999999999999887666 2443332111 1124568
Q ss_pred EEEcCCcccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
++++|++.++ ..||.+|+.+.......+.++. +.+++.. .++.+.+||++|||+++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998776 4589988865322211111111 1222221 245567789999999999999
Q ss_pred ---EEEEecCC-cCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 944 ---ILVLDEAT-AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 944 ---iLlLDEpT-s~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+|++|||| .+||+.... + ++.+..+.++|+|.|..+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~-~---lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIE-F---MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHH-H---HHHHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHHH-H---HHHHhccCcEEEEEEcccCc
Confidence 99999999 699987742 2 33333578888888876654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-16 Score=178.17 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=99.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHH--hhheEEEcCCcccccc-cHHhhccCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL--RKILGIIPQSPVLFSG-TVRFNLDPF 885 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-tv~~nl~~~ 885 (1171)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.++.. |+.+|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999876542 222 4569999999877654 777776320
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcCCCHHHHHHHH
Q 001055 886 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQ 963 (1171)
Q Consensus 886 ~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~LD~~t~~~i~ 963 (1171)
.. .+.+..+-..+ |.... ....++..++||++||||+..+|+ +|.|| |+++.+ +.
T Consensus 181 -----------~~-~~~d~~llDt~-G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 181 -----------KA-RGYDLLFVDTA-GRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp -----------HH-HTCSEEEECCC-CCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred -----------Hh-CCCCEEEecCC-CCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 00 00000000001 11100 011245666999999999999999 55566 555543 33
Q ss_pred HHHHHHc--CCcEEEEEecChhh
Q 001055 964 KTIREEF--KSCTMLIIAHRLNT 984 (1171)
Q Consensus 964 ~~l~~~~--~~~tvi~vtH~~~~ 984 (1171)
+.+++.. .+.|+|++||+...
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 3333322 37899999998544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-17 Score=177.94 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=105.1
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc---cHHhhccCC-C
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG---TVRFNLDPF-S 886 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---tv~~nl~~~-~ 886 (1171)
.++|+++||+||||||||||+++|.|++.| .++|++|++.++.. |+++|+... .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999988743 676664321 1
Q ss_pred ---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH----HHHHHHHHHhccCCCEEEEecCCcC------
Q 001055 887 ---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ----RQLLSLSRALLRRSKILVLDEATAA------ 953 (1171)
Q Consensus 887 ---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq----kqrl~lArall~~p~iLlLDEpTs~------ 953 (1171)
....+.+.++++..++.+ .+...+..+|+|+ +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGL-----------PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTC-----------CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCC-----------CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 122344555554432221 2223355688886 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHc--CCcEEEEEecCh
Q 001055 954 -VDVRTDALIQKTIREEF--KSCTMLIIAHRL 982 (1171)
Q Consensus 954 -LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~ 982 (1171)
||+.++..+++.+.+.. .++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999887642 588999999984
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-17 Score=177.60 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=105.5
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCC---cccHHHHHhcCC--C--CCHHHHHH
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF---NATVRDNILFGS--A--FEPARYEK 260 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~---~~Tv~eni~~g~--~--~~~~~~~~ 260 (1171)
.++|++++|+||||||||||+++|+|.++| .++|++|++.++ ..|+++++.+.. + .+.+++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578999999999999999999999998865 589999999875 347888876532 1 23344555
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHH----HHHHHHHHHhccCCCEEEEeCcCCC-------CCHHHHHHHHH
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ----KQRVSMARAVYSNSDVFIFDDPLSA-------LDAHVGRQVFD 329 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq----rqRv~LAraL~~~~~vllLDEpts~-------LD~~~~~~l~~ 329 (1171)
.++..++.+. +...+..+|+|| +||+++||+++.+|+++++||||++ ||+.....+.+
T Consensus 73 ~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 73 HAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 5544332221 222346788886 5789999999999999999999999 99998888887
Q ss_pred HHHhh-ccCCCEEEEEcCCc
Q 001055 330 RCIRG-ELSGKTRVLVTNQL 348 (1171)
Q Consensus 330 ~l~~~-~~~~~tvi~vtH~~ 348 (1171)
.+.+. ..+|+|++.++|+.
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 66553 34588999999974
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-16 Score=180.81 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=81.9
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC-CCCCCCc--------cceecCcEEEEecCC
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE-LPPVSDA--------SAVIRGTVAYVPQVS 236 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~-~~~~~g~--------~~~~~~~i~~v~Q~~ 236 (1171)
.|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|. ..|++|. .......+++++|++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 47888885 357999999998 99999999999999999997 7777661 011123479999987
Q ss_pred CCC-cccHHHHHhcCCCCCH-HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeC
Q 001055 237 WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314 (1171)
Q Consensus 237 ~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 314 (1171)
.++ ..||+|++.++..... +.+....+. +.+..+ ....++|||||||+.+|||++ ++++||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 664 6799998877632211 111111111 111111 112479999999999999986 999999
Q ss_pred cCCC-CCHHHHHHHHHHHHhhccCCCEEEEEcCCcc
Q 001055 315 PLSA-LDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349 (1171)
Q Consensus 315 pts~-LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~ 349 (1171)
||++ ||+... .++..+. ...+.++|+.+||+.
T Consensus 136 Pt~~~Ld~~~~-~~l~~l~--~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV-AFMKAIH--NKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH-HHHHHHT--TTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH-HHHHHHH--hcCCEEEEEEeCCCC
Confidence 9986 999874 2323221 223678888999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-16 Score=166.51 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=86.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC--------------CCCcccHHHHHhcCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS--------------WIFNATVRDNILFGSA 252 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~--------------~l~~~Tv~eni~~g~~ 252 (1171)
.+++|++++|+||||||||||+++|+|.+.+..+... ..+.+-|+..+. .++..|+.||+.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 98 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG-LNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR- 98 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEE-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCC-CCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEe-
Confidence 6999999999999999999999999996554322110 122333443332 222223333332211
Q ss_pred CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH-HHHHHHHHHHhcc-------CCCEEEEeCcCCCCCHH--
Q 001055 253 FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVYS-------NSDVFIFDDPLSALDAH-- 322 (1171)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG-qrqRv~LAraL~~-------~~~vllLDEpts~LD~~-- 322 (1171)
..+++ +++.+..+++++. +|++++|||||+++|+.
T Consensus 99 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 99 -----------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred -----------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccC
Confidence 12333 3334555555555 89999999999999984
Q ss_pred -----H-----HHHHHHHHHhhcc-CCCEEEEEcCCcch----hhh-cCEEEEEeCC
Q 001055 323 -----V-----GRQVFDRCIRGEL-SGKTRVLVTNQLHF----LSQ-VDRIILVHEG 363 (1171)
Q Consensus 323 -----~-----~~~l~~~l~~~~~-~~~tvi~vtH~~~~----l~~-~d~i~~l~~G 363 (1171)
. .+.+++.+.+..+ .|.|+|+|||.... +.. +|+++.|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 2255555555433 48999999995544 665 6999999875
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-16 Score=164.73 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cH----Hhh
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV----RFN 881 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv----~~n 881 (1171)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..+..++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999988866432 235679999999988865 55 455
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
+.++... .|-.+++ ++.++..++++||| ||+.+...
T Consensus 87 ~~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 5432110 0000111 23344457999999 99999999
Q ss_pred HHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+.+.+. .+.||++++|+++.+.. |+ +..| .++++++..
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999876 57899999999999876 32 5556 567777654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-15 Score=190.35 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=106.7
Q ss_pred cEEEEeeEEEcCC--CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCccce-ecCcEEEEecCCC
Q 001055 162 AISIRNGYFSWDS--KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAV-IRGTVAYVPQVSW 237 (1171)
Q Consensus 162 ~i~~~~~s~~~~~--~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-~~g~~~~-~~~~i~~v~Q~~~ 237 (1171)
.|.+++..--.-. .+++.+++|++|+ ++|++++|+||||||||||||+++|...+ ..|.... .+..+++++|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~--- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR--- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH---
Confidence 4777765321100 0246799999999 99999999999999999999999997422 1221110 1123444444
Q ss_pred CC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 238 IF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 238 l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
+| ..++.||+..+ ..++|+|+++ ++.+...+.+|+++|||||+
T Consensus 653 i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 653 IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCC
T ss_pred HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCC
Confidence 33 33444444321 1246777764 44445568999999999999
Q ss_pred CCCCHHHHHHH-HHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 001055 317 SALDAHVGRQV-FDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368 (1171)
Q Consensus 317 s~LD~~~~~~l-~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 368 (1171)
+|+|+.....+ +..+..... .|.++|++||+.+....+|++..+.+|++...
T Consensus 697 ~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99888766655 343333333 48999999999988777787767777776543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-15 Score=175.30 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=98.5
Q ss_pred EeeEEEcCCCCCCCceeeeeE-------EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC
Q 001055 166 RNGYFSWDSKAERPTLLNINL-------DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl-------~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 238 (1171)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+.|+.. -.+ .+|.-
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i------~t~-ed~~e 163 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI------LTI-EDPIE 163 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE------EEE-ESSCC
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE------EEc-cCcHH
Confidence 4566776532 4567777776 7789999999999999999999999999988743322 111 11110
Q ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001055 239 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~ 318 (1171)
+ ..+.. .+. +. ...++.. .++-.+ +|||||..+||++++||||
T Consensus 164 ~----------~~~~~----------~~~---v~------q~~~~~~--~~~~~~----~La~aL~~~PdvillDEp~-- 206 (356)
T 3jvv_A 164 F----------VHESK----------KCL---VN------QREVHRD--TLGFSE----ALRSALREDPDIILVGEMR-- 206 (356)
T ss_dssp S----------CCCCS----------SSE---EE------EEEBTTT--BSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred h----------hhhcc----------ccc---ee------eeeeccc--cCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence 0 00000 000 00 0011111 123222 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCC
Q 001055 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 363 (1171)
Q Consensus 319 LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G 363 (1171)
|+++.+.+.+ ....|.++++++|+.+.+..+||++.|..|
T Consensus 207 -d~e~~~~~~~----~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 -DLETIRLALT----AAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp -SHHHHHHHHH----HHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred -CHHHHHHHHH----HHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 7777555443 334589999999999999888999888654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-15 Score=190.47 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=103.0
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cH
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV 878 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv 878 (1171)
..+++|++|+ ++|++++|+||||||||||+++|+|+..+ ..| ..+.. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCCH
Confidence 3689999999 99999999999999999999999997532 222 11111 1234555554 3322 34
Q ss_pred HhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHH
Q 001055 879 RFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958 (1171)
Q Consensus 879 ~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t 958 (1171)
.+|+.. + ...+|+|+++ ++.+...+.+|+++||||||+|+|+..
T Consensus 660 ~d~l~~---------------------------~--------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLAS---------------------------G--------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHh---------------------------h--------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 333311 1 1246776654 444555689999999999999998866
Q ss_pred HHHH-HHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 959 DALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 959 ~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
...+ ++.++.+. .++|+|++||+.+....||++..+.+|++....
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 5554 56666554 379999999999887778888778888876553
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=148.06 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=70.7
Q ss_pred CCCCChhHHHHHHHHHHhc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEe-
Q 001055 921 GENFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD- 995 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall----~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~- 995 (1171)
...||||||||++|||+|+ ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3569999999999999996 56799999999999999999999999999887889999999998888899999764
Q ss_pred -CcEE
Q 001055 996 -SGRV 999 (1171)
Q Consensus 996 -~G~i 999 (1171)
+|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 6654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-16 Score=182.33 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=113.7
Q ss_pred EEEeeEEE---eCCCCCCcc---------eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 788 KFEDVVLR---YRPELPPVL---------HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 788 ~~~~vs~~---y~~~~~~~l---------~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
+|++|+|+ |++...++| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 78899998 853112355 9999999999999999999999999999999999999999999974 344
Q ss_pred ChHHHhhheEEEc-CCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 856 GLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 856 ~~~~~r~~i~~v~-Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
.....++.+++++ |++.+ .++++..++-.|
T Consensus 215 ~~~~~~~~v~~v~~q~~~~-------------------------------------------------~~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE-------------------------------------------------EENAPVTAATLL 245 (361)
T ss_dssp CCTTCSSEEEEECC-----------------------------------------------------------CCHHHHH
T ss_pred CccccCCEEEEeecCcccc-------------------------------------------------ccccccCHHHHH
Confidence 4444677899998 66431 012223466777
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCC-cEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~-~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
+.++..+|+.+++|||+. ..+.+.|+.+..| .|++.++|..+....+||+..+..|.
T Consensus 246 ~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 RSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp HHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 888888999999999986 2344555554444 57899999987666699998887653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-15 Score=172.45 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=115.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~--v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+++++ +++|++. + |+++||++++|++ +||+||||||||||+++|+|+. ++|.++....+...++.+
T Consensus 17 l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 17 VPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred EEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 66667 7888643 5 9999999999999 9999999999999999999984 445555443444456689
Q ss_pred EEEcCCccccc-ccHHhhccCCCCCCHHHHHHH----HHHhcHHHHHHHc-------cCCcchh-------hhcCCCCCC
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEA----LERAHLKDAIRRN-------SLGLDAQ-------VSEAGENFS 925 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~~~~~~~i~~~----l~~~~~~~~i~~l-------p~gl~~~-------~~~~~~~LS 925 (1171)
+|++|++.++. .|+.+|+.+.........+.. ++ ..+.+++... +...++. +.+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999998774 599999976544333221111 11 1233334332 1112222 122334577
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHH-Hc-CCcEEEEEecC
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EF-KSCTMLIIAHR 981 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~-~~-~~~tvi~vtH~ 981 (1171)
-.+ +.++++|..+++|+++||||..|.+.....+.+.+++ +. .|.+|+.++.+
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 665 7999999999999999999999999888888888886 43 46788888864
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=154.12 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=106.7
Q ss_pred CCceeeeeE-EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHh-cCCCCCH
Q 001055 178 RPTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEP 255 (1171)
Q Consensus 178 ~~~l~~isl-~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~ 255 (1171)
-+.|+++.. .+++|++++|+||||||||||++.|++...+.+| .+.|+..+.. ...+.+.+. ++.....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-------PCIYVTTEES--RDSIIRQAKQFNWDFEE 79 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-------CEEEEESSSC--HHHHHHHHHHTTCCCGG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEcccC--HHHHHHHHHHhcchHHH
Confidence 457888888 8999999999999999999999999988765432 3555554421 111111111 1111000
Q ss_pred HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCC--CHHHHHHHHHHH
Q 001055 256 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL--DAHVGRQVFDRC 331 (1171)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~L--D~~~~~~l~~~l 331 (1171)
+.. ..+ ..++.......... .....|.++.++...+.+...+|+ ++++||||+.+ |+...+.+++.+
T Consensus 80 --~~~----~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 80 --YIE----KKL-IIIDALMKEKEDQW--SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp --GBT----TTE-EEEECCC----CTT--BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred --Hhh----CCE-EEEeccccccCcee--eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 000 000 00000000000000 012359999999888888888999 99999999888 998888888877
Q ss_pred Hhhc-cCCCEEEEEcCCc--------chhhh-cCEEEEEeCCE
Q 001055 332 IRGE-LSGKTRVLVTNQL--------HFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 332 ~~~~-~~~~tvi~vtH~~--------~~l~~-~d~i~~l~~G~ 364 (1171)
.+.. ..|.|+|+++|+. ..+.. ||+|++|++..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 6653 3589999999998 34554 79999998653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-15 Score=175.75 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=97.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC--cc------ceecCcEEEEe
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--AS------AVIRGTVAYVP 233 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g--~~------~~~~~~i~~v~ 233 (1171)
.|.++|++++|+ ++++++|+||+| +|+|+||||||||+++|+|...|..| +. ......+++++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 588999999996 357999999998 99999999999999999999875433 11 11123489999
Q ss_pred cCCCCC-cccHHHHHhcCCCCCHH-HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC---
Q 001055 234 QVSWIF-NATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--- 308 (1171)
Q Consensus 234 Q~~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--- 308 (1171)
|++.++ ..||.||+.++...+.. .+..+. +.++ ..++.+++||++|||+++.+|+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~------~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI------DYID--------------SKFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHH------HHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHH------HHHH--------------HHHHHHHHHHHHHHHHhccCCCeeE
Confidence 988775 78999999887532211 111111 1111 1466778889999999999999
Q ss_pred EEEEeCcC-CCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 309 VFIFDDPL-SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 309 vllLDEpt-s~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
++++|||| ++||+....++ +.+. .+.++|+|.|..+.+
T Consensus 142 lL~ldePt~~~L~~~d~~~l-k~L~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFM-KRLH----EKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHH-HHHT----TTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHHHHH-HHHh----ccCcEEEEEEcccCc
Confidence 99999999 69999875444 3332 357888888765543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.9e-15 Score=172.01 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=113.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCE--EEEEcCCCccHHHHHHHHhcCCC---CCCC-ccceecCcEEEEecC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELP---PVSD-ASAVIRGTVAYVPQV 235 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~--v~lvG~nGsGKSTLl~~l~G~~~---~~~g-~~~~~~~~i~~v~Q~ 235 (1171)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|..- +... .....+..++|++|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec
Confidence 356666 778853 45 9999999999999 99999999999999999999841 1100 111123369999999
Q ss_pred CCCC-cccHHHHHhcCCCCCHHH-HH-----------HHHHHc-CchHHHhcCCCCC----ccccCCCCCccChHHHHHH
Q 001055 236 SWIF-NATVRDNILFGSAFEPAR-YE-----------KAIDVT-SLQHDLDLLPGGD----VTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 236 ~~l~-~~Tv~eni~~g~~~~~~~-~~-----------~~~~~~-~l~~~~~~~~~~~----~~~i~~~g~~LSGGqrqRv 297 (1171)
+.++ ..||.||+.+|...+... +. +.++.. +..+.+...++.. .-.+-+.+..|+-.. +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 9876 789999999986544211 11 111111 1110000111111 111234445677776 8
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh-hccCCCEEEEEcCC
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 347 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~-~~~~~~tvi~vtH~ 347 (1171)
.++++|..+++|+++|+|+..|.+.....+++.+.+ ....|.+++.++.+
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999988888887765 55568888888853
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-15 Score=174.58 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=97.1
Q ss_pred Cceeee-eEEecCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCC---cc-cee-------cCcEEEEecCCCCCcccHH
Q 001055 179 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSD---AS-AVI-------RGTVAYVPQVSWIFNATVR 244 (1171)
Q Consensus 179 ~~l~~i-sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~--~~~~g---~~-~~~-------~~~i~~v~Q~~~l~~~Tv~ 244 (1171)
+.|+.+ ++.+++|++++|+||||||||||++.++|.. +|+.| +. ..+ +.++++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 457765 7899999999999999999999999999998 66664 21 111 1123444444443333444
Q ss_pred HHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc-------cCCCEEEEeCcCC
Q 001055 245 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-------SNSDVFIFDDPLS 317 (1171)
Q Consensus 245 eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~-------~~~~vllLDEpts 317 (1171)
+||.+.... -|++|+|++.++++++ .+|+++|+||||+
T Consensus 198 ~ni~~~~~~-----------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAF-----------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECC-----------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecC-----------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 444432111 1467788888888887 6899999999999
Q ss_pred CCCHHH------------HHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 001055 318 ALDAHV------------GRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 318 ~LD~~~------------~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 370 (1171)
++|+.. .+.+...+.+.. ..+.|+|+++|.....+. .+.......|++.+.+.
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999862 244444444433 348999999998765442 23344555566554433
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-16 Score=165.48 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=91.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCccceec-----CcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAVIR-----GTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~-----~~~~g~~~~~~-----~~i~~ 231 (1171)
.|+++|++|.|+ .+++++ |.+++|.+++|+|+||||||||++.|+|.. .|+.|...... +.+-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 378999999995 257887 999999999999999999999999999988 67666543211 11111
Q ss_pred EecCCCC------------CcccHHHHHh---------c----CCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCC
Q 001055 232 VPQVSWI------------FNATVRDNIL---------F----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286 (1171)
Q Consensus 232 v~Q~~~l------------~~~Tv~eni~---------~----g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g 286 (1171)
+ ..|-. +...+..-+. + ....... ..+..++ +... +...-.++...
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~------~~~~-~~~~~~v~nK~ 147 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEW------AVDS-NIAVLVLLTKA 147 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHH------HHHT-TCCEEEEEECG
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHH------HHHc-CCCeEEEEecc
Confidence 1 11110 0000111110 0 0001111 1111111 1111 11111245666
Q ss_pred CccChHHHHH-HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC
Q 001055 287 VNISGGQKQR-VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 287 ~~LSGGqrqR-v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
..+|+||||| +..+++++.+|+++++|||||++|+.....+++.+.+...++
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 7899999999 899999999999999999999999999999998876654334
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-15 Score=188.40 Aligned_cols=176 Identities=21% Similarity=0.268 Sum_probs=105.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeee----------eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCccce------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNI----------NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAV------ 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~i----------sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-~~g~~~~------ 224 (1171)
.+.++|+++.|+.. .+++|+.+ +++++. +||+||||||||||+++|+|+..| ++|.+..
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999632 24455544 366665 999999999999999999999988 6765421
Q ss_pred ---------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 ---------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 ---------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+++.++|++|++.++ ..||++||.++. ... .... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------~~~---------~~~~-----------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------NAI---------AGEG-----------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------HHH---------HCSS-----------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------HHh---------cCCc-----------cccc---h
Confidence 234689999999886 579999996420 000 0000 0111 1
Q ss_pred HHHHHHHHhccCCCEEEEeCc------CCCCCHHHHHHHHHHHHhhcc--CCCEEEEEcCCcchh--------hh-----
Q 001055 295 QRVSMARAVYSNSDVFIFDDP------LSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFL--------SQ----- 353 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEp------ts~LD~~~~~~l~~~l~~~~~--~~~tvi~vtH~~~~l--------~~----- 353 (1171)
+++.++.+....|+++++||| |++||+...+.+.+.+..... .+.+++++||+.+.. +.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 233344444568999999999 999999999999887666432 367788999998743 12
Q ss_pred cCEEEEEeCCEEEEecChh
Q 001055 354 VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 354 ~d~i~~l~~G~i~~~g~~~ 372 (1171)
...|.++.++.++..|+.+
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp CSEEEEEECGGGSSSSSTT
T ss_pred CceEEEecchhhcCcccHH
Confidence 2557888887766665543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-14 Score=156.74 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=95.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhcc-CCCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEH 888 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~-~~~~~ 888 (1171)
.+++|++++|+||||||||||++.+++.+. .|.+. .|.+... +..+.|++.+... ..+...+. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 478999999999999999999999998664 56663 3443211 2346666655322 11111111 00011
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc--CCCHHHH---HHHH
Q 001055 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTD---ALIQ 963 (1171)
Q Consensus 889 ~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs--~LD~~t~---~~i~ 963 (1171)
......+. ++.+ ++....+.....||+||+|++ ++++++|+++||||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~---------~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAV---------ADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHH---------HHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred Chhhhhhc---------cCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 12222222 2222 223333456678999998765 68889999999999999 9997544 6677
Q ss_pred HHHHHHc--CCcEEEEEecChhhh
Q 001055 964 KTIREEF--KSCTMLIIAHRLNTI 985 (1171)
Q Consensus 964 ~~l~~~~--~~~tvi~vtH~~~~~ 985 (1171)
+.|.++. .++|||+++|+....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777764 389999999998654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=140.87 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=67.7
Q ss_pred CCccChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE-
Q 001055 286 GVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV- 360 (1171)
Q Consensus 286 g~~LSGGqrqRv~LAraL~----~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l- 360 (1171)
...||||||||++|||+|+ .+|+++||||||++||+..++.+.+.+.+.. ++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHHhCCEEEEEE
Confidence 4689999999999999996 5579999999999999999999998765543 457899999998888889999865
Q ss_pred -eCCEE
Q 001055 361 -HEGMV 365 (1171)
Q Consensus 361 -~~G~i 365 (1171)
.+|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 46653
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=145.92 Aligned_cols=149 Identities=18% Similarity=0.119 Sum_probs=96.4
Q ss_pred CcceeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 802 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 802 ~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------
Confidence 45677665 789999999999999999999999999 4444445544321 111111111
Q ss_pred hccCCCCCCHHHHHHHHHHhcH--HHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhccC-CCEEEEecCCcCCC
Q 001055 881 NLDPFSEHSDADLWEALERAHL--KDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALLRR-SKILVLDEATAAVD 955 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~--~~~i~~lp~gl~~~~~~~~~~LSgG--qkqrl~lArall~~-p~iLlLDEpTs~LD 955 (1171)
.++..++ .++.+.+. ...+|++ ++|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ---------------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 ---------------MAETRGLNPEEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp ---------------HHHTTTCCHHHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred ---------------HHHhcCCChHHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 1110000 11111111 1134455 36789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CcEEEEEecChh-------------hhhh-cCEEEEEeCc
Q 001055 956 VRTD--------ALIQKTIREEFK--SCTMLIIAHRLN-------------TIID-CDRILLLDSG 997 (1171)
Q Consensus 956 ~~t~--------~~i~~~l~~~~~--~~tvi~vtH~~~-------------~~~~-~d~i~vl~~G 997 (1171)
+... ..+.+.|+++.+ ++|+|+++|... .+.. ||+|++|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 334444655443 789999999876 3444 9999999754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-14 Score=166.17 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=108.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC--------CCCCceEEECCEecCCCC---------------hHHHhhheEEE---c
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV--------ELERGRILIDGFDIAKFG---------------LMDLRKILGII---P 868 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 868 (1171)
++++|+|+||||||||++.|+|.. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 889999999999987653 34577789888 7
Q ss_pred CCccc-ccccHHhhccCCCCCCHHHHHHHH-------HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 869 QSPVL-FSGTVRFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 869 Q~~~l-f~~tv~~nl~~~~~~~~~~i~~~l-------~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|++.+ |+.++.||..... ...+.+.+ ....+...+... +........ .+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~v--d~~~~~~~~-~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALV--DAVHADEQM-NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEE--ETTTHHHHH-HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEE--EHHHHHHHH-hhchHHHHHHHhCCEEEEE
Confidence 88764 5679999986542 22222221 000010000000 111111111 1589999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+|+++ ||| +.+.+.|++..++.||+++||+...+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 99987 998 67788888877789999999974433
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-15 Score=158.24 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=89.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS 889 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~ 889 (1171)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++..... .++.++|++|++. ...|+.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 788999999876532211 1234678888754 334677666321
Q ss_pred HHHHHHHHHHhcHHHHHHHc--cCCcchhh--hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHH
Q 001055 890 DADLWEALERAHLKDAIRRN--SLGLDAQV--SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965 (1171)
Q Consensus 890 ~~~i~~~l~~~~~~~~i~~l--p~gl~~~~--~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~ 965 (1171)
.. .....+....++.. +.+++... +.....+|+|++|+++++|++.++|+++ +|+...+.+++.
T Consensus 76 -~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG---RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH---HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH---HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 00000000000000 01111111 2233569999999999999999999876 588877777777
Q ss_pred HHHH
Q 001055 966 IREE 969 (1171)
Q Consensus 966 l~~~ 969 (1171)
+..+
T Consensus 144 ~~~l 147 (191)
T 1zp6_A 144 FADL 147 (191)
T ss_dssp TTCC
T ss_pred Hhcc
Confidence 6543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-13 Score=153.13 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=93.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc-----eecCcEEEEecCCCCCcccHHHHHh-cCCCCCHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-----VIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEK 260 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~-----~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~ 260 (1171)
.+++|++++|+||||||||||++.+++.... |... ..++.+.|+..+... ..+.+.+. ++..........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 5889999999999999999999999986542 3211 113457887766432 12222221 222233333223
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC--CCCHHHH---HHHHHHHHhhc
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS--ALDAHVG---RQVFDRCIRGE 335 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts--~LD~~~~---~~l~~~l~~~~ 335 (1171)
.++...+. + ..+.....||+||++++ ++++.+|+++++||||+ ++|+... ..+.+.+....
T Consensus 102 ~~~~l~l~------~-----~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQ------P-----LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEEC------C-----CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEe------e-----cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 33332221 1 12344568999998765 68888999999999999 9998433 66666665553
Q ss_pred -cCCCEEEEEcCCcchh
Q 001055 336 -LSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 336 -~~~~tvi~vtH~~~~l 351 (1171)
..|+|+|+++|+....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 3489999999998654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-16 Score=183.91 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=125.0
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCccce--------ecCcEEEEec-----CCCCCcccHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAV--------IRGTVAYVPQ-----VSWIFNATVR 244 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~~--------~~~~i~~v~Q-----~~~l~~~Tv~ 244 (1171)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|.+.. .+..++|++| ++..|..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566665 8999999999999999999999999999887 665422 3456899999 7777899999
Q ss_pred HHHhcCCCC-------CHHHHHHHHHHcCch-----------------HHHhc------------CCCCCccccCCCCCc
Q 001055 245 DNILFGSAF-------EPARYEKAIDVTSLQ-----------------HDLDL------------LPGGDVTEIGERGVN 288 (1171)
Q Consensus 245 eni~~g~~~-------~~~~~~~~~~~~~l~-----------------~~~~~------------~~~~~~~~i~~~g~~ 288 (1171)
+|+....+. +.+.+..+++.+... +.+.. ++.+..+.+++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999876433 566665555544321 11111 233455667777778
Q ss_pred cChHHHHHHHHHHHhccCCCE--EEEeCcCCCCCHHH---H-----HHHHHHHHhhccCCCEEEEEcCCcch
Q 001055 289 ISGGQKQRVSMARAVYSNSDV--FIFDDPLSALDAHV---G-----RQVFDRCIRGELSGKTRVLVTNQLHF 350 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~v--llLDEpts~LD~~~---~-----~~l~~~l~~~~~~~~tvi~vtH~~~~ 350 (1171)
+||| ||+++|++++.+|++ +|+||+|+.||... . +.+.+..+....+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 8999 889999999999999 99999999999651 1 23444555556678999989998763
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-16 Score=182.26 Aligned_cols=141 Identities=16% Similarity=0.037 Sum_probs=93.0
Q ss_pred ceeeeeEEecC--CCEEEEEcCCCccHHHHHHHHhcCCCCCC----Ccccee---c-----------CcEEEEecCCCCC
Q 001055 180 TLLNINLDIPV--GSLVAIVGGTGEGKTSLISAMLGELPPVS----DASAVI---R-----------GTVAYVPQVSWIF 239 (1171)
Q Consensus 180 ~l~~isl~i~~--Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~----g~~~~~---~-----------~~i~~v~Q~~~l~ 239 (1171)
..+.|+++|++ |++++|+|+||||||||+++|+|.++|++ |.+... . ..|++++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999987 543220 0 1255555555555
Q ss_pred cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc-cCCCEEEEeC---c
Q 001055 240 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-SNSDVFIFDD---P 315 (1171)
Q Consensus 240 ~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~-~~~~vllLDE---p 315 (1171)
..|++|||.++....... ....+|+|++||..+++++. .+|++++||| |
T Consensus 237 ~~t~~~nl~~~~~~~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p 289 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITT---------------------------QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTE 289 (365)
T ss_dssp HHHHCSSEEEESSCHHHH---------------------------HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC
T ss_pred HHhccCCEEEEeCCchHH---------------------------HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCC
Confidence 566666665542110000 01135566677777777764 5888888888 5
Q ss_pred C------CCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCC
Q 001055 316 L------SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQ 347 (1171)
Q Consensus 316 t------s~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~ 347 (1171)
+ .++|+..+..+.+.+.+.. ..+.++|+++|.
T Consensus 290 ~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 290 WVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp -----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred cccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5 5788888888877664432 236788888875
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-13 Score=147.95 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=87.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc--CCCC-----CCceEEECCEecCC-CChHHHhhheEEEcCCcccccccHHhh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR--IVEL-----ERGRILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g--~~~p-----~~G~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
.+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5655 57889998765211 0112234445655443 3444
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCHH--
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVR-- 957 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~~-- 957 (1171)
+......+.++..+. +.-++.++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 433222222221111 11111222 589999999999999985
Q ss_pred -----H-----HHHHHHHHHHHc--CCcEEEEEecChhhh-------------------h-hcCEEEEEeCc
Q 001055 958 -----T-----DALIQKTIREEF--KSCTMLIIAHRLNTI-------------------I-DCDRILLLDSG 997 (1171)
Q Consensus 958 -----t-----~~~i~~~l~~~~--~~~tvi~vtH~~~~~-------------------~-~~d~i~vl~~G 997 (1171)
+ ...+...|.+.. .++|||+++|..... . .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 223444444433 379999999965432 2 38999999865
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-14 Score=158.34 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=90.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCCCC-cccHHHHHhcC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNILFG 250 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni~~g 250 (1171)
+|++++|+||||||||||+++|+|.++|++|.+... +..++|++|++.++ ..|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999987654221 12489999998775 56899998643
Q ss_pred CCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCCCHHHHHHHH
Q 001055 251 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVF 328 (1171)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~LD~~~~~~l~ 328 (1171)
. ...+.. ..++ .++... .....++..++||++||||+..+|+ ++.|| |+++.+. .
T Consensus 181 ~----------~~~~d~-~llD-t~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~------~ 237 (304)
T 1rj9_A 181 K----------ARGYDL-LFVD-TAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG------L 237 (304)
T ss_dssp H----------HHTCSE-EEEC-CCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH------H
T ss_pred H----------hCCCCE-EEec-CCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH------H
Confidence 1 000100 0011 111110 1112356667999999999999999 55666 5555443 3
Q ss_pred HHHHhhcc-CCCEEEEEcCCcch
Q 001055 329 DRCIRGEL-SGKTRVLVTNQLHF 350 (1171)
Q Consensus 329 ~~l~~~~~-~~~tvi~vtH~~~~ 350 (1171)
+.+..... .+.|+|++||+...
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 32322222 36899999998543
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-15 Score=166.17 Aligned_cols=128 Identities=11% Similarity=0.037 Sum_probs=90.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC----C
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE----H 888 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~ 888 (1171)
++.++||+|++|||||||++.|.+++.+. |. -++.+.+|+||+++|+.++++|+.+... .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~---------------~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG---------------GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG---------------GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC---------------CCceEEEeccccccCChHHHHHHhccccccchh
Confidence 47799999999999999999999999874 20 1345666699999999999988742100 0
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchh------hhcCCCCCChhHHHHHHHH--HHhccCCCEEEEecCCcCCCHHH
Q 001055 889 SDADLWEALERAHLKDAIRRNSLGLDAQ------VSEAGENFSVGQRQLLSLS--RALLRRSKILVLDEATAAVDVRT 958 (1171)
Q Consensus 889 ~~~~i~~~l~~~~~~~~i~~lp~gl~~~------~~~~~~~LSgGqkqrl~lA--rall~~p~iLlLDEpTs~LD~~t 958 (1171)
.....-++.....+.+++..++.|++|. +...+.++||||+||+++| +++ +|+|||+||||+++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001112345677888889997653 3345678999999999998 555 899999999999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.8e-15 Score=166.93 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCH----HHHHHHHHHc
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP----ARYEKAIDVT 265 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~----~~~~~~~~~~ 265 (1171)
++.+++|+|++|||||||.+.|.+.+++. |.. +..+.+|+|++.+++.++++|+.++.+... .....+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 45799999999999999999999998763 211 334666699999999999999976421000 0000111122
Q ss_pred CchHHHhcCCCCCcc------ccCCCCCccChHHHHHHHHH--HHhccCCCEEEEeCcCCCCCHHH
Q 001055 266 SLQHDLDLLPGGDVT------EIGERGVNISGGQKQRVSMA--RAVYSNSDVFIFDDPLSALDAHV 323 (1171)
Q Consensus 266 ~l~~~~~~~~~~~~~------~i~~~g~~LSGGqrqRv~LA--raL~~~~~vllLDEpts~LD~~~ 323 (1171)
.+.+.+..++.|.+| .+...+..+||||+||+++| +++ +|+|+|+||||+++|+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 334455555665332 34555679999999999998 555 999999999999999863
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.7e-13 Score=162.79 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCcc-ChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 286 GVNI-SGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 286 g~~L-SGGqrqRv~LAraL~~~~--~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
...| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.+..... |+|||+|||+++.+..||++++|++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKVEK 472 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEEEC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 3567 999999999999999999 99999999999999999999998776654 8999999999999888999999976
Q ss_pred CE
Q 001055 363 GM 364 (1171)
Q Consensus 363 G~ 364 (1171)
+.
T Consensus 473 ~~ 474 (517)
T 4ad8_A 473 QV 474 (517)
T ss_dssp CE
T ss_pred cc
Confidence 53
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-15 Score=160.69 Aligned_cols=170 Identities=17% Similarity=0.062 Sum_probs=105.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc-cccHHhhccCCCCCCHHH
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDAD 892 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~~nl~~~~~~~~~~ 892 (1171)
|++++|+||||||||||+++|++ |.+|.+.++|.++... ..+++++|....+ ..++.+|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999987 6789999998655321 2356777765333 23565555321
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCC--ChhHHHHHHHHH------HhccCCCEEEEecCCcCCCHHHHHHHHH
Q 001055 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENF--SVGQRQLLSLSR------ALLRRSKILVLDEATAAVDVRTDALIQK 964 (1171)
Q Consensus 893 i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L--SgGqkqrl~lAr------all~~p~iLlLDEpTs~LD~~t~~~i~~ 964 (1171)
....+. .+....++.. .+ ....+....+ |+|++|++.++. +++++|+...+|+ ++|+...+. ++
T Consensus 66 ~~~~~~-~~~~~ild~~-~~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 66 TVNFLL-AQNDVVLDYI-AF--PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp HHHHHH-TTCEEEEESC-CC--HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred HHHHHh-cCCcEEEeec-cC--HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 000000 0000000000 00 0000000124 888888888887 8888888888884 899988888 88
Q ss_pred HHHHHcC-CcEEEEEecC-hhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 965 TIREEFK-SCTMLIIAHR-LNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 965 ~l~~~~~-~~tvi~vtH~-~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
.+..... +.++|.+||. +++++. ||+|+ ++|+++..|+++-|-
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 8877643 5799999999 999987 99999 999999999887653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-15 Score=154.50 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=75.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCC---CCccce---------------ec-CcEE----EEecCCCCCcccHHHHHh
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPV---SDASAV---------------IR-GTVA----YVPQVSWIFNATVRDNIL 248 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~---~g~~~~---------------~~-~~i~----~v~Q~~~l~~~Tv~eni~ 248 (1171)
++++|+|+||||||||+++|+|+++|+ .|.+.. ++ ..+| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999886 342211 11 1355 788887766 111
Q ss_pred cCCCCCHHHHHHHHHHcCchHHHhc-CCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 249 FGSAFEPARYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 249 ~g~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
.+.+ . .+++.+.+.. +| +++|.++|+ |||||||||+||||++++|+++
T Consensus 77 ----~~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1111 1 5678888888 88 899999985 9999999999999999998874
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-15 Score=172.79 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=116.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHHhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRK 862 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~ 862 (1171)
++++++++.|+.. .+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.++..... ...|.
T Consensus 30 ie~~~~~~~~~~~--~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAVR--DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHHH--HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccChH--HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445677778543 58999999999999999999999999999999999999999999999998854321 23577
Q ss_pred heEEEcCCcccccc----------c---HHhhc--------c------CCCCCCHHHHHHHHHH-------------hcH
Q 001055 863 ILGIIPQSPVLFSG----------T---VRFNL--------D------PFSEHSDADLWEALER-------------AHL 902 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~----------t---v~~nl--------~------~~~~~~~~~i~~~l~~-------------~~~ 902 (1171)
++++++|++.+|.. | +++.+ + ++-..++..+.+.+.. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999987741 1 11110 0 0000011111000000 000
Q ss_pred HHHHHHccCCcc-hhhhc-CCCCCChhHHHHHHHHHHhcc------CCCEEEEecCCcCCCHHHHHHHHHHHHHH
Q 001055 903 KDAIRRNSLGLD-AQVSE-AGENFSVGQRQLLSLSRALLR------RSKILVLDEATAAVDVRTDALIQKTIREE 969 (1171)
Q Consensus 903 ~~~i~~lp~gl~-~~~~~-~~~~LSgGqkqrl~lArall~------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~ 969 (1171)
...+...|.-+- ..++. ....+|+|++|++..|++++. +|+++. ||++|......+++.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111111100 11111 113478999999999999998 688876 9999999999999999874
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-14 Score=149.81 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=89.0
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCcccee--------cCcEEEEecCCCCCc-ccH----HHHHhc
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVI--------RGTVAYVPQVSWIFN-ATV----RDNILF 249 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~~--------~~~i~~v~Q~~~l~~-~Tv----~eni~~ 249 (1171)
.-..++|++++|+||||||||||+++|+|.++| ..|.+... +..++|++|++.+|. .++ .||+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 346789999999999999999999999999986 34433221 124889999876653 344 333332
Q ss_pred CCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH
Q 001055 250 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329 (1171)
Q Consensus 250 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~ 329 (1171)
.. .+.|-.+++ ++.++..++++||| ||+.+.+.+.+
T Consensus 90 ~~------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 90 FG------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp TT------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred Hh------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHH
Confidence 10 011111221 33444557999999 99999999987
Q ss_pred HHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 001055 330 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 330 ~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
.+. ++.|++++||+++.+.. |+ +.+| .++.+++.
T Consensus 126 ~l~----~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 126 KMP----HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HCT----TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred Hcc----CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 543 47899999999998865 32 5666 46666654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-12 Score=138.30 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=97.9
Q ss_pred CceeeeeE-EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001055 179 PTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 257 (1171)
Q Consensus 179 ~~l~~isl-~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 257 (1171)
+.|+++.. .+++|++++|+||||||||||++.+++ ++ .+.+.|+..+..+....+.+.... ...+.+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--------~~~v~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 75 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--------GKKVAYVDTEGGFSPERLVQMAET-RGLNPEE 75 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--------CSEEEEEESSCCCCHHHHHHHHHT-TTCCHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--------CCcEEEEECCCCCCHHHHHHHHHh-cCCChHH
Confidence 45777765 799999999999999999999999999 21 134667766553222222222110 0011111
Q ss_pred HHHHHHHcCchHHHhcCCCCCccccCCCCCccChH--HHHHHHHHHHhccC-CCEEEEeCcCCCCCHHH--------HHH
Q 001055 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYSN-SDVFIFDDPLSALDAHV--------GRQ 326 (1171)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG--qrqRv~LAraL~~~-~~vllLDEpts~LD~~~--------~~~ 326 (1171)
..+.+. + ..+|++ |+++++.+++++.+ |+++++||||+.+|+.. ...
T Consensus 76 ------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~ 133 (220)
T 2cvh_A 76 ------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSR 133 (220)
T ss_dssp ------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHH
T ss_pred ------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHH
Confidence 111100 0 134444 46789999999986 99999999999999742 233
Q ss_pred HHHHHHhhcc-CCCEEEEEcCCcc-------------hhh-hcCEEEEEeCC
Q 001055 327 VFDRCIRGEL-SGKTRVLVTNQLH-------------FLS-QVDRIILVHEG 363 (1171)
Q Consensus 327 l~~~l~~~~~-~~~tvi~vtH~~~-------------~l~-~~d~i~~l~~G 363 (1171)
+.+.+.+..+ .+.|+|+++|... .+. .||++++|++.
T Consensus 134 ~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 134 QLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 4444444333 3789999999865 333 47999999754
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-15 Score=149.36 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=71.5
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEc
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 868 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 868 (1171)
.++++++|+.. .+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 10 ~~~~~~~~g~~--~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 10 DEFSMLRFGKK--FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp SHHHHHHHHHH--HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred CHHHHHHHHHH--HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 34567777543 6899999999999999999999999999999999999 9999999999877421 1112 2799
Q ss_pred CCcccccccHHhhcc
Q 001055 869 QSPVLFSGTVRFNLD 883 (1171)
Q Consensus 869 Q~~~lf~~tv~~nl~ 883 (1171)
|++.+|..|+.+|+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999888668888874
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.3e-15 Score=157.55 Aligned_cols=145 Identities=11% Similarity=0.131 Sum_probs=95.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCH
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 890 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~ 890 (1171)
.++|+++||+||||||||||+++|.|+++|+ | ..+++|+++...+..+..+|+..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~-- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRK-- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccC--
Confidence 4789999999999999999999999999975 4 135667777666655555554211100
Q ss_pred HHHHHHHHHhcHHHHHHHccCC--cchhhhcCCCCCChhHHHHHHHH-HHhccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 001055 891 ADLWEALERAHLKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLS-RALLRRSKILVLDEATAAVDVRTDALIQKTIR 967 (1171)
Q Consensus 891 ~~i~~~l~~~~~~~~i~~lp~g--l~~~~~~~~~~LSgGqkqrl~lA-rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~ 967 (1171)
.+..+.....+.+++..++.+ ++....+.+..+|+||+||+++| ++++.++.++++|||.. ..+.
T Consensus 78 -~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 78 -GAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp -TSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred -CCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 000001112223334444333 55666777888999999999998 99999999988999852 1122
Q ss_pred HHcCCcEEEEEecChhh-hhh-cCE
Q 001055 968 EEFKSCTMLIIAHRLNT-IID-CDR 990 (1171)
Q Consensus 968 ~~~~~~tvi~vtH~~~~-~~~-~d~ 990 (1171)
.. -..++++.+..+. +.+ +.|
T Consensus 146 ~~--~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 146 AI--WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GT--CSEEEEECCCHHHHHHHHHHH
T ss_pred Hh--cCEEEEEeCCHHHHHHHHHHH
Confidence 21 2468888888876 333 555
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-12 Score=152.72 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=99.6
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHH--HhhheEEEcCCccccc-c
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMD--LRKILGIIPQSPVLFS-G 876 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 876 (1171)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|+.... ... .|+.|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35788899999999999999999999999999999999999999988775431 112 3677999999987653 4
Q ss_pred cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCC-----CCChhHHHHHHHHHHhcc-CC-CEEEEe
Q 001055 877 TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGE-----NFSVGQRQLLSLSRALLR-RS-KILVLD 948 (1171)
Q Consensus 877 tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~-----~LSgGqkqrl~lArall~-~p-~iLlLD 948 (1171)
|+++|+.+.. . .++|-.+ +..|. .+-.--+|++.++|++.. .| .+||..
T Consensus 363 tV~e~l~~a~------------~-----------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 363 VIFDAIQAAK------------A-----------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHH------------H-----------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHH------------h-----------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 7888774310 0 0111111 11110 011122478888887754 46 455555
Q ss_pred cCCcCCCHHHHHHHHHHHHHHcCCcEEEEEec
Q 001055 949 EATAAVDVRTDALIQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 949 EpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH 980 (1171)
.||+|.|.... .+.+.+. .+.|.+++||
T Consensus 420 DattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred cCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 58888655422 2222221 3678999999
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-13 Score=158.16 Aligned_cols=206 Identities=9% Similarity=0.018 Sum_probs=125.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC---CCCCCcE---------EE
Q 001055 98 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPL---TSGLPAI---------SI 165 (1171)
Q Consensus 98 ~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~i---------~~ 165 (1171)
+.++.+.+..++.++..+..| .+......+..+..+..|++.++ ++......+.. ......+ .+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~f 138 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTLEDYAQQGFF 138 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCHHHHHhcCCc
Confidence 678998888877776655444 11111112222233445666665 11100000000 0001124 67
Q ss_pred EeeEEE---cCCCCCCCce---------eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------
Q 001055 166 RNGYFS---WDSKAERPTL---------LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------- 224 (1171)
Q Consensus 166 ~~~s~~---~~~~~~~~~l---------~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------- 224 (1171)
++++|+ |+.. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.+..
T Consensus 139 ~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~ 217 (361)
T 2gza_A 139 KHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP 217 (361)
T ss_dssp SCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT
T ss_pred Cccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc
Confidence 888888 7521 23455 9999999999999999999999999999999999998765422
Q ss_pred -ecCcEEEEe-cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 225 -IRGTVAYVP-QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 225 -~~~~i~~v~-Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
.+..++|++ |++.+ .++++..+|-.|+.+
T Consensus 218 ~~~~~v~~v~~q~~~~-------------------------------------------------~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 218 DHPNHVHLFYPSEAKE-------------------------------------------------EENAPVTAATLLRSC 248 (361)
T ss_dssp TCSSEEEEECC-----------------------------------------------------------CCHHHHHHHH
T ss_pred ccCCEEEEeecCcccc-------------------------------------------------ccccccCHHHHHHHH
Confidence 122344444 33210 123445678888889
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+..+|+.+++|||.. .+. ++.+........|++.++|..+....+||+..+..|.
T Consensus 249 l~~~pd~~l~~e~r~---~~~----~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 249 LRMKPTRILLAELRG---GEA----YDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp TTSCCSEEEESCCCS---THH----HHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HhcCCCEEEEcCchH---HHH----HHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999986 222 2322222223457899999987666679998887653
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.3e-12 Score=146.75 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=80.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhc-CCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc-cccHHhhccCCCCCCHHH
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFR-IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDAD 892 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~~nl~~~~~~~~~~ 892 (1171)
..+.|.||+|+||||++++|+| ++.|+.|.+.++|.++.... ..+..+++++|.+.+. +.+- ........
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 108 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIV 108 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHH
Confidence 3489999999999999999999 88999999999998765422 2367799999987642 1110 00011112
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCC
Q 001055 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972 (1171)
Q Consensus 893 i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~ 972 (1171)
+.+.++. +... .+++... .||| +..+|+|+|||||++ ||+.+...+.+.|.+...+
T Consensus 109 ~~~~i~~-----~~~~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQM--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTT--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHh--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 2222222 1111 1121111 4676 778999999999999 9999999999999987667
Q ss_pred cEEEEEecChhhh
Q 001055 973 CTMLIIAHRLNTI 985 (1171)
Q Consensus 973 ~tvi~vtH~~~~~ 985 (1171)
+++|++||+.+.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.8e-14 Score=170.66 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=115.8
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccc-ccHHh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRF 880 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~ 880 (1171)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -+..+++++|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999999999999986522221 1344677776654111 14444
Q ss_pred hcc----------CCCCCCHHHHHHHHHHhc-------------HHHHHHHcc---CCcchhhh-------cCCCCCChh
Q 001055 881 NLD----------PFSEHSDADLWEALERAH-------------LKDAIRRNS---LGLDAQVS-------EAGENFSVG 927 (1171)
Q Consensus 881 nl~----------~~~~~~~~~i~~~l~~~~-------------~~~~i~~lp---~gl~~~~~-------~~~~~LSgG 927 (1171)
++. ...+..+.+...++..+. +.+.+.++. .++...+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 331 112344444544444321 234444432 23332211 122358999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEE--EecChhhhhh-cC
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLI--IAHRLNTIID-CD 989 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~--vtH~~~~~~~-~d 989 (1171)
|+||+++|. + | |+|||+.+.+.+++.|.++.. ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 999999888777777766544 688875 8999998865 64
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-13 Score=149.75 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=94.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHHhhccC----
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDP---- 884 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~---- 884 (1171)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.++.. ++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988875532 1244556667777665543 67666531
Q ss_pred -------CC--CCCHHHHHHHHHHhcHHHHHHHccCC------------cchhhhcCCCCCChhHHHHHHHHHHh-ccCC
Q 001055 885 -------FS--EHSDADLWEALERAHLKDAIRRNSLG------------LDAQVSEAGENFSVGQRQLLSLSRAL-LRRS 942 (1171)
Q Consensus 885 -------~~--~~~~~~i~~~l~~~~~~~~i~~lp~g------------l~~~~~~~~~~LSgGqkqrl~lAral-l~~p 942 (1171)
.. .....+... +.. ....+ ++....+....||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~-l~~--------~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEA-LDK--------ICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHH-HHT--------TCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHH-HHh--------hcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCC
Confidence 00 111111111 110 00111 22223444567998 66 788 9999
Q ss_pred CEEEEe----cCCcCCCHHHHHHHHHHHHHHc
Q 001055 943 KILVLD----EATAAVDVRTDALIQKTIREEF 970 (1171)
Q Consensus 943 ~iLlLD----EpTs~LD~~t~~~i~~~l~~~~ 970 (1171)
++++|| |||+++|+.+.+.+.+.|+.+.
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999999 9999999999999999987754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=143.45 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=66.6
Q ss_pred CCCChhHHHHH------HHHHHhccC-CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEE
Q 001055 922 ENFSVGQRQLL------SLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 922 ~~LSgGqkqrl------~lArall~~-p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
..|||||+||+ ++||++..+ |++|||||||++||+.+...+.+.|.+...+++||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 36999999987 667999999 99999999999999999999999999865567999999999855559999999
Q ss_pred e
Q 001055 995 D 995 (1171)
Q Consensus 995 ~ 995 (1171)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=144.29 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=91.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCc-----eEEECCEecCC-CChHHHhhheEEEcCCcccccccHHhh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERG-----RILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~--l~g~~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+... .....+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 688999999999999999999994 4577766444 88888765311 112223445665544 45556
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRTD 959 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~~t~ 959 (1171)
+.+......+.. .+.+.-++.++ .+|+++++||||+.+|.+..
T Consensus 247 i~~~~~~~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 543222221111 11222222222 47999999999999997543
Q ss_pred ------------HHHHHHHHHHc--CCcEEEEEecChh-------------------hhhh-cCEEEEEeCcE
Q 001055 960 ------------ALIQKTIREEF--KSCTMLIIAHRLN-------------------TIID-CDRILLLDSGR 998 (1171)
Q Consensus 960 ------------~~i~~~l~~~~--~~~tvi~vtH~~~-------------------~~~~-~d~i~vl~~G~ 998 (1171)
..+.+.|+++. .++|||+|+|... .+.. ||.++.|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 45566666654 3799999999832 2344 89999998653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=140.68 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=103.6
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----Hhhh--eEEEcCCcccccc-cHHhhcc
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LRKI--LGIIPQSPVLFSG-TVRFNLD 883 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-tv~~nl~ 883 (1171)
.++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......+ ++++ +.+++|+..++.. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999997765432 3344 5599999877754 7888774
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-C-CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHH
Q 001055 884 PFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-N-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~-~-LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~ 960 (1171)
.. ... +.+. .++..|. . -..=..+.-.++|++..++++++||.+|. .|.
T Consensus 206 ~~-----------~~~------------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~---- 257 (328)
T 3e70_C 206 HA-----------KAR------------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI---- 257 (328)
T ss_dssp HH-----------HHH------------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH----
T ss_pred HH-----------Hhc------------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH----
Confidence 21 000 1110 0111111 0 01112333458999998999999996654 332
Q ss_pred HHHHHHHHHc--CCcEEEEEecChhhh---------hh-cCEEEEEeCcEEE
Q 001055 961 LIQKTIREEF--KSCTMLIIAHRLNTI---------ID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 961 ~i~~~l~~~~--~~~tvi~vtH~~~~~---------~~-~d~i~vl~~G~i~ 1000 (1171)
.+.++... .+.|+|++||.-... .. .-.|..+..|+-+
T Consensus 258 --~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 --VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 22233322 478999999953321 11 3466666666643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.20 E-value=9.6e-12 Score=142.25 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEEC-CEecCCCChHHHhhheEEEcCCcccccc-cHH
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILID-GFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 879 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~ 879 (1171)
-++++++. .+|++++|+||||||||||+++|+|... |..|+|.++ |.+.. ...+..++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 56777764 4799999999999999999999999999 999999987 76542 1345679999999988865 898
Q ss_pred hhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 880 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 880 ~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++-. . ....+++.+ .+.++++. .|+....+....+|| ||+||++||++++
T Consensus 280 e~~l-~-~l~~~e~~~-----~~~e~l~~--~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL-W-HLEPEQITQ-----GFVEFHDY--LGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC-C-CCCHHHHHH-----TSGGGGGG--TTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh-c-CCCHHHHHH-----HHHHHHHH--cCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 1 223333321 23333333 355555666677899 9999999999764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-13 Score=148.16 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=92.3
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhc----CCC--CCHHHHHHH
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF----GSA--FEPARYEKA 261 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~----g~~--~~~~~~~~~ 261 (1171)
.++|++++|+||||||||||+++|+|.++|. | ..+++++|+...+..+..+|+.. +.+ ++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL 91 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH
Confidence 4789999999999999999999999999875 3 24899999998887777776531 111 122222221
Q ss_pred HHHcCchHHHhcCCCC--CccccCCCCCccChHHHHHHHHH-HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC
Q 001055 262 IDVTSLQHDLDLLPGG--DVTEIGERGVNISGGQKQRVSMA-RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 262 ~~~~~l~~~~~~~~~~--~~~~i~~~g~~LSGGqrqRv~LA-raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
+..++.+ ....+.+.+..+||||+||+++| ++++.++.++++|||.. ..+....
T Consensus 92 ---------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~--- 148 (208)
T 3c8u_A 92 ---------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIW--- 148 (208)
T ss_dssp ---------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTC---
T ss_pred ---------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhc---
Confidence 1111111 23345677888999999999998 88888888888888842 1111111
Q ss_pred CEEEEEcCCcch
Q 001055 339 KTRVLVTNQLHF 350 (1171)
Q Consensus 339 ~tvi~vtH~~~~ 350 (1171)
..+|+++++.+.
T Consensus 149 d~~i~vd~~~~~ 160 (208)
T 3c8u_A 149 DVSIRLEVPMAD 160 (208)
T ss_dssp SEEEEECCCHHH
T ss_pred CEEEEEeCCHHH
Confidence 478888888775
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-14 Score=149.73 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=90.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCccceecCcEEEE-----------ecCCCCCcccHH
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELP-------------PVSDASAVIRGTVAYV-----------PQVSWIFNATVR 244 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-------------~~~g~~~~~~~~i~~v-----------~Q~~~l~~~Tv~ 244 (1171)
++|++++|+||||||||||+++|+|+++ |..|.. .+ +.|. +|+++++..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~---~g-~~~~~~~~~~~~~~i~~~~~l~~~~~~ 77 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE---DG-KDYYFVTREMMQRDIAAGDFIEHAEFS 77 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC---BT-TTBEECCHHHHHHHHHHTCEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc---CC-ceEEEccHHHHHHHHHcCCCEeeeeec
Confidence 5799999999999999999999999875 444421 11 1222 456666777888
Q ss_pred HHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH-HhccCCCEEEEeCcCCCCCHHH
Q 001055 245 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR-AVYSNSDVFIFDDPLSALDAHV 323 (1171)
Q Consensus 245 eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr-aL~~~~~vllLDEpts~LD~~~ 323 (1171)
+|+ +|. ..+.+.++++..... .++..+.|..+... + ++ .|| +++.+|++++|||+|+++|.++
T Consensus 78 ~n~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~----------~-~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 78 GNL-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKK----------T-DL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp TEE-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTT----------S-SC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred Ccc-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHh----------c-CC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 887 553 345555555432110 00111111111110 0 12 566 7889999999999999999998
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 324 GRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 324 ~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
.+.|.+.+..... + +.++| +. ..+|+|+++++
T Consensus 142 e~~i~~~l~~~~~-~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAART-D---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHH-H---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHHH-H---HHHhh--cc-CCceEEEECCC
Confidence 8888776654321 1 24456 22 66899988764
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.9e-14 Score=164.63 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=94.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHHhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 862 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 862 (1171)
++++++++.|+.. .+|+++ + ..+|++++|+||||||||||+++|+|++.|++|+|.+.|.++... +...++.
T Consensus 144 ~~l~~Lg~~~~~~--~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHNH--DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHHH--HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHHH--HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 5566777766432 478888 5 389999999999999999999999999999999999998877421 1122344
Q ss_pred heEEEc---------CCcccc--c-----ccHHhhccCC----------CCCCHHHHHHHHHHhcHHHHHHHccCCcchh
Q 001055 863 ILGIIP---------QSPVLF--S-----GTVRFNLDPF----------SEHSDADLWEALERAHLKDAIRRNSLGLDAQ 916 (1171)
Q Consensus 863 ~i~~v~---------Q~~~lf--~-----~tv~~nl~~~----------~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~ 916 (1171)
.+++.+ |+|.++ . .|+.+++... ...+..+..+.+...++ +..
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl-----------~~~ 288 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI-----------EPF 288 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC-----------CHH
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCC-----------cHH
Confidence 566544 888642 2 2677766421 00111122223333322 222
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 917 VSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 917 ~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
. ...+|||||+|| |||+|+.+|++..
T Consensus 289 ~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 289 L--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp H--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred H--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1 234699999999 9999999999875
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-11 Score=143.55 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred ccChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEe
Q 001055 288 NISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 361 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~----~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~ 361 (1171)
.||||||||++||++|+ .+|++|||||||++||+..+..+.+.+......+.++|+|||+..++..||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 59999999999999999 689999999999999999999999977665545789999999988888899999986
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-11 Score=138.65 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCccChHHHHHH------HHHHHhccC-CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 286 GVNISGGQKQRV------SMARAVYSN-SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 286 g~~LSGGqrqRv------~LAraL~~~-~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
...||||||||+ ++||+|..+ |+++||||||++||+..+..+.+.+... ..+.++|+|||+++....||+++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~th~~~~~~~~d~~~ 356 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-KSIPQMIIITHHRELEDVADVII 356 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CSCSEEEEEESCGGGGGGCSEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-ccCCeEEEEEChHHHHhhCCEEE
Confidence 358999999988 567999999 9999999999999999999999877654 34579999999998666789999
Q ss_pred EEeC
Q 001055 359 LVHE 362 (1171)
Q Consensus 359 ~l~~ 362 (1171)
+|++
T Consensus 357 ~l~k 360 (371)
T 3auy_A 357 NVKK 360 (371)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9973
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-11 Score=121.65 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
+|+++ +|+.++|+||||+|||||++++++.+.+ +| .+++++.++..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~-------------------------- 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL-------------------------- 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------------
Confidence 46666 8999999999999999999999999987 57 55554322110
Q ss_pred hccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHH
Q 001055 881 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~ 960 (1171)
. +++.+|++|+||||++ +|...++
T Consensus 78 ------~-------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 78 ------T-------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp ------C-------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred ------H-------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 0 2456899999999998 6655588
Q ss_pred HHHHHHHHHcC-CcE-EEEEecC
Q 001055 961 LIQKTIREEFK-SCT-MLIIAHR 981 (1171)
Q Consensus 961 ~i~~~l~~~~~-~~t-vi~vtH~ 981 (1171)
.+.+.+..... +++ +|++||.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 88888877653 577 8888885
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-12 Score=133.71 Aligned_cols=127 Identities=14% Similarity=0.076 Sum_probs=78.5
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 256 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~ 256 (1171)
.+++|++++|+||||||||||+++|+|. |+.|.+.. .+..++|++|++. ...||.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 44443211 1122566666543 3468888886421
Q ss_pred HHHHHHHHcCchHHHhcCCC-CCcc---ccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 001055 257 RYEKAIDVTSLQHDLDLLPG-GDVT---EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~-~~~~---~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~ 332 (1171)
......+....++.... .... ..+.....+|+|++||+++||++.++|+++ +|+...+.+++.+.
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 00000010000000000 0000 012234579999999999999999999876 68888887777543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5e-11 Score=123.96 Aligned_cols=112 Identities=22% Similarity=0.180 Sum_probs=74.4
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
+|.+++|+.++|+||||||||||+++++|.+.|..|... .|+ ++.+.+. .+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------~~~---------~~~~~~~--------~~~~~~-- 86 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------YFF---------DTKDLIF--------RLKHLM-- 86 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------CEE---------EHHHHHH--------HHHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------EEE---------EHHHHHH--------HHHHHh--
Confidence 567788999999999999999999999999876554321 111 1222110 111110
Q ss_pred cCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHhhccCCCEEEE
Q 001055 265 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTRVL 343 (1171)
Q Consensus 265 ~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~~~~~~~tvi~ 343 (1171)
... ... -....+.+|++|+||||++ ++|+.....+++.+......++++|+
T Consensus 87 -------~~~-------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ 138 (180)
T 3ec2_A 87 -------DEG-------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTII 138 (180)
T ss_dssp -------HHT-------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -------cCc-------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 000 000 0122345899999999995 89999988888765555556899999
Q ss_pred EcCCcc
Q 001055 344 VTNQLH 349 (1171)
Q Consensus 344 vtH~~~ 349 (1171)
+||...
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-14 Score=148.44 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=98.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------cCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHH
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAID 263 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~ 263 (1171)
|++++|+||||||||||+++|++ |.+|.+..- ...+++++|.+... ..|+++|+.+. ......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHh
Confidence 68999999999999999999997 444433221 11245666655332 45777777531 000110
Q ss_pred HcCchHHHhcCCCCCccccCCCCCcc--ChHHHHHHHHHH------HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc
Q 001055 264 VTSLQHDLDLLPGGDVTEIGERGVNI--SGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335 (1171)
Q Consensus 264 ~~~l~~~~~~~~~~~~~~i~~~g~~L--SGGqrqRv~LAr------aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~ 335 (1171)
.+....++.. ... ... +....+ |+|++|++.++. +++.+|....+|+ +||+...+. ++.+....
T Consensus 72 -~~~~~ild~~-~~~-~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 72 -AQNDVVLDYI-AFP-DEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp -TTCEEEEESC-CCH-HHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred -cCCcEEEeec-cCH-HHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0000000000 000 000 001234 889888888888 8888888878884 799988877 77665554
Q ss_pred cCCCEEEEEcCC-cchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 336 LSGKTRVLVTNQ-LHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 336 ~~~~tvi~vtH~-~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
..+.++|.+||. ++.++. ||+|+ ++|+++.+|+++.+
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 457899999998 888876 69998 99999998887654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-11 Score=124.96 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=75.7
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE 887 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~ 887 (1171)
+|.+++|+.++|+||||+|||||++++++.+.|.+|...+ + .+..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~---------~~~~~------- 77 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------F---------FDTKD------- 77 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------E---------EEHHH-------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------E---------EEHHH-------
Confidence 4677889999999999999999999999999877663110 0 01111
Q ss_pred CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc-CCCHHHHHHHHHHH
Q 001055 888 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTI 966 (1171)
Q Consensus 888 ~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs-~LD~~t~~~i~~~l 966 (1171)
+.+.+.. .... . ... -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 78 -----~~~~~~~-----~~~~-----------~--~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 78 -----LIFRLKH-----LMDE-----------G--KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp -----HHHHHHH-----HHHH-----------T--CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred -----HHHHHHH-----HhcC-----------c--hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 1111110 0000 0 000 1122245999999999995 89999999999999
Q ss_pred HHHc-CCcEEEEEecChh
Q 001055 967 REEF-KSCTMLIIAHRLN 983 (1171)
Q Consensus 967 ~~~~-~~~tvi~vtH~~~ 983 (1171)
.... .++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 8765 6799999999764
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.2e-12 Score=141.51 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCcccee--------cCcEEEEecCCCCC-cccHHHHHhcC-------
Q 001055 190 VGSLVAIVGGTGEGKTSLISAML---GELPPVSDASAVI--------RGTVAYVPQVSWIF-NATVRDNILFG------- 250 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~---G~~~~~~g~~~~~--------~~~i~~v~Q~~~l~-~~Tv~eni~~g------- 250 (1171)
++++++|+||||||||||+++|+ |...|+.|.+... ...+++++|++.++ ..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 9998887654321 11245566776664 56888888531
Q ss_pred ------CCCCHHHHHHHHHHcCch--HHHhcCCCC-CccccCCCCCccChHHHHHHHHHHHh-ccCCCEEEEe----CcC
Q 001055 251 ------SAFEPARYEKAIDVTSLQ--HDLDLLPGG-DVTEIGERGVNISGGQKQRVSMARAV-YSNSDVFIFD----DPL 316 (1171)
Q Consensus 251 ------~~~~~~~~~~~~~~~~l~--~~~~~~~~~-~~~~i~~~g~~LSGGqrqRv~LAraL-~~~~~vllLD----Ept 316 (1171)
.+....+.....+..... -.++.-+.. .....+.....||| |+ ||| +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 111221111111101100 000000000 00011223457999 66 788 9999999999 999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 001055 317 SALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~ 334 (1171)
++||+.+.+.+.+.+...
T Consensus 179 ~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCCGGGSHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHH
Confidence 999999888887766544
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-11 Score=126.09 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCc-------EEEEecCCCC
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------VAYVPQVSWI 238 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~-------i~~v~Q~~~l 238 (1171)
+++++.|+ ++.+++++||++++|++++|+||||||||||+++|+|.+ |++|.+...... -.+++|++.+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecccc
Confidence 34566664 246899999999999999999999999999999999999 888765321111 1278999888
Q ss_pred CcccHHHHHh-cC
Q 001055 239 FNATVRDNIL-FG 250 (1171)
Q Consensus 239 ~~~Tv~eni~-~g 250 (1171)
+..|+.||+. +|
T Consensus 87 ~~ltv~e~l~~~g 99 (158)
T 1htw_A 87 YRLADPEELEFMG 99 (158)
T ss_dssp TTCSCTTHHHHST
T ss_pred ccCCcHHHHHHcC
Confidence 8889999995 44
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-12 Score=148.65 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=94.8
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEE-------------------cCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCc
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTI-------------------PPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERG 843 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i-------------------~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p~~G 843 (1171)
+.|+++||++.|. ++++++++.+ .+|+++||+||||||||||+++|.|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3589999999994 5899999988 9999999999999999999999999998 9999
Q ss_pred eEEE---CCEecCCCChHHHhhheEEEcCCccccc-ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhc
Q 001055 844 RILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 919 (1171)
Q Consensus 844 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~ 919 (1171)
+|.+ ||.+. + ...++.++++ |+..++. .|+.+|+... ..+..+-. .+..
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~---------------------~~l~~~~~-~i~~ 164 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVKFV---------------------SDLKSGVP-NVTA 164 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHH---------------------HHHTTTCS-CEEE
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHHHH---------------------HHHhCCCC-ceec
Confidence 9999 88764 2 2456678888 7665443 3666554321 11111111 0000
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCH
Q 001055 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956 (1171)
Q Consensus 920 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~ 956 (1171)
.....+.+ +|+..+.+.+.+|+++|+|.|....+.
T Consensus 165 P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 165 PVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 01111222 333333355678899999999887763
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.6e-13 Score=147.45 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=104.1
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCc-cccc-ccHH
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVR 879 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~ 879 (1171)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++........++.+++++|.+ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5899999999999 999999999999999999999887 79999998887666666778899999986 3333 3677
Q ss_pred hhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc-------
Q 001055 880 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA------- 952 (1171)
Q Consensus 880 ~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs------- 952 (1171)
+|++......... + .+ ......++....|||||+||+.+++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r~~~--~----~~----------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--E----TG----------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--c----ch----------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 7887543211100 0 00 0011112222359999999999999999999975 99875
Q ss_pred -----CCCHHHHHHHHHHHH
Q 001055 953 -----AVDVRTDALIQKTIR 967 (1171)
Q Consensus 953 -----~LD~~t~~~i~~~l~ 967 (1171)
--|.+.+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 236677777766553
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.09 E-value=5e-10 Score=121.84 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=82.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G--~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.+++|++++|+||||||||||++.|++ ..+|+.|+. .+.+.|+.-+..+.. ++..+..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~---~~~~~~i~~~~~~~~---------------~~~~~~~~~ 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGG---EGKAMYIDTEGTFRP---------------ERLLAVAER 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSCCCH---------------HHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCC---CCeEEEEECCCCcCH---------------HHHHHHHHH
Confidence 589999999999999999999999999 555532221 123555554432111 111111111
Q ss_pred cCchH--HHhcCCCCCccccCCCCCccChHHHHH-HHHHHHhc--cCCCEEEEeCcCCCCCHH-------H-----HHHH
Q 001055 265 TSLQH--DLDLLPGGDVTEIGERGVNISGGQKQR-VSMARAVY--SNSDVFIFDDPLSALDAH-------V-----GRQV 327 (1171)
Q Consensus 265 ~~l~~--~~~~~~~~~~~~i~~~g~~LSGGqrqR-v~LAraL~--~~~~vllLDEpts~LD~~-------~-----~~~l 327 (1171)
.+... .++.+ ... ...++.+... +.-++.++ .+|+++++|||++.+|+. . ...+
T Consensus 82 ~g~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 82 YGLSGSDVLDNV-----AYA----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp TTCCHHHHHHTE-----EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred cCCCHHHHhhCe-----EEE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 11110 01110 000 1245554332 33333333 589999999999999985 3 2344
Q ss_pred HHHHHhhcc-CCCEEEEEcCCcchhh--------------------hcCEEEEEeCC
Q 001055 328 FDRCIRGEL-SGKTRVLVTNQLHFLS--------------------QVDRIILVHEG 363 (1171)
Q Consensus 328 ~~~l~~~~~-~~~tvi~vtH~~~~l~--------------------~~d~i~~l~~G 363 (1171)
+..+.+... .|.|+|+++|...... .||+++.|++|
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 444444333 3899999999654322 36999999865
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-11 Score=138.86 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=75.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHHh-hheEEEcCCcccc------cccHH
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLR-KILGIIPQSPVLF------SGTVR 879 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~tv~ 879 (1171)
.+.+|++++|+||||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44679999999999999999999999 99999999999 9988865432 222 3699999999542 3478
Q ss_pred hhcc-CCC----------C--C---CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 880 FNLD-PFS----------E--H---SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 880 ~nl~-~~~----------~--~---~~~~i~~~l~~~~~~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+|+. .+. . + ....+.++++..++.+ ..++ ....|||.++|++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----------~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----------YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----------HHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----------HHHHHHHHHHHHHHHhc
Confidence 7772 121 1 1 1234666666655543 2222 23469999999999987
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=116.73 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=68.5
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
+|+++ +|+.++|+||||||||||+++++|.+.+. |. .+.|++.......
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~------~~~~~~~~~~~~~------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK------NAAYIDAASMPLT------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC------CEEEEETTTSCCC-------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC------cEEEEcHHHhhHH-------------------
Confidence 45555 89999999999999999999999998762 31 2455554422110
Q ss_pred HHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCC
Q 001055 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339 (1171)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~ 339 (1171)
+++.+|++|+||||++ +|+...+.+++.+.....+|+
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 3456899999999998 666557788876555555578
Q ss_pred E-EEEEcCC
Q 001055 340 T-RVLVTNQ 347 (1171)
Q Consensus 340 t-vi~vtH~ 347 (1171)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 7 8888874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.03 E-value=3.5e-11 Score=137.62 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=76.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCccce---------ecCcEEEEecCCCCC-cccHHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV---------IRGTVAYVPQVSWIF-NATVRDNI 247 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-~~~g~~~~---------~~~~i~~v~Q~~~l~-~~Tv~eni 247 (1171)
.-++++++. .+|++++|+||||||||||+++|+|..+ |.+|.+.. .+..+++++|++.++ ..||+++.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357777774 4899999999999999999999999999 98876532 233689999999886 56999964
Q ss_pred hcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 248 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 248 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+.+ .+.+..... ..+.++.+.. ....+....+|| ||+||++||++++
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~gl--~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYLGH--CKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGTTC--SSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHcCC--chhcCCCcccCC-HHHHHHHHHhcCC
Confidence 332 233222111 1111221111 011233446899 9999999998864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.03 E-value=7e-11 Score=139.32 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCCCC-cc
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NA 241 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~ 241 (1171)
-+++||++++|++++|+|+||||||||+++|+|.++|++|.+... +..|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 467999999999999999999999999999999998887654321 23489999998765 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc-CC-CEEEEeCcCCCC
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS-NS-DVFIFDDPLSAL 319 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~-~~-~vllLDEpts~L 319 (1171)
||++||.++.. .+....+-...+.... -..|-.-.++++.++|++.. .| ++||..+|+++.
T Consensus 363 tV~e~l~~a~~------------~~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKA------------RNIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHH------------TTCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHh------------cCCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 99999975411 0000000000110000 01222234578889997754 46 466666699987
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEcC
Q 001055 320 DAHVGRQVFDRCIRGELSGKTRVLVTN 346 (1171)
Q Consensus 320 D~~~~~~l~~~l~~~~~~~~tvi~vtH 346 (1171)
|+.....- +.. ..+.|.|++||
T Consensus 426 ~al~~ak~---f~~--~~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVSQAKL---FHE--AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHH---HHH--HTCCSEEEEEC
T ss_pred HHHHHHHH---HHh--hcCCCEEEEEc
Confidence 66532221 111 23678999999
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-11 Score=139.86 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=89.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC--------CCCCCcccee-----------------------c----CcEEEE---e
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL--------PPVSDASAVI-----------------------R----GTVAYV---P 233 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~--------~~~~g~~~~~-----------------------~----~~i~~v---~ 233 (1171)
++++|+|+||||||||++.|+|.. .|+.|.+..- + ..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999987 6777754220 1 125666 6
Q ss_pred cCCCC-CcccHHHHHhcCCCCCHHHHHHHH-------HHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc
Q 001055 234 QVSWI-FNATVRDNILFGSAFEPARYEKAI-------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305 (1171)
Q Consensus 234 Q~~~l-~~~Tv~eni~~g~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~ 305 (1171)
|++.+ ++.+|.||+.++.+ ..+.+.+ ....+...+..... ........+|||||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~vd~---~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIALVDA---VHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEEEET---TTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEEEEH---HHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 77654 57888888877632 2111111 11111111110000 00000112689999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~ 352 (1171)
+||++ ||| +.+.+.+... ..+.+++++||+...++
T Consensus 159 k~dl~--de~---------~~l~~~l~~l-~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARI-NARAPVYTVTHGDIDLG 193 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHH-CSSSCEEECCSSCCCGG
T ss_pred CcccC--CHH---------HHHHHHHHHh-CCCCeEEEecccCCCHH
Confidence 99987 998 4455544443 35789999999754443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=128.27 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=94.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+......
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 3455666777542 2 678888 8999999999999999999999999999999999988776431000
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+ .+....+.. |++-.. .+......+.+|.+|+++...+++++|
T Consensus 143 -------------~-----------ql~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 -------------E-----------QLRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------H-----------HHHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------H-----------HHHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0 000000110 111110 001123345678999999889999999
Q ss_pred EecC-CcCCCHHHHHHHHHHHHHHcCCcEE
Q 001055 947 LDEA-TAAVDVRTDALIQKTIREEFKSCTM 975 (1171)
Q Consensus 947 LDEp-Ts~LD~~t~~~i~~~l~~~~~~~tv 975 (1171)
+||| ++++|......+.+..+....+.++
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~ 215 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVL 215 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEE
Confidence 9999 9999998888888877665333333
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-11 Score=138.20 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=91.9
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhc
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 882 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl 882 (1171)
--++++|+++.|++++|+|+||||||||+++|+|..+ .+.+.+... +...+++|+++.. ...++.++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEecc
Confidence 3589999999999999999999999999999999843 345544433 2345777777640 011222221
Q ss_pred cCC------CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCH
Q 001055 883 DPF------SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956 (1171)
Q Consensus 883 ~~~------~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~ 956 (1171)
-.. ...... ..+.+++ ++..+..+ ++. .....+||+|++|++++|++|..+|.||++ +.+|.
T Consensus 214 Gli~~a~~~~~L~~~-fl~~~er--a~~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGLE-FLRHIAR--TRVLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCHH-HHHHHTS--SSEEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhHH-HHHHHHH--HHhhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 110 011111 1111111 01011111 110 122346999999999999999999999999 99998
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEEec
Q 001055 957 RTDALIQKTIREEF-KSCTMLIIAH 980 (1171)
Q Consensus 957 ~t~~~i~~~l~~~~-~~~tvi~vtH 980 (1171)
.....+.+...... .+.+++.||.
T Consensus 282 ~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 76633333333222 3556666654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-10 Score=135.48 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=92.1
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcc-ceecCcEEEEecCCCCCcccHHHHHhcC------CCC
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG------SAF 253 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~-~~~~~~i~~v~Q~~~l~~~Tv~eni~~g------~~~ 253 (1171)
-++++|+++.|+.++|+|+||||||||+++|+|..+...+.. ..+...++++.|++. ...++.|+.-+. ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ceEEEEeccccccchhhhhhh
Confidence 479999999999999999999999999999999854211111 112345788887641 111222222111 111
Q ss_pred CHHHHHHHHHHcC-chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 001055 254 EPARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332 (1171)
Q Consensus 254 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~ 332 (1171)
.. .+.+..+.+. +.+.++. + .....+||+||+|++++|++|...|.++++ |.+|+... ...+.+.
T Consensus 226 ~~-~fl~~~era~~lL~vvDl------s--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~ 291 (416)
T 1udx_A 226 GL-EFLRHIARTRVLLYVLDA------A--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALA 291 (416)
T ss_dssp CH-HHHHHHTSSSEEEEEEET------T--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHH
T ss_pred hH-HHHHHHHHHHhhhEEeCC------c--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHH
Confidence 11 1212121111 1111111 0 122357999999999999999999999999 99998765 3333333
Q ss_pred hh-ccCCCEEEEEcC
Q 001055 333 RG-ELSGKTRVLVTN 346 (1171)
Q Consensus 333 ~~-~~~~~tvi~vtH 346 (1171)
+. ...+.++++||.
T Consensus 292 ~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 292 DALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHTTTSCEEECCT
T ss_pred HHHHhcCCeEEEEEC
Confidence 32 234667777763
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-12 Score=140.02 Aligned_cols=148 Identities=7% Similarity=0.070 Sum_probs=56.4
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCceEEECCEecCCCChHH-HhhheEEEcCCcccccc-cH
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSG-TV 878 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~-g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~-tv 878 (1171)
...+++||++++|+++||+||||||||||+++|+ |+++| + .++.++....+.. .+..++|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4678999999999999999999999999999999 99843 1 2222222111111 11234466666554432 33
Q ss_pred Hhhcc----CCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh--hHHHHH-HHH-HHhccCCCEEEE
Q 001055 879 RFNLD----PFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV--GQRQLL-SLS-RALLRRSKILVL 947 (1171)
Q Consensus 879 ~~nl~----~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg--Gqkqrl-~lA-rall~~p~iLlL 947 (1171)
.+++. .+.. ...+.+.+.++.. ....++ ..+.| .-++++ .-+ ..++..|+..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKG------------VSTLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHT------------CEEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcC------------CeEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHH
Confidence 33332 1110 0112233333221 000000 00111 112332 112 234567788888
Q ss_pred ecCCcCCCHHHHHHHHHHHHHH
Q 001055 948 DEATAAVDVRTDALIQKTIREE 969 (1171)
Q Consensus 948 DEpTs~LD~~t~~~i~~~l~~~ 969 (1171)
+|+..+.|..+++.+.+.|...
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHC--------------CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999988888887777653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-10 Score=129.57 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=66.8
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHHhhheEEEcCCcc-------------
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPV------------- 872 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 872 (1171)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+|+|+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 455679999999999999999999999999999999999 8998876542211246999999985
Q ss_pred ---cccc-cHHhhccCCC----CCCHHHHHHHHHHhcH-HHHHHHcc
Q 001055 873 ---LFSG-TVRFNLDPFS----EHSDADLWEALERAHL-KDAIRRNS 910 (1171)
Q Consensus 873 ---lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~-~~~i~~lp 910 (1171)
+|.. |+ +|+.+.. ......+.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3543 77 8887531 1224567888888888 45555555
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-11 Score=139.62 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=103.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------ec
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IR 226 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~ 226 (1171)
|+++++++.|.. +.+|+++||++++|++++|+|+||||||||+++|+|.+.|++|.+.. .+
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 445566677742 46899999999999999999999999999999999998887665421 23
Q ss_pred CcEEEEecCCCCCc----------c---cHHHHHh-c---CCC----------CCHHHHHHHHHHcCc---------hHH
Q 001055 227 GTVAYVPQVSWIFN----------A---TVRDNIL-F---GSA----------FEPARYEKAIDVTSL---------QHD 270 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~----------~---Tv~eni~-~---g~~----------~~~~~~~~~~~~~~l---------~~~ 270 (1171)
..+++++|++.+|. + +++|.+. + +.+ .....+ .+.+.+ ...
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v---~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC---
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH---HhhCCEEEEEEcCCCccc
Confidence 35899999987752 1 2333321 0 100 011111 010000 000
Q ss_pred Hh-------cCCCC-CccccCC-CCCccChHHHHHHHHHHHhcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHhh
Q 001055 271 LD-------LLPGG-DVTEIGE-RGVNISGGQKQRVSMARAVYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 271 ~~-------~~~~~-~~~~i~~-~g~~LSGGqrqRv~LAraL~~------~~~vllLDEpts~LD~~~~~~l~~~l~~~ 334 (1171)
.. ..+.. -.+.++. ....+|+|++|++..|++++. +|+++. +|++|......+++.+.+.
T Consensus 184 ~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 184 LQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp ---CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 00 00000 0011221 124689999999999999987 688876 9999999999999877553
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.94 E-value=3e-12 Score=148.44 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=110.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCceEEECCEecCCCC-hHHHhhhe---EEEcCCccc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR------------IVELERGRILIDGFDIAKFG-LMDLRKIL---GIIPQSPVL 873 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g------------~~~p~~G~I~i~g~~i~~~~-~~~~r~~i---~~v~Q~~~l 873 (1171)
.+++|.++||+|+||||||||+++|+| ..+|+.|.|.+.|..+..+. ...-++.+ .++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67899999999874321100 00001222 367777766
Q ss_pred ccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC--CEEEEecC
Q 001055 874 FSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS--KILVLDEA 950 (1171)
Q Consensus 874 f~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p--~iLlLDEp 950 (1171)
..+ +..+++. . .....++.+.. +-.. ++..-+.....+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~------~-~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG------N-AFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC------H-HHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH------H-HHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence 644 4444431 0 11111111100 0000 0000012233456552 89 99999999
Q ss_pred CcCCCHHHHHHHHHHHHHH-cC-CcEEEEEecChhhhhh-cCEEE-EEeCc-EEEEecCh
Q 001055 951 TAAVDVRTDALIQKTIREE-FK-SCTMLIIAHRLNTIID-CDRIL-LLDSG-RVLEYDTP 1005 (1171)
Q Consensus 951 Ts~LD~~t~~~i~~~l~~~-~~-~~tvi~vtH~~~~~~~-~d~i~-vl~~G-~i~~~g~~ 1005 (1171)
+.++|++..+..++.+... .. +.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 54 4554 3999999887 99999 99999 88766654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-12 Score=149.41 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=78.5
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------------cCcEEEEe---------c
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------RGTVAYVP---------Q 234 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----------------~~~i~~v~---------Q 234 (1171)
+|+++ + .++|++++|+|||||||||||++|+|+++|++|.+... +..+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 37999999999999999999999999999987754321 12244443 8
Q ss_pred CCCC--Cc-----ccHHHHHhcCC----------CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 235 VSWI--FN-----ATVRDNILFGS----------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 235 ~~~l--~~-----~Tv~eni~~g~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+|.+ +. .|+.+++.++. ..+.......+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 8865 22 48888886531 11112222234444443321 124799999999
Q ss_pred HHHHHhccCCCEEEE
Q 001055 298 SMARAVYSNSDVFIF 312 (1171)
Q Consensus 298 ~LAraL~~~~~vllL 312 (1171)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.93 E-value=8.8e-12 Score=150.06 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=100.9
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee---------cCcEEEEecCCCCC-cccHHHHHh
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVAYVPQVSWIF-NATVRDNIL 248 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------~~~i~~v~Q~~~l~-~~Tv~eni~ 248 (1171)
.+++++++.+++|+.++|+||||||||||+++|+|+++|+.|.+..- ...+++..|..... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46889999999999999999999999999999999999987654321 12366677665422 246666654
Q ss_pred cC-----------CCCCHHHHHHHHHHc--Cc-----------hHHH---hcCCCCCccccC-------CCCCccChHHH
Q 001055 249 FG-----------SAFEPARYEKAIDVT--SL-----------QHDL---DLLPGGDVTEIG-------ERGVNISGGQK 294 (1171)
Q Consensus 249 ~g-----------~~~~~~~~~~~~~~~--~l-----------~~~~---~~~~~~~~~~i~-------~~g~~LSGGqr 294 (1171)
.. .-.+.+ ...+++.+ +. ...+ ...+.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 22 111122 22222221 10 1111 111111111110 12236899999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEE--EcCCcchhhh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL--VTNQLHFLSQ 353 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~--vtH~~~~l~~ 353 (1171)
||+++|. + | |+||||...+.+++.+.+....++|+++ +||+++.+..
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9987651 1 6 9999998777666655554455889875 8999988754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-09 Score=122.45 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=86.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHH--HHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLIS--AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~--~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.|++|++++|+||||||||||++ ++.+..+++.|+. .+.+.|+.-+..+ ...+.....+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~~~viyid~E~~~---------------~~~rl~~~a~~ 235 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---EGKCLYIDTEGTF---------------RPVRLVSIAQR 235 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSCC---------------CHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---CCcEEEEeCCCcc---------------CHHHHHHHHHH
Confidence 68999999999999999999999 4567777765531 2345565544321 22233333333
Q ss_pred cCchHH--HhcCCCCCccccCCCCCccCh-HHHHHHHHHHHhc--cCCCEEEEeCcCCCCCHHHH------------HHH
Q 001055 265 TSLQHD--LDLLPGGDVTEIGERGVNISG-GQKQRVSMARAVY--SNSDVFIFDDPLSALDAHVG------------RQV 327 (1171)
Q Consensus 265 ~~l~~~--~~~~~~~~~~~i~~~g~~LSG-GqrqRv~LAraL~--~~~~vllLDEpts~LD~~~~------------~~l 327 (1171)
.++... ++... +. ...++ .+.+.+.-++.++ .+|+++++|||++.+|+... ..+
T Consensus 236 ~gl~~~~vleni~------~~---~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 236 FGLDPDDALNNVA------YA---RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp TTCCHHHHHHTEE------EE---ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred cCCChHhHhhcEE------Ee---ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence 333211 11100 00 01122 2344444343433 47999999999999997533 445
Q ss_pred HHHHHhhcc-CCCEEEEEcCCcc-------------------hhhh-cCEEEEEeCC
Q 001055 328 FDRCIRGEL-SGKTRVLVTNQLH-------------------FLSQ-VDRIILVHEG 363 (1171)
Q Consensus 328 ~~~l~~~~~-~~~tvi~vtH~~~-------------------~l~~-~d~i~~l~~G 363 (1171)
.+.|.+..+ .|.|+|+|+|... .+.+ +|.++.|+++
T Consensus 307 l~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 307 MRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 555555433 3899999999832 1233 5888888765
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-11 Score=134.63 Aligned_cols=135 Identities=17% Similarity=0.084 Sum_probs=83.3
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCCCC-cccHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNI 247 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni 247 (1171)
..++|++++|+||||||||||++.|+|.++|++|.+... +-.+.+++|...++ ..||++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 347899999999999999999999999999987765321 11366999988776 57999999
Q ss_pred hcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH
Q 001055 248 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327 (1171)
Q Consensus 248 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l 327 (1171)
.++.. ..... -.++. ++... .-..=.++--.++|++..++.+++||.++. .|.... +
T Consensus 205 ~~~~~----------~~~d~-vliDt-aG~~~--------~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--~ 261 (328)
T 3e70_C 205 QHAKA----------RGIDV-VLIDT-AGRSE--------TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--A 261 (328)
T ss_dssp HHHHH----------HTCSE-EEEEE-CCSCC--------TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--H
T ss_pred HHHHh----------ccchh-hHHhh-ccchh--------HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--H
Confidence 75310 00000 00111 11000 000011222248999999888999995554 433321 1
Q ss_pred HHHHHhhccCCCEEEEEcCC
Q 001055 328 FDRCIRGELSGKTRVLVTNQ 347 (1171)
Q Consensus 328 ~~~l~~~~~~~~tvi~vtH~ 347 (1171)
..+. ...+.|.|++||.
T Consensus 262 -~~~~--~~~~it~iilTKl 278 (328)
T 3e70_C 262 -RQFN--EAVKIDGIILTKL 278 (328)
T ss_dssp -HHHH--HHSCCCEEEEECG
T ss_pred -HHHH--HhcCCCEEEEeCc
Confidence 1111 1236899999994
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.85 E-value=5.5e-09 Score=117.60 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=72.2
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC
Q 001055 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 886 (1171)
Q Consensus 807 vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~ 886 (1171)
+++..++|++++|+|+|||||||++..|++.+.+.+|+|.+.+.|.... ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHH------
Confidence 3445678999999999999999999999999999999999987664220 0011
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH---HHHHHhccCCCEEEEecCCc
Q 001055 887 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL---SLSRALLRRSKILVLDEATA 952 (1171)
Q Consensus 887 ~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl---~lArall~~p~iLlLDEpTs 952 (1171)
++ ..+.+.. |++. ...+|||+.|++ ++++++.++|+++|+|||..
T Consensus 150 -----qL---------~~~~~~~--gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 -----QL---------KIWGERV--GATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HH---------HHHHHHH--TCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HH---------HHHHHHc--CCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11 1122221 2211 124789999999 99999999999999999974
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-09 Score=129.26 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=56.2
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
++.++++..- .+|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~~----~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLINW----NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEEE----TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEecc----ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 4556655431 489999999999 9999999999999999999999999999999999998875543
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-09 Score=120.15 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=87.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHH
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA 891 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~ 891 (1171)
.+|++++++|+||+||||++..|++.+.+++|. ++.++.+|+. ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 479999999999999999999999999987781 3445555542 2222222211
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-
Q 001055 892 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 970 (1171)
Q Consensus 892 ~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~- 970 (1171)
.. +. .|+.... ..+ +..-+.+++++ ++|+++|+| |+|+|+.....+.+..+-..
T Consensus 156 ----~~---------~~--~gl~~~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ----YA---------EL--LQAPLEV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ----HH---------TT--TTCCCCB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ----HH---------Hh--cCCCeEe-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 00 11 1111100 112 33456667754 999999999 99999877766665443322
Q ss_pred --CCcEEEEE--ecChhhhhh-cCEEEEEeCcEEEE
Q 001055 971 --KSCTMLII--AHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 971 --~~~tvi~v--tH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
...+++++ +|....+.. |+++..+..|.++.
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23445555 899887776 77766666666664
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=122.26 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=74.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc-CCCCCCCccce----------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHH
Q 001055 193 LVAIVGGTGEGKTSLISAMLG-ELPPVSDASAV----------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G-~~~~~~g~~~~----------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
.+.|+||||+||||++++++| ++.|+.|.+.. .+..+++++|.+.+. +.+-. +. .+.....+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM-----GN-NDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc-----CC-cchHHHHH
Confidence 389999999999999999999 67777654321 123478888877652 22100 00 11112222
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCE
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~t 340 (1171)
.++... ...+ +.+.. .||| +..+|+++++|||++ ||+.....+.+.+.. ...+.+
T Consensus 112 ~i~~~~-----~~~~------~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~-~~~~~~ 166 (354)
T 1sxj_E 112 LLKEVA-----QMEQ------VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEK-YSKNIR 166 (354)
T ss_dssp HHHHHT-----TTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHH-STTTEE
T ss_pred HHHHHH-----Hhcc------ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh-hcCCCE
Confidence 222211 0000 00000 4566 788999999999999 999999999886544 335689
Q ss_pred EEEEcCCcchhh
Q 001055 341 RVLVTNQLHFLS 352 (1171)
Q Consensus 341 vi~vtH~~~~l~ 352 (1171)
+|++||+++.+.
T Consensus 167 ~Il~t~~~~~l~ 178 (354)
T 1sxj_E 167 LIMVCDSMSPII 178 (354)
T ss_dssp EEEEESCSCSSC
T ss_pred EEEEeCCHHHHH
Confidence 999999987653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-09 Score=123.83 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec-CcEEEEecCCCC------CcccHH
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR-GTVAYVPQVSWI------FNATVR 244 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~-~~i~~v~Q~~~l------~~~Tv~ 244 (1171)
+++.+|++++|+||||||||||+++|+ ..+|++|.+.. .+ ..+||++|.|.+ +..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 455679999999999999999999999 99998876543 11 247999999854 24688
Q ss_pred HHH--hcCC------------CC--CHHHHHHHHHHcCchH-HHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 245 DNI--LFGS------------AF--EPARYEKAIDVTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 245 eni--~~g~------------~~--~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
||+ .|+. .. ...++.++++..++.. ..+..+ ..|||.++|++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4530 11 1235667777777764 333333 479999999999987
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-09 Score=115.47 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=56.5
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHHhhcc
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD 883 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~ 883 (1171)
|+++++|+++||+||||||||||+++|+|++ | .+.+++.++...+....+..++|+||++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 5778899999999999999999999999996 3 588888887766655557789999999987755 6665553
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-09 Score=113.04 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred Ccceee-eEEEcCCCEEEEECCCCCcHHHHHH-HHhcCCCCCCceEEECCEecCCCChHHHh---hheEEEcCCcccc-c
Q 001055 802 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLN-TLFRIVELERGRILIDGFDIAKFGLMDLR---KILGIIPQSPVLF-S 875 (1171)
Q Consensus 802 ~~l~~v-s~~i~~Ge~v~ivG~nGsGKSTLl~-~l~g~~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~lf-~ 875 (1171)
+.|+++ .-.+++|+.++|+||||||||||+. ++.+..++..+.+++++.. +...++ ..+|+.+|+.... +
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~~~ 85 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEKGM 85 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHHTS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhCCc
Confidence 356666 5678999999999999999999965 4455555444555555432 333332 2355555543110 0
Q ss_pred ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcC
Q 001055 876 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAA 953 (1171)
Q Consensus 876 ~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~ 953 (1171)
-++.+ .+... .+ ..+. .+...... +....+.+..++.++ .+|+++++|+|+..
T Consensus 86 l~~~~---~~~~~-----------~~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 86 FAMVD---AFTAG-----------IG------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp EEEEE---CSTTT-----------TC------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred EEEEe---cchhh-----------cc------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 01111 00000 00 0000 00000000 111222333333333 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHHc--CCcEEEEEecChhh--------hhh-cCEEEEEeC
Q 001055 954 V--DVRTDALIQKTIREEF--KSCTMLIIAHRLNT--------IID-CDRILLLDS 996 (1171)
Q Consensus 954 L--D~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~--------~~~-~d~i~vl~~ 996 (1171)
+ |+...+.....|.+.. .++|||+++|.... +.. ||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5533333333333332 47999999998765 334 999999964
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.1e-12 Score=143.40 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=104.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHhcCC----CCCCceEEECCEecCCC
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPS-------DKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKF 855 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~G-------e~v~ivG~nGsGKSTLl~~l~g~~----~p~~G~I~i~g~~i~~~ 855 (1171)
++.++++..|+.. .+++++++.+.+| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~--~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQE--NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSCH--HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCcH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3444566666543 5899999999877 899999999999999999999998 77888887766554321
Q ss_pred ChHHHhhheEEEcCCcccccccHHhhccCCC-CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 856 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.....+..|.+++|...++. ++.+++...- .. . ..... ..+...+. +.++.. .......||+|+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~-----~~i~~~l~--~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA-----KSIRIDIQ--PFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc-----ccccccCC--CeEEEE-ecCCcccCCHHH
Confidence 11111456999999887764 6666653110 00 0 00000 00111111 123322 333445799999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 986 (1171)
|||++++ .+||+.+...+.+.|++..... -++|+.+.+.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~ 206 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAE 206 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHH
Confidence 9998654 6788888888888887653210 1356555443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-09 Score=122.62 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=42.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHHhhheEEEcCCccccc-----ccHHhh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFN 881 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~~n 881 (1171)
++.+|++++|+||||+|||||+++|.|+..|..|+|.+ +|+++.... ...+..+|+++|.|.+.. .|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888776532 122223899999997653 367 77
Q ss_pred c
Q 001055 882 L 882 (1171)
Q Consensus 882 l 882 (1171)
+
T Consensus 247 l 247 (307)
T 1t9h_A 247 L 247 (307)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-10 Score=134.67 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=98.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcC------------CCCCCCccceec----------------CcEEEEecCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGE------------LPPVSDASAVIR----------------GTVAYVPQVSWI 238 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~------------~~~~~g~~~~~~----------------~~i~~v~Q~~~l 238 (1171)
.+++|.+++|+|+||+|||||+++|+|. ..|+.|.+.... +...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 4578999999999999999999999993 334444332211 012456666655
Q ss_pred C-cccHHHHHhcCCCCCHHHHHHHHHHcC-chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC--CEEEEeC
Q 001055 239 F-NATVRDNILFGSAFEPARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS--DVFIFDD 314 (1171)
Q Consensus 239 ~-~~Tv~eni~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~--~vllLDE 314 (1171)
. ..|..|++ . ..+...++.+. +.+.++... ......+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhchh
Confidence 4 22332222 1 11222222221 111112111 11223456653 89 9999999
Q ss_pred cCCCCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCcchhhh-cCEEE-EEeCC-EEEEecCh
Q 001055 315 PLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRII-LVHEG-MVKEEGTF 371 (1171)
Q Consensus 315 pts~LD~~~~~~l~~~l~~~-~~~~~tvi~vtH~~~~l~~-~d~i~-~l~~G-~i~~~g~~ 371 (1171)
|++.+|+...+..++.+.+. ...|+|+ ++|....+.. ||++. .|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999988877666 5556775 3999887765 69998 89999 87765544
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-09 Score=111.87 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=77.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CCceEEECCEecCC--CChHHHhhheEEEcCCccccc--ccHHh
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVEL-----------ERGRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFS--GTVRF 880 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~tv~~ 880 (1171)
+++|+|+||||||||++.+.|...| ..|+|.++|.++.- ++....++..++++|...-.. -+|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998765 57999999976531 111111122233332210000 01111
Q ss_pred hccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHH
Q 001055 881 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~ 959 (1171)
+.+. .+-+.+...+. +.-...+.+.. -.+.... .|..-..+.+.+|++++.+|+++++| ||++|....
T Consensus 111 ~~~~---~s~~~~~~~~~-----~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKH---LTYENVERWLK-----ELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCH---HHHHTHHHHHH-----HHHHHSCTTCEEEEEEECG-GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCH---HHHHHHHHHHH-----HHHHhcCCCCcEEEEEECc-ccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 1110 00001111111 00000011100 0111111 13222234578899999999999999 999999999
Q ss_pred HHHHHHHHH
Q 001055 960 ALIQKTIRE 968 (1171)
Q Consensus 960 ~~i~~~l~~ 968 (1171)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.66 E-value=8.2e-11 Score=131.37 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=91.2
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++++.+.|.. +.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45666666753 25899999999999 99999999999999999999885 79999998776544444456678888
Q ss_pred cCCcc-ccc-ccHHhhccCCCCC--C-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 868 PQSPV-LFS-GTVRFNLDPFSEH--S-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 868 ~Q~~~-lf~-~tv~~nl~~~~~~--~-----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|+.. .+. .++.++++..... . .++..+. +.+++ ..|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88764 332 2556666421110 0 0111111 11111 24899999999999999
Q ss_pred ccCCCE
Q 001055 939 LRRSKI 944 (1171)
Q Consensus 939 l~~p~i 944 (1171)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999986
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.66 E-value=4.6e-08 Score=112.31 Aligned_cols=143 Identities=21% Similarity=0.246 Sum_probs=83.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 888 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~ 888 (1171)
-+++|+++.|.||+|+|||||+..++.......|.+ +++... ..+. ...+++|+-+++..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i--------------- 118 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLV--------------- 118 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEE---------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEE---------------
Confidence 578999999999999999999888776554444444 333211 0111 111122221111100
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC--CCEEEEecCCcCC----------CH
Q 001055 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR--SKILVLDEATAAV----------DV 956 (1171)
Q Consensus 889 ~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~--p~iLlLDEpTs~L----------D~ 956 (1171)
.. ..+. .|-+.++++++++ |+++|+||+++.+ |+
T Consensus 119 -----------------------------~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 119 -----------------------------SQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------------------EC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------------------ec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00 0121 2345577777755 9999999999988 32
Q ss_pred ---HHHHHHHHHHHHH----c-CCcEEEEEecChh----------------hhhh-cCEEEEEeCcEEEEecC
Q 001055 957 ---RTDALIQKTIREE----F-KSCTMLIIAHRLN----------------TIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 957 ---~t~~~i~~~l~~~----~-~~~tvi~vtH~~~----------------~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
...+.+.+.++++ . .++|||+++|-.. .++. ||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1112333444333 1 4899999999653 1344 99999998877665554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-08 Score=112.22 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCch
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 268 (1171)
.+|++++++|+|||||||++..|++.+.++.| .+|.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g-- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ-- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCCS--STTHHHHHHH-----------HHTTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCcc--cchHHHHHHH-----------HHHhcC--
Confidence 47899999999999999999999999877655 35889998873 3334443321 111111
Q ss_pred HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc---CCCEEEEE-
Q 001055 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---SGKTRVLV- 344 (1171)
Q Consensus 269 ~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~---~~~tvi~v- 344 (1171)
++. .. ..+ +..-+.+|+++ .++|++|+| |+++|+.....+.+ +.+... ...+++++
T Consensus 162 -----l~~-----~~----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~ 221 (296)
T 2px0_A 162 -----APL-----EV----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLS 221 (296)
T ss_dssp -----CCC-----CB----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEE
T ss_pred -----CCe-----Ee----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEE
Confidence 110 00 012 34456777764 899999999 89999876554443 232221 22334444
Q ss_pred -cCCcchhhh-cCEEEEEeCCEEEE
Q 001055 345 -TNQLHFLSQ-VDRIILVHEGMVKE 367 (1171)
Q Consensus 345 -tH~~~~l~~-~d~i~~l~~G~i~~ 367 (1171)
+|....+.. ++++..++.+.++.
T Consensus 222 at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 222 ATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 898777665 56655566666654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.64 E-value=8.9e-10 Score=118.44 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=51.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-------
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM------- 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~------- 858 (1171)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++...++.
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 3788888665521 466666 89999999999999999999999999999999999988443322
Q ss_pred -HHhhheEEEcCC
Q 001055 859 -DLRKILGIIPQS 870 (1171)
Q Consensus 859 -~~r~~i~~v~Q~ 870 (1171)
..+..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 235679999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-10 Score=119.63 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=87.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCEecCC-CChHHHhhheEEEcCCc------cccc
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIV---ELERGRILI--------DGFDIAK-FGLMDLRKILGIIPQSP------VLFS 875 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~ 875 (1171)
+.+++|+|++||||||+.++|.+.+ .++.|.+.. +|.++.. ....++++.+++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 788999887 6776642 34456788899999876 3344
Q ss_pred ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc
Q 001055 876 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952 (1171)
Q Consensus 876 ~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs 952 (1171)
.++.+++. ++++..++..+..++.+.....+..+.+ ...+.-++|+ .++++++.+++++|+.+++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 46666543 4567777777777776665443333222 1233445665 34556667778777776653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-11 Score=132.39 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=85.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC----Cccc------eecCcEEEEecCC-CCC-cccHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----DASA------VIRGTVAYVPQVS-WIF-NATVRDN 246 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~----g~~~------~~~~~i~~v~Q~~-~l~-~~Tv~en 246 (1171)
.+++++++.+++| ++|+||||||||||+++|+|+..+.. |... .....+++++|.+ ... ..++.||
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~De 111 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDE 111 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeeh
Confidence 4789999999999 99999999999999999999987621 1000 0011355666654 222 3455555
Q ss_pred HhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC---------
Q 001055 247 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS--------- 317 (1171)
Q Consensus 247 i~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts--------- 317 (1171)
|......... .. .....+. +......|||||+||+.+++|+..+|++| |||+.
T Consensus 112 id~~~~~r~~---~~--~~~~~~~-----------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i 173 (274)
T 2x8a_A 112 VDALCPRRSD---RE--TGASVRV-----------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTL 173 (274)
T ss_dssp CTTTCC--------------CTTH-----------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEE
T ss_pred hhhhhcccCC---Cc--chHHHHH-----------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEE
Confidence 5432111000 00 0001111 11122479999999999999999999985 99974
Q ss_pred ---CCCHHHHHHHHHHHH
Q 001055 318 ---ALDAHVGRQVFDRCI 332 (1171)
Q Consensus 318 ---~LD~~~~~~l~~~l~ 332 (1171)
--|...+..|++.+.
T Consensus 174 ~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 174 FVGLPPPADRLAILKTIT 191 (274)
T ss_dssp ECCSCCHHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHHHHH
Confidence 237888888887654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=6e-09 Score=114.48 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=68.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEecC-CCChHHHhhheEEEcCCc------cc
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRIL--------IDGFDIA-KFGLMDLRKILGIIPQSP------VL 873 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 873 (1171)
++|++++|+|||||||||++++|+ |+..|++|.|. .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 455778899999999754 34
Q ss_pred ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHH
Q 001055 874 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906 (1171)
Q Consensus 874 f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i 906 (1171)
+..++.+|+.. .++..+.........+
T Consensus 105 ~~~~v~~~i~~------~~v~~~~s~~~~~~~v 131 (252)
T 4e22_A 105 EGEDVSNEIRT------ETVGNTASQAAAFPRV 131 (252)
T ss_dssp TTEECTTGGGS------HHHHHHHHHHTTSHHH
T ss_pred CCeehhHHHHH------HHHHHHHHHhcccHHH
Confidence 45577777642 3444444444333333
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-08 Score=112.68 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=67.5
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHH
Q 001055 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 263 (1171)
Q Consensus 184 isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~ 263 (1171)
+++..++|++++|+|+|||||||++..|+|.+.+..+ +|.++..++. .....+++ ....+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-------kV~lv~~D~~--r~~a~eqL-----------~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-------SVVLAAADTF--RAAAIEQL-----------KIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEEECTT--CHHHHHHH-----------HHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-------EEEEEccccc--cHHHHHHH-----------HHHHH
Confidence 3555678999999999999999999999999977533 3555555532 11111111 11111
Q ss_pred HcCchHHHhcCCCCCccccCCCCCccChHHHHHH---HHHHHhccCCCEEEEeCcCC
Q 001055 264 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV---SMARAVYSNSDVFIFDDPLS 317 (1171)
Q Consensus 264 ~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv---~LAraL~~~~~vllLDEpts 317 (1171)
..++ + .+ ..+|||+.+++ +|++++..+||++|+|+|..
T Consensus 157 ~~gl-------~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 157 RVGA-------T-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTC-------E-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HcCC-------c-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1111 1 11 24689999999 99999999999999999974
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4.1e-09 Score=125.79 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhcc
Q 001055 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 883 (1171)
Q Consensus 806 ~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g--~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~ 883 (1171)
.+++++.++..+.|.|+|||||||++++|.. ++.++.|++.+.+.|.+......+.. -|.++. +|..|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999999886 66777899988888876533222211 111111 11111
Q ss_pred CCCCCCHHHHHHHHHHhc-----HHHHHHHccCCcchhhh---cCCCCCChhHHHHH----------HHHHHhccCCC-E
Q 001055 884 PFSEHSDADLWEALERAH-----LKDAIRRNSLGLDAQVS---EAGENFSVGQRQLL----------SLSRALLRRSK-I 944 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~-----~~~~i~~lp~gl~~~~~---~~~~~LSgGqkqrl----------~lArall~~p~-i 944 (1171)
.++..++++.+. =.+.+.. .|.....+ .....+||||+|+. ++|+++...|. +
T Consensus 229 ------~~~a~~~L~~~~~EmerR~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 ------MKDAANALRWCVNEMERRYKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 111112221100 0122222 12211111 01123788887753 35677778898 7
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHH----c-CCcEEEEEecChh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREE----F-KSCTMLIIAHRLN 983 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~----~-~~~tvi~vtH~~~ 983 (1171)
+++||++.-+|.. ...+.+.|.++ . .|.++|++|||.+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988743 23344444332 2 2779999999987
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-10 Score=126.66 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=92.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
.+++++.+.|.. +.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++........++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 345666666643 25899999999999 99999999999999999999875 7999999877654444445566778
Q ss_pred EcCCcc-ccc-ccHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 867 IPQSPV-LFS-GTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 867 v~Q~~~-lf~-~tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|... .+. .++.++++..... ..++..+. +.+++ ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 222 2455555321100 00111111 11111 2478999999999999
Q ss_pred hccCCCEEEEecCC
Q 001055 938 LLRRSKILVLDEAT 951 (1171)
Q Consensus 938 ll~~p~iLlLDEpT 951 (1171)
+..+|++ ||++.
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999986 56544
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=112.70 Aligned_cols=177 Identities=11% Similarity=0.130 Sum_probs=107.9
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHHhhhe-EEEcCCcccccccHH
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKIL-GIIPQSPVLFSGTVR 879 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~tv~ 879 (1171)
+.|+++...+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...++.++ +....-+. ..++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~---~~l~ 264 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINA---QNLR 264 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCH---HHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCH---HHHh
Confidence 478888888999999999999999999999999988776555 56655432 3445544432 11100000 0111
Q ss_pred hhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCH-
Q 001055 880 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDV- 956 (1171)
Q Consensus 880 ~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~- 956 (1171)
. ...++++.....+. .+.+...|. .+.. ...+|.+|.+ +.+|.+. .+|+++++|+++...+.
T Consensus 265 ~-----g~l~~~~~~~~~~a---~~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 265 T-----GKLTPEDWGKLTMA---MGSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp T-----SCCCHHHHHHHHHH---HHHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred c-----CCCCHHHHHHHHHH---HHHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 1 12233333222221 112222221 1222 2468999876 5667666 57999999999987743
Q ss_pred -------HHHHHHHHHHHHHc--CCcEEEEEec---------C--hh--------hhhh-cCEEEEEeCcEE
Q 001055 957 -------RTDALIQKTIREEF--KSCTMLIIAH---------R--LN--------TIID-CDRILLLDSGRV 999 (1171)
Q Consensus 957 -------~t~~~i~~~l~~~~--~~~tvi~vtH---------~--~~--------~~~~-~d~i~vl~~G~i 999 (1171)
.....+.+.|+.+. .+++||+++| + +. .+.. ||.|+.|..++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23345566666554 3799999999 2 22 3444 999999987654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-09 Score=124.93 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=87.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCC-------CEEEEEcCCCccHHHHHHHHhcCC----CCCCCccce-------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVG-------SLVAIVGGTGEGKTSLISAMLGEL----PPVSDASAV------- 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~G-------e~v~lvG~nGsGKSTLl~~l~G~~----~~~~g~~~~------- 224 (1171)
++.++++..|. .+.+++++++.+++| +.++|+||||+|||||+++|+|++ .+++|....
T Consensus 19 lr~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 33445555554 246899999999877 899999999999999999999988 555554321
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCC-CC--C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGS-AF--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.+..|.+++|.+.+.. ++.|++.... .. + .....+.+ . ..++.-...........||+|
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i-----~---~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSI-----R---IDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEEEESCGGGSCHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccc-----c---ccCCCeEEEEecCCcccCCHH
Confidence 2346999999887765 7888774210 00 0 00000000 0 011110000012334589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
+|||++++ .+||+.+...+.+.+.+
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHH
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHH
Confidence 99998654 66777777777765544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-08 Score=122.99 Aligned_cols=155 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-ceEEECCEecCCCChHHHhhheEEEcCCc---------
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDGFDIAKFGLMDLRKILGIIPQSP--------- 871 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 871 (1171)
.+++++++.+.+|+.++|+||||+|||||+++|++++.+.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 8888887665443 34588887764
Q ss_pred -------------ccc-cccHHhhccCCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 872 -------------VLF-SGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 872 -------------~lf-~~tv~~nl~~~~~~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
..+ ..++.+|+...+.. ....+... ......+++... +.. ......+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~~-~~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RHD-PFQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CCC-CC----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Eec-hhhcCCccccccccccCce
Confidence 111 11344444211000 00000000 000111111111 000 0112359999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~ 968 (1171)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999999975
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.1e-07 Score=104.45 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=81.0
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccH
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATV 243 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv 243 (1171)
.++++++.|+.. . ++++|+ +|++++++|+||+||||++..|+|.+.+..| ++.++..++.- ..++
T Consensus 78 ~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-------~v~l~~~d~~~-~~~~ 142 (295)
T 1ls1_A 78 VYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAADTQR-PAAR 142 (295)
T ss_dssp HHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-------CEEEEECCSSC-HHHH
T ss_pred HHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCCccc-HhHH
Confidence 344555556421 1 577887 8999999999999999999999999876543 35555555421 1111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc-CCCCCHH
Q 001055 244 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP-LSALDAH 322 (1171)
Q Consensus 244 ~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp-ts~LD~~ 322 (1171)
+ ......+..+ +..++.+ ..-...+-+|.+|+++...++|++|+|+| ++++|..
T Consensus 143 -~-----------ql~~~~~~~~----l~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 143 -E-----------QLRLLGEKVG----VPVLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp -H-----------HHHHHHHHHT----CCEEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred -H-----------HHHHhcccCC----eEEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 1 0111111111 1111110 11234455789999998899999999999 9999998
Q ss_pred HHHHHHHH
Q 001055 323 VGRQVFDR 330 (1171)
Q Consensus 323 ~~~~l~~~ 330 (1171)
....+...
T Consensus 198 ~~~~l~~~ 205 (295)
T 1ls1_A 198 LMGELARL 205 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-07 Score=101.88 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=86.9
Q ss_pred Cceeee-eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHh-cCCCCCHH
Q 001055 179 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPA 256 (1171)
Q Consensus 179 ~~l~~i-sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~ 256 (1171)
+.|+.+ .-.+++|++++|+||||||||||+..++....+. .+.+.|+.-+.. ...+.+.+. +|.. .+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-------~~~v~~~~~e~~--~~~~~~~~~~~g~~--~~ 78 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-------GEPGIYVALEEH--PVQVRQNMAQFGWD--VK 78 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSSC--HHHHHHHHHTTTCC--CH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccCC--HHHHHHHHHHcCCC--HH
Confidence 457776 6789999999999999999999966554432221 123566654432 112223222 2211 11
Q ss_pred HHHHHHHHcCchHHHhcCCC--CCccccCCCCCccChHHHHHHHHHHHhc--cCCCEEEEeCcCCCC--CHHHHHHHHHH
Q 001055 257 RYEKAIDVTSLQHDLDLLPG--GDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSAL--DAHVGRQVFDR 330 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~LSGGqrqRv~LAraL~--~~~~vllLDEpts~L--D~~~~~~l~~~ 330 (1171)
.+. ..-.+. ..+.... +.....+.....-+....+....++.++ .+|+++++|+|++.+ |+...+..+..
T Consensus 79 ~~~---~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~ 154 (247)
T 2dr3_A 79 PYE---EKGMFA-MVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQ 154 (247)
T ss_dssp HHH---HHTSEE-EEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHH
T ss_pred HHh---hCCcEE-EEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHH
Confidence 110 000000 0000000 0000000000000112223333333333 579999999999988 65444444444
Q ss_pred HHhh-ccCCCEEEEEcCCcch--------h-hhcCEEEEEeC
Q 001055 331 CIRG-ELSGKTRVLVTNQLHF--------L-SQVDRIILVHE 362 (1171)
Q Consensus 331 l~~~-~~~~~tvi~vtH~~~~--------l-~~~d~i~~l~~ 362 (1171)
+.+. ...|.|+|+++|.... + ..+|.++.|+.
T Consensus 155 l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 155 LKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5443 3458999999998764 2 34799999874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.5e-08 Score=120.07 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=96.3
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCC
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 885 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~ 885 (1171)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.+..+.+.++.+++.+|...++..+++.||...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457789999999999999999999999987665 67998 788889888888888899999999988877887777421
Q ss_pred CCCCH--HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHH
Q 001055 886 SEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963 (1171)
Q Consensus 886 ~~~~~--~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~ 963 (1171)
..+.+ .++. ..+-..+.-++++| |+.++++.++..+.
T Consensus 82 pG~~~f~~~~~----------------------------------------~~l~~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIR----------------------------------------GALEAADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHH----------------------------------------HHHHHCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHH----------------------------------------HHHhhcCcEEEEEc-CCcccchhHHHHHH
Confidence 11111 1111 11112355688888 99999998885544
Q ss_pred HHHHHHcCCcEEEEEecChhhh
Q 001055 964 KTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 964 ~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
.+ .. .+.++|++.|.++..
T Consensus 121 ~~-~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VA-ER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH-HH--TTCCEEEEEECGGGC
T ss_pred HH-HH--ccCCEEEEecCCchh
Confidence 43 33 467788888887753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-09 Score=122.16 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=51.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEe-------------------cCCCEEEEEcCCCccHHHHHHHHhcCCC--CCCC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDI-------------------PVGSLVAIVGGTGEGKTSLISAMLGELP--PVSD 220 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i-------------------~~Ge~v~lvG~nGsGKSTLl~~l~G~~~--~~~g 220 (1171)
.|+++|+++.|. ++++++++.+ ++|+++||+|+||||||||+++|+|+++ |++|
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 488999999993 5899999988 9999999999999999999999999988 8877
Q ss_pred ccc
Q 001055 221 ASA 223 (1171)
Q Consensus 221 ~~~ 223 (1171)
.+.
T Consensus 112 ~i~ 114 (308)
T 1sq5_A 112 RVE 114 (308)
T ss_dssp CEE
T ss_pred eEE
Confidence 643
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-08 Score=112.28 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=41.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCcEEEEecCCCCC-----cccHHHH
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGTVAYVPQVSWIF-----NATVRDN 246 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~i~~v~Q~~~l~-----~~Tv~en 246 (1171)
+++.+|++++|+|+||+|||||+++|+|..+|.+|.+.. .+..+||++|.|.+. ..|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 667899999999999999999999999999988775432 011169999999763 3588 88
Q ss_pred Hh
Q 001055 247 IL 248 (1171)
Q Consensus 247 i~ 248 (1171)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.1e-07 Score=112.61 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=41.8
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 224 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~ 224 (1171)
++|+++||++++ ++++|+||||||||||+++|+|+++|++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 489999999999 999999999999999999999999999886543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.43 E-value=9e-09 Score=127.40 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=91.9
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------cCcEEEEecCC-------------
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQVS------------- 236 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q~~------------- 236 (1171)
..+++++++.+.+|+.++|+||||||||||+++|+|.+++..++.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999998876433222 23477877653
Q ss_pred ---------CCC-cccHHHHHhcCCCCCH-HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc
Q 001055 237 ---------WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305 (1171)
Q Consensus 237 ---------~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~ 305 (1171)
|.+ ..++.+|+..++.... ..+.. .........+..... -......+|+|++|++..++....
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~a 200 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHRA 200 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHHT
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHhcCceEEe-----chhhcCCccccccccccCceeeec
Confidence 222 2344444433211000 00000 000000111111100 011224699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCI 332 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~ 332 (1171)
++.+|+|||+.. |++.....+.+.+.
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred CCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 999999999988 89998888877654
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.42 E-value=6e-08 Score=109.34 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=62.6
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------e-cCcEEEEecCCC-------------
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I-RGTVAYVPQVSW------------- 237 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~-~~~i~~v~Q~~~------------- 237 (1171)
|++.+|++++|+||||||||||+++|+|+.+|++|.+.. . ...+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999998876442 0 124899999984
Q ss_pred ---CC-cccHHHHHhcCCC----CCHHHHHHHHHHcCch-HHHhcCC
Q 001055 238 ---IF-NATVRDNILFGSA----FEPARYEKAIDVTSLQ-HDLDLLP 275 (1171)
Q Consensus 238 ---l~-~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~-~~~~~~~ 275 (1171)
+| ..|+ +|+.|+.- ....++.++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 23 5688 99988521 1234677788888884 4444444
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-08 Score=105.20 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=43.5
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--Cccc------eecCcEEEEecCCCCC-cccHHHHHh
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASA------VIRGTVAYVPQVSWIF-NATVRDNIL 248 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~--g~~~------~~~~~i~~v~Q~~~l~-~~Tv~eni~ 248 (1171)
|+++++|++++|+||||||||||+++|+|.++... +... ..+..++|++|++.+| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974211 1000 0123588999998766 456666654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.5e-07 Score=98.99 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHH
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~ 969 (1171)
...|++++.+|+++++| ||++|......+.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999888887663
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6.7e-09 Score=120.04 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=87.6
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+..-+ . +...++..+|++||...++ .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999986 468776511 1 1122344588899987543 222
Q ss_pred ccCCCC----C-CHHHHHHHHHHhcHHHHHHH---------ccCCcc-----hhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 882 LDPFSE----H-SDADLWEALERAHLKDAIRR---------NSLGLD-----AQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 882 l~~~~~----~-~~~~i~~~l~~~~~~~~i~~---------lp~gl~-----~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++.... . ....+. ....+.+.+.. .|..++ -.++.....+++|.+||+..+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 222111 0 000110 11122233320 011111 1234455679999999999998899999
Q ss_pred CEEE-EecCCc
Q 001055 943 KILV-LDEATA 952 (1171)
Q Consensus 943 ~iLl-LDEpTs 952 (1171)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999998
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.8e-08 Score=103.58 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=23.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHh-cCCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPP 217 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~-G~~~~ 217 (1171)
...+++||++++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.32 E-value=6.2e-07 Score=107.05 Aligned_cols=167 Identities=10% Similarity=0.072 Sum_probs=101.7
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHH------------
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN------------ 246 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~en------------ 246 (1171)
+.|+++...+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-. ...+.+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMS--AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSC--HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCC--HHHHHHHHHHHHcCCCHHH
Confidence 468888888999999999999999999999999987644322 24666664421 0112221
Q ss_pred HhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc--cCCCEEEEeCcCCCCCH---
Q 001055 247 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSALDA--- 321 (1171)
Q Consensus 247 i~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~--~~~~vllLDEpts~LD~--- 321 (1171)
+.-| ....+.+.++.+..+ .+...+ . .+.+ ...+|++|.+ +.+|.+. .+|+++++|+++...++
T Consensus 263 l~~g-~l~~~~~~~~~~a~~---~l~~~~---l-~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 263 LRTG-KLTPEDWGKLTMAMG---SLSNAG---I-YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTS-CCCHHHHHHHHHHHH---HHHSSC---E-EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HhcC-CCCHHHHHHHHHHHH---HHhcCC---E-EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 1112 122333332222211 111111 1 1111 2478999986 5666665 68999999999998743
Q ss_pred -----HHHHHHHHHHHhhcc-CCCEEEEEcC---------C--cc--------hhh-hcCEEEEEeCCE
Q 001055 322 -----HVGRQVFDRCIRGEL-SGKTRVLVTN---------Q--LH--------FLS-QVDRIILVHEGM 364 (1171)
Q Consensus 322 -----~~~~~l~~~l~~~~~-~~~tvi~vtH---------~--~~--------~l~-~~d~i~~l~~G~ 364 (1171)
.....+...|....+ .+.++|+++| + +. .+. .||.|+.|+.+.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 223455555554433 3789999999 2 22 233 379999998764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.27 E-value=8.3e-07 Score=101.88 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=82.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 266 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 266 (1171)
.+++|+++.|.||+|||||||+..++...... .+.+.|+.-+..+ +.. + .+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~---------------~~~-~---a~~lG 110 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHAL---------------DPE-Y---AKKLG 110 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCC---------------CHH-H---HHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCc---------------CHH-H---HHHcC
Confidence 68899999999999999999988887654322 2346777665321 111 0 11112
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC--CCEEEEeCcCCCC----------CH---HHHHHHHHHH
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN--SDVFIFDDPLSAL----------DA---HVGRQVFDRC 331 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~--~~vllLDEpts~L----------D~---~~~~~l~~~l 331 (1171)
.. .+.+. +-. ..++ .+-+.+++++..+ |+++++|+|++.+ |+ ...+.+.+.+
T Consensus 111 ~~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 111 VD--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp CC--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred CC--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 11 00000 000 1133 3346678888755 9999999999998 33 1112222222
Q ss_pred Hhh----ccCCCEEEEEcCCcch----------------hh-hcCEEEEEeCCEEEEe
Q 001055 332 IRG----ELSGKTRVLVTNQLHF----------------LS-QVDRIILVHEGMVKEE 368 (1171)
Q Consensus 332 ~~~----~~~~~tvi~vtH~~~~----------------l~-~~d~i~~l~~G~i~~~ 368 (1171)
.+. ...+.|+|+++|-..- +. .||.++.++.+++...
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~ 235 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD 235 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeec
Confidence 222 2348999999996541 33 3688888877665443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-07 Score=96.17 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=58.5
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHHhhheEEEcCCccccc
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 875 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 875 (1171)
+...+|+.++|+||||||||||++.|.+.++ |..|+ ++|++..-++...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 77887 789988888888888876 58888888
Q ss_pred ccHHhhc
Q 001055 876 GTVRFNL 882 (1171)
Q Consensus 876 ~tv~~nl 882 (1171)
.++..|+
T Consensus 89 ~~~~~n~ 95 (197)
T 3ney_A 89 GSYQGNM 95 (197)
T ss_dssp EEETTEE
T ss_pred hhhhcee
Confidence 8998885
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-07 Score=112.47 Aligned_cols=158 Identities=12% Similarity=0.081 Sum_probs=80.1
Q ss_pred eeeEEecCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCccce--ec-CcE--EEEecCCCCCcccHHHHHhcCCCCCH
Q 001055 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAV--IR-GTV--AYVPQVSWIFNATVRDNILFGSAFEP 255 (1171)
Q Consensus 183 ~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G--~~~~~~g~~~~--~~-~~i--~~v~Q~~~l~~~Tv~eni~~g~~~~~ 255 (1171)
.+++++.+|..++|.|.+||||||+++.|.. .+.++.+.+.. +. +.. .....-|++.. +|. .+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vv--------td~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVV--------TDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCB--------CSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eee--------cCH
Confidence 4788999999999999999999999999876 33333232211 10 000 00000111110 111 111
Q ss_pred HHHHHHHHHcC--ch---HHHhcCCCCCccccCC-CCCccChHHHHHH----------HHHHHhccCCC-EEEEeCcCCC
Q 001055 256 ARYEKAIDVTS--LQ---HDLDLLPGGDVTEIGE-RGVNISGGQKQRV----------SMARAVYSNSD-VFIFDDPLSA 318 (1171)
Q Consensus 256 ~~~~~~~~~~~--l~---~~~~~~~~~~~~~i~~-~g~~LSGGqrqRv----------~LAraL~~~~~-vllLDEpts~ 318 (1171)
+...++++++. +. +.+....-.+.....+ ....+||||+||. ++|+++...|. ++++||+++.
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 11111111110 00 1111111000000000 0124788887652 35677788898 8999999998
Q ss_pred CCHHH--HHHHHHHHHhhcc-CCCEEEEEcCCcc
Q 001055 319 LDAHV--GRQVFDRCIRGEL-SGKTRVLVTNQLH 349 (1171)
Q Consensus 319 LD~~~--~~~l~~~l~~~~~-~~~tvi~vtH~~~ 349 (1171)
+|... ...++..+.+..+ .|.++|++||++.
T Consensus 310 l~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 87432 2233333333333 3889999999987
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.8e-07 Score=97.28 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=43.3
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcc
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 872 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 872 (1171)
..+-.++.++|++++|+|||||||||++++|.+.+ |.+.++|.++... ....+..+++++|++.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 33334667899999999999999999999999987 8999998777421 1122335678887753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-06 Score=102.87 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=80.0
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
..++++++.+++| +.|+||+|+|||||++++++..... -+. .+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~-----------------------------is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFH-----------------------------ISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEE-----------------------------EEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eee-----------------------------CCHHHH
Confidence 3567777777877 8899999999999999999853210 000 111111
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCC----------
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---------- 951 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT---------- 951 (1171)
...+ .| .|++++|-.+++|....|.||++||+.
T Consensus 86 ~~~~-------------------------~g------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VELF-------------------------VG------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTCC-------------------------TT------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHHH-------------------------hc------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 1110 00 267888899999999999999999994
Q ss_pred cCCCHHHHHHHHHHHHHHc-----CCcEEEEEecChhhhh-------hcCEEEEE
Q 001055 952 AAVDVRTDALIQKTIREEF-----KSCTMLIIAHRLNTII-------DCDRILLL 994 (1171)
Q Consensus 952 s~LD~~t~~~i~~~l~~~~-----~~~tvi~vtH~~~~~~-------~~d~i~vl 994 (1171)
.+.|....+.+.+.+..+- .+..||.+||+.+.++ ++|+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 3667666666666665431 3568899999986653 25665544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.6e-07 Score=94.77 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=43.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEE----------CCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILI----------DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
.+|++++|+||||||||||+++|.+.+++ ..|.|.. +|.+....+...+++. +.|+..++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999864 4455543 3444333444444432 33444555555555
Q ss_pred h
Q 001055 881 N 881 (1171)
Q Consensus 881 n 881 (1171)
|
T Consensus 80 n 80 (180)
T 1kgd_A 80 A 80 (180)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-06 Score=100.78 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=74.3
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
.++++++.+++| +.|+||+|+|||||++++++.... .+-++. ..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~f~~is---------~~~~~------------ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------PFFHIS---------GSDFV------------ 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------CEEEEE---------GGGTT------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------CeeeCC---------HHHHH------------
Confidence 566777777877 889999999999999999986421 011111 00000
Q ss_pred HHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC----------CCCCHHHHHHHHH
Q 001055 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL----------SALDAHVGRQVFD 329 (1171)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt----------s~LD~~~~~~l~~ 329 (1171)
..+ +| .|++++|-.+++|....|.|+++||+- ++.|+...+.+.+
T Consensus 87 ------------~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 87 ------------ELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp ------------TCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred ------------HHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 000 11 278899999999999999999999994 3566665544443
Q ss_pred HHHhh----ccCCCEEEEEcCCcchhh
Q 001055 330 RCIRG----ELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 330 ~l~~~----~~~~~tvi~vtH~~~~l~ 352 (1171)
.+... ...+..+|.+||+++.++
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHhccCCCCCEEEEEecCChhhhc
Confidence 33221 123567888999987765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-07 Score=102.10 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=35.9
Q ss_pred cEEEEee-EEEeCCCCCCcceeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 786 SIKFEDV-VLRYRPELPPVLHGLSFTIPP---SDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 786 ~i~~~~v-s~~y~~~~~~~l~~vs~~i~~---Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.++++|+ +|+|++. .++|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4899999 9999322 3799999999999 9999999999999999999999865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.1e-09 Score=114.72 Aligned_cols=118 Identities=22% Similarity=0.219 Sum_probs=72.8
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------cCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~~v 232 (1171)
++++.+.|. ...+++++++.+++| ++|+||||||||||+++|+|... .+.+... ...++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 455555553 235899999999999 99999999999999999999875 2221110 1124555
Q ss_pred ecCCC-C-CcccHHHHH-hcCCCCC------HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 233 PQVSW-I-FNATVRDNI-LFGSAFE------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 233 ~Q~~~-l-~~~Tv~eni-~~g~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
+|... . ...++.|+| .++.... .+...+. +..+ ...|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~l-----------l~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQL-----------LVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHHH-----------HHHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHHH-----------HHHHhCCCCCCCEEEEEe
Confidence 55542 2 234555555 2221100 0011111 1111 126899999999999999
Q ss_pred ccCCCE
Q 001055 304 YSNSDV 309 (1171)
Q Consensus 304 ~~~~~v 309 (1171)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999876
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.2e-07 Score=101.46 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcEEEEee-EEEcCCCCCCCceeeeeEEecC---CCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 161 PAISIRNG-YFSWDSKAERPTLLNINLDIPV---GSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 161 ~~i~~~~~-s~~~~~~~~~~~l~~isl~i~~---Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.++++|+ +|+|. .+.++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 99993 245799999999999 9999999999999999999999865
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-06 Score=101.33 Aligned_cols=143 Identities=23% Similarity=0.224 Sum_probs=82.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------CCCceEEECCEecCCCChHHHhhheEEEcCCccc----ccccHHh
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE-----------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL----FSGTVRF 880 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~tv~~ 880 (1171)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.+.|.- |..|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999865 67799999987652 22345666654421 2222221
Q ss_pred -----hccC-CC-CCCHHHHHHHHHHhcHHHHHHHcc-CCc-chhhhcCCCCCChhHHHHHHHH----HHh-ccCCCEEE
Q 001055 881 -----NLDP-FS-EHSDADLWEALERAHLKDAIRRNS-LGL-DAQVSEAGENFSVGQRQLLSLS----RAL-LRRSKILV 946 (1171)
Q Consensus 881 -----nl~~-~~-~~~~~~i~~~l~~~~~~~~i~~lp-~gl-~~~~~~~~~~LSgGqkqrl~lA----ral-l~~p~iLl 946 (1171)
.+.+ ++ ........+.++. ..+.+..+. .+. --.+......+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1111 11 1111111111111 122333321 111 1122344556888888888877 666 444554
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHc
Q 001055 947 LDEATAAVDVRTDALIQKTIREEF 970 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~ 970 (1171)
+|+|++|......+.+.|.+..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887643
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-07 Score=100.39 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=46.1
Q ss_pred eeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE--EECCEecC
Q 001055 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI--LIDGFDIA 853 (1171)
Q Consensus 791 ~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I--~i~g~~i~ 853 (1171)
|++..++. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ .++|.++.
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45554433 257788888889999999999999999999999999988 78988 88876553
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.5e-08 Score=114.35 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=95.0
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++++...|.. +.+++++++.+++| +.|+||+|+|||||+++|++... .|.|.++|.++........++++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34555545543 25889999999999 99999999999999999999875 78999999887665445556677788
Q ss_pred cCCcc-cccc-cHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 868 PQSPV-LFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 868 ~Q~~~-lf~~-tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|... .... .+.++++..... ..++..+.+ .+++. .||||++|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEe
Confidence 88764 2222 455666432210 112222211 12221 3788999999999999
Q ss_pred ccCCCEEEEecCCc
Q 001055 939 LRRSKILVLDEATA 952 (1171)
Q Consensus 939 l~~p~iLlLDEpTs 952 (1171)
.++|++ ||||..
T Consensus 176 tn~p~~--LD~aLl 187 (499)
T 2dhr_A 176 TNRPDI--LDPALL 187 (499)
T ss_dssp CSCGGG--SCTTTS
T ss_pred cCChhh--cCcccc
Confidence 999987 898875
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.10 E-value=9e-07 Score=93.46 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=40.3
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccc
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 873 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 873 (1171)
++|++|++++|+|||||||||++++|.+.+.|+.| +.+ +....... ...+..++|++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 212 22222111 1122347777777643
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.5e-07 Score=100.91 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=54.5
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHH-----hhheEEE-cCC
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL-----RKILGII-PQS 870 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~ 870 (1171)
++++++|++++|++++|+|+||+||||++..|++.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888899999999999999999999999999999999999999888754321 223 4567888 554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.2e-06 Score=95.76 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=44.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHHhhheEEEcCCc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSP 871 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~ 871 (1171)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... ...+.+++|+.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhh
Confidence 588999999999999999999999999988877865 66654322 122445677766654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=2.2e-06 Score=90.62 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh---hhcCEEEEEeC
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI---IDCDRILLLDS 996 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~---~~~d~i~vl~~ 996 (1171)
.+.|+.+|..+++.+..+|..+-.+ ++.++|...+.+.+.+... .+.++|+.+|.+.+. ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4678999999999998888644332 4456777777777766543 356888889988664 34999988853
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-06 Score=88.92 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
+.+.+|++|+.+|+++++| ||++|......+++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999987654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.8e-07 Score=99.01 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=40.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~ 222 (1171)
.++++|++..+. . +|++.+ ++++|+||||||||||+++|+|.++|++|.+
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 477888755442 1 566666 8999999999999999999999999998754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7.6e-06 Score=94.56 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=31.9
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCcc
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDAS 222 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G--~~~~~~g~~ 222 (1171)
..+|++++++++ .++|||++|||||||++.|+| .+++.+|.+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 358999999999 999999999999999999999 556555543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.01 E-value=5e-06 Score=105.30 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEecCCc-CCCHHHHHHHHHHHHHHcCC-cEEEE-EecChhhhhh-cC
Q 001055 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKS-CTMLI-IAHRLNTIID-CD 989 (1171)
Q Consensus 922 ~~LSgGqkqrl~lArall~~p~iLlLDEpTs-~LD~~t~~~i~~~l~~~~~~-~tvi~-vtH~~~~~~~-~d 989 (1171)
.-+|+|+.+|..+++.++.+++++|+|||.. ++|.+....+.+.+.....+ +++++ .||+.+.+.. ++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3588999999999999999999999999996 99988777777777666544 56666 4898877655 44
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-06 Score=92.23 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=38.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 876 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 876 (1171)
++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 678899999999999999999999999874 37888999888765
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.3e-06 Score=110.61 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=85.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC-CCcccHHHHHhcCCCCCHHHHHHHHHHc
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 265 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~-l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 265 (1171)
.+..|+.++|+||+||||||++.++++...+..|. ...+.++ | |. .....+.+.+ .+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~----g~~ilvl-~-P~r~La~q~~~~l--------------~~~~ 164 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE----NTQVACT-Q-PRRVAAMSVAQRV--------------AEEM 164 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG----TCEEEEE-E-SCHHHHHHHHHHH--------------HHHT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC----CceEEec-C-chHHHHHHHHHHH--------------HHHh
Confidence 35678999999999999999999887765443320 1112222 1 11 0000111111 1111
Q ss_pred Cch--HHHh-cCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHhhccCCCEE
Q 001055 266 SLQ--HDLD-LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTR 341 (1171)
Q Consensus 266 ~l~--~~~~-~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~~~~~~~tv 341 (1171)
+.. .... .........-+....-+|+|+.+|..+++.++.+++++|+|||.. +||......++..+.......+++
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 100 0000 000000000112234689999999999999999999999999997 899887766666665444345677
Q ss_pred EE-EcCCcchhh
Q 001055 342 VL-VTNQLHFLS 352 (1171)
Q Consensus 342 i~-vtH~~~~l~ 352 (1171)
++ .||+.+.+.
T Consensus 245 l~SAT~~~~~l~ 256 (773)
T 2xau_A 245 IMSATLDAEKFQ 256 (773)
T ss_dssp EEESCSCCHHHH
T ss_pred EEeccccHHHHH
Confidence 77 599877654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.1e-06 Score=86.62 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=34.5
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+++++++.+| +++|+||||||||||+++|.+.+.+..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6789999999 9999999999999999999998877654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-07 Score=99.86 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC---CCCCCccce---------------------ecCcEEEEecCC------CCCc
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGEL---PPVSDASAV---------------------IRGTVAYVPQVS------WIFN 240 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~---~~~~g~~~~---------------------~~~~i~~v~Q~~------~l~~ 240 (1171)
+.+++|+|++||||||++++|++.+ .+++|.... +...+++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 455443221 122367777765 2345
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCcccc-CCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI-GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 241 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i-~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
.+|.+++. .+++..++..+.....+.....+..+.+ ..++.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 57777763 2334444444444433322111111111 1234456665 3555677788888887764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-06 Score=90.45 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=47.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE--ecCCCChH----HHhhheEEEcCCc
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF--DIAKFGLM----DLRKILGIIPQSP 871 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~--~i~~~~~~----~~r~~i~~v~Q~~ 871 (1171)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-..... ..+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7889999999 99999999999999999999998887775433221 11111100 1344688888886
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.96 E-value=3e-06 Score=89.21 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=24.9
Q ss_pred EcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 171 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 171 ~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|+.++..+.++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455555678999999999999999999999999999999999765
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=92.58 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
++.+++++|++|+||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999889998866654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=91.26 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=74.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHH
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 270 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~ 270 (1171)
-.++++|++|+|||||++.|+|......+.... ..-.++.++++..- +.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~---------------------- 217 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR--------YQ---------------------- 217 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE--------EE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce--------EE----------------------
Confidence 378999999999999999999975321111000 01123444332110 00
Q ss_pred HhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEe-CcCCCCCHHHHHHHHHHHHhhccCCCEEEEEc--CC
Q 001055 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD-DPLSALDAHVGRQVFDRCIRGELSGKTRVLVT--NQ 347 (1171)
Q Consensus 271 ~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLD-Epts~LD~~~~~~l~~~l~~~~~~~~tvi~vt--H~ 347 (1171)
+-..|+.. ......+|+|++|++. +.+...++-++++| +|.+++|......+++.+.... .++.+|+|. ||
T Consensus 218 l~Dt~G~~----~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~D 291 (357)
T 2e87_A 218 IIDTPGLL----DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKID 291 (357)
T ss_dssp EEECTTTS----SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTT
T ss_pred EEeCCCcc----ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcc
Confidence 00011111 1123468999998886 55555777789999 9999999988777776655432 267788887 66
Q ss_pred c
Q 001055 348 L 348 (1171)
Q Consensus 348 ~ 348 (1171)
+
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=90.95 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEe-cCCcCCCHHHHHHHHHHHHHHcCCcEEEEEe--cChh
Q 001055 922 ENFSVGQRQLLSLSRALLRRSKILVLD-EATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLN 983 (1171)
Q Consensus 922 ~~LSgGqkqrl~lArall~~p~iLlLD-EpTs~LD~~t~~~i~~~l~~~~~~~tvi~vt--H~~~ 983 (1171)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....+..+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 458999998876 55555666788999 9999999999888888887765577888888 7764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-06 Score=93.38 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=45.7
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC------ChHH----HhhheEEEcCCcccc
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------GLMD----LRKILGIIPQSPVLF 874 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf 874 (1171)
.+.++|++++|+|+|||||||++++|.|. +|+|.+.+.++... .... .++.+++++|.+.++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 34578999999999999999999999998 78999998775321 1111 134567777766544
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.78 E-value=9.6e-06 Score=85.46 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=29.3
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+++++|++++|+|||||||||++++|+|.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999966543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.7e-06 Score=94.77 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=45.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCccc--------e-------------ecCcEEEEecCC------CC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAML---GELPPVSDASA--------V-------------IRGTVAYVPQVS------WI 238 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~---G~~~~~~g~~~--------~-------------~~~~i~~v~Q~~------~l 238 (1171)
++|++++|+|||||||||++++|+ |...+++|... . ++..+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 98888776543 0 122477888643 34
Q ss_pred CcccHHHHHh
Q 001055 239 FNATVRDNIL 248 (1171)
Q Consensus 239 ~~~Tv~eni~ 248 (1171)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4567777664
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=83.42 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=44.5
Q ss_pred cChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh---hhcCEEEEEeC
Q 001055 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL---SQVDRIILVHE 362 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l---~~~d~i~~l~~ 362 (1171)
.+.|+.+|..+++.++.+|+.+..+ .+.++|...+.+.+.+... .+.++|+.+|.+... ..+|.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4678999999999999888654333 4456777777766544322 356888888887553 45799998864
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=5.4e-05 Score=87.38 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.6
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCE
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGF 850 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g--~~~p~~G~I~i~g~ 850 (1171)
.+|++++++++ .|+|||++|||||||++.|.| ++++.+|.+.....
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 48999999998 999999999999999999999 66777787654443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.6e-05 Score=88.56 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=79.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 258 (1171)
+-|+.+.-.+++|+++.|.|++|+|||||+.-++..... . ...+.|++=+ ...+++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~------g~~Vl~fSlE-----------------ms~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D------DRGVAVFSLE-----------------MSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T------TCEEEEEESS-----------------SCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------CCeEEEEeCC-----------------CCHHHH
Confidence 357776668999999999999999999999888765422 1 1235554432 122222
Q ss_pred -HHHH---HHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhh
Q 001055 259 -EKAI---DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 259 -~~~~---~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~ 334 (1171)
.+.+ ....+.+... ..||+++++|++.|...+.++++++.|+|... +...+.....+.+
T Consensus 90 ~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~- 152 (338)
T 4a1f_A 90 ALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKS- 152 (338)
T ss_dssp HHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHH-
T ss_pred HHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHH-
Confidence 1111 1112222111 26999999999999999999999999998654 3333333332222
Q ss_pred ccC-CCEEEEEcC
Q 001055 335 ELS-GKTRVLVTN 346 (1171)
Q Consensus 335 ~~~-~~tvi~vtH 346 (1171)
.. +..+|+|-|
T Consensus 153 -~~gg~~lIVIDy 164 (338)
T 4a1f_A 153 -QHKELGIAFIDY 164 (338)
T ss_dssp -HCTTEEEEEEEE
T ss_pred -hcCCCCEEEEec
Confidence 12 466666654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.75 E-value=5e-07 Score=101.99 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=71.7
Q ss_pred CceeeeeEEecCCC------EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHh----
Q 001055 179 PTLLNINLDIPVGS------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL---- 248 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge------~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~---- 248 (1171)
..|++++..+..++ ++||+||||||||||+++|.|++.+..+ .+.+++++++.........+...
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~-----~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD-----HPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCeEEEEeecccccchhhhhhHHHHhh
Confidence 35566666666655 8999999999999999999999864211 23588999998776544444321
Q ss_pred cCCC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 249 FGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 249 ~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
+|.+ ++.+...+.++. +..|..+ +.- -..|-+..+|+.-+......|+|+|++.+..-.|+
T Consensus 149 ~g~P~~~D~~~l~~~L~~---------L~~g~~~-v~~--P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNA---------IKSGQRN-VRI--PVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTSGGGBCHHHHHHHHHH---------HHTTCSS-EEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCcccccHHHHHHHHHh---------hhccccc-ccc--chhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 2221 233333333221 1112100 000 01222233333223345578999999999875554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.75 E-value=6.3e-06 Score=87.43 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=27.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.8e-05 Score=87.20 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=79.3
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
+.|+.+.--+.+|+.+.|.|++|+|||||+.-++.......+.|.+- +
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f-------------------S------------- 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF-------------------S------------- 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE-------------------E-------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-------------------e-------------
Confidence 35777766799999999999999999999988876544333333321 1
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
.+.+.+++..-+-.. .. ...++.... ..||+++.+|+..|...+.+++++|.|+|+.. +.....
T Consensus 82 ----lEms~~ql~~Rlls~-----~~--~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~ 145 (338)
T 4a1f_A 82 ----LEMSAEQLALRALSD-----LT--SINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRL 145 (338)
T ss_dssp ----SSSCHHHHHHHHHHH-----HH--CCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHH
T ss_pred ----CCCCHHHHHHHHHHH-----hh--CCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHH
Confidence 011223322211100 00 011111111 26999999999999999999999999998654 333333
Q ss_pred HHHHHHHHcCCcEEEEEec
Q 001055 962 IQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH 980 (1171)
..+.+.+...+..+|+|-|
T Consensus 146 ~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 3333333222566777643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.5e-05 Score=83.70 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999876
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.4e-05 Score=84.36 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=39.2
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
.++|++++|+|+|||||||+++.|.+.+++.+|.|.+.+.|....
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 567999999999999999999999999999899998876665443
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=6.8e-05 Score=78.49 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
...|++++.+|++.++| ||++|+.....+++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999999887765
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.1e-06 Score=102.50 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEE-ECCEec
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RIL-IDGFDI 852 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~I~-i~g~~i 852 (1171)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +||.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 674 888654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=82.80 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=69.9
Q ss_pred cCCC--EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcC
Q 001055 189 PVGS--LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 266 (1171)
Q Consensus 189 ~~Ge--~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 266 (1171)
..+. .+.|.||+|+|||||++.+++...+.. ...+.++.-.+......+ +...++..+
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~--------------~~~l~~~l~ 99 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI--------------IGEIARSLN 99 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH--------------HHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH--------------HHHHHHHhC
Confidence 3456 899999999999999999999876642 112334432111100111 112222111
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh--ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc---CCCEE
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---SGKTR 341 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL--~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~---~~~tv 341 (1171)
. + ... ...+.++.... +...+ ..+|.++++||+... |+.....+...+..... .+.++
T Consensus 100 ~-------~------~~~--~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 100 I-------P------FPR--RGLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp C-------C------CCS--SCCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred c-------c------CCC--CCCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEE
Confidence 0 0 001 12233332221 11222 245789999999876 88887777665433222 46788
Q ss_pred EEEcCCcchhh
Q 001055 342 VLVTNQLHFLS 352 (1171)
Q Consensus 342 i~vtH~~~~l~ 352 (1171)
|++||+.++..
T Consensus 163 I~~~~~~~~~~ 173 (389)
T 1fnn_A 163 VIVGHNDAVLN 173 (389)
T ss_dssp EEEESSTHHHH
T ss_pred EEEECCchHHH
Confidence 99999886543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.59 E-value=1e-05 Score=91.89 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=49.5
Q ss_pred CccEEEEeeEEEeCCCCCCcce--------------eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLH--------------GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~--------------~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.+.+.|+||++.|+.. +..|+ |+.+.+.+|++++|+||+|+|||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4679999999999865 46888 8999999999999999999999999999998763
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=85.03 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=34.6
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc----CCcEEEEEecChhhh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTI 985 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~----~~~tvi~vtH~~~~~ 985 (1171)
.+|.||+|||+... |......+.+.+.+.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999886 8888887777775433 367899999998544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=3e-05 Score=80.15 Aligned_cols=29 Identities=14% Similarity=0.439 Sum_probs=26.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+|++++|+||||||||||+++|+|.+++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 47899999999999999999999998864
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=5.1e-05 Score=80.10 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=39.2
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
=++++|.+++|+|++||||||+++.|++.++ .+.+++|++.++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------CcEEEeCCccccCH
Confidence 4577899999999999999999999999874 37999999988754
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.2e-05 Score=85.55 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=4.6e-05 Score=90.35 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=44.0
Q ss_pred cCCCEEEEecCCcCCCH-HHHHHHHHHHHHHc-CCcEEEEEecCh-hhhhh-cCEEEE-EeCcEEEEecChh
Q 001055 940 RRSKILVLDEATAAVDV-RTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILL-LDSGRVLEYDTPE 1006 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~-~t~~~i~~~l~~~~-~~~tvi~vtH~~-~~~~~-~d~i~v-l~~G~i~~~g~~~ 1006 (1171)
.+|++|++||+..-.+. .+...+...+.... .++.+|++||+. ..+.. .+++.- +..|.+++.+.|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 67777888877654 468899999984 33222 222222 3456666665543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=2.9e-05 Score=96.71 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=70.6
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCccce-----------ecCcEEEEecCCCCCcccHHHHHhcCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-----------IRGTVAYVPQVSWIFNATVRDNILFGS 251 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~ 251 (1171)
|+++++|..++|+|++|+|||||++.|+|...+ ..|.+.. .+..+++.+|...++..++..||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli--- 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL--- 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE---
Confidence 467789999999999999999999999976544 2332200 012344444444333222222222
Q ss_pred CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCC-ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 001055 252 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330 (1171)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~-~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~ 330 (1171)
+..|. .++ .......-..+..++++| |+.++++.+.+++ ..
T Consensus 80 -------------------------------DTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~~ 121 (665)
T 2dy1_A 80 -------------------------------DAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAW-TV 121 (665)
T ss_dssp -------------------------------ECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-HH
T ss_pred -------------------------------eCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHH-HH
Confidence 11110 111 111222224577788899 9999999987554 33
Q ss_pred HHhhccCCCEEEEEcCCcchh
Q 001055 331 CIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 331 l~~~~~~~~tvi~vtH~~~~l 351 (1171)
+.. .+..+|++.|..+..
T Consensus 122 ~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH---TTCCEEEEEECGGGC
T ss_pred HHH---ccCCEEEEecCCchh
Confidence 332 357888888876653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.1e-05 Score=88.71 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=36.6
Q ss_pred CcceeeeEEEcCCC------EEEEECCCCCcHHHHHHHHhcCCC--CCCceEEE
Q 001055 802 PVLHGLSFTIPPSD------KVGIVGRTGAGKSSMLNTLFRIVE--LERGRILI 847 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge------~v~ivG~nGsGKSTLl~~l~g~~~--p~~G~I~i 847 (1171)
..|++++..+.+++ ++||+||||||||||+++|.+++. |++|.|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 35666666666665 899999999999999999999987 45666443
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.46 E-value=4.3e-05 Score=86.48 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCc
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~ 221 (1171)
+++++|++++|++++++|+||+||||++..|++.+.+..+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k 135 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK 135 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 46788889999999999999999999999999998776443
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=82.63 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=76.8
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 258 (1171)
+.|+.+.-.+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+ ...+++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------~~vl~~slE-----------------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------DVVNLHSLE-----------------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------CEEEEEESS-----------------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEECC-----------------CCHHHH
Confidence 467777777999999999999999999998887753211 11 235555433 122222
Q ss_pred H-HHHHH-cCchH-HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc
Q 001055 259 E-KAIDV-TSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335 (1171)
Q Consensus 259 ~-~~~~~-~~l~~-~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~ 335 (1171)
. +.... .+..- .+. .+ -..||+++++|+..|...+.++++++.|+|... +.........+.+
T Consensus 112 ~~R~~~~~~~i~~~~l~---~~--------~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~~~i~~~i~~l~~-- 176 (315)
T 3bh0_A 112 IKRLIVTAGSINAQKIK---AA--------RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--VNYIWSKTRQTKR-- 176 (315)
T ss_dssp HHHHHHHHTTCCHHHHH---SC--------HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--HHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCHHHHh---cC--------CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHHHH--
Confidence 1 11111 11110 011 10 013999999999999999999999999998644 3332222222222
Q ss_pred cCCCE--EEEEcC
Q 001055 336 LSGKT--RVLVTN 346 (1171)
Q Consensus 336 ~~~~t--vi~vtH 346 (1171)
..+.. +|+|-|
T Consensus 177 ~~~~~~~lVVID~ 189 (315)
T 3bh0_A 177 KNPGKRVIVMIDY 189 (315)
T ss_dssp TSSSCCEEEEEEC
T ss_pred hcCCCCeEEEEeC
Confidence 12445 777765
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.43 E-value=2.2e-05 Score=89.16 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=47.4
Q ss_pred cEEEEeeEEEcCCCCCCCcee--------------eeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 162 AISIRNGYFSWDSKAERPTLL--------------NINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~--------------~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+.|+|+++.|+. ++..|+ |+++.+.+|++++|+|++|||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999985 467888 899999999999999999999999999998865
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=4.4e-05 Score=78.23 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~ 853 (1171)
.+|++++|+|+|||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 569999999999999999999999875 88899876654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00034 Score=81.79 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=85.2
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-HhhheEEEcCCcccccccHHhhcc
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSGTVRFNLD 883 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~tv~~nl~ 883 (1171)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++.. .-..|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999888775432221 1110 0012332
Q ss_pred CCC---CCCHHHHHHHHHHhcHHHHHHHc-cCCcchhhhcCCCCCC---hhHHHHHHHHHHhccCCCEEEEecCCcCCCH
Q 001055 884 PFS---EHSDADLWEALERAHLKDAIRRN-SLGLDAQVSEAGENFS---VGQRQLLSLSRALLRRSKILVLDEATAAVDV 956 (1171)
Q Consensus 884 ~~~---~~~~~~i~~~l~~~~~~~~i~~l-p~gl~~~~~~~~~~LS---gGqkqrl~lArall~~p~iLlLDEpTs~LD~ 956 (1171)
.+. .....++. .+.++.+ ..++|..+-+.+..++ ....+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 211 11222321 1222222 2466654433333343 23556667777775555677788 5666555
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEec
Q 001055 957 RTDALIQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 957 ~t~~~i~~~l~~~~~~~tvi~vtH 980 (1171)
... + +.+... -+.+-+++|+
T Consensus 227 v~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHH--H-HHHHHH-TCCCEEEEES
T ss_pred HHH--H-HHHHhc-CCceEEEEeC
Confidence 432 2 223221 2445666666
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=2.7e-05 Score=81.91 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCc
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~ 221 (1171)
....+..++..++|++++|+|+|||||||++++|++.+. ..|.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 457788889999999999999999999999999999886 4443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.41 E-value=5e-05 Score=87.56 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=36.1
Q ss_pred cCCCCCccChHHHHHHHHH----HHh-ccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 282 IGERGVNISGGQKQRVSMA----RAV-YSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LA----raL-~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
+..+...+|+|+++|+.++ +++ ..+|++ +|+|++|......+++.+.+
T Consensus 298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 3555567888899988877 666 444444 89999999999988887654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.40 E-value=7.5e-05 Score=79.05 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=27.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00012 Score=83.86 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988874
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00048 Score=78.80 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=74.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~--~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.+++|+++.|.||+|||||||+..++.. .++..|+ ..+.+.|+.-+..+. .+++.+.++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg---~~~~vlyi~~E~~~~---------------~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY---PGGKIIFIDTENTFR---------------PDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB---CCCEEEEEESSSCCC---------------HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCeEEEEECCCCCC---------------HHHHHHHHHH
Confidence 5889999999999999999999998875 3332222 123567776554321 2222222222
Q ss_pred cCchH--HHhcCCCCCccccCCCCCccChH-HHHHHHHHHHhc----cCCCEEEEeCcCCCCCHH-------H-----HH
Q 001055 265 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY----SNSDVFIFDDPLSALDAH-------V-----GR 325 (1171)
Q Consensus 265 ~~l~~--~~~~~~~~~~~~i~~~g~~LSGG-qrqRv~LAraL~----~~~~vllLDEpts~LD~~-------~-----~~ 325 (1171)
.+... .++.+ . .. ...++. +.+.+..++.++ .+++++++|++++..+.. . ..
T Consensus 180 ~g~~~~~~l~~l---~--~~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~ 250 (343)
T 1v5w_A 180 FNVDHDAVLDNV---L--YA----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 250 (343)
T ss_dssp TTCCHHHHHHTE---E--EE----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHH
T ss_pred cCCCHHHHHhce---e--Ee----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHH
Confidence 22111 11111 0 00 012232 234455555555 579999999999887542 1 22
Q ss_pred HHHHHHHhhc-cCCCEEEEEcCCcc
Q 001055 326 QVFDRCIRGE-LSGKTRVLVTNQLH 349 (1171)
Q Consensus 326 ~l~~~l~~~~-~~~~tvi~vtH~~~ 349 (1171)
.+...|.+.. ..+.++|++.|-..
T Consensus 251 ~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 251 QMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCEEEEEeecee
Confidence 3333344333 23788888888543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0011 Score=75.77 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=37.3
Q ss_pred ceeeeeE--EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 180 TLLNINL--DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 180 ~l~~isl--~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
-|+.+-= .+++|+++.|.||+|||||||+..+++...+.. +.+.|+.-+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccc
Confidence 4554422 589999999999999999999999998765532 2456665543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.30 E-value=4.6e-05 Score=85.67 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-CCEecCCCChHHHhhheEEEcCCccc--ccccHHhhccCCCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVL--FSGTVRFNLDPFSEHS 889 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l--f~~tv~~nl~~~~~~~ 889 (1171)
++.+|+|+|++|+|||||++.|.|.. +.+ .+.+ .....+..|+++++..- |-.| ++ ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i~~iDT------pG--~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQAIYVDT------PG--LH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEEEEESS------SS--CC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeEEEEEC------cC--CC
Confidence 44589999999999999999999863 111 1111 11123446777776431 1111 11 11
Q ss_pred HHHHHHHHHHhcHHHHHHHcc---CCcchh--hhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCHHH-HHH
Q 001055 890 DADLWEALERAHLKDAIRRNS---LGLDAQ--VSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRT-DAL 961 (1171)
Q Consensus 890 ~~~i~~~l~~~~~~~~i~~lp---~gl~~~--~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~~t-~~~ 961 (1171)
. .-...+.. .+..... ...|.. +-.... +|+|++ .+++.+. ..|.++++ |.+|... ...
T Consensus 68 ~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 68 M-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp H-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred c-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 0 01111111 1111101 112221 122233 999886 4566665 67888888 7888876 556
Q ss_pred HHHHHHHHcC--C--cEEEEEecChhhhhh-cCEE
Q 001055 962 IQKTIREEFK--S--CTMLIIAHRLNTIID-CDRI 991 (1171)
Q Consensus 962 i~~~l~~~~~--~--~tvi~vtH~~~~~~~-~d~i 991 (1171)
+.+.+.++.. + .++.+.+|+-..+.. +|.+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 6666665543 2 356666776655544 4443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=76.82 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=27.2
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45566899999999999999999999999875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.29 E-value=5e-05 Score=87.66 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=34.9
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+++++++++++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999999999999999999999864
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00011 Score=77.27 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++.++|++++|+|+||||||||+++|+|.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4667899999999999999999999999876
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.26 E-value=5.7e-05 Score=86.41 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=38.4
Q ss_pred CcceeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 802 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~--v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
.+++.++..+..|+. +.+.||+|+||||+++++++.+.+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 588999999999998 9999999999999999999998766554
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.21 E-value=5.7e-05 Score=91.93 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 851 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~ 851 (1171)
++++...|... .+++++++++ +|+.++|+||||+|||||+++|++.+.+..|+|.++|..
T Consensus 86 ~~~vk~~i~~~--~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERILEY--LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHHHH--HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHHHH--HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 45555555432 4678888888 899999999999999999999999999999999888743
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00028 Score=79.24 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCcc-ceecCcEEEEecCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDAS-AVIRGTVAYVPQVS 236 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-~~~g~~-~~~~~~i~~v~Q~~ 236 (1171)
.++.+++|+|++|+|||||++.|+|..- +.++.. .......+++.++.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 3445899999999999999999999742 122211 11233467777764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.18 E-value=5.2e-05 Score=86.81 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=46.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 478999999999999999999999999999999999998888888766554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00039 Score=80.19 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00041 Score=78.41 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=65.4
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-- .| ..+.|++=
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSL------------ 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEES------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEEC------------
Confidence 467777767999999999999999999999877643211 11 01222211
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcC
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~ 953 (1171)
+.+.+++.+-+... .. ...+.... .....||+++++|+..|...+.++++++.|+|+..
T Consensus 105 -----E~s~~~l~~R~~~~-----~~--~i~~~~l~-~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVT-----AG--SINAQKIK-AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHH-----HT--TCCHHHHH-SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHH-----Hc--CCCHHHHh-cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 12233332221110 00 01111111 10012899999999999999999999999998743
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00044 Score=79.73 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~ 842 (1171)
.++..+.|.||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00011 Score=77.24 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=29.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
..++|++++|+|+||||||||++.|.+.+++..|
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3568899999999999999999999998876543
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=73.68 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchH
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 269 (1171)
++..+.|.||+|+||||+++++++.... .+-.+.- +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~----------~~~~i~~-~~l------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA----------TFLNISA-ASL------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC----------EEEEEES-TTT-------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----------CeEEeeH-HHH-------------------------------
Confidence 5678999999999999999999986521 0111100 000
Q ss_pred HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH----------HHHHHHHHHHhhcc---
Q 001055 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----------VGRQVFDRCIRGEL--- 336 (1171)
Q Consensus 270 ~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~----------~~~~l~~~l~~~~~--- 336 (1171)
.. .. .-+++++.|..++++...+|.++++||+.+-++.. ....+...+.....
T Consensus 91 -----~~---~~------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 91 -----TS---KY------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp -----SS---SS------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred -----hh---cc------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 00 12367888888888888999999999998876532 12223322222111
Q ss_pred -CCCEEEEEcCCcchhh-----hcCEEEEE
Q 001055 337 -SGKTRVLVTNQLHFLS-----QVDRIILV 360 (1171)
Q Consensus 337 -~~~tvi~vtH~~~~l~-----~~d~i~~l 360 (1171)
.+..+|.+|++++.++ ++++++.+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYV 186 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEEC
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEe
Confidence 1234667888776543 34555544
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0027 Score=70.76 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCH----------HHHHHHHHHHHHHc-----CCcEEEEEecChhhh----
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDV----------RTDALIQKTIREEF-----KSCTMLIIAHRLNTI---- 985 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~----------~t~~~i~~~l~~~~-----~~~tvi~vtH~~~~~---- 985 (1171)
+++++.|..++++...+|.+|++||+.+-++. .....+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35677777788888889999999999876543 22223444444422 124577788876543
Q ss_pred -hhcCEEEEE
Q 001055 986 -IDCDRILLL 994 (1171)
Q Consensus 986 -~~~d~i~vl 994 (1171)
.++++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 246765544
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0019 Score=69.51 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
+|+|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766553
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00048 Score=81.60 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred cCCCEEEEeCcCCCCCH-HHHHHHHHHHHhhccCCCEEEEEcCCcc
Q 001055 305 SNSDVFIFDDPLSALDA-HVGRQVFDRCIRGELSGKTRVLVTNQLH 349 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~-~~~~~l~~~l~~~~~~~~tvi~vtH~~~ 349 (1171)
.++++|++||+..-.+. .+.+.++..+......|+.+|++||+..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887764 5666677655444556788999998743
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00016 Score=82.99 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=36.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 854 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~ 854 (1171)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3477999999999999999999999999999999888776543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00028 Score=83.68 Aligned_cols=55 Identities=29% Similarity=0.461 Sum_probs=35.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCCceEEECCEecCCCChHHHhhheEEEcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE------------LERGRILIDGFDIAKFGLMDLRKILGIIPQS 870 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 870 (1171)
+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC----------
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhh
Confidence 799999999999999999999853 6789999999866444433334444444443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00014 Score=74.82 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEec
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDI 852 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G--~I~i~g~~i 852 (1171)
++|++++|+|++||||||+.++|.+.+.| .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998876 56 666665433
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00011 Score=80.34 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=40.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++++.+.|. ...+++++++++++| ++|+||||||||||+++|+|...
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34556666664 235899999999999 99999999999999999999864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=74.09 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=75.4
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCC-CCC-CCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGEL-PPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~-~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.+++|+++.|.|++|||||||+..++... .|. .|+ ..+.+.|+.=+..+ +.+++.+.++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~~~---------------~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEGTF---------------RWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSCC---------------CHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCCCC---------------CHHHHHHHHHH
Confidence 68999999999999999999999888753 221 111 12356676555322 12222222222
Q ss_pred cCchH--HHhcCCCCCccccCCCCCccChH-HHHHHHHHHHhc---cCCCEEEEeCcCCCCCHH--------H----HHH
Q 001055 265 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY---SNSDVFIFDDPLSALDAH--------V----GRQ 326 (1171)
Q Consensus 265 ~~l~~--~~~~~~~~~~~~i~~~g~~LSGG-qrqRv~LAraL~---~~~~vllLDEpts~LD~~--------~----~~~ 326 (1171)
.+... .++.+ .+. ...++. +.+.+..++.++ .+++++++|+.++..+.. . ...
T Consensus 165 ~g~~~~~~~~~l------~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~ 235 (324)
T 2z43_A 165 LGLDIDNVMNNI------YYI---RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235 (324)
T ss_dssp TTCCHHHHHHTE------EEE---ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHH
T ss_pred hCCCHHHHhccE------EEE---eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHH
Confidence 22211 11110 000 012333 345677777777 579999999999876431 1 123
Q ss_pred HHHHHHhhc-cCCCEEEEEcCCcc
Q 001055 327 VFDRCIRGE-LSGKTRVLVTNQLH 349 (1171)
Q Consensus 327 l~~~l~~~~-~~~~tvi~vtH~~~ 349 (1171)
+...+.+.. ..+.++|++.|-..
T Consensus 236 ~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 236 HLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhCCEEEEEcceee
Confidence 333343332 23788888887543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0008 Score=75.20 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=41.8
Q ss_pred ee-eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC
Q 001055 805 HG-LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853 (1171)
Q Consensus 805 ~~-vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~ 853 (1171)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 677766 9999999999999999999999999998899998876654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0022 Score=69.05 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998765543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00024 Score=72.31 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.|++++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00024 Score=76.42 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.6
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 184 isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
-+.+.++|++++|+|+||||||||+++|+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445679999999999999999999999997
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0018 Score=75.85 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchH
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 269 (1171)
++.+++++|++||||||++..|++.+.+.. .++.++.-++. .....+.+ ....+..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-------~kVllv~~D~~--r~~a~eqL-----------~~~~~~~gv-- 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-------YKVGLVAADVY--RPAAYDQL-----------LQLGNQIGV-- 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-------CCEEEEEECCS--CHHHHHHH-----------HHHHHTTTC--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEecCcc--chhHHHHH-----------HHHHHhcCC--
Confidence 467999999999999999999999886542 23555554431 11111111 111111110
Q ss_pred HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC-CC--CCHHHHHHHHH
Q 001055 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL-SA--LDAHVGRQVFD 329 (1171)
Q Consensus 270 ~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt-s~--LD~~~~~~l~~ 329 (1171)
| ... .......-.-.+-+++++...++|++|+|+|- .+ .|+.....+..
T Consensus 154 -----~-----~~~-~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 154 -----Q-----VYG-EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp -----C-----EEC-CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred -----c-----eee-ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 0 000 00111222223446777777899999999997 56 78876666654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00034 Score=71.22 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
.|++++|+|++||||||++++|++.+.+ +.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id 34 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYD 34 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEe
Confidence 4789999999999999999999998754 5555
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00031 Score=75.54 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=32.2
Q ss_pred ceeeeEEEc---CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 804 LHGLSFTIP---PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 804 l~~vs~~i~---~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
|.++|+++. +|..+.|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 555566555 8999999999999999999999999987 6666543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00037 Score=71.19 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+|++++|+|+|||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00046 Score=68.91 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=25.1
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 899999999999999999863
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00022 Score=74.56 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=31.2
Q ss_pred EEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 793 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 793 s~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|++- .++++++|+..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3456543 36899999988877 689999999999999999986
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00022 Score=86.35 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
.+++|++++|+|+||||||||+++|+|.+.|++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 5789999999999999999999999999988765
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.007 Score=69.27 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.8
Q ss_pred cceeee--EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 803 VLHGLS--FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 803 ~l~~vs--~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.|+.+- =-+++|+++.|.|++|+|||||...++....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455542 1388999999999999999999987775443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0014 Score=74.09 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+..+.|.||+|+|||||++.+++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467899999999999999999987643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0038 Score=67.97 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
++++++.+++| +.|+||+|+|||||+++|++.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44444444555 8999999999999999999876421 355544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00023 Score=75.35 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=37.1
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCE
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGF 850 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G--~I~i~g~ 850 (1171)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 44678999999999999999999999999988888 8888753
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00075 Score=67.35 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.2
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 899999999999999999873
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00049 Score=74.16 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=68.4
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTS 266 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~ 266 (1171)
+.+|+.++++||+||||||++.+++.......+. ...++++.+.|... ..++.+++........ -..++
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~------~~~~g 142 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEP------GKSCG 142 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT------TSSEE
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhcccc------CceEE
Confidence 4578999999999999999888765432111111 12356777777653 4566777642111000 00000
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHh
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~ 333 (1171)
.....+...... +....--+.|.-.+.. +..+.+.+++++||+-. ++|........+.+..
T Consensus 143 ~~~~~~~~~~~~----~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 143 YSVRFESILPRP----HASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp EEETTEEECCCS----SSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred EeechhhccCCC----CCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 000000000000 0001123456665553 33688999999999976 5777655444444443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00082 Score=69.62 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=20.8
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
.+++++++..++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3788999988777 789999999999999999987
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=71.62 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+..|+.+.++|||||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 35689999999999999998877653
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0045 Score=69.88 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34678999999999999999999877543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.001 Score=67.70 Aligned_cols=27 Identities=48% Similarity=0.496 Sum_probs=23.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00081 Score=72.21 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHh---cCCCCCCceE
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLF---RIVELERGRI 845 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I 845 (1171)
.-+++|.||+||||||+.+.|. |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 5555556665
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0057 Score=68.41 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.3
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
+.++++..+.|.||+|+|||||+++|++... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 3467899999999999999999999998763 3444443
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00028 Score=80.67 Aligned_cols=52 Identities=19% Similarity=0.061 Sum_probs=43.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
.+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..+ .++++..+|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-------~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-------KVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEEeecCC
Confidence 578899999999999999999999999999999998866532 3566666553
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00048 Score=72.49 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=26.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
...+|..++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0019 Score=67.47 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999876543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0009 Score=71.87 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=28.1
Q ss_pred ceeeeeEEec---CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 180 TLLNINLDIP---VGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 180 ~l~~isl~i~---~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
-|.++|+.+. +|.+++|.|++||||||+++.|...+++
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4666777776 8999999999999999999999998876
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0052 Score=68.75 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I 845 (1171)
...+.|+||+|+||||+++.|.+.+.+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45789999999999999999999987766644
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00062 Score=77.76 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+++|+++|| ...+++.....+.+.+.+......+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67889999999999988765556677788776543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0058 Score=67.49 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.6
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999875
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=68.40 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i 847 (1171)
++.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999887755445544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=75.26 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=34.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCceEEECCE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI-----------VELERGRILIDGF 850 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~-----------~~p~~G~I~i~g~ 850 (1171)
.+..|.+++|||++|+|||||++.|+|. ..|..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898887653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00043 Score=79.74 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=37.1
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
.+.+.++|++..|+.. .++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3568899999888654 5889999976 99999999999999999987666666554433
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0029 Score=67.52 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999987654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0058 Score=68.34 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVS 219 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~ 219 (1171)
..+.|+||+|+||||++++|++.+.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 4788999999999999999999876543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=66.91 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=26.6
Q ss_pred eeeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 183 ~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0021 Score=67.55 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=24.7
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.+.++++.+ .+.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 345566665 4999999999999999998853
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0018 Score=66.85 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=32.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~ 846 (1171)
...+|..+.|+|++||||||+.+.|.+.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999999887777663
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0038 Score=62.79 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 699999999999999999998653
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0021 Score=65.82 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
++|++++|+|++||||||+++.|++.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999997754
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0056 Score=64.97 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.5
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
.+|.+|++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999876 78888888888886644467788888876654
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0037 Score=65.28 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999987643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0014 Score=74.96 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
++.+++|+|++|||||||++.|+|.+.+..+ +|+++..+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-------~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-------KLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-------eEEEEeecCC
Confidence 4678999999999999999999998766543 4667766664
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.012 Score=64.77 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999998865
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=64.67 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=65.85 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=26.5
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 806 ~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
++|+..++|.+++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00093 Score=81.23 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.5
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.+++++++++ +|+.++|+||||||||||+++|++.+.+.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4677788888 89999999999999999999999998664
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.01 Score=70.26 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=75.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 258 (1171)
+.|+.+.-.+++|+++.|.|++|+|||||+.-++.......| ..+.|++=+ ...+.+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE-----------------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLE-----------------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESS-----------------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECC-----------------CCHHHH
Confidence 356776667999999999999999999999888765432111 134444332 122222
Q ss_pred H-HHHH-HcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc
Q 001055 259 E-KAID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 336 (1171)
Q Consensus 259 ~-~~~~-~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~ 336 (1171)
. +.+. ..++ +. ..+. ...|+..+.+|+.-|...+.+.++++.|+|.. +..........+.+.
T Consensus 245 ~~R~~~~~~~i-------~~---~~l~--~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~~~l~~~~~~l~~~-- 308 (444)
T 2q6t_A 245 TLRMMCSEARI-------DM---NRVR--LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TLMEVRARARRLVSQ-- 308 (444)
T ss_dssp HHHHHHHHTTC-------CT---TTCC--GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCC-------CH---HHHh--CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CHHHHHHHHHHHHHH--
Confidence 1 1111 1111 10 0111 13699999999998888888888999887744 333333222223221
Q ss_pred CCCEEEEEcC
Q 001055 337 SGKTRVLVTN 346 (1171)
Q Consensus 337 ~~~tvi~vtH 346 (1171)
.+..+|+|-+
T Consensus 309 ~~~~lIvID~ 318 (444)
T 2q6t_A 309 NQVGLIIIDY 318 (444)
T ss_dssp SCCCEEEEEC
T ss_pred cCCCEEEEcC
Confidence 2455666543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0047 Score=65.89 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
++..+.|.||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0022 Score=67.30 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.3
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
...+|.+++|+||+||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0032 Score=64.02 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999975
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0038 Score=65.65 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=24.4
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
.+.++.+.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 89999999999999999886
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0032 Score=64.42 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEe
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFD 851 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~ 851 (1171)
-..++|+|++|||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999886554 3677776543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0043 Score=64.13 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.2
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988877 7899999999999999999974
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0075 Score=71.64 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCc-CCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs-~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.|.+....+...+++++++|+..... ++... ...+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 347777788888889999877665444 45444 4556666665 577888888876654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0063 Score=72.29 Aligned_cols=55 Identities=25% Similarity=0.175 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHhhccCCCEEEEEcCCcc
Q 001055 291 GGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349 (1171)
Q Consensus 291 GGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~ 349 (1171)
+.|++-..++...+.++|++|+..... ++.+. ..++.+.+.+ .++.+|+|.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~---~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR---TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT---CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH---cCCCEEEEEECcc
Confidence 348888888999999999877765544 45444 4566665432 4577777775543
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0033 Score=65.74 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0012 Score=69.02 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=31.9
Q ss_pred EEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 169 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 169 s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|++ -+++++++|+..+++ .++++|++|+|||||++.+.+.
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 345653 346899999998887 5789999999999999999874
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0064 Score=69.58 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=29.3
Q ss_pred CceeeeeE---EecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 179 PTLLNINL---DIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 179 ~~l~~isl---~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.|+.+ + .+++|+++.|.|++|+|||||...++...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345554 3 48999999999999999999998887654
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0026 Score=66.55 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
..+++|+|++||||||+.+.|.+.+ |.+.+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 4555654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.002 Score=76.99 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=33.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
..++++++.+++| ++|+||||+|||||+++|+|+..
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999 99999999999999999999863
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0015 Score=68.99 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=30.4
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+.+++|.+++|+|++||||||+.+.|.+.++|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 55788999999999999999999999998865444
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0045 Score=64.69 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.027 Score=63.44 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987774
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.035 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
.+.-+-|.||+|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3455889999999999999999877544
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0029 Score=65.20 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=27.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
...+|.+++|+|++||||||+.+.|++.+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999887654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0031 Score=68.64 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=33.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
...++.++.|+|++||||||+.+.|.+.+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456688999999999999999999998764 35677776443
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.006 Score=62.56 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0022 Score=72.61 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.1
Q ss_pred CceeeeeEEecCCCE--EEEEcCCCccHHHHHHHHhcCCC
Q 001055 179 PTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~--v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367888899999999 99999999999999999998763
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.063 Score=61.51 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
-+++|+.+.|.||+|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.03 Score=66.22 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=63.8
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.......|. .+.|++=
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~sl------------ 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSL------------ 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEES------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEEC------------
Confidence 3577776568999999999999999999998887654322220 1111110
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcC
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~ 953 (1171)
+.+.+++..-+.. . . .+++..--.. ..|+..+.+|+.-|...+.+.++.+.|+|...
T Consensus 238 -----E~~~~~l~~R~~~-----~--~--~~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 238 -----EMPAAQLTLRMMC-----S--E--ARIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp -----SSCHHHHHHHHHH-----H--H--TTCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred -----CCCHHHHHHHHHH-----H--H--cCCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 1122222211110 0 0 1111110011 25899999999988888888889998876443
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0041 Score=72.72 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=32.5
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
++++|+ +|++++++|+|||||||++..|++.+.+..+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 567777 8999999999999999999999999877543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0021 Score=72.90 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=34.1
Q ss_pred CcceeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Q 001055 802 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~--v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 378888999999999 99999999999999999998753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0086 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.019 Score=60.71 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=31.3
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
.++.++++||+-. +|+.....+...+.. ...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~-~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEE-PPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHS-CCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhc-CCCceEEEEEeCChHhC
Confidence 3578999999866 788877777665432 22356788888876654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0066 Score=70.60 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
.+..+.|+|+|||||||+++.|++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998888888888774
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0079 Score=61.63 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999997533
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0067 Score=63.34 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0072 Score=62.01 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.012 Score=67.20 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=30.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------CCCCCCceEEECC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFR-----------IVELERGRILIDG 849 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g-----------~~~p~~G~I~i~g 849 (1171)
|-+++|||++|+|||||++.|++ ...|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567788887765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.27 E-value=0.003 Score=70.52 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=36.0
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 184 isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
++++.+ |++++++|++|+||||++..|++.+.+..+ ++.++..++
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-------~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-------KVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-------CEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEecCC
Confidence 677766 999999999999999999999998865432 355665554
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.012 Score=66.14 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+.-+.|.||+|+|||+|+++|.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.14 Score=56.98 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+..+.|.||+|+||||+++.++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998887653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0021 Score=74.03 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=35.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.+.++|++..|.. +.++++++|.| +|+|++|+|||||++.|.|...+.
T Consensus 17 ~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~ 64 (361)
T 2qag_A 17 YVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP 64 (361)
T ss_dssp ----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--
T ss_pred eEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4788888888752 46788888877 999999999999999998875443
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.018 Score=59.08 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-C----CCCCCc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR-I----VELERG 843 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g-~----~~p~~G 843 (1171)
+++|+|++|+|||||++.+.+ . +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 699999999999999976654 3 456655
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.02 Score=65.76 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
..+..+.|.||+|+||||+++.+...+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999987643
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0094 Score=61.11 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=63.60 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999998754
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.04 E-value=0.008 Score=65.36 Aligned_cols=34 Identities=41% Similarity=0.611 Sum_probs=24.3
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444455555 88999999999999999998763
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.024 Score=66.95 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=71.4
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
-|+.+.-.+++|+++.|.|++|+|||||+.-++...-.. ...+.|++=+- + ..+-..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSlEm-----s-----------~~ql~~ 242 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLEM-----G-----------KKENIK 242 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECSSS-----C-----------TTHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEECCC-----C-----------HHHHHH
Confidence 455555479999999999999999999988776532110 12455554331 0 111111
Q ss_pred HHHH-HcCchH-HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC
Q 001055 260 KAID-VTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337 (1171)
Q Consensus 260 ~~~~-~~~l~~-~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~ 337 (1171)
+.+. ..+... .+. .| . ..|+..+.+|+.-|...+.+.++++.|+|. +++.........+.+. .
T Consensus 243 R~~~~~~~i~~~~l~---~g------~--~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~--~ 307 (444)
T 3bgw_A 243 RLIVTAGSINAQKIK---AA------R--RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRK--N 307 (444)
T ss_dssp HHHHHHSCCCHHHHH---HT------G--GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHH--S
T ss_pred HHHHHHcCCCHHHHh---cc------c--CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHH--h
Confidence 2111 112110 010 00 0 127778888888888777788888888774 5554443333333222 2
Q ss_pred CCE--EEEEcC
Q 001055 338 GKT--RVLVTN 346 (1171)
Q Consensus 338 ~~t--vi~vtH 346 (1171)
+.. +|+|-+
T Consensus 308 ~~~~~lIVID~ 318 (444)
T 3bgw_A 308 PGKRVIVMIDY 318 (444)
T ss_dssp CSSCEEEEEEC
T ss_pred CCCCeEEEEec
Confidence 344 666643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=63.19 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999998743
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.093 Score=60.00 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+..-+.|.||+|+|||||++.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998765
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.032 Score=59.28 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChh-----------hhhhcCEEEEEe
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-----------TIIDCDRILLLD 995 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~-----------~~~~~d~i~vl~ 995 (1171)
+|+++++||.-. ++.+..+.+ ..|.+ .+.+||++-|+.+ .+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 766543333 33333 4889999999432 223489988764
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.014 Score=59.22 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.|.++.|+|++||||||+.+.|+..++
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.014 Score=59.54 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
=+++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.014 Score=59.71 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.0066 Score=66.06 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.3
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++.++.|+|++||||||+.+.|+..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45667899999999999999999998764
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.052 Score=63.98 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.0
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555554689999999999999999999876664
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.084 Score=51.84 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+.-+.|.||+|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4456889999999999999999876543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=58.62 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.083 Score=60.42 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+..-+.|.||+|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355679999999999999999998765
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.015 Score=59.43 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
-.+++|+|++|||||||++.|++.+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 358999999999999999999987653
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.13 Score=55.63 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++..-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.012 Score=67.84 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+..|..++|||+||+|||||++.|+|.-
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45678899999999999999999999873
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.12 Score=69.78 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I 845 (1171)
-+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 489999999999999999999999887665544444
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.045 Score=61.12 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
-.+++|..+.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.0058 Score=69.59 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCceeeeeEEecCCCE--EEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 178 RPTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~--v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
+.+++.++..++.|++ +.+.||+|+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3588899999999998 9999999999999999999987654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.02 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.019 Score=58.88 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1171 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-77 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-56 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-74 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-54 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-70 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-47 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-68 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-53 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-65 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-49 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 8e-62 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-61 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-38 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-37 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-37 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-26 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-35 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-25 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-34 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-21 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-26 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-28 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-08 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-06 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-04 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 4e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-04 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 253 bits (648), Expect = 2e-77
Identities = 83/246 (33%), Positives = 140/246 (56%), Gaps = 2/246 (0%)
Query: 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 837
P G I + V +Y P+L ++ +I + V VG +G GKS+++N + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 838 VELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL-DPFSEHSDADLWEA 896
++ G+ILIDG +I F LR +G++ Q +LFS TV+ N+ +D ++ EA
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
+ A+ D I G D +V E G S GQ+Q LS++R L IL+LDEAT+A+D+
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 957 RTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
++++IQ+ + K T LI+AHRL+TI D+I+++++G ++E T EL++ +G ++
Sbjct: 188 ESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQG-AY 246
Query: 1017 SKMVQS 1022
+
Sbjct: 247 EHLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 194 bits (494), Expect = 1e-56
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 15/246 (6%)
Query: 154 PPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213
P+ I I + F ++ E P L +INL I G VA VG +G GK++LI+ +
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR 66
Query: 214 ELPPVSDA------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP-ARYEK 260
S + +R + V Q + +F+ TV++NIL G +
Sbjct: 67 FYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVE 126
Query: 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320
A + + + LP G TE+GERGV +SGGQKQR+S+AR +N + I D+ SALD
Sbjct: 127 AAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 321 AHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGEL 380
+ + + +T ++V ++L ++ D+I+++ G + E GT +L
Sbjct: 187 LESESIIQE-ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 245
Query: 381 FQKLME 386
++ L
Sbjct: 246 YEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 244 bits (625), Expect = 2e-74
Identities = 86/241 (35%), Positives = 141/241 (58%), Gaps = 3/241 (1%)
Query: 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843
+G ++F +V Y P L ++ IP V +VGR+G+GKS++ + + R +++ G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 844 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN--LDPFSEHSDADLWEALERAH 901
IL+DG D+ ++ L LR + ++ Q+ LF+ TV N E+S + EA A+
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
D I + GLD + E G S GQRQ ++++RALLR S IL+LDEAT+A+D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021
IQ + E K+ T L+IAHRL+TI D I++++ G ++E T ELL+ G ++++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHG-VYAQLHK 249
Query: 1022 S 1022
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 186 bits (474), Expect = 7e-54
Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 16/239 (6%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+ RN F++ + E P L NINL IP G VA+VG +G GK+++ S +
Sbjct: 13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 222 SAV------------IRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSL 267
+ +R VA V Q +FN TV +NI + + + E+A +
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 268 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
++ + G T IGE GV +SGGQ+QR+++ARA+ +S + I D+ SALD R +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 328 FDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
+ +T +++ ++L + Q D I++V +G++ E GT +L ++ +L +
Sbjct: 192 QA-ALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 231 bits (591), Expect = 6e-70
Identities = 81/237 (34%), Positives = 140/237 (59%), Gaps = 1/237 (0%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I F ++ RY+P+ P +L ++ +I + +GIVGR+G+GKS++ + R E G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDA 905
IDG D+A LR+ +G++ Q VL + ++ N+ + S + A + A D
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
I G + V E G S GQRQ ++++RAL+ KIL+ DEAT+A+D ++ +I +
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 966 IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+ + K T++IIAHRL+T+ + DRI++++ G+++E +ELLS S +S + Q
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 166 bits (421), Expect = 6e-47
Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 18/239 (7%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I+ RN F + L NINL I G ++ IVG +G GK++L + P +
Sbjct: 2 ITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQ 59
Query: 223 AVIRGT-------------VAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQ 268
+I G V V Q + + N ++ DNI + + A +
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
+ L G T +GE+G +SGGQ+QR+++ARA+ +N + IFD+ SALD +
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 329 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL-SNNGELFQKLME 386
+ G+T +++ ++L + DRII++ +G + E+G ++L S L+ L +
Sbjct: 180 RN-MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 227 bits (581), Expect = 2e-68
Identities = 73/248 (29%), Positives = 135/248 (54%), Gaps = 8/248 (3%)
Query: 781 WPSSGSIKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838
G ++F+DV Y RP+ VL GL+FT+ P + +VG G+GKS++ L +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPD-VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY 64
Query: 839 ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL--DPFSEHSDADLWEA 896
+ G++L+DG + ++ L + + + Q P +F +++ N+ + + ++ A
Sbjct: 65 QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAA 124
Query: 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956
++ I G D +V EAG S GQRQ ++L+RAL+R+ +L+LD+AT+A+D
Sbjct: 125 AVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDA 184
Query: 957 RTDALIQKTIRE--EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1014
+ +++ + E E S ++L+I L+ + D IL L+ G + E T ++L+ +G
Sbjct: 185 NSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG- 243
Query: 1015 SFSKMVQS 1022
+ MVQ+
Sbjct: 244 CYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 184 bits (468), Expect = 4e-53
Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+ ++ F++ ++ + L + + G + A+VG G GK+++ + + P
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 222 ------------SAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE--KAIDVTSL 267
+ VA V Q +F ++++NI +G +P E A +
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 268 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
+ LP G TE+ E G +SGGQ+Q V++ARA+ V I DD SALDA+ QV
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 328 FDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
E ++ +L+T L + Q D I+ + G ++E GT + L + +++
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 219 bits (559), Expect = 2e-65
Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 4/238 (1%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+ V Y + +L +SF P+ + G +G GKS++ + L R + G I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE--HSDADLWEALERAHLKD 904
IDG I L + R +G + Q + +GT+R NL E ++D DLW+ L+ A +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK 964
+ L+ +V E G S GQRQ L+++RA LR KIL+LDEATA++D +++++QK
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 965 TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022
+ K T L+IAHRL+TI+D D+I ++ G++ EL++ ++K V
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHP-LYAKYVSE 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 173 bits (440), Expect = 2e-49
Identities = 58/238 (24%), Positives = 116/238 (48%), Gaps = 17/238 (7%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 217
+S R+ F++D L +I+ + S++A G +G GK+++ S + P
Sbjct: 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 218 ------VSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG--SAFEPARYEKAIDVTSLQ 268
+ + S R + +V Q S I T+R+N+ +G + + +D+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVF 328
++ +P TE+GERGV ISGGQ+QR+++ARA N + + D+ ++LD+ V
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 329 DRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386
+ + + G+T +++ ++L + D+I + +G + G +L L+ K +
Sbjct: 180 -KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 210 bits (536), Expect = 8e-62
Identities = 90/268 (33%), Positives = 145/268 (54%), Gaps = 3/268 (1%)
Query: 134 VSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNG--YFSWDSKAERPTLLNINLDIPVG 191
+ ++ + F LL ++G S FS P L NINL+I G
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKG 62
Query: 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGS 251
++AI G TG GKTSL+ +LGEL S+ G V++ Q SWI T+++NI+FG
Sbjct: 63 EMLAITGSTGSGKTSLLMLILGELEA-SEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGV 121
Query: 252 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311
+++ RY+ + LQ D+ D T +GE GV +SGGQ+ R+S+ARAVY ++D+++
Sbjct: 122 SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYL 181
Query: 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 371
D P LD QVF+ C+ ++ KTR+LVT+++ L + D+I+++H+G GTF
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF 241
Query: 372 EDLSNNGELFQKLMENAGKMEEYVEEKE 399
+L + F + +++ EE+
Sbjct: 242 SELQSLRPDFSSKLMGYDTFDQFTEERR 269
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 208 bits (530), Expect = 5e-61
Identities = 56/261 (21%), Positives = 108/261 (41%), Gaps = 21/261 (8%)
Query: 763 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGR 822
EL + +SN ++ F + L P VL ++ I + + I G
Sbjct: 18 ELLEKVQ---QSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLNIEKGEMLAITGS 70
Query: 823 TGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 882
TG+GK+S+L + +E G I G + Q + GT++ N+
Sbjct: 71 TGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENI 117
Query: 883 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942
+ + ++ L+ I + + + + E G S GQR +SL+RA+ + +
Sbjct: 118 IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177
Query: 943 KILVLDEATAAVDVRT-DALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001
+ +LD +DV T + + + + + + T +++ ++ + D+IL+L G
Sbjct: 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYF 237
Query: 1002 YDTPEELLSNEGSSFSKMVQS 1022
Y T EL S SK++
Sbjct: 238 YGTFSELQSLRPDFSSKLMGY 258
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 140 bits (354), Expect = 5e-38
Identities = 49/236 (20%), Positives = 108/236 (45%), Gaps = 12/236 (5%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+K E++ R+ ++ L+ TI + + ++G +G GK++ L + + E GRI
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDA 905
D+ L + + ++ QS ++ TV N+ + E +R + A
Sbjct: 65 FGDRDVTY--LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV--RWA 120
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
L ++ ++ S GQRQ ++++RA++ +L++DE + +D + ++
Sbjct: 121 AEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE 178
Query: 966 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
I++ + T + + H + DRI +++ G++L+ +P E+ S F
Sbjct: 179 IKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (275), Expect = 2e-27
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 38/238 (15%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+ + N + + +NL I G + ++G +G GKT+ + + G P ++
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-TEG 61
Query: 222 SAVIRGT-----------VAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEKAI 262
++ V Q ++ + TV +NI F + R A
Sbjct: 62 RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
++ ++ L+ P +SGGQ+QRV++ARA+ DV + D+PLS LDA
Sbjct: 122 ELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170
Query: 323 VGRQVFD--RCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+ + + ++ +L T + VT+ + DRI +++ G + + G+ ++
Sbjct: 171 LRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 138 bits (350), Expect = 1e-37
Identities = 50/237 (21%), Positives = 96/237 (40%), Gaps = 28/237 (11%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ +DV R L LS + + + +VG GAGKS++L + + +G I
Sbjct: 4 MQLQDVAESTR------LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQ 56
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSP-VLFSGTVRFNLDPF-SEHSDADLWEALERAHLKD 904
G + + L + Q F+ V L + + +L + A
Sbjct: 57 FAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---- 112
Query: 905 AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR-------RSKILVLDEATAAVDVR 957
L LD ++ + S G+ Q + L+ +L+ ++L+LDE ++DV
Sbjct: 113 ------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVA 166
Query: 958 TDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ + K + + +++ +H LN + R LL G++L EE+L+
Sbjct: 167 QQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 2e-21
Identities = 43/227 (18%), Positives = 78/227 (34%), Gaps = 33/227 (14%)
Query: 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP----------PVSDASAV- 224
AE L ++ ++ G ++ +VG G GK++L++ M G P+ SA
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK 69
Query: 225 IRGTVAYVPQVSWI-FNATVRDNILFG--SAFEPARYEKAIDVTSLQHDLDLLPGGDVTE 281
+ AY+ Q F V + +L L
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN----- 124
Query: 282 IGERGVNISGGQKQRVSMARAVYS-------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 334
+SGG+ QRV +A V + + D+P+++LD +
Sbjct: 125 ------QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 335 ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNNGEL 380
G V+ ++ L+ + R L+ G + G E++ L
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 225
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 138 bits (349), Expect = 3e-37
Identities = 60/241 (24%), Positives = 118/241 (48%), Gaps = 13/241 (5%)
Query: 787 IKFEDVVLRYRPELPPV--LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
IK ++ + + L+ +S +P G++G +GAGKS+++ + + G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 845 ILIDGFDIAKFGLMD---LRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERA 900
+L+DG ++ + R+ +G+I Q L S TV N+ E + E R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
+ + +GL + N S GQ+Q ++++RAL K+L+ DEAT+A+D T
Sbjct: 122 --TELLSL--VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 961 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017
I + +++ T+L+I H ++ + CD + ++ +G ++E DT E+ S+ + +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237
Query: 1018 K 1018
+
Sbjct: 238 Q 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 6e-25
Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 37/241 (15%)
Query: 163 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
I + N + L N++L +P G + ++G +G GK++LI + P
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 220 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFE-------PARY 258
R + + Q + + + TV N+ + R
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 259 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
+ + + L D P N+SGGQKQRV++ARA+ SN V + D+ SA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 319 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 376
LD R + + G T +L+T+++ + ++ D + ++ G + E+ T ++ +
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 377 N 377
+
Sbjct: 231 H 231
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 132 bits (334), Expect = 2e-35
Identities = 53/235 (22%), Positives = 112/235 (47%), Gaps = 10/235 (4%)
Query: 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
G++ +D+ R + +L G+SF I + G++G GAGK++ L + +++ G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLK 903
+ + G ++ ++RK++ +P+ + L + + E E +
Sbjct: 59 VTVFGKNV-VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMV--E 115
Query: 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963
A GL ++ + +S G + L ++RAL+ ++ +LDE T+ +DV ++
Sbjct: 116 RATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 964 KTIREEFKSC-TMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016
K +++ + T+L+ +H + + CDRI L+ +G ++E T EEL +
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 105 bits (264), Expect = 5e-26
Identities = 50/251 (19%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
A+ +++ ++ L I+ +I G + ++G G GKT+ + + + P S
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 220 ---------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAI 262
+ +R ++Y+P+ + + N + + F + F E+A
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 263 DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH 322
++ L + S G +++ +ARA+ N + I D+P S LD
Sbjct: 119 EIAGLGEKIKDRVST-----------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 323 VGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN---- 377
R+V + G T ++ ++ + + + DRI L+H G + E GT E+L
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
Query: 378 --GELFQKLME 386
E+F+++++
Sbjct: 228 NIEEVFEEVVK 238
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 133 bits (335), Expect = 3e-35
Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
+ D+ RY VL G+S D + I+G +G+GKS+ L + + + G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 847 IDGFDIAKFGLMD-------------LRKILGIIPQSPVLFSG-TVR-FNLDPFSEHSDA 891
++G +I D LR L ++ Q L+S TV ++ +
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 892 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951
+A ERA + + + AQ S GQ+Q +S++RAL +L+ DE T
Sbjct: 121 SKHDARERA--LKYLAKVGIDERAQGKYPVH-LSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 952 AAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009
+A+D + + +++ + TM+++ H + ++ L G++ E PE++
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 237
Query: 1010 SN 1011
N
Sbjct: 238 GN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (262), Expect = 1e-25
Identities = 52/244 (21%), Positives = 99/244 (40%), Gaps = 36/244 (14%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--- 219
+ + + + + L ++L G +++I+G +G GK++ + + P
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 220 ----------------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPA 256
+ ++R + V Q + + TV +N++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 257 RYEKAID--VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314
+ + + +SGGQ+QRVS+ARA+ DV +FD+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVH----LSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 315 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 373
P SALD + +V + GKT V+VT+++ F V +I +H+G ++EEG E
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 374 LSNN 377
+ N
Sbjct: 236 VFGN 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 129 bits (327), Expect = 2e-34
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 787 IKFEDVVLRY--RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844
IK ++V Y E+ L ++ I + V I+G +G+GKS+MLN + + + G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 845 ILIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSG-TVRFNLD---PFSEHSDADLWEA 896
+ ID +L KI +G + Q L T N++ F E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 897 LERAHLKDAIRRNSLGLDAQVSEA-GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
+RA + L+ + + S GQ+Q ++++RAL I++ D+ T A+D
Sbjct: 122 RKRALECLKM----AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 956 VRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005
+T I + +++ + T++++ H +N +RI+ L G V +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (281), Expect = 2e-28
Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 163 ISIRNGYFSWDSKAERPTLL-NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
I ++N ++ E L N+NL+I G V+I+G +G GK+++++ + P
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 220 --------------DASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDV 264
+ + + R + +V Q + T +N+ F+ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 265 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
+ + + + +SGGQ+QRV++ARA+ +N + + D P ALD+ G
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 325 RQVFD--RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370
++ + + E GKT V+VT+ ++ +RII + +G V+ E
Sbjct: 182 EKIMQLLKKLNEED-GKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 124 bits (312), Expect = 3e-32
Identities = 56/238 (23%), Positives = 104/238 (43%), Gaps = 15/238 (6%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ E++V + L G+S ++ D I+G G+GKS+++N + ++ + GR+
Sbjct: 5 LRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 847 IDGFDIAKFGLMDL-RKILGIIPQSPVLFSG-TVRFNL----DPFSEHSDADLWEALERA 900
+ DI +L + Q+P TV NL E L+
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 901 HLKDAIRR-----NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955
++ + + L L S GQ +L+ + RAL+ K++V+DE A V
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 956 VRTDALIQKTIRE-EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
I + E + K T LII HRL+ +++ D + ++ +G+++ EE + N
Sbjct: 183 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (251), Expect = 4e-24
Identities = 38/219 (17%), Positives = 88/219 (40%), Gaps = 24/219 (10%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-------------DASAVIRGTV 229
+++ + G + I+G G GK++LI+ + G L + + + +
Sbjct: 22 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81
Query: 230 AYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHD--------LDLLPGGDVT 280
Q TV +N+L G ++ +L ++
Sbjct: 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS 141
Query: 281 EIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339
+ +R +SGGQ + V + RA+ +N + + D+P++ + + +F+ + + G
Sbjct: 142 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGI 201
Query: 340 TRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
T +++ ++L + D + ++ G + EG E+ N
Sbjct: 202 TFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (305), Expect = 2e-31
Identities = 43/234 (18%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845
++ DV + + +S + + + ++G +G GK++ L + + E RG+I
Sbjct: 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 846 LIDGFDIAKFGLMDLRKI----LGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERA 900
I +A + ++ QS L+ + N+ + E +R
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
++ LGL ++ S GQRQ ++L RA++R+ ++ ++DE + +D +
Sbjct: 121 --REVAEL--LGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 961 LIQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
++ +++ T + + H + DRI +++ G + + +P+E+
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 93.1 bits (231), Expect = 1e-21
Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 20/232 (8%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221
+ + + + + E + ++L++ G + ++G +G GKT+ + + G P S
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-SRG 58
Query: 222 SAVIRGTV-------AYVPQVSWIFNATVRDNILF------GSAFEPARYEKAIDVTSLQ 268
I + +VP + L+ + P + K Q
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 269 HDLDLLPGGDVTEIGERGVN-ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
++ +TE+ R +SGGQ+QRV++ RA+ VF+ D+PLS LDA + ++
Sbjct: 119 RVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 328 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+ G T + VT+ + DRI +++ G++++ G+ +++ +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 120 bits (302), Expect = 5e-31
Identities = 48/232 (20%), Positives = 109/232 (46%), Gaps = 14/232 (6%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ + + + Y + G+ +P V ++G GAGK++ L+ + +V ++G+I+
Sbjct: 7 LEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 847 IDGFDIAKFGLMDLRKI-LGIIPQSPVLFSG-TVRFNL--DPFSEHSDADLWEALERAHL 902
+G DI + ++ + ++P+ +F TV NL ++ + LE
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
L ++ + G S G++Q+L++ RAL+ R K+L++DE + + + +
Sbjct: 125 L------FPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 963 QKTIREEFKS-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012
+ I++ + T+L++ + +L++G+++ ELL NE
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 104 bits (262), Expect = 1e-25
Identities = 43/210 (20%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--------------VSDASAVIRGT 228
I+L +P G +V ++G G GKT+ +SA+ G + G
Sbjct: 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83
Query: 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 288
TV +N++ G+ + D+ + L + + G
Sbjct: 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE----RLKQLGGT 139
Query: 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348
+SGG++Q +++ RA+ S + + D+P L + +VF+ + G T +LV
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA 199
Query: 349 HFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+V ++ G + EG +L +N
Sbjct: 200 LGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 119 bits (299), Expect = 8e-31
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 12/236 (5%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ ++V + V ++ I + V VG +G GKS++L + + + G +
Sbjct: 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLWEALERAHLKDA 905
I + + +G++ QS L+ N+ + + A +R
Sbjct: 59 IGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV--NQV 114
Query: 906 IRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965
L L + + S GQRQ +++ R L+ + +LDE + +D ++
Sbjct: 115 AEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIE 172
Query: 966 IRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
I + TM+ + H + D+I++LD+GRV + P EL F
Sbjct: 173 ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (244), Expect = 2e-23
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 34/235 (14%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP----- 217
+ ++N +W E +INLDI G V VG +G GK++L+ + G
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 218 -----VSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEP-------ARYEKAIDV 264
+ + V V Q ++ + +V +N+ FG R + +V
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 265 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324
L H LD P +SGGQ+QRV++ R + + VF+ D+PLS LDA +
Sbjct: 118 LQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 325 RQVFDRCIRG-ELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
Q+ R + G+T + VT+ + D+I+++ G V + G +L +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 117 bits (294), Expect = 2e-30
Identities = 46/214 (21%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
++ D+ + Y PVL ++ TI + V G G GK+++L T+ ++ +G I+
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEH-----SDADLWEALERA 900
+G I ++ + +P+ ++ +V L + + ++ +ALE
Sbjct: 60 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114
Query: 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960
+ D ++ S G + + L+ LL ++I VLD+ A+D +
Sbjct: 115 EVLDLKKK------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKH 162
Query: 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994
+ K+I E K ++II+ R CD L
Sbjct: 163 KVLKSILEILKEKGIVIISSREELSY-CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 104 bits (260), Expect = 6e-26
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
+ IR+ +D +P L I + I G++V G G GKT+L+ + L P+
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 223 AV-------IRGTVAYVPQ-VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLL 274
++G + ++P+ + +V D + ++ + K +D L
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNK-------NEIMDAL 111
Query: 275 PGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334
+V ++ ++ +S G +RV +A + N+++++ DDP+ A+D +V I
Sbjct: 112 ESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILE 170
Query: 335 ELSGKTRVLVTNQLHFLSQVDRIILVHE 362
L K V+++++ LS D +H+
Sbjct: 171 ILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 112 bits (282), Expect = 2e-28
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 24/240 (10%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I+ E + +++ L LS + + I+G TGAGK+ L + + GRIL
Sbjct: 2 IEIESLSRKWKNF---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSG-----TVRFNLDPFSEHSDADLWEALERAH 901
+DG D+ L + + + Q+ LF + F + + +
Sbjct: 59 LDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK 116
Query: 902 LKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961
++ + RN L L S G++Q ++L+RAL+ KIL+LDE +A+D RT
Sbjct: 117 IEHLLDRNPLTL-----------SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 962 IQKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018
++ + + T+L I H DRI ++ G++++ PEE+
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 93.2 bits (231), Expect = 8e-22
Identities = 56/232 (24%), Positives = 100/232 (43%), Gaps = 32/232 (13%)
Query: 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222
I I + W + + L N++L + G I+G TG GKT + + G P S
Sbjct: 2 IEIESLSRKWKNFS----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 223 AVI----------RGTVAYVPQVSWIF-NATVRDNILF----GSAFEPARYEKAIDVTSL 267
+ + +A+V Q +F + V+ N+ F +P R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 268 QHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327
+H LD P + +SGG++QRV++ARA+ +N + + D+PLSALD
Sbjct: 118 EHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 328 FDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
+ + + T + +T+ + DRI +V +G + + G E++
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 110 bits (277), Expect = 9e-28
Identities = 49/232 (21%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846
I ++V ++ L ++ I ++ GI+G +GAGK++ + + + G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 847 IDGFDIAKFGLMDLRKI---LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHL 902
D +A G + + +G++ Q+ L+ T N+ + E +R
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-- 121
Query: 903 KDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALI 962
++ + L + ++ S Q+Q ++L+RAL++ +L+LDE + +D R
Sbjct: 122 EEVAKI--LDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 963 QKTIRE--EFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
+ ++E T+L+++H I DR+ +L G++++ PE+L N
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 86.7 bits (214), Expect = 2e-19
Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS-- 219
I ++N + K + L N+N++I G I+G +G GKT+ + + G P +
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 220 -------------DASAVIRGTVAYVPQ-VSWIFNATVRDNILFG-------SAFEPARY 258
+ V Q + N T +NI F R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 259 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318
E+ + + H L+ P +SG Q+QRV++ARA+ + + + D+P S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 319 LDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSN 376
LDA + G T ++V++ + + DR+ ++ +G + + G EDL +
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
Query: 377 N 377
N
Sbjct: 231 N 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 95.5 bits (237), Expect = 2e-22
Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866
+ F + D ++G TGAGKS L + IV+ +RG + ++G DI L R+ +G
Sbjct: 18 VDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP--LPPERRGIGF 74
Query: 867 IPQSPVLFSGTVRF--NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924
+PQ LF + + + K LG+ +
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARL 127
Query: 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE--EFKSCTMLIIAHRL 982
S G+RQ ++L+RAL+ + ++L+LDE +AVD++T ++ + +R +L + H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 983 NTIID-CDRILLLDSGRVLEYDTPEELLSN 1011
D + ++ +GR++E +EL S
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 81.6 bits (201), Expect = 1e-17
Identities = 47/215 (21%), Positives = 91/215 (42%), Gaps = 32/215 (14%)
Query: 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----------VSDASAVIRGTVA 230
LN++ ++ ++G TG GK+ + + G + P ++ RG +
Sbjct: 16 LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRG-IG 73
Query: 231 YVPQVSWIFNA-TVRDNILFGSAFEPA-----RYEKAIDVTSLQHDLDLLPGGDVTEIGE 284
+VPQ +F +V NI +G R + + + H LD P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-------- 125
Query: 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVL 343
+SGG++QRV++ARA+ + + D+PLSA+D + + +
Sbjct: 126 ---RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 344 VTNQLHFLSQV-DRIILVHEGMVKEEGTFEDLSNN 377
VT+ L + + D + ++ G + E+G ++L +
Sbjct: 183 VTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 79.3 bits (194), Expect = 2e-17
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 28/186 (15%)
Query: 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 875
K+ I G G GK++++ + + + + +I+ + + S
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 876 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935
S + +E +
Sbjct: 62 KFFTSKKLVGSYGVNVQYFE----------------------------ELAIPILERAYR 93
Query: 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 995
A R K++++DE + ++ + I L
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 996 SGRVLE 1001
++E
Sbjct: 154 GAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 53.5 bits (127), Expect = 2e-08
Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 21/193 (10%)
Query: 194 VAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAF 253
+ I G G GKT+L+ ++ L A V +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 254 EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 313
+ + + A V I D
Sbjct: 61 S--------------KFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 314 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 373
+ + R I + V V I + ++ E
Sbjct: 107 EIGKMELFSKKFRDLVRQIMHD-PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP--- 162
Query: 374 LSNNGELFQKLME 386
N + + ++
Sbjct: 163 -ENRDVILEDILS 174
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 3e-07
Identities = 20/171 (11%), Positives = 53/171 (30%), Gaps = 7/171 (4%)
Query: 817 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 876
V + G G GK+++++ +++ + + + G + + + + S
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 877 TVRFNLDPFS------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930
D +E L L++A + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHR 981
+ R L ++L + AL+++ + + +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 45.3 bits (105), Expect = 3e-05
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Query: 21 QRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNS 80
Q + G ++E + + VK +A E++ + L+ K A + +N+
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 81 IPVL--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKR 138
+ + + V+ G + + G +T + +L PL L T + + S+ R
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 139 MEEFL 143
+ + +
Sbjct: 314 VFQLI 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 36/327 (11%), Positives = 98/327 (29%), Gaps = 18/327 (5%)
Query: 450 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 509
+ + YK + + ++ + + + + Y D +
Sbjct: 6 LQFVKPYK------YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHL 59
Query: 510 LLSFGQVLVTLA---------NSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGR 560
++ G L Y +S + + + + F+ N +G+
Sbjct: 60 TIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQ 119
Query: 561 IINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYL 620
+I+R D+ + + ++ ++ + A + + +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 621 YYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLV 680
+ R++ R S + V E + G+S ++++ D A K + L
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 681 NMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 740
+ N + + V + + A + T+ + Y + L
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYL---AISGSITVGTLAAFVGYLELLFGPLRR 296
Query: 741 VLRLASLAENSLNAVERVGNYIELPSE 767
++ + S +++RV I+ +
Sbjct: 297 LVASFTTLTQSFASMDRVFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 23/149 (15%), Positives = 46/149 (30%), Gaps = 2/149 (1%)
Query: 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDE 60
+ + R + ++K + ++L V + + + V N
Sbjct: 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKM 228
Query: 61 LSWFRKAQFLAACNSFILNSIPVLVT--VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFP 118
K ++ + I+ I L V+ F + LT S L P
Sbjct: 229 RLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRP 288
Query: 119 LFMLPNMITQVVNANVSLKRMEEFLLAEE 147
L L N+ Q + + + L +E+
Sbjct: 289 LKSLTNVNAQFQRGMAACQTLFAILDSEQ 317
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 28/318 (8%), Positives = 91/318 (28%), Gaps = 7/318 (2%)
Query: 450 FKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYS 509
+ ++ +K +++ + L + L D KT +
Sbjct: 8 WPTIAPFK------AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV 61
Query: 510 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDL 569
++ + + IS + + + ++
Sbjct: 62 VIGLMILRGITSYISSYCISWVSGKVVMTMRR-RLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 570 GDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREV 629
D ++ + + V + S L ++ S + L++L + + ++
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 630 KRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 689
+ + ++ + A L + + + + + L M +
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 690 IRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 749
I I+ + A + + A T+ ++ S + + L ++ + + +
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 750 NSLNAVERVGNYIELPSE 767
+ A + + ++ E
Sbjct: 301 RGMAACQTLFAILDSEQE 318
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 37.0 bits (84), Expect = 0.004
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 816 KVGIVGRTGAGKSSMLNTL 834
KV I GR AGKSS+LN L
Sbjct: 3 KVVIAGRPNAGKSSLLNAL 21
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1171 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.78 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.46 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.23 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.11 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.99 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.97 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.88 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.77 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.66 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.37 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.58 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.51 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.29 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.69 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.5 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.42 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.32 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.3 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.21 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.21 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.13 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.07 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.03 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.02 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.97 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.94 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.83 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.82 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.78 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.74 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.71 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.68 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.63 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.62 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.55 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.54 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.48 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.48 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.45 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.45 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.32 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.32 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.27 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.27 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.26 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.25 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.24 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.14 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.14 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.11 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.1 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.04 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.03 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.01 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.0 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.0 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.98 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.92 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.91 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.9 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.78 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.76 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.66 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.61 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.59 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.54 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.52 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.52 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.49 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.43 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.41 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.4 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.37 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.35 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.33 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.31 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.31 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.3 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.28 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.27 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.25 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.24 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.23 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.21 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.19 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.16 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.14 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.14 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.13 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.11 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.1 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.09 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.09 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.08 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.08 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.05 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.01 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.01 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.93 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.91 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.91 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 93.9 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.88 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.85 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.83 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.82 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.79 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.79 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.77 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.74 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.68 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.65 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.65 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.63 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.59 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.55 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.52 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.48 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.43 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.41 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.3 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.3 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.28 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.27 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.2 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.19 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.18 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.16 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.13 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.11 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.01 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.0 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.96 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.92 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.89 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.89 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.88 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.83 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.82 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.71 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.69 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.64 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.62 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.6 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.6 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.57 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.57 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.54 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.52 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.48 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.45 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.45 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.39 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.35 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.26 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.23 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.23 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.22 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.21 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.21 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.14 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.13 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.06 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.04 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.0 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.96 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.94 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.92 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.88 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.82 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.81 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.81 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.8 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.79 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.74 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.72 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.7 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.67 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.67 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.67 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.66 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.58 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.57 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.56 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.53 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.49 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.4 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.39 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.37 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.34 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.31 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.26 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.23 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.22 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.18 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.15 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.08 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.05 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.03 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.0 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.0 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.99 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.91 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.87 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.76 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.69 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.68 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.67 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.65 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.62 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.6 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.49 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.47 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.47 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.37 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.36 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.35 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.33 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.29 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 90.28 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.26 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.24 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.23 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.17 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.14 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.11 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.05 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.04 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.04 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.02 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.01 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.01 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.99 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.94 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.91 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.76 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.74 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.71 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.69 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.59 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.56 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.49 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 89.46 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.45 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.43 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.41 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.33 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.33 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.23 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.22 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.14 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.14 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.12 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.1 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.09 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.08 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.06 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.06 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.04 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.04 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.03 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.03 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.03 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.98 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 88.97 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.84 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.82 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.74 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.71 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.61 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.58 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.55 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.51 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.48 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.47 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.47 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.46 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 88.38 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.35 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.31 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.3 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.13 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 87.99 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.99 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.97 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.92 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 87.89 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.86 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 87.82 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.81 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.76 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.76 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.69 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.65 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 87.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.56 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.55 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.52 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.49 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.46 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.44 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.42 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.41 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.37 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 87.37 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.33 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.3 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.1 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.03 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.03 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.01 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 86.87 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.85 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 86.59 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.54 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 86.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.51 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.39 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.28 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.23 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.19 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.12 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.83 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.8 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.77 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 85.56 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.56 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.52 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.47 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.38 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.33 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.31 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.23 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.23 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.23 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.07 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.05 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.03 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.7 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.57 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 84.22 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.2 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 84.02 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.98 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 83.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.57 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 83.57 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 83.46 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 83.45 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.34 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 83.32 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.22 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.93 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.5 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 82.49 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.34 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.33 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 82.31 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 81.66 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.33 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 80.83 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.6 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.5 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 80.3 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 80.19 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-60 Score=513.61 Aligned_cols=237 Identities=34% Similarity=0.549 Sum_probs=227.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+|+||||+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|++.++..++|++|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 89999999998766689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
|||+|.+|++||++||.+..+ .++++++++++.+++.+++..+|.|+++.+++.|.+|||||||||+|||||+++|+||
T Consensus 82 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~il 161 (241)
T d2pmka1 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL 161 (241)
T ss_dssp ECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchh
Confidence 999999999999999987654 5788999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
|||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||||+||++|+|++.|+|+||++++.+.|.++++.+
T Consensus 162 ilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 162 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999889999999999999988999999999999999999999998888898887653
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-59 Score=510.70 Aligned_cols=239 Identities=34% Similarity=0.567 Sum_probs=226.9
Q ss_pred CCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh
Q 001055 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
.+|.|+|+||+|+|+++.+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|++.++..++|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 45789999999999876668999999999999999999999999999999999999999999999999999999999999
Q ss_pred heEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 863 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+|+||||+|.+|++||++||.++. ..++++++++++.+++.+++.++|.|+++.+++.+.+|||||||||+|||||+++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4588999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||||++|++|+|++.|+|+||+++ .+.|.+++.
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~~ 251 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 251 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999998889999999999999988999999999999999999999986 456777765
Q ss_pred h
Q 001055 1022 S 1022 (1171)
Q Consensus 1022 ~ 1022 (1171)
.
T Consensus 252 ~ 252 (255)
T d2hyda1 252 I 252 (255)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.5e-59 Score=505.84 Aligned_cols=239 Identities=36% Similarity=0.568 Sum_probs=226.8
Q ss_pred CCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh
Q 001055 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
..|.|+|+||+|+|+++..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++.++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 34679999999999876668999999999999999999999999999999999999999999999999999999999999
Q ss_pred heEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 863 ILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||||+|.+|++|+++|+.+.. ..++++++++++.+++.++++.+|.|+++.+++.+.+|||||||||+|||||++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 999999999999999999987653 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
+|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.+..||||+||++|+|++.|+|+||+++ .+.|.+++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999999999999999999999998889999999999999988999999999999999999999987 46788887
Q ss_pred Hh
Q 001055 1021 QS 1022 (1171)
Q Consensus 1021 ~~ 1022 (1171)
..
T Consensus 249 ~~ 250 (253)
T d3b60a1 249 KM 250 (253)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-58 Score=497.77 Aligned_cols=238 Identities=29% Similarity=0.479 Sum_probs=221.6
Q ss_pred CCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 783 SSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.+|.|+|+||+|+|++. ..++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++.++...+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 45779999999999753 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++|+||||+|.+|++||++|+.+.. .....++.++++.+++.++++.+|.|+++.+++.+.+|||||||||+|||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 9999999999999999999998652 34677888899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
++|+|||||||||+||+.++..+++.|+++.+ ++|+|+||||++.++.||||+||++|+|++.|+|+||+++. +.|+
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~-~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT-SHHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC-cHHH
Confidence 99999999999999999999999999988654 78999999999999889999999999999999999999874 6787
Q ss_pred HHHH
Q 001055 1018 KMVQ 1021 (1171)
Q Consensus 1018 ~~~~ 1021 (1171)
+|++
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7753
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.8e-58 Score=499.98 Aligned_cols=234 Identities=33% Similarity=0.561 Sum_probs=220.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||||+|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++...+|++|||
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 7999999999764 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||+|.+|++||++|+.+.. ..++++++++++.+++.+++..+|.++++.+++.|.+|||||||||+|||||+++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997643 3578889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
||||||||+||+.+++.+++.|+++.+++|+|+||||++.+..||||+||++|+|++.|+|+||+++ .+.|.+++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHH
Confidence 9999999999999999999999999889999999999999988999999999999999999999986 4567766654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-52 Score=452.07 Aligned_cols=223 Identities=29% Similarity=0.462 Sum_probs=204.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++||||+|+. .++++|+||||+|++||++||+||||||||||+++|+|+++|++|.+.. +++.||
T Consensus 2 I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 2 ITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEEEEEeCC-CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 899999999974 3567999999999999999999999999999999999999999886532 345799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
||||+|++|++||+|||.++.+ .+.+++..+++.+++.+++..+|.+++|.+|++|.+|||||||||+|||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 9999999999999999999865 567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-chHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 387 (1171)
||||||||+||+.+++.+++.+.+. .+++|+|+||||++.+..||||++|++|+|+++|++++++++ ...|++++..
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~ 238 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKI-CKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHH-HTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999987665 358999999999999999999999999999999999999877 4578887754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.8e-52 Score=454.73 Aligned_cols=224 Identities=31% Similarity=0.484 Sum_probs=207.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++||+|+|++ .++++|+||||+|++||++||+||||||||||+++|+|+++|++|.+.. +++.
T Consensus 15 g~I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 15 GRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CEEEEEEEEEEeCC-CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence 35999999999985 3578999999999999999999999999999999999999999886532 3457
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
|+||+|+|++|++||+|||.+|.+ ..++++.++++.+++.+++..+|.|++|.+|++|.+|||||||||+|||||+++|
T Consensus 94 i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p 173 (255)
T d2hyda1 94 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNP 173 (255)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCC
T ss_pred eeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999865 4678889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+|||||||||+||+.+++.+++.+.+.. +++|+|+||||++.+..||||++|++|+|++.|++++++++.+.|+.++.
T Consensus 174 ~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~ 251 (255)
T d2hyda1 174 PILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251 (255)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999999776543 58999999999999999999999999999999999999999888988864
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.2e-51 Score=449.32 Aligned_cols=224 Identities=31% Similarity=0.501 Sum_probs=207.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|.+.. ++..|
T Consensus 13 ~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 91 (253)
T d3b60a1 13 DLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91 (253)
T ss_dssp CEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheE
Confidence 59999999999853 568999999999999999999999999999999999999999886532 34469
Q ss_pred EEEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+||||+|++|++|+++|+.++. ..+.+++.++++.+++.++++.+|.|++|.+++++.+|||||||||+|||||+++|
T Consensus 92 ~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p 171 (253)
T d3b60a1 92 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 171 (253)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999985 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||||+||+.+++.+++.+.+.. +++|+|+||||++.+..||||++|++|+|+++|++++++++.+.|++++..
T Consensus 172 ~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~~~ 250 (253)
T d3b60a1 172 PILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 250 (253)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred CEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 9999999999999999999999776654 589999999999999999999999999999999999999988889988764
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-51 Score=449.35 Aligned_cols=224 Identities=25% Similarity=0.406 Sum_probs=204.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++||||+|++..++++|+||||+|++||++|||||||||||||+++|+|+++|++|.+.. +++.|
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 599999999998766678999999999999999999999999999999999999999886532 34569
Q ss_pred EEEecCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+||+|+|++|++||+|||.+|.. ........+.+.+++...+..+|.++++.+++++.+|||||||||+|||||+++|
T Consensus 91 ~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p 170 (251)
T d1jj7a_ 91 AAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKP 170 (251)
T ss_dssp EEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCC
T ss_pred hhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCC
Confidence 99999999999999999999843 3456677788889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+|+|||||||+||+.++..+++.+.+... .++|+|+||||++.+..||||++|++|+|+++|++++++++.+.|+.++
T Consensus 171 ~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l~ 249 (251)
T d1jj7a_ 171 CVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMV 249 (251)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred cEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHh
Confidence 99999999999999999999998776543 4899999999999999999999999999999999999999888888775
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.1e-52 Score=449.19 Aligned_cols=223 Identities=26% Similarity=0.463 Sum_probs=204.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i 229 (1171)
.|+++||||+|++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|.+. .++++|
T Consensus 1 mle~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 78 (242)
T d1mv5a_ 1 MLSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQI 78 (242)
T ss_dssp CEEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTC
T ss_pred CEEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhhe
Confidence 3899999999974 45799999999999999999999999999999999999999998653 246679
Q ss_pred EEEecCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
|||||+|++|++||+||+.++.. ...+...++++.+++...+..+|.+.+|.+|++|.+|||||||||+|||||+++|
T Consensus 79 ~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p 158 (242)
T d1mv5a_ 79 GFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (242)
T ss_dssp CEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998743 4567788889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||||+||+.+++.+++.+.+.. +++|+|+||||++.+..||||++|++|+|+++|++++++++.+.|++++..
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 159 KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred CEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHH
Confidence 9999999999999999999999776654 689999999999999999999999999999999999999999999888753
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.4e-51 Score=436.68 Aligned_cols=221 Identities=21% Similarity=0.348 Sum_probs=188.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+.++. |++||
T Consensus 6 ~I~v~nlsk~yg~~--~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECCE--EEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEE
Confidence 39999999999754 799999999999999999999999999999999999999999999999999988764 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|.. ||++|+.+... .+.+++.+ .+.++++. .|++...++.+.+||||||||++|||||+.+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~ 154 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 154 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHhhhccC
Confidence 99999999965 99999986542 34443332 23344554 3677777888899999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+||||||||++||+.+...+++.|+++.+ ++|+|+||||++++.. ||||++|++|+|++.|+|+|+.+++...|.
T Consensus 155 P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 155 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999999999999999999999999999753 8999999999999987 999999999999999999999988765544
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-51 Score=434.76 Aligned_cols=215 Identities=22% Similarity=0.337 Sum_probs=161.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.++ .|++|||
T Consensus 1 Iev~nv~k~yg~~--~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceeee
Confidence 6899999999754 79999999999999999999999999999999999999999999999999988775 4578999
Q ss_pred EcCCcccccc-cHHhhccCCCCC---C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~---~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. ||+||+.+.... . ++.+.++++..++.+ ..+..+.+|||||||||+|||||
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----------~~~~~~~~LSGGqkQRvaiAraL 145 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGRTL 145 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHH
T ss_pred eccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChh-----------hhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999965 999999764321 1 233445555554444 44445578999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
+.+|++|||||||++||+.+.+.+++.|+++. .++|+|+||||++++.. ||||++|++|+|++.|+|+|+++++...
T Consensus 146 ~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~ 225 (232)
T d2awna2 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADR 225 (232)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCH
Confidence 99999999999999999999999999999864 48999999999999988 9999999999999999999999876554
Q ss_pred H
Q 001055 1016 F 1016 (1171)
Q Consensus 1016 ~ 1016 (1171)
|
T Consensus 226 ~ 226 (232)
T d2awna2 226 F 226 (232)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.5e-50 Score=429.81 Aligned_cols=214 Identities=25% Similarity=0.367 Sum_probs=188.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|||++|+. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+.++. |++|||
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhccee
Confidence 799999999964 489999999999999999999999999999999999999999999999999887754 678999
Q ss_pred EcCCcccccc-cHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 867 IPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|||++.+|.. ||+||+.+. ....++++.++++.. ++....++.+.+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHh-----------cchhhHhCChhhCCHHHhcchhhhhhhhcc
Confidence 9999999965 999999642 122345555555554 444555666778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|+||||||||++||+.+...+++.|+++. .+.|+|+||||++++.. ||||++|++|+|++.|+|+|+++++...+
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 99999999999999999999999999874 37899999999999988 99999999999999999999998765443
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.9e-50 Score=431.91 Aligned_cols=224 Identities=22% Similarity=0.345 Sum_probs=191.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~ 862 (1171)
.|+++||+++|+.+...+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|+++...+. ...|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 389999999996544479999999999999999999999999999999999999999999999999977553 34577
Q ss_pred heEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||||||++.+|+. ||+||+.+.. ..+..+..+. +.+.++. .|++...+..+.+|||||||||+|||||
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~--~gL~~~~~~~p~~LSGGqkQRvaiARaL 155 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKI--LDIHHVLNHFPRELSGAQQQRVALARAL 155 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHH-----HHHHHhh--cChHhhhhCChhhCCHHHHhHHHHHhHH
Confidence 89999999999976 9999997432 2333332221 2333443 3566666777789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
+.+|+||||||||++||+.+...+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+|+|+..++...
T Consensus 156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~ 235 (242)
T d1oxxk2 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235 (242)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSH
T ss_pred hhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCH
Confidence 999999999999999999999999999998753 8999999999999877 9999999999999999999999876554
Q ss_pred H
Q 001055 1016 F 1016 (1171)
Q Consensus 1016 ~ 1016 (1171)
|
T Consensus 236 ~ 236 (242)
T d1oxxk2 236 Q 236 (242)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.8e-50 Score=432.85 Aligned_cols=219 Identities=21% Similarity=0.337 Sum_probs=188.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----Hh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LR 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r 861 (1171)
.|+++||+++|++. +||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .|
T Consensus 3 ~i~v~nl~k~yg~~--~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred cEEEEeEEEEECCE--EEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccc
Confidence 38999999999753 6999999999999999999999999999999999999999999999999997765443 36
Q ss_pred hheEEEcCCcccccc-cHHhhccCC---CCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
++||||||++.+|+. ||+||+.+. ...+.++ +.+.++.+ |+....+..+.+||||||||++
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~-----------~l~~~~~~~p~~LSGGqkQRv~ 149 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----------GLTELLNRKPRELSGGQRQRVA 149 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----------TCGGGTTCCGGGSCHHHHHHHH
T ss_pred ccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHH
Confidence 789999999999976 999999642 1223333 33344443 3444556666789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||+|||+.+...|++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+|+|++.
T Consensus 150 IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 150 LGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp HHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 8999999999999988 99999999999999999999998
Q ss_pred cCCChHH
Q 001055 1011 NEGSSFS 1017 (1171)
Q Consensus 1011 ~~~~~~~ 1017 (1171)
++...|.
T Consensus 230 ~P~~~~~ 236 (240)
T d1g2912 230 KPANTFV 236 (240)
T ss_dssp SCSBHHH
T ss_pred CCCCHHH
Confidence 7765553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-50 Score=430.56 Aligned_cols=219 Identities=26% Similarity=0.435 Sum_probs=189.6
Q ss_pred EEEEeeEEEeCCCCC--CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~--~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++||+++|+.+.. .||+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|+++...+..+ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 799999999975432 4799999999999999999999999999999999999999999999999999888665 56
Q ss_pred hheEEEcCCcccccc-cHHhhccCC---CCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPF---SEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
++||||||++.+|.. ||+||+.+. ...+ ++.+.++++.+++ ....+..+.+|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL-----------~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGL-----------GDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHST-----------TTTTSSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHH
Confidence 789999999999965 999998631 1122 2344555555444 34445566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+...|++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+|+|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998753 7999999999999988 99999999999999999999998
Q ss_pred cCCChH
Q 001055 1011 NEGSSF 1016 (1171)
Q Consensus 1011 ~~~~~~ 1016 (1171)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 765544
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-48 Score=415.09 Aligned_cols=212 Identities=24% Similarity=0.349 Sum_probs=178.1
Q ss_pred EEEEeeEEEeCCCCC--CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----
Q 001055 787 IKFEDVVLRYRPELP--PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~--~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 860 (1171)
|+++||+++|+.+.. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999975432 37999999999999999999999999999999999999999999999999999988765
Q ss_pred hhheEEEcCCcccccc-cHHhhccC---C---CCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDP---F---SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~---~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqkqrl 932 (1171)
|++||||||++.+|.. ||+||+.+ + ...+..+..+. +.+.++. .++.. ..+..+.+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~--~~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKM--AELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHH--TTCCGGGTTCCGGGSCHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHH-----HHHHHHh--hchhhhhhcCChhhCCHHHHHHH
Confidence 4569999999998865 99999863 1 12233322211 2223333 24433 34556678999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecCh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~ 1005 (1171)
+|||||+.+|+||||||||++||+.+...+++.|+++. .++|+|+||||+++++.||||++|++|+|+++|++
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999975 37899999999998867999999999999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-49 Score=438.73 Aligned_cols=210 Identities=24% Similarity=0.366 Sum_probs=191.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+|+|+++. + +|+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|+
T Consensus 38 ~i~~~~~~~~--g--~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~ 100 (281)
T d1r0wa_ 38 NVSFSHLCLV--G--NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVS 100 (281)
T ss_dssp --CHHHHHHT--T--CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEE
T ss_pred cEEEEEcCCC--C--CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEE
Confidence 4666666543 2 3799999999999999999999999999999999999999999999997 499
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
|+||++.+|++||++|+.+.....+..+.++++.+.+...+..+|.++++.+++.+.+|||||||||+|||||+++|+||
T Consensus 101 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 101 FCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp EECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred EEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch
Confidence 99999999999999999887777788899999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHH-HHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcC
Q 001055 946 VLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
||||||++||+.+++.+++. +.....++|+|+||||++.+..||||++|++|+|++.|+|+||++..
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~ 248 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR 248 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC
T ss_pred hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccC
Confidence 99999999999999998876 44444689999999999999889999999999999999999998653
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1e-48 Score=426.24 Aligned_cols=219 Identities=26% Similarity=0.359 Sum_probs=186.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh--------
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-------- 857 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-------- 857 (1171)
.|+++||+++|++. +||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...++
T Consensus 2 ~Lev~nl~k~yg~~--~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECCE--EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 38999999999754 79999999999999999999999999999999999999999999999999965432
Q ss_pred -----HHHhhheEEEcCCcccccc-cHHhhccCC----CCCCHHH----HHHHHHHhcHHHHHHHccCCcchh-hhcCCC
Q 001055 858 -----MDLRKILGIIPQSPVLFSG-TVRFNLDPF----SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQ-VSEAGE 922 (1171)
Q Consensus 858 -----~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~ 922 (1171)
...|++||||||+|.+|.. ||.+|+.+. ......+ +.++++.++ +... .+..+.
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~p~ 148 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVG-----------IDERAQGKYPV 148 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-----------CCHHHHTSCGG
T ss_pred cHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcC-----------CchhhhccCcc
Confidence 2467889999999999965 999998532 1223322 333344433 3332 233456
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
+|||||||||+|||||+.+|+||||||||+|||+.+...|++.|+++. +|+|+|+||||++++.. ||||+||++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999876 47899999999999987 9999999999999
Q ss_pred EecChhHHhhcCCChHH
Q 001055 1001 EYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 1001 ~~g~~~el~~~~~~~~~ 1017 (1171)
+.|+|+|+++++...|.
T Consensus 229 ~~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 229 EEGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EEECHHHHHHSCCSHHH
T ss_pred EEcCHHHHHhCCCCHHH
Confidence 99999999988766554
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.9e-48 Score=417.35 Aligned_cols=218 Identities=22% Similarity=0.384 Sum_probs=184.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh-he
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 864 (1171)
.|+++||+++|++. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+.+..++ .|
T Consensus 6 ~Lev~~l~k~yg~~--~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 6 VLEVQSLHVYYGAI--HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred EEEEeeEEEEECCE--EEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 48999999999754 6999999999999999999999999999999999999999999999999999988777644 49
Q ss_pred EEEcCCcccccc-cHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+|+||++.+|+. ||+||+.+.. ....+...+.++. .+..+ .++....++.+.+|||||||||+|||||+.+
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-----IFSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHH-----HHHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHH-----HHHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999975 9999986432 1122222222221 11111 1334445566778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.+.+.+++.|+++. +|+|||+|||+++++.. ||||++|++|+|++.|+|+|+.++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999875 47999999999999887 999999999999999999999864
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-47 Score=413.76 Aligned_cols=218 Identities=25% Similarity=0.445 Sum_probs=190.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
|.|+++||+++|+.. +||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+ .+..+|+.+
T Consensus 1 gaI~v~nl~k~yg~~--~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CCEEEEeEEEEECCE--EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhE
Confidence 469999999999764 79999999999999999999999999999999999999999999999999987 567789999
Q ss_pred EEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|||||++.+|.. |++||+.++. .....++.+.++. .++. .+++...++...+||||||||++|||||+.
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~--~~l~~~~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEI--AGLGEKIKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHH--HCCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHh--CCCHHHHhhhhhhCCHHHHHHHHHHHHHhc
Confidence 999999988865 9999996432 2344444433332 2222 255666677778999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+|+||||||||+|||+.+++.+++.|+++. .|+|||++||+++++.. ||||++|++|+|++.|+|+|+.++.
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 999999999999999999999999999875 57999999999999988 9999999999999999999998654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-48 Score=429.12 Aligned_cols=208 Identities=38% Similarity=0.703 Sum_probs=193.1
Q ss_pred CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHH
Q 001055 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 256 (1171)
Q Consensus 177 ~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~ 256 (1171)
++|+|+||||+|++||++||+||||||||||+++|+|+++|++|.+ .+.++|+|+||++++|++||+|||.|+...+..
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 126 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII-KHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEY 126 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-ECCSCEEEECSSCCCCSEEHHHHHTTTSCCCHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEE-EECCEEEEEeccccccCceeeccccccccccch
Confidence 3689999999999999999999999999999999999999998754 466789999999999999999999999888888
Q ss_pred HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc
Q 001055 257 RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 336 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~ 336 (1171)
++..+++.+.+..++..++.++.+.+++++.+|||||||||+|||||+++|+||||||||++||+.+.+.+++.++....
T Consensus 127 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~ 206 (281)
T d1r0wa_ 127 RYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM 206 (281)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987666556
Q ss_pred CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 337 SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 337 ~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
.++|+|+|||+++.+..||||++|++|+|++.|+++++++..+.|...+
T Consensus 207 ~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 207 ANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp TTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred CCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence 7899999999999999999999999999999999999987666665544
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.8e-47 Score=415.77 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=185.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh-he
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 864 (1171)
.|+++||+++|++. +||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...++.+.++ .|
T Consensus 4 iL~v~nlsk~yg~~--~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred eEEEEEEEEEECCe--EEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 38999999999754 6999999999999999999999999999999999999999999999999999999988765 49
Q ss_pred EEEcCCcccccc-cHHhhccCCCC----------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE----------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~----------------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
+|+||++.+|.. ||+||+.+... ..+++.. ..+.+.++. .+++...+....+||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG 154 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEF--LKLSHLYDRKAGELSGG 154 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHH--TTCGGGTTSBGGGSCHH
T ss_pred CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHH-----HHHHHHHHh--cCcchhccCchhhCCcH
Confidence 999999998855 99999954210 0111111 112233333 35666666777889999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||||+|||||+.+|++|||||||+|||+.+.+.+++.|+++. +|+|||+||||++++.. ||||+||++|+|++.|+|
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~ 234 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecH
Confidence 9999999999999999999999999999999999999998875 57999999999999977 999999999999999999
Q ss_pred hHHhh
Q 001055 1006 EELLS 1010 (1171)
Q Consensus 1006 ~el~~ 1010 (1171)
+|+.+
T Consensus 235 ~e~~~ 239 (254)
T d1g6ha_ 235 EEEIK 239 (254)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.6e-46 Score=396.13 Aligned_cols=213 Identities=27% Similarity=0.415 Sum_probs=182.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+++ ++.++|+.- .+ ||||++. ||++||+||||||||||+++|+|+++|++|+|.++|+|+.++++. |++|||
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCcee
Confidence 566 578888642 24 8999995 689999999999999999999999999999999999999988764 678999
Q ss_pred EcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||++.+|+. ||+||+.+... ....+..+ .+.+.++. .|+....+..+.+|||||||||+|||||+.+|+|
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~-----~v~~~l~~--~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~i 147 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDR-----RVREMAEK--LGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHH-----HHHHHHHT--TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred eccchhhcccchhhHhhhhhhcccCHHHHHH-----HHHHHHHh--cCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCc
Confidence 9999999975 99999976432 23333221 23444544 3666677778889999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|||||||+|||+.+...+++.|+++.+ +.|+|+|||+++++.. ||||++|++|+|++.|+|+|+++.+..
T Consensus 148 lllDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~ 220 (240)
T d2onka1 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCS
T ss_pred eEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCH
Confidence 999999999999999999999998753 7999999999999988 999999999999999999999976543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.9e-46 Score=398.23 Aligned_cols=204 Identities=25% Similarity=0.346 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
..|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.||
T Consensus 5 ~~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig 81 (239)
T d1v43a3 5 VEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81 (239)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEE
T ss_pred CeEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEE
Confidence 3599999999996 357999999999999999999999999999999999999999986532 233599
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||||++.+| ..||+||+.|+.. .+. ++..++++.+++.+..+..| .+|||||||||+||||
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARA 150 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHH
T ss_pred EEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHhh
Confidence 999999998 6799999998742 232 34455677777765544443 5899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
|+.+|+||||||||++|||.+++.+++.+.+..++ |+|+|+||||++++.. ||||++|++|+|+++|+++++.+++
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999988876544 9999999999999865 8999999999999999999997663
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-46 Score=399.66 Aligned_cols=201 Identities=31% Similarity=0.438 Sum_probs=147.5
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++|+|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.||||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeee
Confidence 68999999996 357999999999999999999999999999999999999999986532 23469999
Q ss_pred ecCCCCC-cccHHHHHhcCCCC-----C--HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSAF-----E--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~~-----~--~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
||++.+| ..||+|||.|+... + .+++.++++..++.+..+..| .+|||||||||+|||||+
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 9999987 67999999987432 1 244666777777766555544 589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
.+|++|+|||||++|||.+++.+++.+.+.. ..|+|+|+||||++++.. ||||++|++|+|++.|+++++.++
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999887764 459999999999999876 899999999999999999998765
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.1e-46 Score=398.27 Aligned_cols=205 Identities=26% Similarity=0.372 Sum_probs=177.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 226 (1171)
.|+++|++++|+. ++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 4899999999974 3457999999999999999999999999999999999999999886422 24
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 227 GTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
++||||||++.+| ..||+|||.|+.. .+. +++.++++.+++.+..+..| .+|||||||||+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHH
Confidence 5699999999998 5799999998732 222 45667788888866555544 589999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|++|||||||++|||.++..+++.+.+..+ .|.|+|+||||++++.. ||||++|++|+|+++|+++++.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999998877644 49999999999999854 89999999999999999999976
Q ss_pred cc
Q 001055 377 NG 378 (1171)
Q Consensus 377 ~~ 378 (1171)
++
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.2e-46 Score=395.46 Aligned_cols=201 Identities=28% Similarity=0.401 Sum_probs=175.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|+|++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.|||
T Consensus 1 mi~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~ 76 (229)
T d3d31a2 1 MIEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAF 76 (229)
T ss_dssp CEEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEE
T ss_pred CEEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhccee
Confidence 3899999999963 4899999999999999999999999999999999999999986533 2235999
Q ss_pred EecCCCCC-cccHHHHHhcCC----CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 232 VPQVSWIF-NATVRDNILFGS----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
|||++.+| ..||+|||.|+. ..+.+++.++++..++.+..+. ...+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSGG~~QRvaiAraL~~~ 145 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-----------NPLTLSGGEQQRVALARALVTN 145 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTS-----------CGGGSCHHHHHHHHHHHHTTSC
T ss_pred eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhC-----------ChhhCCHHHhcchhhhhhhhcc
Confidence 99999998 579999998762 2345677777877777654443 3468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|++|||||||++|||.++..+++.+.+..+ .|.|+|+||||++++.. ||||++|++|+++++|+++++.++
T Consensus 146 P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999998877644 58999999999998875 899999999999999999999765
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.7e-46 Score=397.78 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=175.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
.|+++|++++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 589999999996 357999999999999999999999999999999999999999886532 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++.||||||+|.+| ..||+||+.++. ..+. +++.+.++.+++.+..+..| .+|||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHH
Confidence 35699999999998 579999998862 2222 34566777888766544443 58999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++|||.++..+++.+.+..++ |.|+|+||||++++.. ||||++|++|+|++.|+++++.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999988776554 9999999999999865 8999999999999999999987
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
.+
T Consensus 229 ~~ 230 (240)
T d1g2912 229 DK 230 (240)
T ss_dssp HS
T ss_pred hC
Confidence 65
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-46 Score=397.23 Aligned_cols=205 Identities=26% Similarity=0.404 Sum_probs=174.7
Q ss_pred cEEEEeeEEEcCCCCCC-CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 162 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~-~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
.|+++|++++|+.+... .+|+||||+|++||+++|+||||||||||+++|+|+.+|++|.+.. .
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 37999999999754222 4799999999999999999999999999999999999999886532 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcC-----CCCC--HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFG-----SAFE--PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g-----~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
|+.||||||++.++ ..||+|||.++ .+.+ .+++.+.++.+++.+..+..| .+|||||||||
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRv 149 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRV 149 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHH
T ss_pred hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 24599999999887 57999999875 1222 245667778887765444333 58999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++|||.++..+++.+.+..++ |.|+|+||||+.++.. ||||++|++|+|+++|+++++.
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999988776554 9999999999999875 8999999999999999999987
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
++
T Consensus 230 ~~ 231 (240)
T d3dhwc1 230 SH 231 (240)
T ss_dssp CS
T ss_pred hC
Confidence 54
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.7e-45 Score=389.48 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=163.5
Q ss_pred cEEEEeeEEEcCCCCC-CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------
Q 001055 162 AISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~-~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------- 224 (1171)
.|+++|++|+|+.+.. ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 3899999999974322 24799999999999999999999999999999999999999986532
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCC------CCCH-H---HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGS------AFEP-A---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~------~~~~-~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..||||+|++.++ ..||+||+.++. ..+. + ++.+.++..++.+.+ ......+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGGq 150 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQ 150 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhh----------hcCChhhCCHHH
Confidence 123599999999886 679999998752 1222 2 233344444443211 122336899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecCh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~ 371 (1171)
||||+|||||+.+|++|||||||++|||.++..+++.+.+..+ .|+|+|+||||++++..||||++|++|+|+++|+.
T Consensus 151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999999998887654 48999999999998888999999999999998863
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.1e-44 Score=387.98 Aligned_cols=202 Identities=28% Similarity=0.439 Sum_probs=174.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.|+++|++++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999996 357999999999999999999999999999999999999999886532
Q ss_pred --------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHH-hcCCCCCccccCCCC
Q 001055 225 --------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDL-DLLPGGDVTEIGERG 286 (1171)
Q Consensus 225 --------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~-~~~~~~~~~~i~~~g 286 (1171)
.+.+||||||+|.++ ..||.|||.++. ..+. ++..++++.+++.+.. +..|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------
Confidence 123599999999987 579999998751 2222 3456667777876543 3333
Q ss_pred CccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.+.+...+|+|+|+||||++++.. ||||++|++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4899999999999999999999999999999999999999999887777779999999999999875 899999999999
Q ss_pred EEecChhHHhhc
Q 001055 366 KEEGTFEDLSNN 377 (1171)
Q Consensus 366 ~~~g~~~~l~~~ 377 (1171)
+++|++++++++
T Consensus 228 v~~g~~~ev~~~ 239 (258)
T d1b0ua_ 228 EEEGDPEQVFGN 239 (258)
T ss_dssp EEEECHHHHHHS
T ss_pred EEEcCHHHHHhC
Confidence 999999999876
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.2e-43 Score=382.84 Aligned_cols=208 Identities=23% Similarity=0.361 Sum_probs=169.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
..|+++|++++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 5 ~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 4689999999996 357999999999999999999999999999999999999999987532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC--CCHHHHHHHHHH-cCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA--FEPARYEKAIDV-TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~--~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
.|+|+||++.+| ..||+||+.++.. .+.+...+.++. ..+...+.. .......+|||||||||+|||||
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~LSGG~~Qrv~iAraL 154 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-------RLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-------TTTSBSSSSCHHHHHHHHHHHHH
T ss_pred cccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHH-------HHhCchhhCCHHHHHHHHHHHHH
Confidence 499999999988 5799999987632 122222222211 111111211 12334568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+.+|++|||||||+||||.+++++++.+.+...+|+|+|+||||++++.. ||||++|++|+++++|+++++.+++
T Consensus 155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred HhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCH
Confidence 99999999999999999999999999888777779999999999998765 8999999999999999999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-43 Score=382.44 Aligned_cols=201 Identities=21% Similarity=0.359 Sum_probs=168.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.++++|+|++|+ +.++|+||||++++||++||+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 589999999996 357999999999999999999999999999999999999999887543 1224
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC-----------------CCHH---HHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSA-----------------FEPA---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~-----------------~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
|+|+||+|.+| +.||+||+.++.. .+.+ +..++++..++.+.. +....
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-----------cCchh
Confidence 99999999886 7899999988621 1111 222333344433322 23446
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
+|||||||||+|||||+.+|++|||||||+||||.+++.+++.+.+...+|.|+|+||||++++.. ||||++|++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE
Confidence 899999999999999999999999999999999999999999888776779999999999999865 8999999999999
Q ss_pred EecChhHHhh
Q 001055 367 EEGTFEDLSN 376 (1171)
Q Consensus 367 ~~g~~~~l~~ 376 (1171)
++|+++|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEecHHHHhh
Confidence 9999988654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-43 Score=376.94 Aligned_cols=201 Identities=25% Similarity=0.407 Sum_probs=171.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
+|.++|++++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 2 aI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~ 78 (238)
T d1vpla_ 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 78 (238)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEe
Confidence 589999999996 468999999999999999999999999999999999999999886533 245699
Q ss_pred EEecCCCCC-cccHHHHHhcCC---CCCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||||++.++ +.|+.||+.|.. ..+.. .+++.++..++.+..+ ....+||||||||++||||
T Consensus 79 ~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lSgG~~qrv~iA~a 147 (238)
T d1vpla_ 79 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIARA 147 (238)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-----------hhhhhCCHHHHHHHHHHHH
Confidence 999999887 679999997642 12222 3344555555544433 3346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+++|+++||||||+||||.+++.+++.+.+...+|+|+|++||+++++.. ||||++|++|+++++|+++++..
T Consensus 148 l~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999887776779999999999999875 89999999999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-42 Score=369.81 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=179.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++...+...++...+|
T Consensus 4 l~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 7999997654 699999999999999999999999999999999975 689999999999999999999999999
Q ss_pred EcCCcc-cccccHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc---
Q 001055 867 IPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR--- 940 (1171)
Q Consensus 867 v~Q~~~-lf~~tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~--- 940 (1171)
++|+.. .|..++.+++..+.. ...+.+.++++.. +++...++...+|||||||||+|||||++
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p 145 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITP 145 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred eeccccCCccccHHHHhhhccchhhHHHHHHHHHHhc-----------CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCc
Confidence 999986 456688888764322 2334444444443 45555666677899999999999999997
Q ss_pred ----CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 ----RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ----~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||+|||+.+...+++.|+++. .|+|||+||||++++.. ||||++|++|+|++.|+++|++++
T Consensus 146 ~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 679999999999999999999999999875 58999999999999877 999999999999999999999854
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1e-41 Score=363.16 Aligned_cols=197 Identities=23% Similarity=0.387 Sum_probs=164.6
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
+++ ++.++|.+ ..+ ||||+++ ||+++|+||||||||||+++|+|+++|++|.+.. .++.||||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee
Confidence 566 57788863 234 7999995 6899999999999999999999999999886532 23469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC-CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 233 PQVSWIF-NATVRDNILFGSA-FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||++.+| ..||+|||.|+.. .+. +++.++++.+++.+..+.. ..+|||||||||+|||||+.+
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~-----------~~~LSGG~kQRvaiAral~~~ 144 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHTTC
T ss_pred ccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCC-----------hhhCCHHHHHHHHHHHHHhcc
Confidence 9999998 5799999999843 222 3455566666665544433 368999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|++|||||||++|||.++..+++.+.+..++ |.|+|+||||+.++.. ||||++|++|+++++|+++++.+.
T Consensus 145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcC
Confidence 9999999999999999999999988776544 8999999999999875 899999999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.8e-39 Score=340.14 Aligned_cols=188 Identities=24% Similarity=0.393 Sum_probs=154.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|+. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+ .|.+++
T Consensus 2 ~lev~~ls~~y~~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEE
Confidence 3899999999952 69999999999999999999999999999999999999999999999998853 678899
Q ss_pred EEcCCcccccc-cHHhhccC----C-CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 866 IIPQSPVLFSG-TVRFNLDP----F-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~----~-~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|+||++.++.. |+.+|+.. + ....++++.++++..++. ++ .+...+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~----~~~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DL----KKKLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CT----TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------cc----ccccCcCCCcHHHHHHHHHHHh
Confidence 99999988755 99998852 2 244566666666553321 12 2334579999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCC--cEEEEEecChhhhhhcCEEEEEeC
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKS--CTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~--~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
.+|+||||||||+|||+.+++.+++.|.+..++ .++|.++|++ ..||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence 999999999999999999999999999887653 3344444443 45999988753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-37 Score=335.37 Aligned_cols=198 Identities=19% Similarity=0.272 Sum_probs=164.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------cCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 229 (1171)
.++++|++++ ..|++|||+|++||++||+||||||||||+++|+|+. |++|.+... ....
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECcccC-------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 4789999654 3699999999999999999999999999999999976 567765321 1137
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCC--CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc-
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS- 305 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~- 305 (1171)
+|++|+... +..++++++.++... ..+...++++..++.+. ++....+|||||||||+|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhH-----------hCcChhhcCHHHHHHHHHHHHHHhh
Confidence 999998765 678999999876432 34556666666655432 344556899999999999999997
Q ss_pred ------CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 306 ------NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 306 ------~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+|+|+||||||++||+..+..+++.+.....+|+|+|+||||++++. .||||++|++|+++++|+++++.++.
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~ 223 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCCh
Confidence 77999999999999999999999887777678999999999999865 58999999999999999999998654
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-36 Score=317.75 Aligned_cols=182 Identities=22% Similarity=0.386 Sum_probs=146.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 234 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 234 (1171)
.|+++|+||+|+ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEee
Confidence 489999999995 46999999999999999999999999999999999999999987643 3557999999
Q ss_pred CCCCC-cccHHHHHhc-----CCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 235 VSWIF-NATVRDNILF-----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 235 ~~~l~-~~Tv~eni~~-----g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
++.++ ..|+.||+.+ +...+..++.++++..++.+ +.++..+|||||||||+|||||+.+|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD------------LKKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC------------TTSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc------------cccccCcCCCcHHHHHHHHHHHhcCCC
Confidence 99886 6799999864 33445555555555443321 123346899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
++||||||++||+.+++.+++.+.+..++ +.++|.++|++ ..||++.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence 99999999999999999999888775443 44444455544 56899988864
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=4.5e-16 Score=172.94 Aligned_cols=313 Identities=12% Similarity=0.109 Sum_probs=212.2
Q ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCch--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 450 FKVLSRYKDALGG-LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWL 526 (1171)
Q Consensus 450 ~~~l~~y~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~ 526 (1171)
|+++++.++.... .+.+++.+++.++...+....+..++..+|.......... ++..++.++.+...++.+++.++.
T Consensus 1 Wk~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp CHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 4556666554432 3344455556666677777788888888776443322221 223445556666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+...++++++++++++.|+.+|+++++|++++|+++|++.+...+.......+..+..++..++.+....+...+
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 160 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI 160 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred hhhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchh
Confidence 99999999999999999999999999999999999999999999998887777777777666666666666666555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+++..+++.+.....+.+...+..+...+..+...+.+.|.++|++++|+++.++.+.+.+.+..+...+..........
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T d3b60a2 161 ILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 44444444444444555555555566666777888999999999999999999999988888777766655554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001055 687 WLAIRLEIVGGLMIWLTATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 764 (1171)
Q Consensus 687 ~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~ 764 (1171)
+......+...+...++..+... ..+.. -.+.+..++.+...+..++..+.......++...+.+|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~g~~~~~~g~i-----t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 241 ISDPIIQLIASLALAFVLYAASFPSVMDSL-----TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcccchhhhhhhhhHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333333222222222111 11211 122333344445556666666777777888899999999999988
Q ss_pred CCC
Q 001055 765 PSE 767 (1171)
Q Consensus 765 ~~e 767 (1171)
|+|
T Consensus 316 ~~E 318 (319)
T d3b60a2 316 EQE 318 (319)
T ss_dssp CCS
T ss_pred CCC
Confidence 776
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.70 E-value=2.9e-15 Score=166.82 Aligned_cols=297 Identities=11% Similarity=0.139 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCC----chHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 464 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG----PLFYN-----TIYSLLSFGQVLVTLANSYWLIISSLYAA 534 (1171)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~-----~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 534 (1171)
+.+++.+++.++...+....|.+++..+|........ ..... ..+.++.+...++.+++.++....+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (323)
T d2hyda2 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKIL 93 (323)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444445555555566666777777776653222111 11111 11223334456677788888889999999
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 535 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 614 (1171)
Q Consensus 535 ~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 614 (1171)
.++|++++++++++|+.||+++++|++++|+++|+..+...+...+...+..+..++..++.+.++.+...++.++++++
T Consensus 94 ~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~ 173 (323)
T d2hyda2 94 YDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPF 173 (323)
T ss_dssp HHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHH
T ss_pred HHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876665555556666666666666666666555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 615 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 694 (1171)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1171)
.+.....+.+..++..+......++..+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+.......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 253 (323)
T d2hyda2 174 YILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccc
Confidence 55555566666667777777778889999999999999999999999888887777666655544443333333333322
Q ss_pred HH---HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001055 695 VG---GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766 (1171)
Q Consensus 695 ~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~ 766 (1171)
+. .+++++.+.+.+.. +..+ .+.+..++.+...+..++..+............+.+|+.++++.++
T Consensus 254 ~~~~~~~~~l~~~~~~~~~-g~~s-----~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 254 VTDIGPIIVIGVGAYLAIS-GSIT-----VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TSCC-----HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cchhhHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 22 22222222333322 2221 1222233334445555666677777788889999999999997544
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.65 E-value=7.4e-18 Score=172.65 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=104.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~ 895 (1171)
+++|+||||||||||++.|+|.++|+.|.+.+.|.+....+...........++...++..+...+.....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh---------
Confidence 68999999999999999999999999999999987654322111111112222222222222222111100
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCC--CHHHHHHHHHHHHHHcCCc
Q 001055 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV--DVRTDALIQKTIREEFKSC 973 (1171)
Q Consensus 896 ~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~L--D~~t~~~i~~~l~~~~~~~ 973 (1171)
.+.+... ..+|+|+++|.++++++.++|++|++|||+... +.+....+.+.+++ .++
T Consensus 73 ---------------~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~ 131 (178)
T d1ye8a1 73 ---------------YGVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNV 131 (178)
T ss_dssp ---------------EEECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTS
T ss_pred ---------------hhcCcch----hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhcc--CCC
Confidence 0011111 137899999999999999999999999986543 33444444444432 468
Q ss_pred EEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 974 TMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 974 tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|+|+++|+.+....||++..+.+|++++.+
T Consensus 132 ~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 132 NVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp EEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred EEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 999999998877779999999999998865
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.46 E-value=2.1e-15 Score=154.09 Aligned_cols=146 Identities=14% Similarity=0.019 Sum_probs=94.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecC-------cEEEEec-----CCCCCcccHHHHHhcCCCCCHHHHHH
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-------TVAYVPQ-----VSWIFNATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~-------~i~~v~Q-----~~~l~~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
+++|+||||||||||+++|+|.++|+.|+...... +.++..+ ...+...+......++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--------
Confidence 58999999999999999999999987765433110 1111111 111111111111110000
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCC--CHHHHHHHHHHHHhhccCC
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSAL--DAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~L--D~~~~~~l~~~l~~~~~~~ 338 (1171)
.+......+|+|+++|.++++++..+|+++++|||.... +......+.+.+ ...+
T Consensus 74 --------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l---~~~~ 130 (178)
T d1ye8a1 74 --------------------GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM---HDPN 130 (178)
T ss_dssp --------------------EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH---TCTT
T ss_pred --------------------hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHh---ccCC
Confidence 001111258999999999999999999999999986443 333333333322 2347
Q ss_pred CEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 339 KTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 339 ~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
.++|+++|+......+|++..+.+|+++.-+
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 8999999999888888999999999988654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=2.2e-11 Score=141.04 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=62.7
Q ss_pred CCCChhHHHHHHHHHHh----ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEE
Q 001055 922 ENFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 922 ~~LSgGqkqrl~lAral----l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
..||||||.+++||-.+ ..++++++||||+++||+.....+.+.|.+... +.-+|+|||+...+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998876543 467889999999999999999999999988753 45699999999999999998865
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.11 E-value=1.3e-09 Score=120.19 Aligned_cols=144 Identities=19% Similarity=0.252 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.++.++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 256 (323)
T d2hyda2 177 TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTD 256 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhhccccccccch
Confidence 34566677888899999999999999999999999999999999999999988888887766666655555444444333
Q ss_pred H--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001055 84 L--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEE 147 (1171)
Q Consensus 84 ~--~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~ 147 (1171)
+ +.++++|.+.+..|.+|+|.+++++.++..+..|+..+++.+..+.++.+|++||.+++++|+
T Consensus 257 ~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 257 IGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 3 334567888889999999999999999999999999999999999999999999999998654
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.10 E-value=1.1e-09 Score=120.23 Aligned_cols=145 Identities=16% Similarity=0.112 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..+..++..+..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (319)
T d3b60a2 172 AIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccchhhhhh
Confidence 34556677788889999999999999999999999999999999999999998888888777766666655544444433
Q ss_pred H--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001055 84 L--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEK 148 (1171)
Q Consensus 84 ~--~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~ 148 (1171)
+ +.++++|.+.+..|.+|+|.+++++.++..+..|+..+++.+..+.++.+|++||.++++.|++
T Consensus 252 ~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3 3345567778889999999999999999999999999999999999999999999999987654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=9.3e-10 Score=121.68 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=66.0
Q ss_pred CCCChhHHHHHHHHHHh----ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEE--e
Q 001055 922 ENFSVGQRQLLSLSRAL----LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL--D 995 (1171)
Q Consensus 922 ~~LSgGqkqrl~lAral----l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl--~ 995 (1171)
..+|+|||+.+.++..+ ..+|+++++|||-++|+|...+.+.+.|++..++.=+|++||+...++.+|+++.+ +
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 36899999998776653 35678999999999999999999999999988888899999999999999999774 4
Q ss_pred Cc
Q 001055 996 SG 997 (1171)
Q Consensus 996 ~G 997 (1171)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 55
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.77 E-value=2.1e-08 Score=110.43 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=63.0
Q ss_pred CccChHHHHHHHHHHHh----ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE--
Q 001055 287 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV-- 360 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL----~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l-- 360 (1171)
..+|+|||+...++..+ ..++.++++|||-+||+|...+.+.+.+.... ++.=+|++||.+.+++.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~-~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHHHHhcccEEEEEE
Confidence 47999999998776654 35678999999999999999999998765543 456799999999999999999664
Q ss_pred eCC
Q 001055 361 HEG 363 (1171)
Q Consensus 361 ~~G 363 (1171)
.+|
T Consensus 297 ~~g 299 (308)
T d1e69a_ 297 VNG 299 (308)
T ss_dssp SSS
T ss_pred eCC
Confidence 455
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.6e-07 Score=107.81 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=62.2
Q ss_pred CccChHHHHHHHHHHHh----ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE
Q 001055 287 VNISGGQKQRVSMARAV----YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL----~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l 360 (1171)
..||||||.+++||-.+ +.++++++||||++|||+.....+.+.+.+....+.-+|+|||++.+++.+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 56899999998877543 357889999999999999999999987766544455699999999999999998866
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.58 E-value=0.00013 Score=75.35 Aligned_cols=49 Identities=6% Similarity=0.097 Sum_probs=36.1
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCcchhh
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~-~~~~~tvi~vtH~~~~l~ 352 (1171)
..+..++|+||+..|=|+.....+...+++. ...+..++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 3456799999999999998777666555442 334678999999865543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00011 Score=76.49 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=33.6
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHh-hcc-CCCEEEEEcCCcchh
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GEL-SGKTRVLVTNQLHFL 351 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~-~~~-~~~tvi~vtH~~~~l 351 (1171)
..+..++|+||+..|=++.....+...+++ ... .+..+|++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 344569999999999999888777554443 322 345788888876543
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.29 E-value=0.0009 Score=68.88 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=34.8
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTII 986 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~ 986 (1171)
..+..++|+||+..|=|+..-..+-.++-+.. .+++++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 34557999999999999977665544443322 3688999999876654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0018 Score=67.03 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=32.9
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHH-HHHHc-C-CcEEEEEecChhhh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKT-IREEF-K-SCTMLIIAHRLNTI 985 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~-l~~~~-~-~~tvi~vtH~~~~~ 985 (1171)
..+..++|+||+..|=|+..-..+..+ +..+. + ++.++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 445569999999999998777665444 44442 3 46788888876654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=3.2e-05 Score=76.72 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=30.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 851 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~ 851 (1171)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 588999999999999999999998877766555433
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.50 E-value=0.0046 Score=65.41 Aligned_cols=35 Identities=11% Similarity=0.191 Sum_probs=29.1
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+.|+++..-+.||+.+.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45776665689999999999999999999876663
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00011 Score=74.03 Aligned_cols=35 Identities=23% Similarity=0.491 Sum_probs=30.0
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+++.++++.+| +++|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467888888876 99999999999999999996443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.32 E-value=0.00072 Score=67.22 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
|.+++|+||+|||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988765
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00064 Score=66.12 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
+++|+|++|||||||++.|...+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999998766544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0067 Score=63.88 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=29.6
Q ss_pred hccCCCEEEEeCcCCCC-----CHHHHHHHHHHHHhhc-cCCCEEEEEcCC
Q 001055 303 VYSNSDVFIFDDPLSAL-----DAHVGRQVFDRCIRGE-LSGKTRVLVTNQ 347 (1171)
Q Consensus 303 L~~~~~vllLDEpts~L-----D~~~~~~l~~~l~~~~-~~~~tvi~vtH~ 347 (1171)
-..+++++++|--++-. |......++..+.... ..+.++|+|.|-
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34689999999554322 5555566666655433 347899999884
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.21 E-value=0.0012 Score=67.40 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~ 846 (1171)
+|++.+++|+||+|||||++.|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999987776667764
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0095 Score=62.65 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=30.3
Q ss_pred HhccCCCEEEEecCCcC-----CCHHHHHHHHHHHHHHc--CCcEEEEEecC
Q 001055 937 ALLRRSKILVLDEATAA-----VDVRTDALIQKTIREEF--KSCTMLIIAHR 981 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~-----LD~~t~~~i~~~l~~~~--~~~tvi~vtH~ 981 (1171)
.-..+|+++++|--+.- -|......+...|+.+. .++|+|+|.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34578999999965432 24455556666666544 37999999993
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.07 E-value=0.0016 Score=66.62 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+|+..+++|+||+|||||++.|.|...--+|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~ 124 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVS 124 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhcc
Confidence 6899999999999999999999987654333
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.06 E-value=0.0015 Score=63.86 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.03 E-value=0.0014 Score=65.12 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
|.++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987664
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0014 Score=63.59 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=27.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
+++|+|++|||||||++.|+..+... +.+++++..++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~-------g~~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR-------GIRPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC-------CCeEEEecccc
Confidence 68999999999999999999765432 12366666554
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.97 E-value=0.0013 Score=64.15 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
.+++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 378999999999999999888777654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.94 E-value=0.0058 Score=64.56 Aligned_cols=35 Identities=17% Similarity=0.350 Sum_probs=29.8
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+-|+++.-.+.+|+++.|.|++|+|||||+.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 45777666799999999999999999999877763
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.83 E-value=0.0021 Score=62.73 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.|+++.|.||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.82 E-value=0.028 Score=57.55 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=24.2
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|.++.|.|++|||||||+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 889999999999999999998777543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.00024 Score=71.33 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=29.6
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+++.++.+.+| ++.|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467788888776 88999999999999999997544
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.78 E-value=0.0021 Score=62.72 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+|-+|.|+|++||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.038 Score=52.53 Aligned_cols=25 Identities=40% Similarity=0.617 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
|=.++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999999864
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.71 E-value=0.011 Score=59.60 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
...++++|||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999998866665443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0024 Score=62.03 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.63 E-value=0.0027 Score=61.92 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=24.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+|-+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998655
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.62 E-value=0.013 Score=60.25 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=23.7
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+++|..+-|.|++|+|||||..-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998666533
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.025 Score=55.17 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=21.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++-+.+-++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.54 E-value=0.0013 Score=67.57 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i 847 (1171)
+|.+..++|+||+|||||++.|.|-.....|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 58889999999999999999999987766777753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.53 E-value=0.0016 Score=66.81 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVS 219 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~ 219 (1171)
+|..++++|+||+|||||++.|.|.....+
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t 125 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRT 125 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhh
Confidence 588999999999999999999999765433
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.49 E-value=0.0027 Score=62.17 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
..++|+|++|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.48 E-value=0.0047 Score=60.98 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|||+|++|+|||||++.|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.48 E-value=0.0033 Score=61.07 Aligned_cols=27 Identities=41% Similarity=0.631 Sum_probs=24.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
|+|-.++|.|++||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.45 E-value=0.0036 Score=60.85 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
|+|-.+.|.||+||||||+.+.|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998655
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0016 Score=63.90 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.+.|+||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48899999999999999999988654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.021 Score=58.94 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=34.2
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.+++|+||+-. |.......+.+.+......+.+|++|++.+-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 457999999865 78888888888887654566789999987654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.32 E-value=0.042 Score=55.11 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
++.+++++||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999866666554
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.32 E-value=0.0027 Score=61.78 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=28.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
.+++|+|++|||||||++.|...+.... .+++.+-.++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g-------~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREG-------WRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTT-------CCEEEEECCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCC-------CeEEEEEecc
Confidence 4789999999999999999988775421 2466666554
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0042 Score=62.88 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.|.+++|+||+|+|||||.+.|.-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.27 E-value=0.0038 Score=59.30 Aligned_cols=22 Identities=18% Similarity=0.528 Sum_probs=19.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhc
Q 001055 192 SLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++.|+|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.27 E-value=0.0041 Score=60.24 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
..+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999998755
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.26 E-value=0.0038 Score=60.59 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
..+|.|.|++||||||+.+.|+..++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998774
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.25 E-value=0.0035 Score=61.34 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+|+|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.24 E-value=0.0029 Score=63.23 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999863
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.14 E-value=0.0036 Score=62.48 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|+|+|++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.14 E-value=0.0049 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
..+|.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998874
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.11 E-value=0.014 Score=65.32 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+|..+|=++|+|+++.|.. |+++.....++-. .|..|+.+-|=-+..
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~---tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQASL---TGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHH---TTCEEEEEECCSSSH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHHHHHh---cCCeEEEEeccCchH
Confidence 4556667799999999987 6666655554433 588899998854443
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.10 E-value=0.0044 Score=61.41 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|||.|++|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997554
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.04 E-value=0.0044 Score=61.49 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999986654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0049 Score=58.84 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0038 Score=61.92 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999997654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.00 E-value=0.0044 Score=59.85 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.++.|.||+||||||+.+.|+..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999997663
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.006 Score=61.68 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|.++.|+||||+|||||.+.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999998876543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.99 E-value=0.0047 Score=60.47 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
.+|+|.|++||||||+.+.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999998766544333
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.98 E-value=0.0058 Score=59.79 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+.+++|.|++||||||+.+.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999976553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.95 E-value=0.0082 Score=65.01 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=31.6
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
+..|.-+.|.|++||||||+++.|++.++|+.=-|.+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 34456689999999999999999999998876666664
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.92 E-value=0.036 Score=58.01 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=25.0
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++..-+.|.||+|||||+|.+++++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 344555688999999999999999999873
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.91 E-value=0.0053 Score=59.37 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|+|++||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.90 E-value=0.0058 Score=57.99 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=23.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
+.+.|+|++||||||+++.|..- ..|.+.++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEec
Confidence 46789999999999999987542 23556555
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.86 E-value=0.0068 Score=60.15 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
|+|-+++|+||.||||||..+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.78 E-value=0.076 Score=55.10 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=23.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
++..-+.+.||+|+|||++++.|+..+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3445578999999999999999998763
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.76 E-value=0.0063 Score=58.68 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=25.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
..+.|.||+||||||+.+.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3688999999999999999998763 3444443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.66 E-value=0.005 Score=66.79 Aligned_cols=32 Identities=38% Similarity=0.698 Sum_probs=27.5
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVS 219 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~ 219 (1171)
++.|.-+.|+|+.|||||||+++|++.++|+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 44556689999999999999999999998753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.61 E-value=0.057 Score=54.11 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
..++.++||+|+||||.+--|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999877775553
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.59 E-value=0.042 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=20.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+.-++++|||+|+||||.+-=|+..+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999875555443
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.0084 Score=58.29 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|+|+|+.|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.52 E-value=0.0057 Score=60.36 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
-|||+|++++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.52 E-value=0.007 Score=58.45 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|+||+||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999997544
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.0052 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|-+|.|+|++||||||+.+.|+..+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999986553
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.0082 Score=57.15 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999998765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.43 E-value=0.01 Score=58.76 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=24.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
|+|-++.|+||.||||||+.+.|+--+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999544
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0083 Score=59.11 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=21.8
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
..++|+||+|+|||||++.|....+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5789999999999999999986543
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.40 E-value=0.019 Score=64.02 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=68.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCch
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 268 (1171)
.++-.+.|.||.||||||++..++..++.... +|-.+- +|.-+. .+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~-------~i~tiE-dPiE~~----------~~~~-------------- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSER-------NILTVE-DPIEFD----------IDGI-------------- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTS-------CEEEEE-SSCCSC----------CSSS--------------
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCc-------eEEEec-cCcccc----------cCCC--------------
Confidence 45678999999999999999999987743211 122221 232110 0000
Q ss_pred HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCc
Q 001055 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348 (1171)
Q Consensus 269 ~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~ 348 (1171)
....+.. ..|+----+|..+|=+|||++++.|.. |+++.....+. ...|..|+-+-|--
T Consensus 204 ---------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a----a~tGhlV~tTlHa~ 262 (401)
T d1p9ra_ 204 ---------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA----SLTGHLVMSTLHTN 262 (401)
T ss_dssp ---------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH----HHTTCEEEEEECCS
T ss_pred ---------CeeeecC-----CcCCCHHHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHH----HhcCCeEEEEeccC
Confidence 0000000 001112345777888999999999997 67776665543 34577888888876
Q ss_pred chhhhcCE
Q 001055 349 HFLSQVDR 356 (1171)
Q Consensus 349 ~~l~~~d~ 356 (1171)
+-....+|
T Consensus 263 ~a~~~~~R 270 (401)
T d1p9ra_ 263 TAVGAVTR 270 (401)
T ss_dssp SSHHHHHH
T ss_pred chHhhhhh
Confidence 65544343
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.37 E-value=0.0096 Score=57.86 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|+|+|+.|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.0092 Score=60.33 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.33 E-value=0.0078 Score=59.08 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.|+|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.053 Score=54.42 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
-.++++|||+|+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999866665554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.31 E-value=0.0077 Score=59.74 Aligned_cols=23 Identities=35% Similarity=0.797 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
++|+||+|||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.0086 Score=57.39 Aligned_cols=24 Identities=54% Similarity=0.594 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
|=+|+|+|++|+|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447999999999999999999975
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.0099 Score=56.51 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.27 E-value=0.0076 Score=58.81 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
-+++|||++|+|||||++.|.|...
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999998754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.25 E-value=0.0097 Score=56.56 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|++|||||||++.+.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999987653
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.24 E-value=0.009 Score=58.60 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|+|+|++|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.23 E-value=0.01 Score=59.05 Aligned_cols=25 Identities=24% Similarity=0.581 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
..+++|+||+||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.21 E-value=0.011 Score=58.28 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|||+|.+|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.014 Score=62.44 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=32.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCc
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 240 (1171)
++||.|++||||||+.+.|.-.+.-..+ ...+..+++|.++.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----CCceEEEeeeeeECC
Confidence 7899999999999999998876642211 124889999988754
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.16 E-value=0.01 Score=60.92 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|+.|||||||++.|+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.01 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999864
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.14 E-value=0.049 Score=56.93 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.0
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.+++..-+-+.||+|+|||+|++.+++.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 344556688999999999999999998873
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.13 E-value=0.0077 Score=59.11 Aligned_cols=21 Identities=52% Similarity=0.789 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
|||+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.11 E-value=0.033 Score=58.31 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=35.1
Q ss_pred EEEEECCCCCcHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 816 KVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
-|||+|..|+|||||+..|+ |.. ...|+|. +|..+.+..+.+..+.+++-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti~ 56 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTVR 56 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCeEE
Confidence 37999999999999999884 433 2456554 55666666777766665543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.011 Score=59.74 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=31.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 238 (1171)
++||.|++||||||+.+.|+-.+... ........+.+++++.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~--~~~~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN--EVDYRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG--GSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh--ccccCCCceEEEeccccc
Confidence 68999999999999999997665321 111122347888998764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.09 E-value=0.0083 Score=58.51 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-+++|||++|+|||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.09 E-value=0.011 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+++|||.+|||||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999988643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.08 E-value=0.012 Score=57.66 Aligned_cols=22 Identities=45% Similarity=0.767 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.08 E-value=0.011 Score=56.01 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|.|+|++|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.012 Score=57.40 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.|+|+|.+|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999974
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.01 E-value=0.0078 Score=59.31 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
|||+|++++|||||++.|+|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998854
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.01 E-value=0.012 Score=56.31 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+++|||++|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.93 E-value=0.012 Score=58.67 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=24.7
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.++.++.|+||+||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998755
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.012 Score=58.50 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|+||+|||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.91 E-value=0.013 Score=57.28 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|+|+|.+|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.90 E-value=0.012 Score=58.16 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
|.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.88 E-value=0.01 Score=59.05 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+-.+++|+||.||||||+.+.|+-.+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998766
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.014 Score=57.42 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999887543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.83 E-value=0.012 Score=58.30 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
..+|.|+||.||||||+.+.|+--+ |-+.++
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 4589999999999999999998654 445554
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.82 E-value=0.013 Score=60.13 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|+|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.80 E-value=0.015 Score=59.99 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=30.6
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~ 352 (1171)
+..++++||+=. |.......+.+. +.....+..+|++|++.+.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~-~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRT-MEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHH-HHHSTTTEEEEEEESCSCSSC
T ss_pred CceEEEeccccc-cccccchhhhcc-cccccccccceeeeccccchh
Confidence 456999999854 777776666553 333334456799999987654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.014 Score=56.79 Aligned_cols=22 Identities=41% Similarity=0.822 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.79 E-value=0.016 Score=57.73 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+++|+++.|.||+|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999998777543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.77 E-value=0.014 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.|+|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.76 E-value=0.014 Score=56.34 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.74 E-value=0.016 Score=56.67 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
++-+++.++|++||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999998853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.68 E-value=0.011 Score=57.83 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
|||+|++|+|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.65 E-value=0.015 Score=56.79 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+||+||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.65 E-value=0.014 Score=58.35 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|+|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999863
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.63 E-value=0.014 Score=56.76 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=20.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.+.|+|++||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999997544
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.0085 Score=58.64 Aligned_cols=24 Identities=50% Similarity=0.560 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
=+|+|+|++++|||||++.|+|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.55 E-value=0.021 Score=54.86 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+++|+|+.|||||||++.|.|...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 588999999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.52 E-value=0.013 Score=57.94 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|.||.||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997554
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.48 E-value=0.014 Score=60.96 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.++|+|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.43 E-value=0.013 Score=61.05 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+.|.||+|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.41 E-value=0.023 Score=54.48 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+++|+|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.30 E-value=0.019 Score=56.36 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.30 E-value=0.018 Score=57.15 Aligned_cols=22 Identities=45% Similarity=0.714 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
|.|+||||||||||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987653
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.019 Score=56.81 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.27 E-value=0.0066 Score=58.15 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|+|+|++|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.041 Score=53.07 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|+++|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.20 E-value=0.019 Score=55.44 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|+|++||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.012 Score=57.57 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|+|+|++++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.18 E-value=0.021 Score=56.63 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
-.++.|+||.||||||+.+.|+.-| |-+.++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4479999999999999999999766 545554
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.024 Score=56.42 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
-+++|+.+-|.||+|+|||||..-++.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999999999877664
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.13 E-value=0.02 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998665
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.11 E-value=0.02 Score=55.43 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
=+++|+|.+|||||||++.|.|..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.01 E-value=0.022 Score=56.86 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|.+||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.00 E-value=0.021 Score=59.61 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|+|++|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999974
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.99 E-value=0.015 Score=63.03 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
.-+|||.||.|||||||++.|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 448999999999999999999876653
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.015 Score=62.31 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 699999999999999999987764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.92 E-value=0.021 Score=55.79 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.++.|.|++||||||+.+.|+..++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999987663
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.89 E-value=0.0093 Score=57.05 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|+|++|+|||||++.|.|.-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.89 E-value=0.026 Score=56.68 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
++.+++++||+|+||||.+--|+-.+.- . +.+|+.+.=|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~-~------g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-L------GKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-T------TCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-C------CCcEEEEEecc
Confidence 5689999999999999998777754421 1 23477665553
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.88 E-value=0.024 Score=55.26 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.83 E-value=0.022 Score=56.21 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 001055 193 LVAIVGGTGEGKTSLISAML 212 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~ 212 (1171)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.82 E-value=0.021 Score=56.43 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999863
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.71 E-value=0.025 Score=55.27 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997544
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.027 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.64 E-value=0.021 Score=56.62 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=27.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
++.+.++.|+||.||||||+.+.|+.-+ |-+.++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4567899999999999999999998754 445554
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.62 E-value=0.024 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999998544
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.60 E-value=0.021 Score=56.70 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998765
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.03 Score=54.23 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 588999999999999998875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.57 E-value=0.55 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
..+++|+|..|.|||||.+.+.-.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.57 E-value=0.027 Score=56.16 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|.++|++||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999997654
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.54 E-value=0.028 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999665
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.52 E-value=0.029 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.03 Score=56.38 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|+|.||.||||||+.+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998554
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.45 E-value=0.026 Score=55.23 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
|||+|+.+||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999874
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.45 E-value=0.021 Score=56.31 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|.||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.39 E-value=0.03 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
=+++|+||.||||||+.+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998755
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.35 E-value=0.025 Score=56.01 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-+|+|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.26 E-value=0.028 Score=54.36 Aligned_cols=23 Identities=39% Similarity=0.431 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
=+|.|+|..|||||||++.|.+-
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.23 E-value=0.03 Score=54.82 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|+|+..+|||||++.|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.23 E-value=0.033 Score=54.47 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.22 E-value=0.021 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
++.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999987764
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.21 E-value=0.028 Score=56.66 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
.+-.++++|||+|+||||.+--|+-.+. .. +.+|+++.=|.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~------~~kV~lit~Dt 49 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-DE------GKSVVLAAADT 49 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-HT------TCCEEEEEECT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HC------CCceEEEeecc
Confidence 3445889999999999998877775432 11 23577776553
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.055 Score=51.89 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.14 E-value=0.032 Score=53.68 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998655
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.036 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|.+++|-|+-||||||+++.|.-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.06 E-value=0.034 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|+|-||+||||||..+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998655
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.04 E-value=0.035 Score=55.87 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+++|.||+||||||+.+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999987763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.00 E-value=0.034 Score=55.73 Aligned_cols=20 Identities=35% Similarity=0.745 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 001055 193 LVAIVGGTGEGKTSLISAML 212 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~ 212 (1171)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.96 E-value=0.035 Score=56.02 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+++|-||+||||||..+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999999998763
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.045 Score=52.95 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4889999999999999998764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.92 E-value=0.037 Score=55.67 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
++|.++-+.|.+||||||+.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999998743
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.038 Score=61.52 Aligned_cols=28 Identities=50% Similarity=0.704 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERG 843 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G 843 (1171)
.|||+|++|+|||||+|.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996543333
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.82 E-value=0.037 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988664
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.025 Score=57.78 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
++.+++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999988763
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.81 E-value=0.041 Score=55.39 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|-+++|-|+-||||||+.+.|.-.+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.80 E-value=0.037 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|+.|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3899999999999999988654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.79 E-value=0.033 Score=60.08 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
.-++||+|++|+|||||+..|...+... | .+||++.=+|.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~-g------~~vavlavDps 93 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE-G------LKVAVIAVDPS 93 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT-T------CCEEEEEECCC
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc-C------CceeeecCCCc
Confidence 3489999999999999999998655321 1 24777776664
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.054 Score=52.13 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999987763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.74 E-value=0.029 Score=57.35 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
++..|+|-|+-||||||++++|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.035 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
-|+|+|+.|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.70 E-value=0.52 Score=48.99 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
..+++|+|.-|.|||||++.+..-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.67 E-value=0.04 Score=55.18 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 001055 816 KVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~ 835 (1171)
++||.|..||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.67 E-value=0.042 Score=55.96 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.4
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.+++|+++.|.|++|||||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999999987754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.048 Score=52.32 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|++|+|||||++.+.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999887653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.66 E-value=0.036 Score=54.02 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|+||.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998554
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.58 E-value=0.046 Score=52.16 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=26.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
..++|.+++|.|+=|||||||.|.++..+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3478999999999999999999998876643
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.57 E-value=0.042 Score=54.83 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.56 E-value=0.039 Score=57.29 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
-+.+.||+|||||||.+.|++.+. .+-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 478999999999999999999774 33455553
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.53 E-value=0.045 Score=55.02 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=28.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CceEEECCE
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELE--RGRILIDGF 850 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~--~G~I~i~g~ 850 (1171)
++|-++-+.|.+||||||+.+.|...+... --.+.+||.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch
Confidence 568899999999999999999987543211 234667763
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.49 E-value=0.044 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.49 E-value=0.044 Score=52.51 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 688999999999999997764
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.40 E-value=0.04 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.39 E-value=0.28 Score=49.87 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=34.8
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 986 (1171)
.+|+|+||+=. |+.+....+...|.+...++.+|++|++.+-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence 46999999964 788888888888876545678999999877653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.095 Score=50.29 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988774
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.37 E-value=0.042 Score=56.57 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998763
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=0.041 Score=55.31 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQV 235 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~ 235 (1171)
.++++|||+|+||||.+--|+-.+. .. +.+|+.+.=|
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~------g~kV~lit~D 46 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQ------GKSVMLAAGD 46 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TT------TCCEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HC------CCcEEEEecc
Confidence 5799999999999999887775543 12 2346766554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.31 E-value=0.049 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.047 Score=54.89 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
++|-.|+|-|+-||||||+++.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999987654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.23 E-value=0.06 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++++|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.056 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|+.|+|||||++.+.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999876643
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.18 E-value=0.049 Score=54.64 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
..+++++||+|+||||.+--|+-.+.- . ..+++.+.=|.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~-~------g~kV~lit~Dt 48 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG-K------GRRPLLVAADT 48 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-T------TCCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-C------CCcEEEEeccc
Confidence 457899999999999998888765431 1 23466665553
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.072 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.15 E-value=0.058 Score=51.44 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=26.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
.+||.++.+.|+=||||||+.+.++.-+-.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999999876643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.05 Score=52.77 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.05 E-value=0.044 Score=53.03 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998865
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.03 E-value=0.053 Score=53.51 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+.-++.|+||.||||||+.+.|+--+
T Consensus 5 r~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 5 RLLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.1 Score=50.02 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.00 E-value=0.059 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|.+|+|||||++.+.+.-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999877653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.99 E-value=0.048 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998865
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.052 Score=54.45 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
++||+|..||||||..+.+.-
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.87 E-value=0.052 Score=53.03 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.053 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|||++|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999987754
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.06 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|+++|++|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999888753
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.06 Score=52.63 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999998864
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.69 E-value=0.072 Score=50.91 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|+++|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987663
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.68 E-value=0.061 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.|+||.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999999998654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.67 E-value=0.062 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+|.+++|-|+-||||||+.+.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.65 E-value=0.057 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=23.2
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHh
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAML 212 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~ 212 (1171)
.+++|+++.|.|++|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999987554
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.62 E-value=0.067 Score=59.39 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.|+|+|++|+|||||+|.|.|.-
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999954
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.60 E-value=0.068 Score=51.22 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999997653
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.49 E-value=0.075 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|..|+|||||++.+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999887653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.064 Score=52.41 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999988875
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.061 Score=55.00 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.+++|+++.|.|++|||||||...++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999887764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.064 Score=53.75 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.36 E-value=0.059 Score=54.84 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
++||+|..+||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999875
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.35 E-value=0.071 Score=53.77 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=25.6
Q ss_pred ceeeeeE-EecCCCEEEEEcCCCccHHHHHHHHh
Q 001055 180 TLLNINL-DIPVGSLVAIVGGTGEGKTSLISAML 212 (1171)
Q Consensus 180 ~l~~isl-~i~~Ge~v~lvG~nGsGKSTLl~~l~ 212 (1171)
-|+++=- .+++|+++.|.|++|+|||||+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3444332 48999999999999999999975443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.33 E-value=0.065 Score=52.30 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|+++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.29 E-value=0.059 Score=54.94 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.2
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
+.+.||+|+||||+.++|+.++..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 679999999999999999987643
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.065 Score=53.62 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|..|+|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987554
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.083 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 48899999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.061 Score=51.81 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999997765
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.071 Score=51.26 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 48899999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.24 E-value=0.065 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
-+++|+++-|.||+|||||||..-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 48999999999999999999997665
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.075 Score=55.17 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
..-+.+.||+|||||++.+.|+.++.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34578999999999999999998763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.23 E-value=0.066 Score=54.36 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.9
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+++.|.|++|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999887763
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.17 E-value=0.037 Score=58.28 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999876654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.15 E-value=0.059 Score=57.65 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.8
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.-+.++||+|||||.|.|+|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 345689999999999999999875
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.14 E-value=0.066 Score=54.46 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|||+|..+||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.11 E-value=0.067 Score=57.48 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.-++||.||.|||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4479999999999999999887643
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.081 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988864
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.12 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.755 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 789999999999999997765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.086 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|.+|+|||||++.+.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999998887643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.04 E-value=0.063 Score=56.32 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=27.4
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
=+.|.+|++.+|+|++|+|||||+..|+.-.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3688999999999999999999999887643
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.02 E-value=0.072 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+..+.|.||.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999886543
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.07 Score=51.51 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
++.+||++|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5889999999999999987643
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.01 E-value=0.062 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+.+.||+|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998753
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.99 E-value=0.077 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|+++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58899999999999999988753
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.084 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.94 E-value=0.04 Score=57.99 Aligned_cols=39 Identities=8% Similarity=0.194 Sum_probs=26.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 238 (1171)
++||.|++||||||+.+.|.-.+... .-.+.++.||...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------GVKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------TCCEEEEEGGGGB
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc-------CCCeEEEeCCCCC
Confidence 79999999999999999887655321 1136788998754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.91 E-value=0.067 Score=54.33 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.76 E-value=0.074 Score=57.16 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=28.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
-++||.|+.|+|||||+..|...+.- ...++|++.=||.
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~-------~g~~vaViavDps 90 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTA-------AGHKVAVLAVDPS 90 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH-------TTCCEEEEEECGG
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhh-------cCCceeeeecccc
Confidence 47999999999999999999754311 1224777766654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.099 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|.|+|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999888653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.71 E-value=0.076 Score=50.88 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.69 E-value=0.08 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.59 E-value=0.07 Score=53.55 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
.-.++++|||+|+||||.+--|+-.+. . .+.+|+++.=|.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~------~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K------KGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H------TTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H------CCCceEEEEeec
Confidence 345789999999999999877775442 1 123577776554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.56 E-value=0.098 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|..|+|||||++.+.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999887643
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.56 E-value=0.074 Score=56.83 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+.-+.++||+|+|||+|.+.|++.+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34567999999999999999998753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.081 Score=51.07 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999987665
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.35 Score=48.08 Aligned_cols=44 Identities=11% Similarity=0.173 Sum_probs=31.5
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.+|+|+||+= .|...+...+.+.|.+-.++..+|++|++.+-+
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 36799999864 355677777888887643455678889987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.45 E-value=0.082 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.43 E-value=0.063 Score=56.36 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=27.7
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+.|.+|++.+|+|++|+|||||+..|..-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999987553
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.41 E-value=0.083 Score=53.20 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
+|..|+|-|+-||||||++++|.-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999876653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.33 E-value=0.14 Score=49.68 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=26.8
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHh
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML 212 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~ 212 (1171)
..++..-+.+ .|.-+.|.|++|+|||||.-.|.
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 3566666666 78889999999999999987775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.33 E-value=0.078 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999998877643
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.23 E-value=0.088 Score=52.26 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.095 Score=50.38 Aligned_cols=21 Identities=24% Similarity=0.643 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.22 E-value=0.091 Score=50.70 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.++|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999977764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.14 E-value=0.06 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|++|+|||||++.+.+..
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999986643
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.14 E-value=0.12 Score=49.47 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.12 E-value=0.11 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999977654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.10 E-value=0.11 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.09 E-value=0.07 Score=55.07 Aligned_cols=22 Identities=50% Similarity=0.684 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.+.||+|||||+|.++|+.++
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.08 E-value=0.12 Score=49.15 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.06 E-value=0.11 Score=50.04 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 588999999999999999887543
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.06 E-value=0.13 Score=49.92 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=26.3
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
.+|.--+.+ .|.-|.|.|++|+|||||...|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 466666666 68889999999999999987665
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.04 E-value=0.08 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
-+.+.||+|||||++.++|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999999864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.04 E-value=0.059 Score=52.49 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688999999999999998754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.03 E-value=0.097 Score=53.69 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.+-|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.03 E-value=0.15 Score=48.75 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.03 E-value=0.085 Score=50.86 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|..|+|||||++.+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999987653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.98 E-value=0.097 Score=50.09 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|+|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.97 E-value=0.16 Score=48.62 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.1 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
-|++|+.+-|.|++|+||||+...++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999999987776
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.82 E-value=0.11 Score=51.08 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 001055 194 VAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
++|+|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999987754
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.74 E-value=0.11 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998875
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.71 E-value=0.16 Score=49.16 Aligned_cols=32 Identities=34% Similarity=0.411 Sum_probs=24.2
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
.+|.--+.+ .|.=|.|.|++|+||||+...|.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 455544444 47889999999999999986655
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.61 E-value=0.1 Score=54.72 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7999999999999999877543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.096 Score=50.52 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.11 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.55 E-value=0.13 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|..|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999988854
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.1 Score=49.98 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|+.|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.48 E-value=0.11 Score=54.67 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=28.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 238 (1171)
++||-|+.|||||||.+.|.-.+... .-....|..++.|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~----~~~~~~v~~iS~DdfY 70 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK----YGGEKSIGYASIDDFY 70 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH----HGGGSCEEEEEGGGGB
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHH----hCCCcceEeeccCCCC
Confidence 78999999999999998775432110 0012247888888753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.47 E-value=0.13 Score=52.75 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERG 843 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G 843 (1171)
...+.|.||.|+||||+++.|+..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 347889999999999999999988764433
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.47 E-value=0.11 Score=52.31 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=24.8
Q ss_pred cceeeeE-EEcCCCEEEEECCCCCcHHHHHHHH
Q 001055 803 VLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTL 834 (1171)
Q Consensus 803 ~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~l 834 (1171)
-|+++-- -+++|+.+-|.|++|+|||||..-+
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHH
Confidence 3444322 4899999999999999999998543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.1 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999887654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.38 E-value=0.072 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=9.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877754
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.14 Score=49.55 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.31 E-value=0.1 Score=52.91 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=31.4
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 986 (1171)
++.|+++||.= .+.......+...+......+.+|+++++.+.+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~ 153 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 153 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhch
Confidence 56899999963 4444555667777766555678888888876653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.30 E-value=0.094 Score=53.35 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
+-+.||+|+||||++++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6789999999999999999877654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.13 E-value=0.076 Score=51.19 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|+.|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.1 Score=50.23 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.99 E-value=0.15 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988774
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.97 E-value=0.11 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.92 E-value=0.087 Score=50.77 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.++++|++|+|||||++.+.+...
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999986543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=0.12 Score=50.22 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.|+|.+|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=87.89 E-value=0.13 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.1
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
..+.|.||.|+||||+++.++..++.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 47889999999999999999987754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.86 E-value=0.12 Score=53.34 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999876543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.82 E-value=0.11 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHH
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTL 834 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l 834 (1171)
-+++|+.+-|.||+|||||||.--+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 4899999999999999999998644
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.81 E-value=0.11 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.+.||+|+||||++++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998765
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.76 E-value=0.13 Score=51.99 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=22.9
Q ss_pred EEEEEcCCCccHHHHHHHH-hcCCCCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAM-LGELPPVSD 220 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l-~G~~~~~~g 220 (1171)
++.|+|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999876 455567665
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.76 E-value=0.12 Score=49.51 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++++|..|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999987763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.69 E-value=0.12 Score=52.39 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=23.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
+++|+.+-|.|++|+||||+..-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986665
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.65 E-value=0.11 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHhcCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.|.||+|||||+++++++.+.
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7799999999999999999875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.14 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|.|+|.+|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6889999999999999887643
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.56 E-value=0.13 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.55 E-value=0.13 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.52 E-value=0.13 Score=49.19 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.49 E-value=0.092 Score=50.63 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.46 E-value=0.15 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHhcCCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+||+|...+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 79999999999999999998653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.44 E-value=0.14 Score=51.56 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=23.4
Q ss_pred EEEEECCCCCcHHHHHHHH-hcCCCCCCc
Q 001055 816 KVGIVGRTGAGKSSMLNTL-FRIVELERG 843 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l-~g~~~p~~G 843 (1171)
++.|+|.+|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6889999999999999765 466677777
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.42 E-value=0.086 Score=50.78 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.41 E-value=0.13 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.37 E-value=0.21 Score=48.26 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=24.2
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.++..-+. -.|.=+.|+|++|+|||||.-.|..
T Consensus 4 ~lH~~~v~-~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVD-IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEE-ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44444443 3567799999999999999877653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.37 E-value=0.14 Score=50.30 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|+|+.|+|||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 389999999999999998764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.33 E-value=0.17 Score=49.07 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRI 845 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I 845 (1171)
++.++|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999998877667777743
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.30 E-value=0.21 Score=52.27 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
=++||||..-+|||||++.|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999964
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.10 E-value=0.091 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999887543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.03 E-value=0.13 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+-|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.03 E-value=0.14 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|||..|+|||||++-+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.01 E-value=0.21 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999976653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=86.87 E-value=0.14 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+-+.||.|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999998653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=0.15 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++++|..|+|||||++.+.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999776643
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=86.59 E-value=0.088 Score=56.76 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.5
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.-+.|+|+.|+|||||++.+.+.+||
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45789999999999999999999876
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.54 E-value=0.15 Score=51.35 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=28.4
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~ 352 (1171)
..++++||.= .+.......+...+. .......++++|++...+.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le-~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSC
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhh-hcccceeeccccCcHHHhH
Confidence 3599999974 577777777665443 3333455667777766654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.51 E-value=0.14 Score=54.75 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+|||||..-+|||||+++|+|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999986
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.51 E-value=0.16 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999965
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=86.39 E-value=0.18 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.28 E-value=0.17 Score=49.34 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999886643
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.23 E-value=0.17 Score=51.45 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhc
Q 001055 192 SLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.19 E-value=0.17 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986554
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.12 E-value=0.18 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.+||..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999987764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.83 E-value=0.16 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
-+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999865
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.80 E-value=0.18 Score=49.33 Aligned_cols=20 Identities=20% Similarity=0.491 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHh
Q 001055 193 LVAIVGGTGEGKTSLISAML 212 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~ 212 (1171)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999999883
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.77 E-value=0.19 Score=51.16 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|||.|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.71 E-value=0.18 Score=54.78 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.0
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
+++..+++.||.|+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5667899999999999999999999863
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.56 E-value=0.16 Score=53.23 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-+|+|+||.++|||||++.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.56 E-value=0.17 Score=49.24 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+++++|..|+|||||++-+.....|+.|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 5789999999999999988765556554
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.52 E-value=0.18 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++|||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.47 E-value=0.18 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999987653
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.38 E-value=0.14 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998765
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.33 E-value=0.18 Score=52.38 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=25.9
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
=+.+-+|++++|+|+.|+|||||+..+..-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 367889999999999999999998777654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.31 E-value=0.18 Score=49.28 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|+|..|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999877654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.23 E-value=0.19 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-+.+.||+|+|||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 46799999999999999998754
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.23 E-value=0.2 Score=51.99 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=31.0
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCceEEECCE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIV-ELERGRILIDGF 850 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~-~p~~G~I~i~g~ 850 (1171)
-+++|.++-|.||+|+|||||.-.++... ++..--+++|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 67899999999999999999986665444 443344677654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.23 E-value=0.21 Score=48.88 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHh--cCCCCCCc
Q 001055 816 KVGIVGRTGAGKSSMLNTLF--RIVELERG 843 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~--g~~~p~~G 843 (1171)
++.|+|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68899999999999998873 23457777
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.07 E-value=0.17 Score=56.53 Aligned_cols=45 Identities=18% Similarity=0.377 Sum_probs=29.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP 871 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 871 (1171)
=+.++||+|+|||-|.+.|++++... -+..|+...+ ..|||-.|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 36799999999999999999987432 4555543332 256666654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.05 E-value=0.22 Score=52.51 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+-++||||...+|||||++.|++--
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 4579999999999999999999763
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.03 E-value=0.25 Score=51.20 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=25.5
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+++|.++-|.||+|||||||+-.++-..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999987776554
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.70 E-value=0.22 Score=51.78 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.8
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
=+.+-+|++++|+|+.|+|||||+.-++-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 37889999999999999999999877754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.57 E-value=0.17 Score=56.55 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred EEEEcCCCccHHHHHHHHhcCCCCCCCcccee----cCcEEEEecCC
Q 001055 194 VAIVGGTGEGKTSLISAMLGELPPVSDASAVI----RGTVAYVPQVS 236 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----~~~i~~v~Q~~ 236 (1171)
+.++||+|||||-|.+.|++.+..- .... --.+|||..+.
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecch
Confidence 6699999999999999999977421 0111 11378888874
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.22 E-value=0.2 Score=52.22 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 816 KVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
-|||+|..|||||||+..|+ |..+ ..|++. +|..+.+..+.+..+.+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcc
Confidence 37999999999999998884 4444 345553 3444444455555555544
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.20 E-value=0.3 Score=46.91 Aligned_cols=31 Identities=35% Similarity=0.397 Sum_probs=23.3
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
++..-+. -.|.=|.|.|++|+||||+.-.|.
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4553343 358889999999999999885554
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.02 E-value=0.23 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.|||||.+-+|||||+++|+|--.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred cEeEECCCCCCHHHHHHHHHCCCC
Confidence 489999999999999999999743
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.98 E-value=0.22 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
=.+||||.+.||||||+++|++.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 359999999999999999999864
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=83.93 E-value=0.22 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+++||.-+||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999965
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.57 E-value=0.29 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.550 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
-+||+|...+|||||++.|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEEccCCcHHHHHHHHHhhhch
Confidence 3889999999999999999997643
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.57 E-value=0.24 Score=49.66 Aligned_cols=44 Identities=23% Similarity=0.359 Sum_probs=31.9
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.+++++||.-. +.......+...+......+..++++++.+-+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 467999999764 55556666777777655567888888887665
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.46 E-value=0.29 Score=47.73 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+|.++|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999977653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=83.45 E-value=0.28 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+-+.||.|+|||+|++.|++.+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6799999999999999999865
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.34 E-value=0.25 Score=49.15 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 001055 194 VAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 194 v~lvG~nGsGKSTLl~~l~G 213 (1171)
+|++|..++|||||+..|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999964
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.32 E-value=0.23 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+++||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999965
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.22 E-value=0.25 Score=49.99 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++|=|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999986653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.93 E-value=0.39 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=21.1
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.-.|.-+.|.|++|+|||||.-.|.-
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 44678899999999999998866553
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.50 E-value=0.34 Score=49.97 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-+-+.||+|+|||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37799999999999999999864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.49 E-value=0.28 Score=49.19 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.+++++||.- .+.......+...|.+..+...+++++++...+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34799999974 577888888888888765566677777776554
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.34 E-value=0.3 Score=48.53 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
-+||+|..++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999864
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.33 E-value=0.32 Score=50.48 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=31.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce-EEECCE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR-ILIDGF 850 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~-I~i~g~ 850 (1171)
-++.|.++-|.||+|+|||||...++....-..|. |+||..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 67899999999999999999986666555444555 566644
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.31 E-value=1.5 Score=42.88 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=35.2
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.+|+|+||+= .|...+...+.+.|.+-..+...|++|++.+-+
T Consensus 79 ~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 79 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCEEEEEeCcc-ccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 35899999964 478888999999998754567889999997764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.66 E-value=0.37 Score=47.65 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.|||+|.-.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 589999999999999999998654
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.33 E-value=0.25 Score=51.40 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=28.4
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
=+.|-+|++++|+|++|+|||+|+..+..-..-+...
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 3678899999999999999999997655444433333
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=80.83 E-value=0.34 Score=52.61 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+++..+.+.||.|+||||+.+.|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6677899999999999999999999874
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.60 E-value=0.27 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35567999999999999999775
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.50 E-value=0.38 Score=48.05 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=30.7
Q ss_pred ccCCCEEEEeCcCCCC-CHHHHHHHHHHHHhhccCCCEEEEEcCC
Q 001055 304 YSNSDVFIFDDPLSAL-DAHVGRQVFDRCIRGELSGKTRVLVTNQ 347 (1171)
Q Consensus 304 ~~~~~vllLDEpts~L-D~~~~~~l~~~l~~~~~~~~tvi~vtH~ 347 (1171)
+.+.+++++||.=.-. ++..+..++..+-.....|+.+|+++..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 5678999999985433 4666777777554445567787777754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=80.30 E-value=0.23 Score=53.34 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
--+-|+|+.|+|||||++.+.++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999999976
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=80.19 E-value=0.39 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+||||-.-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
|